RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10073
         (144 letters)



>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 26.6 bits (59), Expect = 0.80
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 101 NMRNHTLIHLGDKQFKCCLCSY 122
           N+R H   H G+K +KC +C  
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGK 22


>gnl|CDD|220613 pfam10173, Mit_KHE1, Mitochondrial K+-H+ exchange-related.  The
          members of this family function as mitochondrial
          potassium-hydrogen exchange transporters. The family is
          part of a large mitochondrial KHE protein complex.
          Length = 184

 Score = 28.8 bits (65), Expect = 0.88
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 8  LLVPLSTKKTCLYCNK 23
           L+P++TK+  LYC  
Sbjct: 3  FLLPIATKRWLLYCKH 18


>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
           methyltransferase; Provisional.
          Length = 382

 Score = 28.0 bits (63), Expect = 2.0
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 32  FIGHCQTCPNMSFLNSVIPQSCKHCKNFTSS 62
           ++ +C  C     +  + P+ C  C     +
Sbjct: 243 YVYYCPKCLYREEVEGLPPEECPVCGGKFGT 273


>gnl|CDD|233113 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III.
           FabH in general initiate elongation in type II fatty
           acid synthase systems found in bacteria and plants. The
           two members of this subfamily from Bacillus subtilis
           differ from each other, and from FabH from E. coli, in
           acyl group specificity. Active site residues include
           Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is
           the site of acyl group attachment [Fatty acid and
           phospholipid metabolism, Biosynthesis].
          Length = 318

 Score = 27.3 bits (61), Expect = 3.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 16  KTCLYCNKYVPSDIDVFIGH 35
           +  L  N   P DID F+ H
Sbjct: 226 EETLEANGLDPEDIDWFVPH 245


>gnl|CDD|107037 PHA01514, PHA01514, O-antigen conversion protein C.
          Length = 485

 Score = 27.3 bits (60), Expect = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 107 LIHLGDKQFKCCLCSYGAYQKEKL 130
           LI +G   F CCLC + A++ ++L
Sbjct: 323 LIGMGGFMFFCCLCVFYAFEDKQL 346


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,550,182
Number of extensions: 518382
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 21
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)