BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10073
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           + C  CDY    S ++  H  IH  ++ FKC +C Y +    +L  H+++
Sbjct: 37  YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 37.0 bits (84), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 50  PQSCKHCKNFTSSDVNLLMEHSENCPCMVRPDPVKYKFICVACDYFTIISQNMRNHTLIH 109
           P  C  C        NLL   + NC  M R + V   F C  C         +R H + H
Sbjct: 35  PFECPKCGKCYFRKENLLEHEARNC--MNRSEQV---FTCSVCQETFRRRMELRLHMVSH 89

Query: 110 LGDKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
            G+  +KC  CS    QK+ LQ H+   HS
Sbjct: 90  TGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
           Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 35.8 bits (81), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 89  CVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKH 138
           C  C  F   +  +  H   H G+K +KC  C Y A QK  L++H++  H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 31.2 bits (69), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           + C  C      S N++ H   H G+K +KC  C     Q   LQ H +
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53



 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           + C  C      S +++ H   H G+K +KC  C     + + L  H +
Sbjct: 33  YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 30.4 bits (67), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 85  YKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           YK     CD+    S  +  H   H G K F+C +C+    + + L  H+K 
Sbjct: 46  YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 30.4 bits (67), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           +CD     S N+  H  IH G K F+C +C     + + L  H++
Sbjct: 11  SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 29.6 bits (65), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 53  CKHCKNFTSSDVNLLMEHSENCPCMVRPDPVKYKFICVACDYFTIISQNMRNHTLIHLGD 112
           CK C    +   NLL+   E      RP      + C  C        ++R+H  IH  +
Sbjct: 20  CKFCGRHFTKSYNLLIH--ERTHTDERP------YTCDICHKAFRRQDHLRDHRYIHSKE 71

Query: 113 KQFKCCLCSYGAYQKEKLQFH 133
           K FKC  C  G  Q   L  H
Sbjct: 72  KPFKCQECGKGFCQSRTLAVH 92



 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 80  PDPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFH 133
           P   K +FIC  C      S N+  H   H  ++ + C +C     +++ L+ H
Sbjct: 11  PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 29.6 bits (65), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           +CD       N+  H  IH G K F+C +C     Q+  L  H++
Sbjct: 11  SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
           Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 29.6 bits (65), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 102 MRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
           +R H  IH  D+ FKC  CS+   Q   L  H+K  H 
Sbjct: 25  LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 29.6 bits (65), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 88  ICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           +C  C    + S  ++ H L+H G+K F+C     G  ++  L F+++
Sbjct: 36  VCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFSLDFNLR 81


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 29.3 bits (64), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 50  PQSCKHC-KNFTSSDVNLLMEHSENCPCMVRPDPVKYKFICVACDYFTIISQNMRNHTLI 108
           P +C  C K+F+ SD   L EH        R    +  + C  C       +++  H   
Sbjct: 21  PYACPECGKSFSRSD--HLAEHQ-------RTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71

Query: 109 HLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           H G+K +KC  C     Q+  L+ H +
Sbjct: 72  HTGEKPYKCPECGKSFSQRANLRAHQR 98



 Score = 28.9 bits (63), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 81  DPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           +P +  + C  C      S ++  H   H G+K +KC  C      K+ L  H +
Sbjct: 16  EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70



 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           + C  C        N+  H   H G+K +KC  C     +++ L  H +
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182



 Score = 26.2 bits (56), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           + C  C        ++R H   H G+K +KC  C     +++ L  H +
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score = 29.3 bits (64), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           +CD     S  +  H  IH G K F+C +C     + + L  H++
Sbjct: 26  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 29.3 bits (64), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 78  VRPDPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
            RP P +Y      C        +M+ HT IH G+K  KC +C     Q   L  H +
Sbjct: 27  TRPYPCQY------CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           +CD     S ++  H  IH G K F+C +C     + + L  H++ 
Sbjct: 11  SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 90  VACDYFTIISQN---MRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           VAC+    I ++   +  H L H G+K + C +C     +K+++ +HV++
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57


>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.1 bits (61), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 113 KQFKCCLCSYGAYQKEKLQFHVKNKHSTK 141
           K FKC LC Y    K  L+ H+ N+HST+
Sbjct: 8   KPFKCSLCEYATRSKSNLKAHM-NRHSTE 35


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           +CD     S  +  H  IH G K F+C +C     + + L  H++ 
Sbjct: 10  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 55


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           +CD     S  +  H  IH G K F+C +C     + + L  H++ 
Sbjct: 11  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTKVKD 144
           F+C  C       ++++ H   H  +K + C LC+    +++ L  H +  HS  + +
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           +CD     S  +  H  IH G K F+C +C     + + L  H++ 
Sbjct: 11  SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           +CD     S  +  H  IH G K F+C +C     + + L  H++ 
Sbjct: 11  SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           +CD       N+  H  IH G K F+C +C     Q   L  H++
Sbjct: 11  SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 27.7 bits (60), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKN 136
           +CD     S ++  H  IH G K F+C +C     + + L  H++ 
Sbjct: 11  SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56


>pdb|1YA4|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 In
           Complex With Tamoxifen
 pdb|1YA4|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 In
           Complex With Tamoxifen
 pdb|1YA4|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 In
           Complex With Tamoxifen
 pdb|1YA8|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Cleavage Products Of Mevastatin
 pdb|1YA8|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Cleavage Products Of Mevastatin
 pdb|1YA8|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Cleavage Products Of Mevastatin
 pdb|1YAH|A Chain A, Crystal Structure Of Human Liver Carboxylesterase
           Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
           Analogue
 pdb|1YAH|B Chain B, Crystal Structure Of Human Liver Carboxylesterase
           Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
           Analogue
 pdb|1YAH|C Chain C, Crystal Structure Of Human Liver Carboxylesterase
           Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
           Analogue
 pdb|1YAJ|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|G Chain G, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|H Chain H, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|I Chain I, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|J Chain J, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|K Chain K, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|1YAJ|L Chain L, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Benzil
 pdb|2HRQ|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
           In Covalent Complex With The Nerve Agent Soman (gd)
 pdb|2HRQ|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
           In Covalent Complex With The Nerve Agent Soman (gd)
 pdb|2HRQ|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
           In Covalent Complex With The Nerve Agent Soman (gd)
 pdb|2HRQ|D Chain D, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
           In Covalent Complex With The Nerve Agent Soman (gd)
 pdb|2HRQ|E Chain E, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
           In Covalent Complex With The Nerve Agent Soman (gd)
 pdb|2HRQ|F Chain F, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
           In Covalent Complex With The Nerve Agent Soman (gd)
 pdb|2HRR|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
           In Covalent Complex With The Nerve Agent Tabun (Ga)
 pdb|2HRR|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
           In Covalent Complex With The Nerve Agent Tabun (Ga)
 pdb|2HRR|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
           In Covalent Complex With The Nerve Agent Tabun (Ga)
 pdb|4AB1|A Chain A, Recombinant Human Carboxylesterase 1 From Whole Cabbage
           Loopers
          Length = 532

 Score = 27.7 bits (60), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 10  VPLSTKKTCLYCNKYVPSDI 29
           +PL   + CLY N Y P+D+
Sbjct: 88  IPLKLSEDCLYLNIYTPADL 107


>pdb|1MX1|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Tacrine
 pdb|1MX1|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Tacrine
 pdb|1MX1|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Tacrine
 pdb|1MX1|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Tacrine
 pdb|1MX1|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Tacrine
 pdb|1MX1|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
           Complex With Tacrine
 pdb|1MX5|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Homatropine, A Cocaine Analogue
 pdb|1MX5|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Homatropine, A Cocaine Analogue
 pdb|1MX5|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Homatropine, A Cocaine Analogue
 pdb|1MX5|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Homatropine, A Cocaine Analogue
 pdb|1MX5|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Homatropine, A Cocaine Analogue
 pdb|1MX5|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Homatropine, A Cocaine Analogue
 pdb|1MX9|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|G Chain G, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|H Chain H, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|I Chain I, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|J Chain J, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|K Chain K, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
 pdb|1MX9|L Chain L, Crystal Structure Of Human Liver Carboxylesterase In
           Complexed With Naloxone Methiodide, A Heroin Analogue
          Length = 548

 Score = 27.7 bits (60), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 10  VPLSTKKTCLYCNKYVPSDI 29
           +PL   + CLY N Y P+D+
Sbjct: 90  IPLKLSEDCLYLNIYTPADL 109


>pdb|3K9B|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
           In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
 pdb|3K9B|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
           In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
 pdb|3K9B|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
           In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
          Length = 529

 Score = 27.7 bits (60), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 10  VPLSTKKTCLYCNKYVPSDI 29
           +PL   + CLY N Y P+D+
Sbjct: 85  IPLKLSEDCLYLNIYTPADL 104


>pdb|2DQY|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
           With Cholate And Palmitate
 pdb|2DQY|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
           With Cholate And Palmitate
 pdb|2DQY|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
           With Cholate And Palmitate
 pdb|2DQZ|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
           With Homatropine, Coenzyme A, And Palmitate
 pdb|2DQZ|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
           With Homatropine, Coenzyme A, And Palmitate
 pdb|2DQZ|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
           With Homatropine, Coenzyme A, And Palmitate
 pdb|2DR0|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
           With Taurocholate
 pdb|2DR0|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
           With Taurocholate
 pdb|2DR0|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
           With Taurocholate
 pdb|2H7C|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
           With Coenzyme A
 pdb|2H7C|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
           With Coenzyme A
 pdb|2H7C|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
           With Coenzyme A
 pdb|2H7C|D Chain D, Crystal Structure Of Human Carboxylesterase In Complex
           With Coenzyme A
 pdb|2H7C|E Chain E, Crystal Structure Of Human Carboxylesterase In Complex
           With Coenzyme A
 pdb|2H7C|F Chain F, Crystal Structure Of Human Carboxylesterase In Complex
           With Coenzyme A
          Length = 542

 Score = 27.7 bits (60), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 10  VPLSTKKTCLYCNKYVPSDI 29
           +PL   + CLY N Y P+D+
Sbjct: 90  IPLKLSEDCLYLNIYTPADL 109


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 86  KFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
           K+ C  C+    +++    H + H G+++++C  C       + +  H+K+ HS
Sbjct: 50  KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103


>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
           Complex With 4- Piperidino-Piperidine
          Length = 534

 Score = 27.3 bits (59), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 10  VPLSTKKTCLYCNKYVPSDI 29
           +PL   + CLY N Y P+D+
Sbjct: 86  IPLKFSEDCLYLNIYTPADL 105


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           + C  C        N+ +H  +H G+K ++C +C     +   L+ H +
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 26.2 bits (56), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKC 117
           F C  C      S +++ HT  H G+K F C
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 25.8 bits (55), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 91  ACDYFTIISQNMRNHTLIHLGDKQFKC 117
            C      S+N++ H   H G+K FKC
Sbjct: 97  GCGKIFARSENLKIHKRTHTGEKPFKC 123


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 25.8 bits (55), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 87  FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
           + CV C      S  +  H  +H G+K +KC  C     Q   L  H +
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,410,825
Number of Sequences: 62578
Number of extensions: 161278
Number of successful extensions: 502
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 82
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)