RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10072
(84 letters)
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 42.4 bits (100), Expect = 7e-08
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
RTHTGEKPY C+ C T + H + + D
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 40.1 bits (94), Expect = 4e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
R TG KP++C C + + S ++ H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 39.0 bits (91), Expect = 1e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 4 HIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
+ YKC C + +HSS +S H R H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 38.8 bits (91), Expect = 1e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H+GEKPY C C + SS + H R+H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.4 bits (90), Expect = 2e-06
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 6 RTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
RTH+GEKPY+C C S TM H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 34.0 bits (78), Expect = 1e-04
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 8 HTGEKPYKCTFCPFTAAHSSTMSYHLRIHQD 38
+G++P+ C C + + HL++H D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 32.7 bits (74), Expect = 3e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIH 36
E+P+KC CP+ + +SS ++ HLR H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.4 bits (74), Expect = 4e-04
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 1 MRNHIRTHTGEKPYKCTF 18
++ H++ H+ + Y C F
Sbjct: 19 LKEHMKLHSDTRDYICEF 36
Score = 21.2 bits (45), Expect = 8.7
Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 14 YKCT--FCPFTAAHSSTMSYHLRIH 36
+ C C + + H+++H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.0 bits (72), Expect = 7e-04
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIHQD 38
KPYKC C + AA SS+++ HLRIH D
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHSD 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.4 bits (72), Expect = 8e-04
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIH 36
+KP++C C + S ++ H+R H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.0 bits (68), Expect = 0.004
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIH 36
K + C CP S +S H++ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 21.1 bits (45), Expect = 7.0
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 1 MRNHIRTHTGEK 12
+ HI+TH +K
Sbjct: 18 LSKHIKTHQNKK 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.5 bits (67), Expect = 0.005
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIH 36
+ + C C A + H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 21.8 bits (47), Expect = 3.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 1 MRNHIRTHTGEK 12
++ H R+HT EK
Sbjct: 18 LKRHYRSHTNEK 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.8 bits (65), Expect = 0.012
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 9 TGEKPYKCTFCPFTAAHSSTMSYHLR-IH 36
+ KPY C C + ++ H++ +H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 28.0 bits (63), Expect = 0.020
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 2 RNHIRTHTGEKPYKC 16
+ + HT E+P+KC
Sbjct: 23 GHIKQVHTSERPHKC 37
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.8 bits (59), Expect = 0.089
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 3 NHIRTHTGEKPYKCTFCP--FTAAHSSTMSYHLRIH 36
+ +K ++C F T + H++ H
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.4 bits (59), Expect = 0.091
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLRIH 36
KPYKC C + +S + H RIH
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.1 bits (58), Expect = 0.11
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 11 EKPYKCTF--CPFTAAHSSTMSYHLRIH 36
++PY C C + + H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.3 bits (57), Expect = 0.12
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 42 KCPHCAYKCVKQKDLNTHIERRH 64
+C +C ++ +L THI+ +H
Sbjct: 4 QCQYCEFRSADSSNLKTHIKTKH 26
Score = 25.1 bits (54), Expect = 0.31
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLR 34
K Y+C +C F +A SS + H++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.4 bits (56), Expect = 0.20
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 12 KPYKCTF--CPFTAAHSSTMSYHLRIH 36
+P+ CT+ C S + H R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 22.3 bits (48), Expect = 3.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 1 MRNHIRTHTGEK 12
++ H RTHTGEK
Sbjct: 20 LQRHKRTHTGEK 31
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.8 bits (56), Expect = 0.21
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQ-DLKVKCPHCAYKCVKQKDLNTH 59
+K Y C C + H S H+ +H C C K + L H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 25.8 bits (56), Expect = 0.25
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIH 36
H+ H G +PY C C + H++IH
Sbjct: 18 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 24.6 bits (54), Expect = 0.35
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 12 KPYKCTF--CPFTAAHSSTMSYHLRIH 36
KP+KCTF C + + + HLR H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.6 bits (53), Expect = 0.39
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQ 37
EKPY C C MSYH+R H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHD 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 24.2 bits (53), Expect = 0.61
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 12 KPYKCTF--CPFTAAHSSTMSYHLRIH 36
+PY C C + S+ ++ H+RIH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 0.71
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 12 KPYKCTFCPFTAAHSSTMSYHLR-IHQDL 39
+P+KC +C F S +S H++ H D+
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGDM 29
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.6 bits (51), Expect = 0.92
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQ 37
EKP+ C C A S H +IH
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHL 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.1 bits (50), Expect = 1.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 12 KPYKCTF--CPFTAAHSSTMSYHLRIH 36
KP++CTF C + + H+RIH
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId:
562]}
Length = 312
Score = 24.9 bits (53), Expect = 1.4
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 1 MRNHIRTHTGEKPYKCTFCPFTAAHSSTMSYHLRIHQDLKVKCPHCAYK 49
+ + TG P C +CP ++ + + + + + ++ A
Sbjct: 39 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA 87
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 24.7 bits (53), Expect = 1.7
Identities = 9/59 (15%), Positives = 20/59 (33%)
Query: 25 HSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHIERRHMPGDVLGHIQQMLEIGHNM 83
++ S+ +++ + K + + H H G V +I LE +
Sbjct: 495 KATDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDP 553
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.8 bits (49), Expect = 1.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1 MRNHIRTHTGE 11
+ H+R HTGE
Sbjct: 23 LVVHMRRHTGE 33
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 40 KVKCPHCAYKCVKQKDLNTHIERRH 64
K CPHC ++ DL H+ ++H
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQH 26
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 22.0 bits (46), Expect = 3.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 14 YKCTFCPFTAAHSSTMSYHLRIHQD 38
YKC C + S +S H R+H++
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHKN 25
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 23.5 bits (50), Expect = 5.0
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 25 HSSTMSYHLRIHQDLKVKCPHCAYKCVKQKDLNTHIERRHMPGDVLGHIQQMLEIGHN 82
+++ + ++H K + + T H G V+ IQ LE +
Sbjct: 490 NATDNTLITKLHS----HFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKD 543
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.2 bits (45), Expect = 7.0
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 12 KPYKCTF--CPFTAAHSSTMSYHLRIH 36
+PY C F C A S+ + H+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 22.1 bits (47), Expect = 9.3
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 11 EKPYKCTFCPFTAAHSSTMSYHLRIHQDL 39
+ C FC A + H ++
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEHQF 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.135 0.450
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,313
Number of extensions: 12745
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 77
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)