RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10074
(420 letters)
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 37.3 bits (86), Expect = 0.014
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 175 FTCDYHSFCSSHMKDHIRVHLGEKPY----MCIYCAYRCTQKSDLKKHLRKKHEVKHC-- 228
F + F SS ++DH L E+ + +CI+C +L++H R +HE H
Sbjct: 192 FWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICD 251
Query: 229 FVNIVMNSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFF-DKVGLKMHVMRKH 282
V + Y + + ++ H H T C + F L H+ R H
Sbjct: 252 MVGPIRYQYFKSYED-LEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFH 305
Score = 31.9 bits (72), Expect = 0.68
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 205 CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHLNITKT----- 259
C RC +LKKH + +H C I N + + R H N
Sbjct: 159 CHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK 218
Query: 260 ---RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKY 301
C C + F+D L+ H +H CH CD + +Y
Sbjct: 219 GHPLCIFCKIYFYDDDELRRHCRLRHE-----ACHICDMVGPIRY 258
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 36.3 bits (84), Expect = 0.036
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 321 YVCQLCPKQFLTSGELKYHQTTVHR 345
YVC +C +F + +L HQ T H
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRTTHS 98
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 29.7 bits (67), Expect = 0.19
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 274 LKMHVMRKHTGEKPFHCHYCDYICRT 299
L+ H MR HTGEKP+ C C +
Sbjct: 2 LRRH-MRTHTGEKPYKCPVCGKSFSS 26
Score = 29.3 bits (66), Expect = 0.24
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 186 HMKDHIRVHLGEKPYMCIYCAYRCTQ 211
+++ H+R H GEKPY C C +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 25.8 bits (57), Expect = 4.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 364 LRAHIRETHRKETPFPCPFCEYKAKR 389
LR H+R TH E P+ CP C
Sbjct: 2 LRRHMR-THTGEKPYKCPVCGKSFSS 26
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional.
Length = 212
Score = 32.3 bits (74), Expect = 0.31
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 161 VNVIRPDVSYRYVCFTCDYH-----SFCSSHMKDHIRVHLGEK---PYMCIYCAYRCTQK 212
+N +R + V T D+H SF S+H K I + P C+ + T+
Sbjct: 42 INQVRQSHHFDLVVATQDWHPPNHISFASNHGKPKILPDGTTQGLWPPHCV----QGTKG 97
Query: 213 SDLKKHLRKK 222
+ L K L +
Sbjct: 98 AQLHKDLVVE 107
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 32.4 bits (73), Expect = 0.41
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 279 MRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLE--------------KRYV 322
M K KP+ C C+ + + L H+ H ++++ E K Y
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 323 CQLCPKQFLTSGELKYHQTTVH 344
C++C K++ LKYH+ H
Sbjct: 401 CEVCDKRYKNLNGLKYHRKHSH 422
Score = 31.6 bits (71), Expect = 0.77
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 318 EKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKE 375
K Y C + C K++ LKYH H+ + EK K+
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYH-----MLHGHQNQKLHENPSPEKM-----NIFSAKD 396
Query: 376 TPFPCPFCEYKAKRKFELKSHMKRKH 401
P+ C C+ + K LK H K H
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 31.2 bits (70), Expect = 1.1
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 195 LGEKPYMC--IYCAYRCTQKSDLKKHLRKKHEVKHCFVN---IVMNSYGTNIKKCMKRHV 249
KPY C C + ++ LK H+ H+ + N MN + K
Sbjct: 345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP------ 398
Query: 250 ERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHT 283
RCE+CD R+ + GLK H RKH+
Sbjct: 399 ---------YRCEVCDKRYKNLNGLKYH--RKHS 421
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 32.0 bits (73), Expect = 0.65
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 125 FVCILCNYHIPCKWCKYCKTKLDNNTEVLLQHCKLCVNVIRPDVSYRYVCFTCD 178
C C C C T + + C C + PD S R C CD
Sbjct: 668 RRCPSCGTETYENRCPDCGTHTE-----PVYVCPDCGAEVPPDESGRVECPRCD 716
>gnl|CDD|224508 COG1592, COG1592, Rubrerythrin [Energy production and conversion].
Length = 166
Score = 30.0 bits (68), Expect = 1.5
Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 15/49 (30%)
Query: 347 RVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKS 395
+V C CG+T H E P CP C K KFE
Sbjct: 133 KVWVCPVCGYT--------------HEGEAPEVCPICGAP-KEKFEKFE 166
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 27.8 bits (62), Expect = 2.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 378 FPCPFCEYKAKRKFELKSHMKRKHT 402
F CP C + F LK H +R HT
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHT 26
>gnl|CDD|213962 TIGR04349, rSAM_QueE_gams, putative 7-cyano-7-deazaguanosine
(preQ0) biosynthesis protein QueE, gammaproteobacterial
type. Members of this radical SAM domain protein family
appear to be a form of the queuosine biosynthesis
protein QueE. QueE is involved in making preQ0
(7-cyano-7-deazaquanine), a precursor of both the
bacterial/eukaryotic modified tRNA base queuosine and
the archaeal modified base archaeosine. Members occur in
preQ0 operons species that lack members of related
protein family TIGR03365.
Length = 210
Score = 29.1 bits (66), Expect = 3.2
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 19/55 (34%)
Query: 287 PFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEK------RYVCQLCPKQFLTSGE 335
P C YCD T Y + G + + ++L + RYV +T GE
Sbjct: 30 PLRCVYCD----TAY--AFSGGERMSLDDILAQVASYGARYVT-------VTGGE 71
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 27.6 bits (62), Expect = 3.7
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 194 HLGEK---PYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVN 231
+L EK C+YC + L++H+R K HC +
Sbjct: 42 YLREKIHEGNECLYCGKQFKSLEALRQHMRDK---GHCKIP 79
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 29.2 bits (66), Expect = 5.3
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 345 RKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+K V EC +CG +E + R E P C C K +L + RK F
Sbjct: 126 KKAVFECPKCGREVEVE-------QSEFRVEPPRECENCGKFGKGPLKL---VPRKSEFI 175
Query: 405 DS 406
D
Sbjct: 176 DF 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.140 0.477
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,974,056
Number of extensions: 1802090
Number of successful extensions: 2333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2318
Number of HSP's successfully gapped: 85
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.9 bits)