RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10073
(144 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.6 bits (67), Expect = 0.017
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 108 IHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTKV 142
H G+K ++C +C Q ++ H+ KH+ V
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.0 bits (60), Expect = 0.14
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 105 HTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
T G K F+C C + + L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 27.0 bits (60), Expect = 0.14
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 105 HTLIHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
+++KC C L H +
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.15
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 108 IHLGDKQFKCCLCSYGAYQKEKLQFHVKNKHSTK 141
H G+K + C C QK+ L H K H
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.4 bits (59), Expect = 0.17
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 108 IHLGDKQFKCCLCSYGAYQKEKLQFHVK 135
IH G+K + C C + L H +
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQR 28
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 23.4 bits (51), Expect = 2.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 112 DKQFKCCLCSYGAYQKEKLQFHVKNKHS 139
K + C C G + + L H+K H+
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 22.3 bits (48), Expect = 6.9
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 87 FICVACDYFTIISQNMRNHT-LIHLGDKQFKC 117
+IC +C ++ H +H ++ KC
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.5 bits (51), Expect = 2.9
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 85 YKFICVACDYFTIISQNMRNHTLIHLGDKQFKC 117
+ AC ++++ H +H + + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.1 bits (49), Expect = 2.9
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 112 DKQFKCCLCSYGAYQKEKLQFHVK 135
++ FKC +C Y + +L H++
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR 24
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 23.2 bits (50), Expect = 3.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 109 HLGDKQFKCCLCSYGAYQKEKLQFHVK 135
G + F C +C K H+K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 25.1 bits (53), Expect = 3.9
Identities = 14/120 (11%), Positives = 25/120 (20%), Gaps = 17/120 (14%)
Query: 18 CLYCNKYVPSDID--------VFI---GHCQTCPNMSFLNSVIPQSCKHCKNFTSSDVN- 65
CL N P ++I G P + ++ +S K VN
Sbjct: 97 CLTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNY 156
Query: 66 -LLMEHSENCPCMVRPDPVKYKFICVACDYFTIISQNMRNHTLIHLGDKQFKCCLCSYGA 124
+ + + N + S G+
Sbjct: 157 RVASWGFLAGDDIKAEGSGNAGLKDQRLG----MQWVADNIAGFGGDPSKVTIFGESAGS 212
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 24.9 bits (54), Expect = 3.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 18 CLYCNKYVPSDIDVFIGHCQT 38
C C KYV DI+ H +
Sbjct: 149 CEECGKYV--DIENLEAHLRE 167
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 25.1 bits (53), Expect = 4.0
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 18 CLYCNKYVPSDIDVFIGHCQTCPNMSFLNSVIPQSCKHCKNFTSSDVNLLMEHSENCPCM 77
CLY N + P+ + G H N ++ L P +
Sbjct: 91 CLYINVWAPAKARLRHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGL--------PIL 142
Query: 78 V 78
+
Sbjct: 143 I 143
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.3 bits (47), Expect = 6.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 113 KQFKCCLCSYGAYQKEKLQFHVKNKH 138
+ FKC CS+ Q L H+K H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.0 bits (46), Expect = 7.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 113 KQFKCCLCSYGAYQKEKLQFHVKNKHS 139
K ++C C + + L+ H+K KHS
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 22.2 bits (47), Expect = 8.4
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 104 NHTLIHLGDKQFKCCLCSYG 123
+ + + DK F+C
Sbjct: 8 DKYVKEMPDKTFECLFPGCT 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.137 0.463
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 557,874
Number of extensions: 25472
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 57
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.1 bits)