RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10073
(144 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 36.7 bits (86), Expect = 2e-04
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 87 FICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKH 138
C C Y +R H IH D+ FKC CS+ Q L H+K K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KF 60
Score = 25.5 bits (57), Expect = 2.2
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 103 RNHTLIHLGDKQFKCCLCSYGAYQKEKLQFH 133
+ + KC CSY K L+ H
Sbjct: 2 SSGS----SGHPEKCSECSYSCSSKAALRIH 28
Score = 25.2 bits (56), Expect = 3.3
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 85 YKFICVACDYFTIISQNMRNHTLIHLGDKQFKCC 118
+K C C + T N+ H GD
Sbjct: 38 FK--CNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 32.8 bits (75), Expect = 0.007
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 87 FICVACDYFTIISQNMRNHTLIH---LGDKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
C C + ++ H H + +F C C + + + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.0 bits (72), Expect = 0.010
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 86 KFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTK 141
K+IC C ++ H H + + C C++ K L H+K+K +K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.8 bits (74), Expect = 0.011
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 52 SCKHCKNFTSSDVNLLMEHSENCPCMVRPDPVKYKFICVACDYFTIISQNMRNHTL-IHL 110
CK+C F + D+N+ H ++ V + ++CV C++ T + H L H
Sbjct: 20 ECKYC-TFQTPDLNMFTFHVDSEHPNVVLNSS---YVCVECNFLTKRYDALSEHNLKYHP 75
Query: 111 GDKQFKC 117
G++ FK
Sbjct: 76 GEENFKL 82
Score = 27.0 bits (59), Expect = 1.4
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 86 KFICVACDYFTIISQNMRNH-TLIHLG---DKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
+ C C + T H H + + C C++ + + L H H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.059
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 8 LLVPLSTKKTCLYCNKYVPSDIDV--FIGHCQTCPNMSFLNSVIPQSC 53
L L +T L K +++ ++ + P+ +L S IP SC
Sbjct: 194 TLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-IPISC 238
Score = 26.6 bits (58), Expect = 3.6
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 16/40 (40%)
Query: 20 YCNKYVPSDIDVFIGHCQTCPNMSFLNS----VI---PQS 52
N ++P+ V I S +N V+ PQS
Sbjct: 355 KTNSHLPAGKQVEI---------SLVNGAKNLVVSGPPQS 385
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.45
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 15/71 (21%)
Query: 5 EQCLLVPLSTKKTCLYCNKYVPSDIDVFIGHCQ---TCPNMSFLNSVIPQSCKHCKNFTS 61
E CLLV L N + F C+ T + + + H +
Sbjct: 244 ENCLLV-LL--------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH---ISL 291
Query: 62 SDVNLLMEHSE 72
++ + E
Sbjct: 292 DHHSMTLTPDE 302
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 28.7 bits (64), Expect = 0.61
Identities = 6/87 (6%), Positives = 15/87 (17%), Gaps = 6/87 (6%)
Query: 16 KTCLYCNKYVPSDIDVFIGHCQTCPNMSFLNSVIPQSCKHCKNFTSSDVNLLMEHSENCP 75
+ + + +M ++ P
Sbjct: 98 QISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWP 157
Query: 76 CMVRPDPVKYKFICVACDYFTIISQNM 102
+ DY+ +I M
Sbjct: 158 FHHPVNKKFVP------DYYKVIVNPM 178
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 27.8 bits (61), Expect = 0.71
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 99 SQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
+ + + I G +F+C CS +L H+
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 25.9 bits (56), Expect = 3.7
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 79 RPDPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFH-VKNK 137
D + +++ K KC C + + L H +K K
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Query: 138 HSTKV 142
H KV
Sbjct: 105 HYQKV 109
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 26.1 bits (58), Expect = 0.87
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 105 HTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
T G K F+C C + + L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 26.4 bits (59), Expect = 1.1
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 87 FICVACD-YFTIISQNMRNH--TLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKH 138
+ C C +T IS N H T K + C C +K+ + HVK H
Sbjct: 11 YRCKVCSRVYTHIS-NFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 25.2 bits (56), Expect = 3.0
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 108 IHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTKVK 143
G+ ++C +CS H H VK
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK 39
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 25.7 bits (56), Expect = 1.4
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 79 RPDPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCS 121
+ + C C ++ H L H G+K + S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 113 KQFKCCLCSYGAYQKEKLQFHVKNKHSTK 141
K FKC LC Y K L+ H+ N+HST+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM-NRHSTE 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 26.8 bits (58), Expect = 2.0
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 40 PNMSFLNSVIPQSCKHCKNFTSSDVNLLMEHSENCPCMVRPDPVKYKFICVACDYFTIIS 99
P L I ++ H L + +F+C C S
Sbjct: 37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRLLAS---------KAISQFVCPLCLMPFSSS 87
Query: 100 QNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
+++ H K C +C + HV KH+
Sbjct: 88 VSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVCKKHN 125
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 25.6 bits (57), Expect = 2.5
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 99 SQNMRNHTLIHLGDKQFKC--CLCSYG 123
++++ H +H + + C S G
Sbjct: 53 KKHLKEHMKLHSDTRDYICEFSGPSSG 79
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 26.9 bits (60), Expect = 2.8
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 18/66 (27%)
Query: 78 VRPDPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKC--C----------LCSYGAY 125
+RP VK F C C ++Q+ T C C +
Sbjct: 126 IRPRIVKAVFECRGCMRHHAVTQSTNMITEPS------LCSECGGRSFRLLQDESEFLDT 179
Query: 126 QKEKLQ 131
Q KLQ
Sbjct: 180 QTLKLQ 185
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 26.9 bits (60), Expect = 2.8
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 12/66 (18%)
Query: 78 VRPDPVKYKFICVACDYFTIISQNMR--NHTLIHLGDKQFKCC----------LCSYGAY 125
V+ K + + D ++ + KC +
Sbjct: 127 VKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDW 186
Query: 126 QKEKLQ 131
QK +Q
Sbjct: 187 QKAVIQ 192
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 3.7
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 84 KYKFICVACDYFTIIS-QNMRNHTLI-HLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTK 141
+ + +C C+ T + ++ H + KC C K L +H +HS K
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 142 VKD 144
D
Sbjct: 82 PSD 84
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 24.8 bits (55), Expect = 4.5
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 101 NMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTKVK 143
+ + H G+K ++C +C Q ++ H+ KH+ V
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA 44
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 25.2 bits (54), Expect = 5.6
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 84 KYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTK 141
K C C + + + + F C C +++HV H++
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 24.6 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 99 SQNMRNHTLIHLGDKQFKCCLC 120
S + IHLGD+ KC C
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKC 24
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 6.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 87 FICVACDYFTIISQNMRNHTLIHLGDK 113
+ C C Y + I N+ H H G+K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 23.8 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 99 SQNMRNHTLIHLGDKQFKCCLCS 121
S + H IH G K F+C +C
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICM 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.463
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,078,320
Number of extensions: 106600
Number of successful extensions: 738
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 147
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.4 bits)