BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10074
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 86/221 (38%), Gaps = 39/221 (17%)
Query: 182 FCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNI 241
F SS + GEKPY C C ++ L +H
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH----------------------- 40
Query: 242 KKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKY 301
+R H +C C F DK L H R HTGEKP+ C C +
Sbjct: 41 --------QRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRA 91
Query: 302 DLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLE 361
+L +H R HT EK Y C C K F L+ HQ T ++ ++C ECG +F E
Sbjct: 92 NLRAHQ-RTHTG----EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146
Query: 362 KTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
L H R TH E P+ CP C R+ L H R HT
Sbjct: 147 DNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQ-RTHT 185
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 74/198 (37%), Gaps = 37/198 (18%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVN 231
Y C C S H+ +H R H GEKPY C C + K DL +H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH------------- 68
Query: 232 IVMNSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
+R H +C C F + L+ H R HTGEKP+ C
Sbjct: 69 ------------------QRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACP 109
Query: 292 YCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHEC 351
C + +H+ R H EK Y C C K F L HQ T ++ ++C
Sbjct: 110 ECG----KSFSQLAHL-RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 352 SECGFTFFLEKTLRAHIR 369
ECG +F L H R
Sbjct: 165 PECGKSFSRRDALNVHQR 182
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/236 (19%), Positives = 73/236 (30%), Gaps = 69/236 (29%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRSTQDILQHG 110
Y C C + + ++ +H R H G++P+ C C + F +D+ +H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE-----------CGKSFS-DKKDLTRHQ 69
Query: 111 KVCNFAPRSDANFNFVCILCNYHIPCKWCKYCKTKLDNNTEVLLQHCKLCVNVIRPDVSY 170
+ + C C + Q L +
Sbjct: 70 RT------HTGEKPYKCPECG-------------------KSFSQRANLRAHQRTHTGEK 104
Query: 171 RYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFV 230
Y C C +H++ H R H GEKPY C C +++ +L H
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH------------ 152
Query: 231 NIVMNSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEK 286
+R H +C C F + L +H R HTG+K
Sbjct: 153 -------------------QRTHTGEKPYKCPECGKSFSRRDALNVH-QRTHTGKK 188
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 8 QLIHAAD--IKCCHCNKYISSDLRDLLEHCRLCPAMTRTDLLKHKYVCYACSYATYYNGN 65
Q H + KC C K S D +DL H RT + Y C C + N
Sbjct: 41 QRTHTGEKPYKCPECGKSFS-DKKDLTRH-------QRTHTGEKPYKCPECGKSFSQRAN 92
Query: 66 MKKHLRIHLGDRPFMC 81
++ H R H G++P+ C
Sbjct: 93 LRAHQRTHTGEKPYAC 108
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 65/205 (31%), Gaps = 47/205 (22%)
Query: 17 CCHCNKYIS-SDLRDLLEHCRLCPAMTRTDLLKHKYVCYACSYATYYNGNMKKHLRIHLG 75
C C K S SD L EH RT + Y C C + ++ +H R H G
Sbjct: 24 CPECGKSFSRSD--HLAEH-------QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 76 DRPFMCTLLICQYCLICQYCNQYFVRSTQDILQHGKVCNFAPRSDANFNFVCILCNYHIP 135
++P+ C C + F + ++ H + + C C
Sbjct: 75 EKPYKCPE-----------CGKSFSQRA-NLRAHQRT------HTGEKPYACPECGKSF- 115
Query: 136 CKWCKYCKTKLDNNTEVLLQHCKLCVNVIRPDVSYRYVCFTCDYHSFCSSHMKDHIRVHL 195
L H + + Y+ C C ++ H R H
Sbjct: 116 ----------------SQLAHLRAHQRTHTGEKPYK--CPECGKSFSREDNLHTHQRTHT 157
Query: 196 GEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +++ L H R
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQR 182
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 257 TKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEV 316
+ C C +F K LK+H RKHTGEKPF C C K +L H R ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS- 63
Query: 317 LEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETH 372
E+ + C +C + F EL+ H + + ++CS C F +K L++H+ + H
Sbjct: 64 -EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 29/140 (20%)
Query: 174 CFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIV 233
C TC ++K H R H GEKP+ C C K + RK++ ++H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG---------KCYFRKENLLEH------ 54
Query: 234 MNSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ CM R + C +C F ++ L++H M HTGE P+ C C
Sbjct: 55 ------EARNCMNRSEQVF-------TCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSC 100
Query: 294 DYICRTKYDLSSHIGRKHTD 313
K DL SH+ + H+
Sbjct: 101 SQQFMQKKDLQSHMIKLHSG 120
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 36/138 (26%)
Query: 177 CDYHSFCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVM 234
C+ F SH++ H R H GEKPY C + C R ++ LK+H R+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR------------- 60
Query: 235 NSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCD 294
H + +C+ C +F LK H R HTGEKPF C +
Sbjct: 61 ------------------HTGVKPFQCKTCQRKFSRSDHLKTHT-RTHTGEKPFSCRWPS 101
Query: 295 YICRTKYDLSSHIGRKHT 312
C+ K+ S + R H
Sbjct: 102 --CQKKFARSDELVRHHN 117
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 54/135 (40%), Gaps = 35/135 (25%)
Query: 264 CDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
C+ R+F L+MH RKHTGEKP+ C + D
Sbjct: 14 CNKRYFKLSHLQMHS-RKHTGEKPYQCDFKD----------------------------- 43
Query: 324 QLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC--P 381
C ++F S +LK HQ + +C C F L+ H R TH E PF C P
Sbjct: 44 --CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWP 100
Query: 382 FCEYKAKRKFELKSH 396
C+ K R EL H
Sbjct: 101 SCQKKFARSDELVRH 115
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKH 218
+ C TC S H+K H R H GEKP+ C + C + + +L +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 41 MTRTDLLKH---------KYVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQ 87
+R+D LK + C C + ++K H R H G++PF C CQ
Sbjct: 48 FSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 317 LEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKET 376
+EK Y C C K F S L+ HQ T ++ ++C ECG +F L+ H R TH E
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEK 59
Query: 377 PFPCPFCEYKAKRKFELKSHMK 398
P+ CP C R L H +
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQR 81
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C C SS+++ H R H GEKPY C C +Q SDL+KH R
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEK 319
+C C F L+ H R HTGEKP+ C C DL H R HT EK
Sbjct: 6 KCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQ-RTHTG----EK 59
Query: 320 RYVCQLCPKQFLTSGELKYHQTTVHRKR 347
Y C C K F S L HQ T K+
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 285 EKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
EKP+ C C + SS++ +KH EK Y C C K F S +L+ HQ T
Sbjct: 2 EKPYKCPECGKS----FSQSSNL-QKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 345 RKRVHECSECGFTFFLEKTLRAHIR 369
++ ++C ECG +F L H R
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 36/113 (31%)
Query: 197 EKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHLNI 256
EKPY C C +Q S+L+KH +R H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-------------------------------QRTHTGE 30
Query: 257 TKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGR 309
+C C F L+ H R HTGEKP+ C C + S H+ R
Sbjct: 31 KPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKCPECGKS----FSRSDHLSR 78
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C C SS ++ H R H GEKPY C C ++ L +H R
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 16 KCCHCNKYISSDLRDLLEHCRLCPAMTRTDLLKHKYVCYACSYATYYNGNMKKHLRIHLG 75
KC C K S +L +H RT + Y C C + + +++KH R H G
Sbjct: 6 KCPECGKSFSQSS-NLQKH-------QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Query: 76 DRPFMC 81
++P+ C
Sbjct: 58 EKPYKC 63
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 47 LKHKYVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
++ Y C C + + N++KH R H G++P+ C
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKC 35
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEK 319
+CE+C F K LK H MR HTG KP+ C CDY L+ H+ R H+D E+
Sbjct: 10 KCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSD----ER 63
Query: 320 RYVCQLCPKQFLTSGELKYH 339
+ CQ+CP S +L H
Sbjct: 64 PFKCQICPYASRNSSQLTVH 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C TCDY + SS + H+R+H E+P+ C C Y S L HLR
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLS 304
+K H+ R H + +C+ CD D L H +R H+ E+PF C C Y R L+
Sbjct: 24 LKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLT 81
Query: 305 SHIGRKHT 312
H+ R HT
Sbjct: 82 VHL-RSHT 88
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 323 CQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPF 382
C++C K F +LK H + ++C C + +L H+R H E PF C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQI 69
Query: 383 CEYKAKRKFELKSHMKRKHTFEDSLTT 409
C Y ++ +L H+ R HT + ++
Sbjct: 70 CPYASRNSSQLTVHL-RSHTGDSGPSS 95
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQY 88
Y C C YA + ++ KHLRIH +RPF C IC Y
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPY 72
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMK 398
H+C CG F + L+ H+R H P+ C C+Y A L H++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 262 ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRY 321
E CD RF K L H+ R HTG+KPF C C + L++HI R HT EK +
Sbjct: 10 ESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHI-RTHTG----EKPF 63
Query: 322 VCQLCPKQFLT 332
C +C ++F T
Sbjct: 64 ACDICGRKFAT 74
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
+CD +++ HIR+H G+KP+ C C +Q++ L H+R
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 34/99 (34%)
Query: 197 EKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHL 254
E+PY C C R +QK++L H+R IH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-------------------------------IHT 30
Query: 255 NITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+C +C F + L H+ R HTGEKPF C C
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHI-RTHTGEKPFACDIC 68
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F L H ++ +C C F + +L AHIR TH
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTG 59
Query: 375 ETPFPCPFCEYK 386
E PF C C K
Sbjct: 60 EKPFACDICGRK 71
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRC----TQKSDLKKHLRKK 222
+ C C + + + HIR H GEKP+ C C + T+ K HLR+K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTL 83
++ Y C +C N+ H+RIH G +PF C +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI 39
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 262 ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRY 321
E CD RF L H+ R HTG+KPF C C L++HI R HT EK +
Sbjct: 10 ESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----EKPF 63
Query: 322 VCQLCPKQFLTSGELKYHQTTVH 344
C +C ++F S E K H T +H
Sbjct: 64 ACDICGRKFARSDERKRH-TKIH 85
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F SG L H ++ +C C F L HIR TH
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 375 ETPFPCPFCEYKAKRKFELKSHMK 398
E PF C C K R E K H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD S + HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 71 KFARSDER--KRHT-KIHL 86
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYC--------------- 89
++ Y C +C +G++ +H+RIH G +PF C + + +
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 90 --LICQYCNQYFVRSTQ 104
C C + F RS +
Sbjct: 61 KPFACDICGRKFARSDE 77
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 321 YVCQLCPKQFLTSGELKYHQTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHRKETPF 378
+VC C K F+ S +LK HQ ++ +C+ CG F L+ LR H+R H + P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 379 PCPF--CEYKAKRKFELKSHM 397
CPF C K + LKSH+
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHI 114
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 239 TNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYI 296
+ ++K + H R+H+ C C F + LK H + HTGEKPF C + C
Sbjct: 21 SAMRKHLHTHGPRVHV------CAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKR 73
Query: 297 CRTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKYHQTT 342
++L +H+ R HT ++ YVC C K+F S LK H T
Sbjct: 74 FSLDFNLRTHV-RIHTG----DRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 317 LEKRYVC---QLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHR 373
+E R + + C K F + ++ H T H RVH C+ECG F L+ H + H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH-QLVHT 58
Query: 374 KETPFPCPF--CEYKAKRKFELKSHMK 398
E PF C F C + F L++H++
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLR 220
+VC C SS +K H VH GEKP+ C + C R + +L+ H+R
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 24/88 (27%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLIC--QYCL-----------------I 91
+VC C A + +K+H +H G++PF CT C ++ L +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 92 CQY--CNQYFVRSTQ---DILQHGKVCN 114
C + CN+ F +ST IL H K N
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 187 MKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHL 219
++ H+R+H G++PY+C + C + Q ++LK H+
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 37/128 (28%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKK 243
+S M+ H+ H G + ++C C + S LK+H
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH------------------------- 53
Query: 244 CMKRHVERIHLNITKTRC--ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRT 299
+ +H +C E C RF L+ HV R HTG++P+ C + C+
Sbjct: 54 ------QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQ 106
Query: 300 KYDLSSHI 307
+L SHI
Sbjct: 107 STNLKSHI 114
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 166 PDVSYRYVCFTCDYHS-----FCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKH 218
PD+ R + + CDY SSH+K H+R H GEKPY C + C +R + +L +H
Sbjct: 8 PDLEKRRIHY-CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 219 LRKKHEVK--HCFVNIVMNSYGTNIKKCMKRH 248
RK K C V S ++ MKRH
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 55 ACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRSTQDILQHGKVCN 114
C+ + ++K HLR H G++P+ CT + C+ F RS + + K
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTW---------EGCDWRFARSDELTRHYRKHTG 72
Query: 115 FAPRSDANFNFVCILCN 131
P F C +CN
Sbjct: 73 AKP-------FQCGVCN 82
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 308 GRKHTDKEVLEKRYV----CQLCPKQFLTSGELKYHQTTVHRKRVHECS--ECGFTFFLE 361
G + LEKR + C K + S LK H T ++ ++C+ C + F
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARS 60
Query: 362 KTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKR 399
L H R+ H PF C C R L HMKR
Sbjct: 61 DELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 291 HYCDYICRTK-YDLSSHIGRKHTDKEVLEKRYVC--QLCPKQFLTSGELKYHQTTVHRKR 347
HYCDY TK Y SSH+ + H EK Y C + C +F S EL H +
Sbjct: 16 HYCDYPGCTKVYTKSSHL-KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 348 VHECSECGFTFFLEKTLRAHIR 369
+C C +F L H++
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMK 96
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKH 401
ECS CG F L H+R TH E P+ C FCEY A +K L+ H++R H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 186 HMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHE 224
++ H+R H GEKPY C +C Y QK+ L+ HL + H+
Sbjct: 19 YLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKH 311
C C F L +H +R HTGEKP+ C +C+Y K L H+ R H
Sbjct: 7 CSYCGKFFRSNYYLNIH-LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYH 339
R HTGEKP+ C +CD R K L H R H D + +VC C K F + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH-DPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNI--KKCMKRHV 249
R H GEKPY C +C QK L H ++ H+ V + G + M RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 250 E 250
+
Sbjct: 68 D 68
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 251 RIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGE-KPFHCHYCDYICRTKYDLSSHIGR 309
R H C +C RF +KMH+++KHT FHC +CD + K DL H+ +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 310 KHT 312
+H+
Sbjct: 68 QHS 70
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 29/96 (30%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVER 251
R H GEKPY C C R TQ +K H+ +++H E
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHI-------------------------LQKHTE- 41
Query: 252 IHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKP 287
N+ K C CD K L +H+ ++H+ P
Sbjct: 42 ---NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 346 KRVHECSECGFTFFLEKTLRAHIRETHRKETP-FPCPFCEYKAKRKFELKSHMKRKHTFE 404
++ +EC C F T++ HI + H + F CP C+ RK +L H++++H++
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 405 D 405
Sbjct: 73 G 73
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 304 SSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHE--CSECGFTFFLE 361
S GR H+ EK Y C +C +F SG +K H H + V + C C +
Sbjct: 3 SGSSGRTHSG----EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 362 KTLRAHIRETHRKETP 377
L H+R+ H P
Sbjct: 59 SDLGVHLRKQHSYSGP 74
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 273 GLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSS----HIGRKHTD 313
G R H+GEKP+ C YIC ++ S HI +KHT+
Sbjct: 1 GSSGSSGRTHSGEKPYEC----YICHARFTQSGTMKMHILQKHTE 41
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 257 TKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEV 316
+ CE+C F D L H + H+GEKP+ C C + K +S H+ R H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGS-- 61
Query: 317 LEKRYVCQLCPKQFLTSGELKYHQTTVH 344
+ K Y+CQ C K F L H VH
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 322 VCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRE-THRKETPFPC 380
C++C K F L H+ + ++ + C CG F + + H+R P+ C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 381 PFCEYKAKRKFELKSHMKRKHTFEDS 406
C R L H+K+ H+ S
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 186 HMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
H+ H H GEKPY C C R +K + H+R
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 171 RYVCFTCDYHSFC------SSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
R TCDY + C SSH+K H+R H GEKPY C + C ++ + +L +H RK
Sbjct: 3 RTATHTCDY-AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 326 CPKQFLTSGELKYHQTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHRKETPFPCPFC 383
C K + S LK H T ++ + C CG+ F L H R+ H PF C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 72
Query: 384 EYKAKRKFELKSHMKR 399
+ R L HMKR
Sbjct: 73 DRAFSRSDHLALHMKR 88
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 24/75 (32%)
Query: 52 VCYACSYA----TYY-NGNMKKHLRIHLGDRPFMCTLLICQYCLI--------------- 91
+ C YA TY + ++K HLR H G++P+ C C +
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 92 ----CQYCNQYFVRS 102
CQ C++ F RS
Sbjct: 65 RPFQCQKCDRAFSRS 79
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 245 MKRHVERIHLNITKTRCEL--CDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYD 302
+K H+ R H C+ C +F L H RKHTG +PF C CD
Sbjct: 24 LKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHRPFQCQKCDRAFSRSDH 81
Query: 303 LSSHIGR 309
L+ H+ R
Sbjct: 82 LALHMKR 88
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 171 RYVCFTCDYHSFC------SSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
R TCDY + C SSH+K H+R H GEKPY C + C ++ + +L +H RK
Sbjct: 2 RTATHTCDY-AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 326 CPKQFLTSGELKYHQTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHRKETPFPCPFC 383
C K + S LK H T ++ + C CG+ F L H R+ H PF C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 71
Query: 384 EYKAKRKFELKSHMKR 399
+ R L HMKR
Sbjct: 72 DRAFSRSDHLALHMKR 87
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 24/75 (32%)
Query: 52 VCYACSYA----TYY-NGNMKKHLRIHLGDRPFMCTLLICQYCLI--------------- 91
+ C YA TY + ++K HLR H G++P+ C C +
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 92 ----CQYCNQYFVRS 102
CQ C++ F RS
Sbjct: 64 RPFQCQKCDRAFSRS 78
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 262 ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGR 309
+ C +F L H RKHTG +PF C CD L+ H+ R
Sbjct: 41 DGCGWKFARSDELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 171 RYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKK 222
+Y+C C S +K HIR H +PY C YC + K +L KH++ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKE 315
CE C +R LK H+ R HT +P+HC YC++ +TK +L+ H+ K K+
Sbjct: 4 CEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 351 CSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRK 400
C ECG L+ HIR TH P+ C +C + K K L HMK K
Sbjct: 4 CEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 50 KYVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
KY+C C +KKH+R H RP+ CT
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCT 33
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 24/49 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C C SS + H RVH GEKPY C+ C +Q S L H R
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIR 369
EK Y C C K F S L HQ ++ ++C ECG F L H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 281 KHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKY 338
KHTGEKPF C + C + H+ R H+ EK + C C +F T +K
Sbjct: 36 KHTGEKPFPCK--EEGCEKGFTSLHHLTR-HSLTHTGEKNFTCDSDGCDLRFTTKANMKK 92
Query: 339 HQTTVHRKR--VHEC--SECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELK 394
H H + V+ C CG F L+ H + +H ++ P+ CP ++F L
Sbjct: 93 HFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECP--HEGCDKRFSLP 149
Query: 395 SHMKR 399
S +KR
Sbjct: 150 SRLKR 154
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 6/133 (4%)
Query: 186 HMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKK 243
H+ H H GEK + C C R T K+++KKH + H +K C + G KK
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 244 CMKRHVERI-HLNITKTRC--ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTK 300
+ V + H C E CD RF LK H + H G C ++ +T
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTW 177
Query: 301 YDLSSHIGRKHTD 313
H+ H D
Sbjct: 178 TLYLKHVAECHQD 190
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 166 PDVSYRYVCFTCDYHSFCSSHMK--DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
P V RY+C D + + + K H+ H GEKP+ C +K H +H
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP---CKEEGCEKGFTSLHHLTRH 63
Query: 224 EVKHCFV-NIVMNSYGTNI----KKCMKRHVERIH-LNITKTRC--ELCDLRFFDKVGLK 275
+ H N +S G ++ K MK+H R H + I C E C F LK
Sbjct: 64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLK 123
Query: 276 MHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGR 309
+H HT + P+ C + C ++ L S + R
Sbjct: 124 VHQF-SHTQQLPYECPH--EGCDKRFSLPSRLKR 154
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F S EL H ++ +C C F L HIR TH
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 375 ETPFPCPFCEYKAKRKFELKSHMK 398
E PF C C K R E K H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD S+ + HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 71 KFARSDER--KRHT-KIHL 86
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ RH+ RIH +C +C F L H+ R HTGEKPF C C
Sbjct: 22 LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 68
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYC--------------- 89
++ Y C +C + + +H+RIH G +PF C + + +
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 90 --LICQYCNQYFVRSTQ 104
C C + F RS +
Sbjct: 61 KPFACDICGRKFARSDE 77
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 182 FCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLR 220
F SSH+K H R H GEKP+ C + C R + +L +H R
Sbjct: 30 FKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 340 QTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHRKETPFPCPF--CEYKAKRKFELKS 395
Q R R H CS CG T+F L+AH R TH E PF C + CE + R EL
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSR 67
Query: 396 HMK 398
H +
Sbjct: 68 HRR 70
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 55 ACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQ 87
C + + ++K H R H G++PF C+ C+
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCE 56
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 264 CDLRFFDKVGLKMHVMRKHTGEKPFHCHY 292
C +F LK H R HTGEKPF C +
Sbjct: 25 CGKTYFKSSHLKAHT-RTHTGEKPFSCSW 52
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F S EL H ++ +C C F L HIR TH
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 375 ETPFPCPFCEYKAKRKFELKSHMK 398
E PF C C K R E K H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD S + HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 71 KFARSDER--KRHT-KIHL 86
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ RH+ RIH +C +C F L H+ R HTGEKPF C C
Sbjct: 22 LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 68
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYC--------------- 89
++ Y C +C + + +H+RIH G +PF C + + +
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 90 --LICQYCNQYFVRSTQ 104
C C + F RS +
Sbjct: 61 KPFACDICGRKFARSDE 77
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 34/99 (34%)
Query: 197 EKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHL 254
E+PY C C R +QK++L H+R IH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-------------------------------IHT 30
Query: 255 NITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+C +C F GL H+ R HTGEKPF C C
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHI-RTHTGEKPFACDIC 68
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
+CD +++ HIR+H G+KP+ C C +Q + L +H+R
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 187 MKDHIRVHLGEKPYMCIYCAYRC----TQKSDLKKHLRKK 222
+ HIR H GEKP+ C C + T+ K HLR+K
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F L H ++ +C C F L HIR TH
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTG 59
Query: 375 ETPFPCPFCEYK 386
E PF C C K
Sbjct: 60 EKPFACDICGRK 71
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTL 83
++ Y C +C N+ H+RIH G +PF C +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI 39
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F S +L H ++ +C C F L HIR TH
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 375 ETPFPCPFCEYKAKRKFELKSHMK 398
E PF C C K R E K H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD S+ + HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 71 KFARSDER--KRHT-KIHL 86
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ RH+ RIH +C +C F L H+ R HTGEKPF C C
Sbjct: 22 LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 68
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 19/77 (24%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYC--------------- 89
++ Y C +C + ++ +H+RIH G +PF C + + +
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 90 --LICQYCNQYFVRSTQ 104
C C + F RS +
Sbjct: 61 KPFACDICGRKFARSDE 77
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRK 374
+E+ Y C + C ++F S L H ++ +C C F L HIR TH
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 375 ETPFPCPFCEYKAKRKFELKSHMK 398
E PF C C K R E K H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD SS++ HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 71 KFARSDER--KRHT-KIHL 86
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ RH+ RIH +C +C F L H+ R HTGEKPF C C
Sbjct: 22 LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 68
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 19/77 (24%)
Query: 47 LKHKYVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYC--------------- 89
++ Y C +C + N+ +H+RIH G +PF C + + +
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 90 --LICQYCNQYFVRSTQ 104
C C + F RS +
Sbjct: 61 KPFACDICGRKFARSDE 77
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKH 218
SS + H+ +H +PY C YC R QKSD+KKH
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRK 221
Y C C S MK H +H GEKP+ C C +Q S+L H RK
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 252 IHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKH 311
IH + C+ C RF K +K H HTGEKP C C +L +H RKH
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Query: 312 TD 313
T
Sbjct: 81 TG 82
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 288 FHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKR 347
F C C + LS+H+ H+D + Y CQ C K+F ++K H ++
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSD----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 348 VHECSECGFTFFLEKTLRAHIRE 370
H+C CG F L H R+
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRK 79
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTF 403
+C CG +F TL H+ H P+PC +C ++F KS MK KHTF
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCG----KRFHQKSDMK-KHTF 50
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRSTQDI 106
Y C C + +MKKH IH G++P CQ C + F +S+ I
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHK-----------CQVCGKAFSQSSNLI 74
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 318 EKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKE 375
E+ Y C + C ++F S EL H ++ +C C F L HIR TH E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 376 TPFPCPFCEYKAKRKFELKSHMK 398
PF C C K R E K H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD S + HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 71 KFARSDER--KRHT-KIHL 86
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ RH+ RIH +C +C F L H+ R HTGEKPF C C
Sbjct: 22 LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 68
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 318 EKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKE 375
E+ Y C + C ++F S EL H ++ +C C F L HIR TH E
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 59
Query: 376 TPFPCPFCEYKAKRKFELKSHMK 398
PF C C K R E K H K
Sbjct: 60 KPFACDICGRKFARSDERKRHTK 82
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 46 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMN 235
+CD S + HIR+H G+KP+ C C ++ L H+R K +I
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 236 SYGTNIKKCMKRHVERIHL 254
+ + ++ KRH +IHL
Sbjct: 70 KFARSDER--KRHT-KIHL 85
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+ RH+ RIH +C +C F L H+ R HTGEKPF C C
Sbjct: 21 LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 67
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKH 218
+ C C + S H+ HIR H GEKP+ C C + + + K+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
KPF C C L++HI R HT EK + C +C ++F S E K H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHTG----EKPFACDICGRKFARSDERKRHRDIQH 55
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTF 403
+C C F L HIR TH E PF C C K R E K H +H
Sbjct: 5 QCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+C +C F L H+ R HTGEKPF C C
Sbjct: 5 QCRICMRNFSRSDHLTTHI-RTHTGEKPFACDIC 37
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 265 DLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKY----DLSSHIGRKHTDKEVLEKR 320
+LR F + + MR+HTGEKP C + CR Y +L +H+ R HT EK
Sbjct: 45 ELRPFKAQYMLVVHMRRHTGEKPHKCTF--EGCRKSYSRLENLKTHL-RSHTG----EKP 97
Query: 321 YVC--QLCPKQFLTSGELKYHQTTVHRKR---VHECSECGFTFFLEKTLRAHIRETH 372
Y+C + C K F + + HQ H V + C + +LR H++ H
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 187 MKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFV 230
+K H+R H GEKPYMC + C+ + SD KH + H + +V
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 190 HIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKR 247
H+R H GEKP+ C + C ++ +LK HLR K S + +
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 248 HVERIHLNITKTRCEL--CDLRFFDKVGLKMHVMRKH 282
H R H N C+L C R+ D L+ HV H
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 25 SSDLRDLLEHCRLCPAMTR-TDLLKHKYVCYACSYATYYNGNMKKHLRIHLGDRPFMCTL 83
S +LR L M R T HK C + N+K HLR H G++P+MC
Sbjct: 43 SRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH 102
Query: 84 LIC 86
C
Sbjct: 103 EGC 105
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 181 SFCSSHMKDHIRVHLGEKPYMC--IYCAYRCTQKSDLKKHLRKKH 223
S S K R H EKPY+C C R T S L+KH++ H
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 23/50 (46%)
Query: 171 RYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
RY C C SS + H R H GEKPY C C Q+S L H R
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIR 369
+RY C C K F S +L H+ T ++ ++C ECG F L H R
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 48 KHKYVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRSTQDIL 107
+ +Y C C + ++ ++ KH R H G++P+ C C + F++ + I
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK-----------CDECGKAFIQRSHLIG 64
Query: 108 QHGKVCNFAPRS 119
H P S
Sbjct: 65 HHRVHTGSGPSS 76
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 346 KRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFC 383
+R ++C ECG +F L H R TH E P+ C C
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDEC 52
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 285 EKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
+K F C +C Y+L H R HTD E+ Y C +C K F L+ H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIH-ERTHTD----ERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 345 RKRVHECSECGFTFFLEKTLRAH 367
+++ +C ECG F +TL H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVH 92
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETP 377
+K ++C+ C + F S L H+ T +R + C C F + LR H R H KE P
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKP 73
Query: 378 FPCPFC 383
F C C
Sbjct: 74 FKCQEC 79
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKR 320
C+ C F L +H R HT E+P+ C IC + H+ R H EK
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTHTDERPYTCD----ICHKAFRRQDHL-RDHRYIHSKEKP 73
Query: 321 YVCQLCPKQFLTSGELKYHQT 341
+ CQ C K F S L H+T
Sbjct: 74 FKCQECGKGFCQSRTLAVHKT 94
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
H R+H ++P+ C YC++ Q S+L KH++K H
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 271 KVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTD 313
K L++H R H ++PF C+YC + + +LS H+ + H D
Sbjct: 22 KAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 283 TGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
+G C C + CR K L+ H RKH + V R+ C+ C K+F + H++
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWH-QRKHAET-VAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 343 VH 344
H
Sbjct: 61 SH 62
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETP--FPCPFCEYKAKRKFELKSHMKRKH 401
+C CGFT + +L H R+ FPC FC + ++ + +H + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
+VC C H+K H R H EKPY C C T++ L +H +K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRSTQDIL 107
+VC C+ A ++K+H R H ++P+ C L CN+ F R +D+L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL-----------CNRAFTR--RDLL 46
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 351 CSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
C C F ++ L+ H R +H E P+PC C R+ L H ++ H+
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTD 313
CE+C F + LK H R HT EKP+ C C+ + L H + H+
Sbjct: 5 CEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C C ++ H VH GEKPY C C + + ++LK H R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLICQY 88
Y C C + Y GN+ H +H G++P+ C + Q+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETP 377
+K Y C C F G L H+T ++ + C+ CG F L+ H R H E P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 285 EKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
+KP+ C C R K +L+SH HT EK Y C +C QF LK H T +H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHK-TVHTG----EKPYRCNICGAQFNRPANLKTH-TRIH 68
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 252 IHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKP 287
+H RC +C +F LK H R H+GEKP
Sbjct: 39 VHTGEKPYRCNICGAQFNRPANLKTHT-RIHSGEKP 73
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHI 307
+C+ C F K L H HTGEKP+ C+ C +L +H
Sbjct: 19 KCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHT 65
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHI 368
R+H + EK+Y C+ C K F + H+ +R ++C CG +F + + +HI
Sbjct: 39 RRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHI 98
Query: 369 RETHRKE 375
+ H ++
Sbjct: 99 KSVHSQD 105
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKH 227
Y+C C C + ++ H +H EK Y C YC +K R KHE+ H
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYC-----EKVFPLAEYRTKHEIHH 73
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 176 TCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
+CD S + HIR+H G+KP+ C C ++ L H+R
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 262 ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
E CD RF L H+ R HTG+KPF C C L++HI R HT
Sbjct: 25 ESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT 73
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 321 YVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKE 375
++C +C + F + G + H +H +V C C TF+ L HI + H E
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 184 SSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHL 219
S ++K H R H GEKP+ C + C R SD KKH+
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPCPF--CEYKAKRKFELKSHMKRKHTFE 404
EC G +F + L HIR H E PFPCPF C R LK H KR HT E
Sbjct: 64 ECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGE 118
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 189 DHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLR 220
+HIRVH GEKP+ C + C + +LK H R
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 279 MRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSG 334
+R HTGEKPF C + C I +L H R HT EK + C+ C ++F S
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHK-RTHTG----EKPFKCEFEGCDRRFANSS 136
Query: 335 ELKYH 339
+ K H
Sbjct: 137 DRKKH 141
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 293 CDYICRTKYDLSSHIGRKHTDKEVLEKRYVC--QLCPKQFLTSGELKYHQTTVHRKRVHE 350
CD T ++L +H+ +H + +VC + CP++ + K V+ RVH
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPE-QNNHVCYWEECPREGKS---FKAKYKLVNHIRVHT 86
Query: 351 CSE--------CGFTFFLEKTLRAHIRETHRKETPFPCPF--CEYKAKRKFELKSHM 397
+ CG F + L+ H R TH E PF C F C+ + + K HM
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 251 RIHLNITKTRCEL--CDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKYDLSSH 306
R+H C C F LK+H R HTGEKPF C + CD D H
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Query: 307 I 307
+
Sbjct: 142 M 142
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDK 314
KPF C C+Y R+K +L +H+ R T+K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 377 PFPCPFCEYKAKRKFELKSHMKRKHT 402
PF C CEY + K LK+HM R T
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMNRHST 34
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 186 HMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVK 226
H+ H H GEK + C C R T K+++KKH + H +K
Sbjct: 50 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 279 MRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGEL 336
+ KHTGEKPF C + C + H+ R H+ EK + C C +F T +
Sbjct: 25 LSKHTGEKPFPCK--EEGCEKGFTSLHHLTR-HSLTHTGEKNFTCDSDGCDLRFTTKANM 81
Query: 337 KYHQTTVH 344
K H H
Sbjct: 82 KKHFNRFH 89
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 50 KYVCYACSYATYYNGNMK--KHLRIHLGDRPFMCTLLICQ 87
+Y+C YN N K HL H G++PF C C+
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCE 42
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHL 219
Y C C H+ H+++H G KPY C CA R + +H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 247 RHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
RH+ +HL + C +C +F K L H M+ HTG KP+ C+ C
Sbjct: 27 RHMS-MHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNIC 71
>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
Steroid Sulfotransferase
pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
Arabidopsis Thaliana Putative Steroid Sulphotransferase
Length = 326
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 276 MHVMRKHTGEKPFHCHYCDYICRTKYDL---SSHIGRKHTDKEVLEKRYVCQLCPKQ--F 330
M V H G+K DY + IG D +LE Y + P + F
Sbjct: 167 MFVSLWHFGKKLAPEETADYPIEKAVEAFCEGKFIGGPFWD-HILEYWYASRENPNKVLF 225
Query: 331 LTSGELKYHQTTVHRKRVHECSECGF 356
+T ELK QT V KR+ E ECGF
Sbjct: 226 VTYEELK-KQTEVEMKRIAEFLECGF 250
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKH 223
K Y C YC YR S+LK H++ KH
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKH 26
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 378 FPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ C +CEY++ LK+H+K KH+ E
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEK 286
+C+ C+ RF D LK H+ KH+ EK
Sbjct: 4 QCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKH 223
K Y C YC +R S+LK H++ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEK 286
+C+ C+ R D LK H+ KH+ EK
Sbjct: 4 QCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 346 KRVHECSECGFTFFLEKTLRAHIRETHRKETP 377
+R +ECSECG F + TL H R HR E P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQR-IHRGEKP 40
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEK 286
+C+ C+LR D LK H+ KH+ EK
Sbjct: 4 QCQYCELRSADSSNLKTHIKTKHSKEK 30
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKH 223
K Y C YC R S+LK H++ KH
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKH 26
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKP 199
Y C C SSH++ H RVH GEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKP 287
RC+ CD F + L H M HTGEKP
Sbjct: 14 RCDTCDKSFRQRSALNSHRM-IHTGEKP 40
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 283 TGEKPFHCHYCDYICRTKYDLSSH 306
T EKPF C CD R + L+SH
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH 31
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKP 199
Y+C C SH+ H R+H GEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDR 77
Y C CSYA+ N+ HLR H G++
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2YEW|B Chain B, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|E Chain E, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|H Chain H, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|K Chain K, Modeling Barmah Forest Virus Structural Proteins
Length = 427
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 102 STQDILQHGKVCNFAPRSDANFNFVCILCNYHIPCKWCKYCK 143
S QD+ + G + F S NFV +CN I C C+ K
Sbjct: 334 SVQDVQESGALSLFFATSSVEPNFVVQVCNARITCGKCEPPK 375
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 53 CYACSYATYYNGNMKKHLRIHLGDR 77
C C +GN+K+HLRIH G++
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDKE 315
+P+HC YC++ +TK +L+ H+ K K+
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKSKAHSKK 30
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 196 GEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C R +K + H+R
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVR 31
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRP 78
Y+C C A N+ KH +IH G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 345 RKRVHECSECGFTFFLEKTLRAHIRETHRKET 376
R++ +ECSECG F L H R TH E+
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQR-THSGES 39
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKH 223
K Y C YC R S+LK H++ KH
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKH 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,053,748
Number of Sequences: 62578
Number of extensions: 544901
Number of successful extensions: 2368
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 605
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)