RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10074
(420 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 77.1 bits (191), Expect = 9e-17
Identities = 70/236 (29%), Positives = 87/236 (36%), Gaps = 62/236 (26%)
Query: 181 SFC-SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGT 239
S SS + GEKPY C C ++ L +H
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH--------------------- 40
Query: 240 NIKKCMKRHVERIHLNITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCD 294
+R H T +C C F DK L H R HTGEKP+ C C
Sbjct: 41 ----------QRTH-----TGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECG 84
Query: 295 YICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH----- 349
+ +L +H R HT EK Y C C K F L+ HQ R H
Sbjct: 85 KSFSQRANLRAH-QRTHTG----EKPYACPECGKSFSQLAHLRAHQ------RTHTGEKP 133
Query: 350 -ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+C ECG +F E L H R TH E P+ CP C R+ L H +R HT +
Sbjct: 134 YKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVH-QRTHTGK 187
Score = 73.2 bits (181), Expect = 2e-15
Identities = 63/217 (29%), Positives = 76/217 (35%), Gaps = 60/217 (27%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVN 231
Y C C S H+ +H R H GEKPY C C + K DL +H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH------------- 68
Query: 232 IVMNSYGTNIKKCMKRHVERIHLNITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEK 286
+R H T +C C F + L+ H R HTGEK
Sbjct: 69 ------------------QRTH-----TGEKPYKCPECGKSFSQRANLRAH-QRTHTGEK 104
Query: 287 PFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRK 346
P+ C C L +H R HT EK Y C C K F L HQ
Sbjct: 105 PYACPECGKSFSQLAHLRAH-QRTHTG----EKPYKCPECGKSFSREDNLHTHQ------ 153
Query: 347 RVH------ECSECGFTFFLEKTLRAHIRETHRKETP 377
R H +C ECG +F L H R TH +
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVHQR-THTGKKT 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 69.5 bits (171), Expect = 1e-14
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQ- 340
+G C C +KY L H RKHT EK + C C K + L H+
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHTG----EKPFECPKCGKCYFRKENLLEHEA 56
Query: 341 -TTVHR-KRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMK 398
++R ++V CS C TF LR H+ +H E P+ C C + +K +L+SHM
Sbjct: 57 RNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 399 RKHTFEDS 406
+ H+ S
Sbjct: 116 KLHSGPSS 123
Score = 61.8 bits (151), Expect = 4e-12
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSH--IGRKHTDKEVLE 318
C C +F K LK+H RKHTGEKPF C C K +L H + E
Sbjct: 10 CPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS----E 64
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETH 372
+ + C +C + F EL+ H H +CS C F +K L++H+ + H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHM------VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 57.9 bits (141), Expect = 1e-10
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 29/141 (20%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVN 231
C TC ++K H R H GEKP+ C C +K +L +H +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR---------- 57
Query: 232 IVMNSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
++ + C +C F ++ L++H M HTGE P+ C
Sbjct: 58 ------------------NCMNRSEQVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCS 98
Query: 292 YCDYICRTKYDLSSHIGRKHT 312
C K DL SH+ + H+
Sbjct: 99 SCSQQFMQKKDLQSHMIKLHS 119
Score = 54.0 bits (131), Expect = 2e-09
Identities = 34/159 (21%), Positives = 47/159 (29%), Gaps = 50/159 (31%)
Query: 194 HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIH 253
G C C + K LK H R H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-------------------------------NRKH 30
Query: 254 LNITKT-----RCELCDLRFFDKVGLKMHVMRK---HTGEKPFHCHYCDYICRTKYDLSS 305
T C C +F K L H + + E+ F C C R + +L
Sbjct: 31 -----TGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRMELRL 84
Query: 306 HIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
H+ HT E Y C C +QF+ +L+ H +H
Sbjct: 85 HM-VSHTG----EMPYKCSSCSQQFMQKKDLQSHMIKLH 118
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 66.3 bits (162), Expect = 4e-14
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQT 341
+G C C + CR K L+ H RKH + V R+ C+ C K+F + H++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAE-TVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 342 TVHRKRVHECSEC 354
H + E
Sbjct: 60 KSHPALLLAPQES 72
Score = 48.6 bits (116), Expect = 7e-08
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHT---GEKPFHCHYCDYICRTKYDLSSHIGRKHTDK 314
+CE+C K L H RKH F C +C +++H + H
Sbjct: 9 QCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Score = 48.2 bits (115), Expect = 9e-08
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVH---LGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
C C + + + H R H + + C +C R + + H K H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 44.7 bits (106), Expect = 2e-06
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 349 HECSECGFTFFLEKTLRAHIRETH---RKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
+C CGFT + +L H R H FPC FC + ++ + +H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Score = 43.5 bits (103), Expect = 4e-06
Identities = 17/101 (16%), Positives = 20/101 (19%), Gaps = 35/101 (34%)
Query: 194 HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIH 253
G C C + C QK+ L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-------------------------------RKH 30
Query: 254 LNITKTR---CELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
CE C RF + H K
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAH-RSKSHPALLLAPQ 70
Score = 30.1 bits (68), Expect = 0.25
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 51 YVCYACSYATYYNGNMKKHLRIH---LGDRPFMCTL 83
C C + ++ H R H + F C
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF 43
Score = 28.5 bits (64), Expect = 0.80
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 375 ETPFPCPFCEYKAKRKFELKSHMKRKHTFED 405
+ C C + ++K L H RKH
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ-RKHAETV 34
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 60.6 bits (148), Expect = 4e-12
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 29/103 (28%)
Query: 186 HMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCM 245
R H GEKPY C C R TQ +K H+ +KH N+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH--------------TENVA--- 44
Query: 246 KRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
K C CD K L +H+ ++H+ P
Sbjct: 45 ------------KFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 59.1 bits (144), Expect = 1e-11
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 274 LKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTS 333
R H+GEKP+ C+ C + HI + + ++ C C
Sbjct: 3 SGSS-GRTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTEN--VAKFHCPHCDTVIARK 58
Query: 334 GELKYHQTTVH 344
+L H H
Sbjct: 59 SDLGVHLRKQH 69
Score = 51.4 bits (124), Expect = 8e-09
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGE--KPYMCIYCAYRCTQKSDLKKHLRKKH 223
Y C+ C S MK HI E + C +C +KSDL HLRK+H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 48.3 bits (116), Expect = 8e-08
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGE--KPFHCHYCDYICRTKYDLSSHIGRKHT 312
C +C RF +KMH + + E FHC +CD + K DL H+ ++H+
Sbjct: 17 ECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 44.0 bits (105), Expect = 2e-06
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 334 GELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETHRKET--PFPCPFCEY 385
G R H EC C F T++ HI E F CP C+
Sbjct: 1 GSSGSSG------RTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDT 53
Query: 386 KAKRKFELKSHMKRKHTFE 404
RK +L H++++H++
Sbjct: 54 VIARKSDLGVHLRKQHSYS 72
Score = 28.6 bits (65), Expect = 0.79
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 64 GNMKKHLRIHLGDRPFMCT 82
G+ R H G++P+ C
Sbjct: 1 GSSGSSGRTHSGEKPYECY 19
Score = 25.9 bits (58), Expect = 7.3
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLG--DRPFMCT 82
Y CY C +G MK H+ F C
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 62.2 bits (152), Expect = 7e-12
Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 28/165 (16%)
Query: 197 EKPYMCIYCAYRCTQKSDLKKHLRKKH--------EVKHCFVNIVMNSYGTNIKKCMKRH 248
E C+ + L H+ +H + + + + H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM--LVVH 58
Query: 249 VERIHLNIT-----KTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKY 301
+ R H T K E C + LK H +R HTGEKP+ C + C
Sbjct: 59 M-RRH---TGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 302 DLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKYHQTTVH 344
D + H R H++ EK YVC+L C K++ L+ H TVH
Sbjct: 114 DRAKHQNRTHSN----EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 61.5 bits (150), Expect = 1e-11
Identities = 38/162 (23%), Positives = 51/162 (31%), Gaps = 31/162 (19%)
Query: 260 RCELCDLRFFDKVGLKMHVM--RKHTGEKPFHCHYCDYICRTK-----YDLSSHIGRKHT 312
R + C F + L H+ H K F CH+ + Y L H+ R+HT
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHT 63
Query: 313 DKEVLEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVH------ECSE--CGFTFFLEK 362
EK + C C K + LK H R H C C F
Sbjct: 64 G----EKPHKCTFEGCRKSYSRLENLKTHL------RSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 363 TLRAHIRETHRKETPFPCPFCE-YKA-KRKFELKSHMKRKHT 402
H TH E P+ C K L+ H+ +
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTVH 154
Score = 53.8 bits (130), Expect = 5e-09
Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 24/135 (17%)
Query: 285 EKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLC-----PKQFLTSGELKYH 339
E C ++ L HI +H E K +VC + F L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGE--RKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 340 QTTVHRKRVH------EC--SECGFTFFLEKTLRAHIRETHRKETPFPCPF--CEYKAKR 389
R H +C C ++ + L+ H+R +H E P+ C C
Sbjct: 59 M------RRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSN 111
Query: 390 KFELKSHMKRKHTFE 404
+ H R H+ E
Sbjct: 112 ASDRAKHQNRTHSNE 126
Score = 51.1 bits (123), Expect = 5e-08
Identities = 35/154 (22%), Positives = 48/154 (31%), Gaps = 53/154 (34%)
Query: 172 YVCFTCDYHSF-----CSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHE 224
+VC + H+R H GEKP+ C + C ++ +LK HL
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL----- 89
Query: 225 VKHCFVNIVMNSYGTNIKKCMKRHVERIHLNITKT-----RCE--LCDLRFFDKVGLKMH 277
R H T CE C F + H
Sbjct: 90 --------------------------RSH-----TGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 278 VMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKH 311
R H+ EKP+ C C +Y S + RKH
Sbjct: 119 QNRTHSNEKPYVCKLPG--CTKRYTDPSSL-RKH 149
Score = 29.1 bits (66), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 64 GNMKKHLRIHLGDRPFMCTLLIC 86
N+K HLR H G++P+MC C
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGC 105
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 61.1 bits (149), Expect = 1e-11
Identities = 37/174 (21%), Positives = 55/174 (31%), Gaps = 41/174 (23%)
Query: 183 CSSHMKDHI---RVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGT 239
+K + + + C + +L H+ +H
Sbjct: 6 SGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP------------ 53
Query: 240 NIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYIC 297
E+ + C F K L H +R HTGEKPF C + C I
Sbjct: 54 ----------EQNNHVCYWEECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIF 102
Query: 298 RTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVH 349
+L H R HT EK + C+ C ++F S + K H VH
Sbjct: 103 ARSENLKIHK-RTHTG----EKPFKCEFEGCDRRFANSSDRKKHM------HVH 145
Score = 51.5 bits (124), Expect = 4e-08
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTT---------VHRKRVHECSECGFTFFLEKTLRAHI 368
+ + C + F T EL H T H EC G +F + L HI
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 369 RETHRKETPFPCPFCE-YKA-KRKFELKSHMKRKHT 402
R H E PFPCPF K R LK H R HT
Sbjct: 83 R-VHTGEKPFPCPFPGCGKIFARSENLKIHK-RTHT 116
Score = 32.6 bits (75), Expect = 0.087
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 11/88 (12%)
Query: 326 CPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEY 385
+ + + C TF L H+ P Y
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCY 61
Query: 386 KA---------KRKFELKSHMKRKHTFE 404
K K++L +H+ R HT E
Sbjct: 62 WEECPREGKSFKAKYKLVNHI-RVHTGE 88
Score = 29.9 bits (68), Expect = 0.90
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 64 GNMKKHLRIHLGDRPFMCTLLIC 86
N+K H R H G++PF C C
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGC 128
Score = 28.0 bits (63), Expect = 3.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 65 NMKKHLRIHLGDRPFMCT 82
+ KKH+ +H D+ +
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 57.1 bits (139), Expect = 5e-11
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRK 221
C C Y + ++ H R+H ++P+ C YC++ Q S+L KH++K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 52.1 bits (126), Expect = 3e-09
Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 32/99 (32%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVER 251
P C C+Y C+ K+ L+ H ER
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-------------------------------ER 30
Query: 252 IHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
IH +C C L H M+K G+
Sbjct: 31 IHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFHGDMSGPS 68
Score = 52.1 bits (126), Expect = 4e-09
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYH 339
+ P C C Y C +K L H R H ++ + C C L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE-RIHCT----DRPFKCNYCSFDTKQPSNLSKH 56
Query: 340 QTT 342
Sbjct: 57 MKK 59
Score = 50.6 bits (122), Expect = 1e-08
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
C C K L++H R H ++PF C+YC + + +LS H+ +K
Sbjct: 12 CSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFH 61
Score = 42.1 bits (100), Expect = 1e-05
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+CSEC ++ + LR H R H + PF C +C + K+ L HM +K +
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGD 63
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
C CSY+ ++ H RIH DRPF C
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKC 40
Score = 30.2 bits (69), Expect = 0.20
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C + + S++ H++ G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 29.4 bits (67), Expect = 0.39
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 371 THRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ P C C Y K L+ H R H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHE-RIHCTD 35
Score = 28.6 bits (65), Expect = 0.65
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C CS+ T N+ KH++ GD +
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 57.5 bits (140), Expect = 6e-11
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 274 LKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTS 333
R HTGEKP+ C +CD R K L H +++ D + +VC C K F
Sbjct: 3 SGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 334 GELKYHQTTVHRKRVH------ECSECGFTF 358
+ H E G +
Sbjct: 61 NTMARHA------DNCAGPDGVEGENSGPSS 85
Score = 44.4 bits (106), Expect = 2e-06
Identities = 19/108 (17%), Positives = 26/108 (24%), Gaps = 28/108 (25%)
Query: 186 HMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCM 245
R H GEKPY C +C QK L H + ++ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RY---------------HDPNFVP 45
Query: 246 KRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
V C C F + + H G
Sbjct: 46 AAFV-----------CSKCGKTFTRRNTMARH-ADNCAGPDGVEGENS 81
Score = 34.8 bits (81), Expect = 0.006
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGE----KPYMCIYCAYRCTQKSDLKKHLR-----KK 222
Y C CD + H + + ++C C T+++ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 223 HEVKHC 228
E ++
Sbjct: 76 VEGENS 81
Score = 27.1 bits (61), Expect = 2.9
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+VC C M +H G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGE 79
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 57.1 bits (139), Expect = 2e-10
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 53/158 (33%)
Query: 196 GEKPYMC--IYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIH 253
++P+MC C R + S L+ H R H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMH-------------------------------SRKH 31
Query: 254 LNITKT-----RCEL--CDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSH 306
T +C+ C+ RF LK H R+HTG KPF C C L +H
Sbjct: 32 -----TGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Query: 307 IGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKYHQTT 342
R HT EK + C+ C K+F S EL H
Sbjct: 86 T-RTHTG----EKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 53.3 bits (129), Expect = 4e-09
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 283 TGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKY 338
+ ++PF C Y C+ L H RKHT EK Y C C ++F S +LK
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS-RKHTG----EKPYQCDFKDCERRFSRSDQLKR 56
Query: 339 HQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCE-YKA-KRK 390
HQ R H +C C F L+ H R TH E PF C + K R
Sbjct: 57 HQ------RRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARS 109
Query: 391 FELKSHMK 398
EL H
Sbjct: 110 DELVRHHN 117
Score = 44.4 bits (106), Expect = 4e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S +K H R H G KP+ C C + ++ LK H R
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 42.1 bits (100), Expect = 3e-05
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLR 220
+ C TC S H+K H R H GEKP+ C + C + + +L +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 31.7 bits (73), Expect = 0.14
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLIC 86
+ C C + ++K H R H G++PF C C
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSC 102
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 51 YVC--YACSYATYYNGNMKKHLRIHLGDRPFMCTLLIC 86
++C C+ + +++ H R H G++P+ C C
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDC 44
Score = 26.3 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 51 YVCYA--CSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + +K+H R H G +PF C
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK 70
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 56.3 bits (137), Expect = 2e-10
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQT 341
P C C K L +H+ R HT K Y C+ C S L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTG----VKPYKCKTCDYAAADSSSLNKHL- 56
Query: 342 TVHRKRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
R+H +C C + L H+R +H ++
Sbjct: 57 -----RIHSDERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 52.4 bits (127), Expect = 5e-09
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKR 320
CE+C F K LK H MR HTG KP+ C CDY L+ H+ R H+D E+
Sbjct: 11 CEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSD----ERP 64
Query: 321 YVCQLCPKQFLTSGELKYHQ 340
+ CQ+CP S +L H
Sbjct: 65 FKCQICPYASRNSSQLTVHL 84
Score = 51.3 bits (124), Expect = 1e-08
Identities = 28/124 (22%), Positives = 39/124 (31%), Gaps = 42/124 (33%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVN 231
+ C C +K H+R H G KPY C C Y S L KH
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH------------- 55
Query: 232 IVMNSYGTNIKKCMKRHVERIHLNITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEK 286
RIH + +C++C + L +H +R HTG+
Sbjct: 56 ------------------LRIH-----SDERPFKCQICPYASRNSSQLTVH-LRSHTGDS 91
Query: 287 PFHC 290
Sbjct: 92 GPSS 95
Score = 47.0 bits (113), Expect = 4e-07
Identities = 30/135 (22%), Positives = 41/135 (30%), Gaps = 47/135 (34%)
Query: 194 HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIH 253
P+ C C ++K LK H R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-------------------------------MRCH 31
Query: 254 LNITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIG 308
T +C+ CD D L H +R H+ E+PF C C Y R L+ H+
Sbjct: 32 -----TGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVHL- 84
Query: 309 RKHTDKEVLEKRYVC 323
R HT +
Sbjct: 85 RSHTG----DSGPSS 95
Score = 33.9 bits (79), Expect = 0.013
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
H+C CG F + L+ H+R H P+ C C+Y A L H R H+ E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDE 62
Score = 29.3 bits (67), Expect = 0.52
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y C C YA + ++ KHLRIH +RPF C
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Score = 27.8 bits (63), Expect = 2.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
+ C C YA+ + + HLR H GD
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 55.9 bits (136), Expect = 3e-10
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 279 MRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKY 338
+K F C +C Y+L H R HTD E+ Y C +C K F L+
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTD----ERPYTCDICHKAFRRQDHLRD 63
Query: 339 HQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
H+ +H +C ECG F +TL H H + +
Sbjct: 64 HR------YIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
Score = 45.1 bits (108), Expect = 2e-06
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 30/120 (25%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR-----KKHEVKHC---FVNIVMN 235
SS +K ++C +C T+ +L H R + + C F
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF------ 55
Query: 236 SYGTNIKKCMKRHVERIHLNITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
+ ++ H IH + +C+ C F L +H H
Sbjct: 56 ----RRQDHLRDH-RYIH-----SKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTA 104
Score = 37.4 bits (88), Expect = 0.001
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
H++DH +H EKP+ C C Q L H
Sbjct: 57 RQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 29.3 bits (67), Expect = 0.64
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 183 CSSHMKDHIRVHLGEKPYMC 202
S + H +H+
Sbjct: 85 QSRTLAVHKTLHMQTSSPTA 104
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 57.6 bits (140), Expect = 5e-10
Identities = 38/164 (23%), Positives = 55/164 (33%), Gaps = 36/164 (21%)
Query: 183 CSSHMKDHIRVHLGEKPYMC--IYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTN 240
H+ H H GEK + C C R T K+++KKH + H +K C Y +
Sbjct: 56 SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC-------VYVCH 108
Query: 241 IKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCH--YCDYICR 298
+ C K F LK+H HT + P+ C CD
Sbjct: 109 FENCGK--------------------AFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFS 147
Query: 299 TKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
L H + H +K C K + + LK+
Sbjct: 148 LPSRLKRH-EKVHA-GYPCKKDDSCSFVGKTW--TLYLKHVAEC 187
Score = 57.2 bits (139), Expect = 7e-10
Identities = 53/231 (22%), Positives = 70/231 (30%), Gaps = 62/231 (26%)
Query: 190 HIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIK--KCM 245
+ + K Y+C + C + L+ HL KH T K C
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KH---------------TGEKPFPCK 46
Query: 246 KRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHC--HYCDYICRTKYDL 303
+ E C+ F L H HTGEK F C CD TK ++
Sbjct: 47 E---------------EGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANM 90
Query: 304 SSHIGRKHTDKEVLEKR--YVCQL--CPKQFLTSGELKYHQTTVHRKRVH------ECSE 353
H + + K YVC C K F +LK HQ H EC
Sbjct: 91 KKHF-NRFHN----IKICVYVCHFENCGKAFKKHNQLKVHQ------FSHTQQLPYECPH 139
Query: 354 --CGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
C F L L+ H + H C + K H+ H
Sbjct: 140 EGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 54.8 bits (133), Expect = 7e-10
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQT 341
+G C C I R Y L+ H H+ EK Y C +C +F + YH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHK-LSHSG----EKPYSCPVCGLRFKRKDRMSYHV- 55
Query: 342 TVHRKRVH--------ECSECGFTFFLEKTLRAHIRETH 372
R H C CG F L HI++ H
Sbjct: 56 -----RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 44.0 bits (105), Expect = 4e-06
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEK 319
CE+C F D L H H+GEKP+ C C + K +S H+ R H K
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSV--GK 64
Query: 320 RYVCQLCPKQFLTSGELKYHQTTVHRKRVH 349
Y+CQ C K F L H K+VH
Sbjct: 65 PYICQSCGKGFSRPDHL-----NGHIKQVH 89
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
H+ H H GEKPY C C R +K + H+R
Sbjct: 19 DVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 36.7 bits (86), Expect = 0.002
Identities = 24/121 (19%), Positives = 33/121 (27%), Gaps = 34/121 (28%)
Query: 194 HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIH 253
G C C L +H + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-------------------------------KLSH 30
Query: 254 LNITKTRCELCDLRFFDKVGLKMHVMRKHTGE--KPFHCHYCDYICRTKYDLSSHIGRKH 311
C +C LRF K + H +R H G KP+ C C L+ HI + H
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Query: 312 T 312
+
Sbjct: 90 S 90
Score = 26.7 bits (60), Expect = 4.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
C C ++ +H H G++P+ C
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCP 39
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 55.2 bits (132), Expect = 8e-10
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
Query: 274 LKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTS 333
K++ TG F C C T +L+ H+ ++ +
Sbjct: 7 GKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 334 GELKYHQTTVHRKRVHECSECGFTFFLEKTLRAH-IRETHRKETPFP 379
L + ++V +C CG +F + L H I+ H ++ P
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 50.1 bits (119), Expect = 5e-08
Identities = 21/136 (15%), Positives = 33/136 (24%), Gaps = 27/136 (19%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKK 243
S K + + G + C C+ +L H
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH------------------------- 38
Query: 244 CMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDL 303
M N K L K +K C YC + + DL
Sbjct: 39 -MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDL 96
Query: 304 SSHIGRKHTDKEVLEK 319
S H+ + ++V
Sbjct: 97 SVHMIKTKHYQKVSGP 112
Score = 35.1 bits (80), Expect = 0.009
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 136 CKWCKYCKTKLDNNTEVLLQHCKLCVNVIRPDVSYRYVCFTCDYHSFCSSHMKDHIRVHL 195
CK C L L H + R D + + +
Sbjct: 22 CKDCSAAYDTLVE----LTVHMNETGHY-RDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 196 GEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
+K C+YC + DL H+ K
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 28.6 bits (63), Expect = 1.5
Identities = 10/75 (13%), Positives = 19/75 (25%)
Query: 332 TSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKF 391
+ K + + C +C + L H+ ET +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 392 ELKSHMKRKHTFEDS 406
K + ED+
Sbjct: 63 PRKRSLLEMEGKEDA 77
Score = 26.7 bits (58), Expect = 7.8
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 369 RETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFEDSLTTEETE 413
+ F C C EL HM + D +
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN 55
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 54.2 bits (131), Expect = 1e-09
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 264 CDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRY 321
C + LK H +R HTGEKP+ C + CD+ +L+ H RKHT K +
Sbjct: 23 CTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTG----AKPF 76
Query: 322 VCQLCPKQFLTSGELKYHQTT 342
C +C + F S L H
Sbjct: 77 QCGVCNRSFSRSDHLALHMKR 97
Score = 43.0 bits (102), Expect = 9e-06
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 184 SSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
SSH+K H+R H GEKPY C + C +R + +L +H RK
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 42.2 bits (100), Expect = 2e-05
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 318 EKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHR 373
+ + C C K + S LK H T ++ ++C+ C + F L H R H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHT 71
Query: 374 KETPFPCPFCEYKAKRKFELKSHMKRKHT 402
PF C C R L HMKR H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKR-HQ 99
Score = 39.9 bits (94), Expect = 1e-04
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S + H R H G KP+ C C ++ L H++
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 38.0 bits (89), Expect = 5e-04
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 345 RKRVHECS--ECGFTFFLEKTLRAHIRETHRKETPFPC--PFCEYKAKRKFELKSHMKRK 400
++R+H C C + L+AH+R TH E P+ C C+++ R EL H RK
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHY-RK 69
Query: 401 HT 402
HT
Sbjct: 70 HT 71
Score = 38.0 bits (89), Expect = 7e-04
Identities = 37/132 (28%), Positives = 47/132 (35%), Gaps = 39/132 (29%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIK- 242
S + R+H + P C T+ S LK HLR H T K
Sbjct: 6 SGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT-----H-----------TGEKP 45
Query: 243 -KCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKY 301
KC E CD RF L H RKHTG KPF C C+
Sbjct: 46 YKC---------------TWEGCDWRFARSDELTRH-YRKHTGAKPFQCGVCNRSFSRSD 89
Query: 302 DLSSHIGRKHTD 313
L+ H+ ++H +
Sbjct: 90 HLALHM-KRHQN 100
Score = 30.3 bits (69), Expect = 0.26
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 63 NGNMKKHLRIHLGDRPFMCTLLIC 86
+ ++K HLR H G++P+ CT C
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGC 53
Score = 27.2 bits (61), Expect = 3.5
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 11/39 (28%)
Query: 64 GNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRS 102
+ +H R H G +PF C + CN+ F RS
Sbjct: 61 DELTRHYRKHTGAKPFQCGV-----------CNRSFSRS 88
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 52.9 bits (128), Expect = 3e-09
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEK 319
+C +C F L H +R HTGEKPF C C + H
Sbjct: 5 QCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHR-DIQH-----IL 57
Query: 320 RYVCQLCPKQFLTSGELKYHQTTVHRKRVH 349
+ + + L+ R +
Sbjct: 58 PILEDKVEELLSKNYHLENEVA---RLKKL 84
Score = 49.0 bits (118), Expect = 6e-08
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVN 231
+ C C + S H+ HIR H GEKP+ C C + + + K+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH------------- 50
Query: 232 IVMNSYGTNIKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHV--MRKHTGEK 286
+ + L+ V ++K GE+
Sbjct: 51 -------------RDIQHILPI------LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 45.6 bits (109), Expect = 1e-06
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHR 345
KPF C C L++HI R HT EK + C +C ++F S E K H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHTG----EKPFACDICGRKFARSDERKRHRDI-QH 55
Query: 346 KRVHECSECGFTFFLEKTLRAHIRE--TH 372
+ L +
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 42.5 bits (101), Expect = 1e-05
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETH 372
K + C++C + F S L H R H C CG F + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI------RTHTGEKPFACDICGRKFARSDERKRHRD-IQ 54
Query: 373 RKETPFPCPFCEYKAKRKFELKSHMK--RKHTFE 404
P E + + L++ + +K E
Sbjct: 55 H-ILPILEDKVEELLSKNYHLENEVARLKKLVGE 87
Score = 35.2 bits (82), Expect = 0.005
Identities = 18/122 (14%), Positives = 29/122 (23%), Gaps = 45/122 (36%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHLNIT 257
KP+ C C ++ L H R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-------------------------------IRTH---- 26
Query: 258 KT-----RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIG--RK 310
T C++C +F K H P + + Y L + + +K
Sbjct: 27 -TGEKPFACDICGRKFARSDERKRH-RDIQH-ILPILEDKVEELLSKNYHLENEVARLKK 83
Query: 311 HT 312
Sbjct: 84 LV 85
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + ++ H+R H G++PF C
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 35
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 51.3 bits (124), Expect = 1e-08
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 264 CDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
CD RF L H +R HTG+KPF C C L++HI R HT EK + C
Sbjct: 12 CDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----EKPFAC 65
Query: 324 QLCPKQFLTSGELKYHQTT 342
+C ++F S E K H
Sbjct: 66 DICGRKFARSDERKRHTKI 84
Score = 49.0 bits (118), Expect = 6e-08
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 317 LEKRYVCQL--CPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHI 368
+E+ Y C + C ++F SG L H R+H +C C F L HI
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHI------RIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 369 RETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
R TH E PF C C K R E K H + H +
Sbjct: 55 R-THTGEKPFACDICGRKFARSDERKRHT-KIHLRQ 88
Score = 46.7 bits (112), Expect = 4e-07
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 42/109 (38%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIK 242
S + HIR+H G+KP+ C C ++ L H
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH------------------------ 53
Query: 243 KCMKRHVERIHLNITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEK 286
R H T C++C +F K H + H +K
Sbjct: 54 -------IRTH-----TGEKPFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 172 YVCFTCDYHSF-CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
+ C C +F S H+ HIR H GEKP+ C C + + + K+H +
Sbjct: 35 FQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 39.4 bits (93), Expect = 1e-04
Identities = 30/123 (24%), Positives = 39/123 (31%), Gaps = 45/123 (36%)
Query: 197 EKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHL 254
E+PY C C R +Q L +H+R IH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-------------------------------IH- 29
Query: 255 NITKT-----RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGR 309
T +C +C F L H +R HTGEKPF C C + H +
Sbjct: 30 ----TGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHT-K 83
Query: 310 KHT 312
H
Sbjct: 84 IHL 86
Score = 28.2 bits (64), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + ++ H+R H G++PF C
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Score = 26.7 bits (60), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 YVCYA--CSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C +G++ +H+RIH G +PF C
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR 38
Score = 26.3 bits (59), Expect = 5.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEK 198
+ C C S K H ++HL +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 51.0 bits (123), Expect = 1e-08
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLE 318
C + LK H +R HTGEKP+HC + C + +L+ H RKHT
Sbjct: 10 YAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTG----H 63
Query: 319 KRYVCQLCPKQFLTSGELKYHQTT 342
+ + CQ C + F S L H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 44.1 bits (105), Expect = 4e-06
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 281 KHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQL--CPKQFLTSGELKY 338
K T C L +H+ R HT EK Y C C +F S EL
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL-RTHTG----EKPYHCDWDGCGWKFARSDELTR 55
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETH 372
H R +C +C F L H++ H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMK-RH 88
Score = 41.7 bits (99), Expect = 2e-05
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 170 YRYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC--IYCAYRCTQKSDLKKHLRK 221
+ C SSH+K H+R H GEKPY C C ++ + +L +H RK
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 41.4 bits (98), Expect = 3e-05
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHRKE 375
C K + S LK H T ++ + C CG+ F L H R H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGH 63
Query: 376 TPFPCPFCEYKAKRKFELKSHMKR 399
PF C C+ R L HMKR
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S + H R H G +P+ C C ++ L H++
Sbjct: 49 RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 31.3 bits (72), Expect = 0.11
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 48 KHKYVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLIC 86
H C + ++K HLR H G++P+ C C
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGC 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 46.6 bits (110), Expect = 2e-07
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 171 RYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRK 221
+Y+C C S +K HIR H +PY C YC + K +L KH++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.8 bits (82), Expect = 0.001
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ C ECG L+ HIR TH P+ C +C + K K L HM +
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAHS 55
Score = 34.7 bits (79), Expect = 0.004
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDK 314
CE C +R LK H +R HT +P+HC YC++ +TK +L+ H+ K K
Sbjct: 3 ICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 34.3 bits (78), Expect = 0.006
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 320 RYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKE 375
+Y+C+ C + LK H T R + C+ C F+F + L H++ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHS 55
Score = 32.4 bits (73), Expect = 0.021
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 50 KYVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
KY+C C +KKH+R H RP+ CT
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCT 33
Score = 29.7 bits (66), Expect = 0.25
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 32/87 (36%)
Query: 200 YMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHLNITKT 259
Y+C C R + S LKKH+R H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-------------------------------THTDVRPY 30
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEK 286
C C+ F K L H M+ K
Sbjct: 31 HCTYCNFSFKTKGNLTKH-MKSKAHSK 56
Score = 25.8 bits (56), Expect = 5.1
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEK 198
Y C C++ ++ H++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 25.4 bits (55), Expect = 6.2
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 288 FHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
+ C C + L HI R HTD + Y C C F T G L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHI-RTHTD----VRPYHCTYCNFSFKTKGNLTKHMKS 51
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 48.3 bits (116), Expect = 3e-07
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 26/132 (19%)
Query: 285 EKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
+ C + C + R + H+ H + +VC C K F+ S +LK HQ
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHL-HTHG-----PRVHVCAECGKAFVESSKLKRHQ-- 54
Query: 343 VHRKRVH------ECS--ECGFTFFLEKTLRAHIRETHRKETPFPCPF--CEYKAKRKFE 392
VH +C+ CG F L+ LR H+R H + P+ CPF C K +
Sbjct: 55 ----LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 393 LKSHMKRKHTFE 404
LKSH+ H
Sbjct: 110 LKSHI-LTHAKA 120
Score = 45.6 bits (109), Expect = 2e-06
Identities = 40/154 (25%), Positives = 54/154 (35%), Gaps = 48/154 (31%)
Query: 197 EKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHL 254
+ C + C S ++KHL H R+H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT--------------------------HGPRVH- 35
Query: 255 NITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYIC----RTKYDLSSHIGRK 310
C C F + LK H HTGEKPF C + C ++L +H+ R
Sbjct: 36 -----VCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEG--CGKRFSLDFNLRTHV-RI 86
Query: 311 HTDKEVLEKRYVCQL--CPKQFLTSGELKYHQTT 342
HT ++ YVC C K+F S LK H T
Sbjct: 87 HTG----DRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 42.9 bits (102), Expect = 2e-05
Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 42/124 (33%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCF 229
+VC C SS +K H VH GEKP+ C + C R + +L+ H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH----------- 83
Query: 230 VNIVMNSYGTNIKKCMKRHVERIHLNIT-----KTRCELCDLRFFDKVGLKMHVMRKHTG 284
RIH T + C+ +F LK H + H
Sbjct: 84 --------------------VRIH---TGDRPYVCPFDGCNKKFAQSTNLKSH-ILTHAK 119
Query: 285 EKPF 288
K
Sbjct: 120 AKNN 123
Score = 31.7 bits (73), Expect = 0.12
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCTLLIC 86
+VC C A + +K+H +H G++PF CT C
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Score = 28.3 bits (64), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 63 NGNMKKHLRIHLGDRPFMCTLLIC 86
+ N++ H+RIH GDRP++C C
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGC 100
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 47.1 bits (113), Expect = 5e-07
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 21/104 (20%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKR 320
C+ C F K H M H G +P+ C C + K+ L H+ + HT K
Sbjct: 13 CQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTG----IKP 65
Query: 321 YVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTF 358
Y C +C K+F+ H+ V E ++
Sbjct: 66 YECNICAKRFMWRDSF--HR------HVTSCTKSYEAAKAEQNT 101
Score = 43.2 bits (103), Expect = 1e-05
Identities = 30/148 (20%), Positives = 44/148 (29%), Gaps = 45/148 (30%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVER 251
G+K Y C C T KS +H
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRH-------------------------------MS 30
Query: 252 IHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKH 311
+HL + C +C +F K L H M+ HTG KP+ C+ C + H+
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNICAKRFMWRDSFHRHV---T 86
Query: 312 TDKEVLEKRYVCQLCPKQF-----LTSG 334
+ K Y + +SG
Sbjct: 87 SC----TKSYEAAKAEQNTTEASGPSSG 110
Score = 43.2 bits (103), Expect = 1e-05
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 34/111 (30%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIK 242
S H+ +HLG +PY C C + K L H
Sbjct: 21 HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH------------------------ 56
Query: 243 KCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
+IH I C +C RF + HV + K +
Sbjct: 57 -------MKIHTGIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKA 97
Score = 40.1 bits (95), Expect = 1e-04
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRET 371
+K Y CQ C K F + H +H C CG F ++ L H++
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHM------SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-I 59
Query: 372 HRKETPFPCPFCEYKAKRKFELKSHM-KRKHTFE 404
H P+ C C K F + + +
Sbjct: 60 HTGIKPYECNICA-KR---FMWRDSFHRHVTSCT 89
Score = 28.6 bits (65), Expect = 1.3
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDL 215
H V K Y T+ S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGP 107
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYH 339
GE + C C + + H + K Y C C K+F + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY-VTSHKRN--VKVYPCPFCFKEFTRKDNMTAH 59
Query: 340 QTTVHR 345
+H+
Sbjct: 60 VKIIHK 65
Score = 44.5 bits (106), Expect = 2e-06
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRV--HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEV 225
Y C C S+ H K Y C +C T+K ++ H++ H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 39.5 bits (93), Expect = 7e-05
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 347 RVHECSECGFTFFLEKTLRAHIR-ETHRKETPFPCPFCEYKAKRKFELKSHMKRKH 401
+ C C + H R +PCPFC + RK + +H+K H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
GE Y C C+ T S+ +H H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVM-RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
RC++C + H + K + C +C K ++++H+ +
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KIIH 64
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 45.2 bits (108), Expect = 7e-07
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
+VC C +F H+K H R H EKPY C C T++ L +H +K H
Sbjct: 3 FVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 36.7 bits (86), Expect = 6e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
C C F ++ L+ H R +H E P+PC C R+ L H ++ H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
CE+C F + LK H R HT EKP+ C C+ + L H + H+
Sbjct: 5 CEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 31.7 bits (73), Expect = 0.041
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETH 372
+ +VC++C + F LK H R H C C F L H ++ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY------RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 373 RKET 376
Sbjct: 55 SGNL 58
Score = 27.8 bits (63), Expect = 0.89
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHR 345
+ F C C + L H R HT+ EK Y C LC + F L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSHTN----EKPYPCGLCNRAFTRRDLL-----IRHA 50
Query: 346 KRVH--ECSE 353
+++H E
Sbjct: 51 QKIHSGNLGE 60
Score = 25.9 bits (58), Expect = 4.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+VC C+ A ++K+H R H ++P+ C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG 34
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 282 HTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQ--LCPKQFLTSGELK 337
+G C + C I + L+ H +H +K + C C K F LK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIH----QKSFSCPEPACGKSFNFKKHLK 57
Query: 338 YHQTTVHRKRVH------ECSECGFTF 358
H ++H C G +
Sbjct: 58 EHM------KLHSDTRDYICEFSGPSS 78
Score = 41.4 bits (98), Expect = 2e-05
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 35/104 (33%)
Query: 194 HLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIK--KCMKRHV 249
G C + C + + L H + +H + K C +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH---------------IHQKSFSCPE--- 43
Query: 250 ERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
C F K LK H M+ H+ + + C +
Sbjct: 44 ------------PACGKSFNFKKHLKEH-MKLHSDTRDYICEFS 74
Score = 39.8 bits (94), Expect = 9e-05
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLE 318
C F ++ L H +H +K F C C K L H+ + H+D
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHSD----T 66
Query: 319 KRYVCQLCPKQF 330
+ Y+C+
Sbjct: 67 RDYICEFSGPSS 78
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 175 FTCDYH----SF-CSSHMKDHIRV-HLGEKPYMC--IYCAYRCTQKSDLKKHLR 220
CD+ F ++ H + H+ +K + C C K LK+H++
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 37.1 bits (87), Expect = 7e-04
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 175 FTCDYH----SF-CSSHMKDHIRVHLGEKPYMCIYC 205
F+C SF H+K+H+++H + Y+C +
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 32.5 bits (75), Expect = 0.031
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPCPF--CEYKAKRKFELKSHMKRKHTFE 404
+ CG F + L H + H + F CP C K LK HM + H+
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHSDT 66
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 51 YVC--YACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C AC + + ++K+H+++H R ++C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 45.7 bits (107), Expect = 1e-06
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETP 377
++ Y C+LC + + E H+ V C C FF + + H E+ +
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH--ESKCEYKK 69
Query: 378 FPCPFCEYKAKRKFELKSHMKRKHTFEDSLTTEE 411
C C K F + H H ++++
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHN-QNNMAPTS 102
Score = 41.8 bits (97), Expect = 4e-05
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 284 GEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTV 343
++ + C C+ + + SH + + VC C +F + + H++
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSH-------ERLCRNAAVCPYCSLRFFSPELKQEHESK- 64
Query: 344 HRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCP 381
+ C EC TF ++ H E H + P
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 31.0 bits (69), Expect = 0.21
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKR 320
C LC+ + + H + C YC + H + K+
Sbjct: 19 CRLCNAKLSSLLEQGSH---ERLCRNAAVCPYCSLRFFSPELKQEHESKCE------YKK 69
Query: 321 YVCQLCPKQFLTSGELKYHQTTVH 344
C C + F +S + HQ VH
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 29.1 bits (64), Expect = 0.97
Identities = 17/117 (14%), Positives = 27/117 (23%), Gaps = 35/117 (29%)
Query: 196 GEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHLN 255
++ Y C C + + + H R
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN------------------------------- 41
Query: 256 ITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
C C LRFF + H K C C ++ + + H H
Sbjct: 42 --AAVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 27.2 bits (59), Expect = 4.2
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 171 RYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFV 230
Y C C+ H R+ +C YC+ R ++H K E K
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTC 72
Query: 231 NIVMNSYGTNIKKCMKRHVERIH 253
M ++ + + RH +H
Sbjct: 73 LECMRTFKS--SFSIWRHQVEVH 93
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 44.4 bits (106), Expect = 2e-06
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 32/105 (30%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKK 243
H H + +KPY C C K +L H
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH------------------------- 36
Query: 244 CMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
+ +H RC +C +F LK H R H+GEKP+
Sbjct: 37 ------KTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEKPY 74
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C C ++ H VH GEKPY C C + + ++LK H R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 37.8 bits (89), Expect = 3e-04
Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 20/85 (23%)
Query: 303 LSSHIG---RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSE 353
+ H +K Y C C F G L H+ VH C+
Sbjct: 1 MGHHHHHHSHMTHS----DKPYKCDRCQASFRYKGNLASHK------TVHTGEKPYRCNI 50
Query: 354 CGFTFFLEKTLRAHIRETHRKETPF 378
CG F L+ H R H E P+
Sbjct: 51 CGAQFNRPANLKTHTR-IHSGEKPY 74
Score = 33.6 bits (78), Expect = 0.013
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
+C+ C F K L H HTGEKP+ C+ C +L +H R H+
Sbjct: 19 KCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHS 69
Score = 29.0 bits (66), Expect = 0.46
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPY 200
Y C C +++K H R+H GEKPY
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 25.9 bits (58), Expect = 5.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y C C + Y GN+ H +H G++P+ C
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRC 48
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 43.9 bits (104), Expect = 3e-06
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 184 SSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
SSH+K H R H GEKP+ C + C R + +L +H R
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 38.9 bits (91), Expect = 2e-04
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 333 SGELKYHQTTVHRKRVHECS--ECGFTFFLEKTLRAHIRETHRKETPFPC--PFCEYKAK 388
S Q R R H CS CG T+F L+AH R TH E PF C CE +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFA 60
Query: 389 RKFELKSHMKRKH 401
R EL H R H
Sbjct: 61 RSDELSRHR-RTH 72
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHI---GRKHTDKEVLEKRYVCQL--CPKQFLTSG 334
+ + C + C Y SSH+ R HT EK + C C ++F S
Sbjct: 10 IDSSRIRSHICSHPG--CGKTYFKSSHLKAHTRTHTG----EKPFSCSWKGCERRFARSD 63
Query: 335 ELKYHQTT 342
EL H+ T
Sbjct: 64 ELSRHRRT 71
Score = 33.1 bits (76), Expect = 0.019
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 264 CDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKH 311
C +F LK H R HTGEKPF C + C+ +LS H R H
Sbjct: 25 CGKTYFKSSHLKAH-TRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH 72
Score = 30.0 bits (68), Expect = 0.23
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 184 SSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
SS + ++C + C + S LK H R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
Score = 28.5 bits (64), Expect = 0.71
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 42 TRTDLLKHKYVCY--ACSYATYYNGNMKKHLRIHLGDRPFMCTLLIC 86
++C C + + ++K H R H G++PF C+ C
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGC 55
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 43.8 bits (104), Expect = 4e-06
Identities = 19/86 (22%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLE 318
E C F LK+H HT + P+ C + CD L H + H
Sbjct: 6 FENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAG----Y 59
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVH 344
C T H H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 38.0 bits (89), Expect = 4e-04
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 321 YVCQL--CPKQFLTSGELKYHQTTVHRKRVHECSE--CGFTFFLEKTLRAHIRETHRKET 376
YVC C K F +LK HQ + ++ +EC C F L L+ H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 377 PFPCPFCEYKAKRKFELKSHMKRKH 401
C + K H+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 37.6 bits (88), Expect = 5e-04
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 177 CDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
CD S +K H +VH G C++ + KH+ + H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 37.2 bits (87), Expect = 8e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 182 FCSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
+ +K H H + PY C + C R + S LK+H +
Sbjct: 14 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 42.8 bits (100), Expect = 1e-05
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 277 HVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGEL 336
H + E + C YC + + H+ +H + L YVC C L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVV-LNSSYVCVECNFLTKRYDAL 66
Query: 337 KYHQTTVH 344
H H
Sbjct: 67 SEHNLKYH 74
Score = 38.6 bits (89), Expect = 5e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETH---RKETPFPCPFCEYKAKRKFELKS 395
+Q + +EC C F H+ H + + C C + KR L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 396 HMKRKHTFEDSLT 408
H + H E++
Sbjct: 69 HNLKYHPGEENFK 81
Score = 37.4 bits (86), Expect = 0.001
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 247 RHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTG---EKPFHCHYCDYICRTKYDL 303
H ++ C+ C + D HV +H + C C+++ + L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 304 SSHIGRKHTD 313
S H + H
Sbjct: 67 SEHNLKYHPG 76
Score = 34.7 bits (79), Expect = 0.008
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH----RKRVHECSECGFTFFLEKTL 364
+ + +E Y C+ C Q +H + H + C EC F L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 365 RAHIRETHRKETPF 378
H + H E F
Sbjct: 67 SEHNLKYHPGEENF 80
Score = 32.8 bits (74), Expect = 0.048
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 27/105 (25%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKK 243
H + + E Y C YC ++ + H+ +H N+V+NS
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH------PNVVLNS------- 49
Query: 244 CMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
C C+ L H ++ H GE+ F
Sbjct: 50 --------------SYVCVECNFLTKRYDALSEHNLKYHPGEENF 80
Score = 30.1 bits (67), Expect = 0.41
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 171 RYVCFTCDYHSFCSSHMKDHIR-VHLG---EKPYMCIYCAYRCTQKSDLKKHLRKKH 223
Y C C + + + H+ H Y+C+ C + + L +H K H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 28.6 bits (63), Expect = 1.4
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 367 HIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
H ++ + E + C +C ++ H+ +H
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHP 43
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.5 bits (98), Expect = 2e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 280 RKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELK 337
+P+ C CD +L+ HI R HT +K + C++C + F S L
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTG----QKPFQCRICMRNFSRSDHLT 66
Query: 338 YHQTT 342
H T
Sbjct: 67 THIRT 71
Score = 38.8 bits (91), Expect = 2e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S + HIR+H G+KP+ C C ++ L H+R
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 35.4 bits (82), Expect = 0.003
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 262 ELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
E CD RF L H +R HTG+KPF C C L++HI R HT
Sbjct: 25 ESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT 73
Score = 33.0 bits (76), Expect = 0.016
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 36/103 (34%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTN 240
+++ +++ +PY C C R ++ +L +H+
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHI--------------------- 41
Query: 241 IKKCMKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHT 283
RIH +C +C F L H +R HT
Sbjct: 42 ----------RIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHT 73
Score = 33.0 bits (76), Expect = 0.021
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 353 ECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
C F L HIR H + PF C C R L +H++ HT
Sbjct: 26 SCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 73
Score = 26.5 bits (59), Expect = 3.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 63 NGNMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRS 102
+ + +H+RIH G +PF C + C + F RS
Sbjct: 34 SDELTRHIRIHTGQKPFQCRI-----------CMRNFSRS 62
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 41.3 bits (98), Expect = 3e-05
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR-----KKHEVKHC 228
SS + H+ +H +PY C YC R QKSD+KKH K H+ + C
Sbjct: 13 RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 39.7 bits (94), Expect = 9e-05
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S MK H +H GEKP+ C C +Q S+L H R
Sbjct: 41 QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 39.7 bits (94), Expect = 1e-04
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKR 320
C++C F L H + H+ +P+ C YC K D+ H HT EK
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTG----EKP 57
Query: 321 YVCQLCPKQFLTSGELKYHQ 340
+ CQ+C K F S L H
Sbjct: 58 HKCQVCGKAFSQSSNLITHS 77
Score = 34.3 bits (80), Expect = 0.008
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 321 YVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEKTLRAHIRETHRK 374
+ C++C K F S L H +H C CG F + ++ H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTG 54
Query: 375 ETPFPCPFCEYKAKRKFELKSHMKRKHT 402
E P C C + L +H RKHT
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITH-SRKHT 81
Score = 33.5 bits (78), Expect = 0.013
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSECGFTFFLEK 362
H+D + Y CQ C K+F ++K H +H +C CG F
Sbjct: 22 LIHSD----TRPYPCQYCGKRFHQKSDMKKHT------FIHTGEKPHKCQVCGKAFSQSS 71
Query: 363 TLRAHIR 369
L H R
Sbjct: 72 NLITHSR 78
Score = 29.3 bits (67), Expect = 0.44
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHM---KRKHTFE 404
+C CG +F TL H+ H P+PC +C K F KS M HT E
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCG-KR---FHQKSDMKKHTFIHTGE 55
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 39.7 bits (94), Expect = 9e-05
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYH 339
+ + + C C DLS H R HT EK Y C C K F+ L H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTG----EKPYKCDECGKAFIQRSHLIGH 65
Query: 340 QTTVHRKRVH 349
RVH
Sbjct: 66 H------RVH 69
Score = 39.3 bits (93), Expect = 1e-04
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
S + Y C C + SDL KH R
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 39
Score = 36.7 bits (86), Expect = 0.001
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 183 CSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
SS + H R H GEKPY C C Q+S L H R
Sbjct: 30 HSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 30.9 bits (71), Expect = 0.12
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 333 SGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFE 392
SG + +R ++C ECG +F L H R TH E P+ C C KA F
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECG-KA---FI 57
Query: 393 LKSHM---KRKHTFE 404
+SH+ R HT
Sbjct: 58 QRSHLIGHHRVHTGS 72
Score = 28.2 bits (64), Expect = 1.1
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 183 CSSHMKDHIRVHLGEKPY 200
SH+ H RVH G P
Sbjct: 58 QRSHLIGHHRVHTGSGPS 75
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C R LK HLR
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
CE+C RF LK H +R HTG P
Sbjct: 13 PCEICGTRFRHLQTLKSH-LRIHTGSGPS 40
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPY 200
Y C C +K H+R+H G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.3 bits (72), Expect = 0.041
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 279 MRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
GEKP+ C C R L SH+ R HT
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIHT 35
Score = 30.2 bits (69), Expect = 0.082
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPF 79
Y C C + +K HLRIH G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTT 342
EK Y C++C +F LK H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 25.5 bits (57), Expect = 4.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPF 378
+ C CG F +TL++H+R H P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR-IHTGSGPS 40
Score = 24.8 bits (55), Expect = 8.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 371 THRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ E P+PC C + + LKSH+ R HT
Sbjct: 5 SSGGEKPYPCEICGTRFRHLQTLKSHL-RIHTGS 37
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 39.0 bits (92), Expect = 1e-04
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 273 GLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLT 332
G H+GEKP+ C C L H R HT EK Y C C K F
Sbjct: 1 GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTG----EKPYKCLECGKAFSQ 54
Query: 333 SGELKYHQTTVHRKRVH 349
+ L HQ R+H
Sbjct: 55 NSGLINHQ------RIH 65
Score = 38.6 bits (91), Expect = 2e-04
Identities = 21/49 (42%), Positives = 24/49 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
Y C C SS + H RVH GEKPY C+ C +Q S L H R
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 34.4 bits (80), Expect = 0.007
Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 32/99 (32%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHV 249
+H GEKPY C+ C ++ S L +H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQH------------------------------- 33
Query: 250 ERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
+R+H +C C F GL H R HT
Sbjct: 34 QRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSGPSS 71
Score = 27.4 bits (62), Expect = 2.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPY 200
Y C C +S + +H R+H
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 27.0 bits (61), Expect = 2.4
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKR 399
+H C ECG F L H R H E P+ C C + L +H +R
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH-QR 63
Query: 400 KHTFE 404
HT
Sbjct: 64 IHTSG 68
Score = 25.9 bits (58), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + + +H R+H G++P+ C
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCL 46
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C R Q + L+ H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPY 200
Y C TC +H++ H+ +H G P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 30.6 bits (70), Expect = 0.072
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
+CE C RF L+ H + HTG P
Sbjct: 13 KCETCGARFVQVAHLRAH-VLIHTGSGPS 40
Score = 27.5 bits (62), Expect = 0.93
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 279 MRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
GEKP+ C C L +H+ HT
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHV-LIHT 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH 349
EK Y C+ C +F+ L+ H +H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHV------LIH 34
Score = 26.3 bits (59), Expect = 2.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPF 79
Y C C +++ H+ IH G P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 39.6 bits (92), Expect = 1e-04
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 23/98 (23%)
Query: 193 VHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRHVERI 252
+ + C + +L H+ +H + N C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH----------VGGPEQNNHVCYWEE---- 64
Query: 253 HLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
C F K L H +R HTGEK
Sbjct: 65 --------CPREGKSFKAKYKLVNH-IRVHTGEKSGPS 93
Score = 37.6 bits (87), Expect = 7e-04
Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 252 IHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYCDYI--------CRTKYDL 303
I + CD F L HV +H G + H C + + KY L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 304 SSHIGRKHTDKEVLEKRYVC 323
+HI R HT EK
Sbjct: 79 VNHI-RVHT----GEKSGPS 93
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHE---------CSECGFTFFLEKTLRAHI 368
+ + C + F T EL H T H + C G +F + L HI
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 369 RETHRKETPFPC 380
R H E P
Sbjct: 83 R-VHTGEKSGPS 93
Score = 31.1 bits (70), Expect = 0.14
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 344 HRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKA--------KRKFELKS 395
+ C TF L H+ H C ++ K K++L +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 396 HMKRKHT 402
H+ R HT
Sbjct: 81 HI-RVHT 86
Score = 30.7 bits (69), Expect = 0.24
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 174 CFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
C + +HIRVH GEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 26.9 bits (59), Expect = 4.6
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 65 NMKKHLRIHLGDRPFMCT 82
+ H+R+H G++ +
Sbjct: 77 KLVNHIRVHTGEKSGPSS 94
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
G+KPY CI C Q + L +H R H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 31.4 bits (72), Expect = 0.035
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCP 381
+EC ECG F +L H R H E P
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 29.1 bits (66), Expect = 0.29
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG+KP+ C C L H HT EK
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG----EKPSGP 44
Score = 26.4 bits (59), Expect = 2.1
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
T +K Y C C K F+ + L H H
Sbjct: 5 SSGTG----KKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 26.4 bits (59), Expect = 2.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
C C F L H HTGEKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 26.4 bits (59), Expect = 2.3
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 172 YVCFTCDYHSFCSSHMKDHIR-VHLGEKPYMC 202
Y C C ++ + H R H GEKP
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQF 330
+ KP+ C C L+ HI + HT E+ + CQ+
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS----ERPHKCQVWVSGP 51
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
C+ C F L H+ + HT E+P C
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.6 bits (75), Expect = 0.017
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
KPY+C C ++ L H+++ H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 32.6 bits (75), Expect = 0.020
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVH-RKRVHECSECGFTF 358
K Y+CQ C K F L H VH +R H+C
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 32.2 bits (74), Expect = 0.028
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 172 YVCFTCDYHSFCSSHMKDHI-RVHLGEKPYMCIYC 205
Y+C +C H+ HI +VH E+P+ C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 31.0 bits (71), Expect = 0.070
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPCPFC 383
+ C CG F L HI++ H E P C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 26.0 bits (58), Expect = 3.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 371 THRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ P+ C C R L H+K+ HT E
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 36.8 bits (86), Expect = 4e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +QK L H+R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 29.8 bits (68), Expect = 0.13
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
GEKP+ C C K L HI R HT
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVHI-RVHT 35
Score = 29.5 bits (67), Expect = 0.16
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPY 200
Y C C + HIRVH G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 26.8 bits (60), Expect = 1.4
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 250 ERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
RC+ C F K L +H +R HTG P
Sbjct: 3 SGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVHTGSGPS 40
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPF 378
+ C +CG F + +L HIR H P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 24.8 bits (55), Expect = 6.8
Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH 349
EK Y C C K F G L H RVH
Sbjct: 4 GSSGG----EKPYRCDQCGKAFSQKGSLIVHI------RVH 34
Score = 24.8 bits (55), Expect = 8.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPF 79
Y C C A G++ H+R+H G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 190 HIRVHLGEKPYMCIY--CAYRCTQKSDLKKHLRK 221
GEKP+ C + C +R ++ +L +H R
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 33.8 bits (78), Expect = 0.006
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 279 MRKHTGEKPFHCHY--CDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQ 324
TGEKPF C + C + +LS H R H+ K
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSG----VKPSGPS 46
Score = 30.7 bits (70), Expect = 0.076
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 366 AHIRETHRKETPFPC--PFCEYKAKRKFELKSHMKRKHT 402
+ + E PF C P C ++ R EL H R H+
Sbjct: 2 SSGS-SGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHS 38
Score = 27.7 bits (62), Expect = 0.83
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 69 HLRIHLGDRPFMCTLLIC 86
G++PF CT C
Sbjct: 3 SGSSGTGEKPFACTWPGC 20
Score = 27.3 bits (61), Expect = 1.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
S + H R H G KP
Sbjct: 27 SDELSRHRRSHSGVKPSGP 45
Score = 26.9 bits (60), Expect = 1.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 65 NMKKHLRIHLGDRPFMCT 82
+ +H R H G +P +
Sbjct: 29 ELSRHRRSHSGVKPSGPS 46
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 7e-04
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C KS+L H R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 32.5 bits (75), Expect = 0.013
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C TK +L H R HT E
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVH-QRTHTG----ESGPSS 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S++ H R H GE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 27.8 bits (63), Expect = 0.61
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 343 VHRKRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
EC+EC F + L H R TH E+
Sbjct: 2 SS-GSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 24.7 bits (55), Expect = 8.1
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y C C A N+ H R H G+
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+PY+C C T +S+L KH +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
Score = 30.2 bits (69), Expect = 0.092
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y+C C S++ H ++H GEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.20
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQ 324
TGE+P+ C C + +L H + HT EK
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKH-QKIHTG----EKPSGPS 44
Score = 26.3 bits (59), Expect = 2.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y+C C A N+ KH +IH G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C T +S+L H +
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
Score = 30.6 bits (70), Expect = 0.070
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S++ H ++H GEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.083
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C + +L +H + HT EK
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTG----EKPSGP 43
Score = 25.9 bits (58), Expect = 3.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y C C A N+ H +IH G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C R TQ S L H R
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
Score = 31.0 bits (71), Expect = 0.060
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C +S + H RVH GEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKPF C C L SH R HT EK
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTG----EKPSGP 43
Score = 25.2 bits (56), Expect = 6.9
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C N + H R+H G++P +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.0 bits (87), Expect = 0.001
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 302 DLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLE 361
+L + K ++ + Q L Y C C F
Sbjct: 28 ELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSS 87
Query: 362 KTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHT 402
+L+ HIR T CP C+ + H+ +KH
Sbjct: 88 VSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 36.8 bits (84), Expect = 0.003
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 168 VSYRYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKH 223
++VC C S +K HIR E +C C T H+ KKH
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 29.1 bits (64), Expect = 1.2
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 276 MHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGE 335
++ + F C C + L HI E VC +C K+F ++
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-------EHTKVCPVCKKEFTSTDS 115
Query: 336 LKYHQTTVHR 345
H H
Sbjct: 116 ALDHVCKKHN 125
Score = 27.6 bits (60), Expect = 4.4
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHC 228
S + ++C C + LK+H+R K C
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVC 103
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C T+KS L H +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
Score = 31.0 bits (71), Expect = 0.047
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H ++H GEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C K L H + HT EK
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTG----EKPSGP 43
Score = 25.6 bits (57), Expect = 4.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ECS CG +F + L H + H E P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + + H +IH G++P +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C K +L H +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
Score = 31.7 bits (73), Expect = 0.029
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C +K++L H + HT E+
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTG----ERPSGP 43
Score = 31.0 bits (71), Expect = 0.059
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C ++ H +VH GE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 27.9 bits (63), Expect = 0.60
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
+CE C + K L MH + HTGE+P
Sbjct: 14 KCEKCGKGYNSKFNLDMH-QKVHTGERPSGPS 44
Score = 25.2 bits (56), Expect = 5.6
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C N+ H ++H G+RP +
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY+C C T +S+L KH +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
Score = 30.6 bits (70), Expect = 0.075
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y+C C S++ H ++H +KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 28.6 bits (65), Expect = 0.37
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C + +L H + HT +K
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKH-QKIHTK----QKPSGP 43
Score = 27.9 bits (63), Expect = 0.81
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y+C C A N+ KH +IH +P +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C T KS L+ H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
Score = 31.7 bits (73), Expect = 0.029
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S ++ H + H GE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 30.2 bits (69), Expect = 0.099
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C K L H + HT E+
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTG----ERHSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++CS+CG +F + LR H + H E
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 27.1 bits (61), Expect = 1.5
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + + ++ H + H G+R +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C+ C ++ DL H R
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
Score = 31.0 bits (71), Expect = 0.048
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKP+ C C + + DL H R HT EK
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTG----EKLSGP 43
Score = 31.0 bits (71), Expect = 0.063
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C + H RVH GEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 26.0 bits (58), Expect = 3.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C ++ H R+H G++ +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C T+KS L H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 30.9 bits (71), Expect = 0.050
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C K L H + HT E+
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTG----ERHSGP 43
Score = 30.9 bits (71), Expect = 0.058
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H + H GE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++CS+CG F + L H + +H E
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
Score = 24.8 bits (55), Expect = 9.0
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + H + H G+R +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C R TQ S L H R
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
Score = 31.4 bits (72), Expect = 0.041
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C +SH+ H RVH GEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.30
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKPF C C L SH R HT EK
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTG----EKPSGP 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
+CE C RF L H R HTGEKP
Sbjct: 14 QCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C N ++ H R+H G++P +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + DL H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C C + H VH GEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.34
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C + DL +H HT EK
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTH-HMVHTG----EKPSGP 43
Score = 26.0 bits (58), Expect = 3.2
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C ++ H +H G++P +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.8
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C ECG F + L H H E P
Sbjct: 4 GSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +KS L H R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
Score = 31.4 bits (72), Expect = 0.043
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R+H GE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.096
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C K L H R HT E
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVH-QRIHTG----ENPSGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ECS+CG +F + L H R H E P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C + L KHLR
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 30.2 bits (69), Expect = 0.088
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ ++ +C ECG F +L H+R +H + P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
Score = 29.9 bits (68), Expect = 0.15
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C + S + H+R H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 28.3 bits (64), Expect = 0.43
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
+ C C ++ ++ KHLR H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 28.3 bits (64), Expect = 0.49
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
+C+ C + F L H +R H P
Sbjct: 14 QCKECGMNFSWSCSLFKH-LRSHERTDPSGP 43
Score = 26.8 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
TGEKPF C C L H+ R H
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHE 36
Score = 25.2 bits (56), Expect = 6.5
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 305 SHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
S G T EK + C+ C F S L H +
Sbjct: 2 SS-GSSGTG----EKPFQCKECGMNFSWSCSLFKHLRS 34
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C TQ S L H R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
Score = 31.0 bits (71), Expect = 0.054
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +SH+ +H R+H G KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 30.6 bits (70), Expect = 0.086
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C + L++H R HT K
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLANH-QRIHTG----VKPSGP 43
Score = 25.2 bits (56), Expect = 5.5
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
C C F L H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 24.8 bits (55), Expect = 8.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C N ++ H RIH G +P +
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C+ C +++S L H +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
Score = 31.0 bits (71), Expect = 0.062
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C S + H ++H GEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKPF C C + L+ H + HT EK
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVH-HKLHTG----EKPSGP 43
Score = 25.6 bits (57), Expect = 5.4
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + H ++H G++P +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.9
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C ECG F L H + H E P
Sbjct: 13 FKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C S L KH R
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
Score = 32.5 bits (75), Expect = 0.017
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +S + H RVH GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP++C C R L H R H+ EK
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSG----EKPSGP 43
Score = 27.5 bits (62), Expect = 0.99
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + + + KH R+H G++P +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 26.8 bits (60), Expect = 2.0
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
C ECG +F L H R H E P
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + KS L H+R
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
Score = 31.8 bits (73), Expect = 0.031
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S++ H+R H GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
GEKP+ C C +K L H+ R H+ EK
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSG----EKPSGP 43
Score = 27.9 bits (63), Expect = 0.67
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ CSECG F + L H+R TH E P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + H+R H G++P +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +QKS L H R
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 31.0 bits (71), Expect = 0.048
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKP+ C+ C K LS+H R HT EK
Sbjct: 5 SSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTG----EKPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R H GEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.89
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ C+ECG TF + L AH R TH E P
Sbjct: 13 YGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.4
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + H R H G++P +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.0
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSE 353
+ EK Y C C K F L HQ T ++ S
Sbjct: 5 SSGSG----EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
EKPY C C ++ +L H R
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
Score = 29.4 bits (67), Expect = 0.19
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+ EKP+ C C + +L H R H EK
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMG----EKTSGP 43
Score = 29.0 bits (66), Expect = 0.26
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C ++ H RVH+GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.1 bits (56), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C N+ H R+H+G++ +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 24.8 bits (55), Expect = 9.5
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C +CG + L H R H E
Sbjct: 4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G KPY C CA + KS L H R
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG KP+ C C K L H R HT K
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTG----VKPSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R H G KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 28.7 bits (65), Expect = 0.40
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ CS+C TF L+ L H R +H P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
Score = 25.2 bits (56), Expect = 6.0
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C+ + H R H G +P +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G++PY CI C KS L H R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
Score = 30.2 bits (69), Expect = 0.093
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R H GEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG++P+ C C +TK L H R HT EK
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICH-RRSHTG----EKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+EC ECG F + +L H R +H E P
Sbjct: 13 YECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.8
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A ++ H R H G++P +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.2
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSE 353
T ++ Y C C K F T L H+ + ++ S
Sbjct: 5 SSGTG----QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE P++C C T K++L H +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
Score = 30.9 bits (71), Expect = 0.048
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGE PF C C + K +L H + HT E+
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIH-QKIHTG----ERPSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
++C C +++ H ++H GE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
++C C + N+ H +IH G+RP +
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
CSECG F + L H + H E P
Sbjct: 13 FICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
+GEK Y C C +Q S L+ H R
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
Score = 31.7 bits (73), Expect = 0.027
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C SSH++ H RVH GEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.45
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
GEK + C C L +H R HT EK
Sbjct: 5 SSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTG----EKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY+C C QKS L +H R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
Score = 30.6 bits (70), Expect = 0.068
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPYMC 202
Y+C C SF SH+ H R+H GEKP
Sbjct: 13 YICNECG-KSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C K L+ H R HT EK
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTG----EKPSGP 43
Score = 25.2 bits (56), Expect = 7.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y+C C + ++ +H RIH G++P +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G+KP+ C +C K +L H R
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
Score = 31.7 bits (73), Expect = 0.025
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG+KPF C +C R K +L +H R HT EK
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTH-QRIHTG----EKSGPS 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C ++ H R+H GEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 27.5 bits (62), Expect = 0.89
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 350 ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
EC+ CG +F + L H R H E P
Sbjct: 14 ECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + GN+ H RIH G++ +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
+GEK + C C +Q S L+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 31.7 bits (73), Expect = 0.028
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C CD +S ++ H VH+GEKP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 11/44 (25%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
GEK + C CD L H H EK
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQ-NVHVG----EKPSGP 43
Score = 26.4 bits (59), Expect = 2.5
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ ++ +C EC F +LR H H E P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.5
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C +++ H +H+G++P +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C KS+L H R
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
Score = 30.1 bits (69), Expect = 0.094
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKPF C C TK +L H R HT EK
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVH-QRTHTG----EKPSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C S++ H R H GEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.45
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
ECSEC F + L H R TH E P
Sbjct: 13 FECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C A N+ H R H G++P +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY+C YC ++L +H R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
Score = 30.9 bits (71), Expect = 0.050
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
YVC C S+ + H R+H GEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.26
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKP+ C YC +L H R HT EK
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRH-QRIHTG----EKPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
YVC C A + + +H RIH G++P +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+ Y C C +KS L H R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR 33
Score = 29.8 bits (68), Expect = 0.15
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGE+ + C C K L H R HT EK
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMH-QRIHTG----EKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R+H GEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ECSECG F + TL H R H E P
Sbjct: 13 YECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C+ TQK+ L +H +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
Score = 30.6 bits (70), Expect = 0.075
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +H+ H + H GEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C K L+ H + HT EK
Sbjct: 5 SSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTG----EKPSGP 43
Score = 26.3 bits (59), Expect = 2.6
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+EC C F + L H + TH E P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSE 353
T EK Y C++C K F L HQ T ++ S
Sbjct: 5 SSGTG----EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 9.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C CS A ++ +H + H G++P +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 33.8 bits (78), Expect = 0.004
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE PY+C C TQ+ L H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 29.2 bits (66), Expect = 0.24
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
C C F + L +H R + P
Sbjct: 13 LCGQCGKSFTQRGSLAVH-QRSCSQSGPS 40
Score = 27.6 bits (62), Expect = 0.73
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPY 200
Y+C C SF + H R P
Sbjct: 12 YLCGQCG-KSFTQRGSLAVHQRSCSQSGPS 40
Score = 26.9 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH 349
E Y+C C K F G L HQ R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ------RSC 34
Score = 26.5 bits (59), Expect = 2.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPF 79
Y+C C + G++ H R P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 26.5 bits (59), Expect = 2.2
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
GE P+ C C + L+ H R +
Sbjct: 4 GSSGGETPYLCGQCGKSFTQRGSLAVHQ-RSCS 35
Score = 25.7 bits (57), Expect = 4.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPF 378
+ C +CG +F +L H R + + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQR-SCSQSGPS 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C +S L +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
Score = 31.3 bits (72), Expect = 0.041
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPYMC 202
+ C C SFC S + H VH EKP
Sbjct: 13 FKCDICG-KSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 29.0 bits (66), Expect = 0.29
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKPF C C + L+ H HT EK
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTA----EKPSGP 43
Score = 25.1 bits (56), Expect = 7.1
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + + +H +H ++P +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.9
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C CG +F L H H E P
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C + S L H R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR 33
Score = 31.7 bits (73), Expect = 0.034
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C SS + H R+H GEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKPF C C L++H R HT EK
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATH-QRIHTG----EKPSGP 43
Score = 26.7 bits (60), Expect = 2.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
EC+ECG +F + L H R H E P
Sbjct: 13 FECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + + + H RIH G++P +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+P+ C C ++S L HLR
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 30.6 bits (70), Expect = 0.074
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
SH+ H+R+H EK
Sbjct: 25 RSHLAGHLRLHSREKSSGP 43
Score = 29.0 bits (66), Expect = 0.30
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GE+PF C+ C + L+ H+ R H+ EK
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHL-RLHSR----EKSSGP 43
Score = 26.7 bits (60), Expect = 2.1
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
C C F + L H +R H+ EK
Sbjct: 15 CNECGKGFGRRSHLAGH-LRLHSREKSSGP 43
Score = 25.6 bits (57), Expect = 4.6
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ +R +C+ECG F L H+R H +E
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 25.2 bits (56), Expect = 7.1
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C ++ HLR+H ++ +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEK Y C C ++ L KH R
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+ + H R+H GEKP
Sbjct: 25 APCLLKHERLHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEK ++C C L H R H+ EK
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSG----EKPSGP 43
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + + KH R+H G++P +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.1
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ C ECG +F L H R H E P
Sbjct: 13 YNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.005
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDK 314
KPF C C+Y R+K +L +H+ R T+K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.7 bits (63), Expect = 0.36
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 377 PFPCPFCEYKAKRKFELKSHMKRKHT 402
PF C CEY + K LK+HM R T
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMNRHST 34
Score = 26.8 bits (58), Expect = 1.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKHEVK 226
KP+ C C Y KS+LK H+ + K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C QK++L +H R
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
Score = 29.8 bits (68), Expect = 0.15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +++ H R+H GEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C K +L+ H R HT EK
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTG----EKPSGP 43
Score = 25.5 bits (57), Expect = 5.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A N+ +H RIH G++P +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+ Y C C QKS L H R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R+H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGE+ + C C K LS H R H EK
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMH-QRIHRG----EKPSGP 43
Score = 27.5 bits (62), Expect = 0.99
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ECSECG F + TL H R HR E P
Sbjct: 13 YECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 25.2 bits (56), Expect = 6.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + H RIH G++P +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C S L++H R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
Score = 30.6 bits (70), Expect = 0.064
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S +++H R+H GEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.41
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP++C C L H R HT EK
Sbjct: 5 SSGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTG----EKPSGP 43
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A ++ +++H RIH G++P +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G KPY+C C KS L H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33
Score = 30.9 bits (71), Expect = 0.048
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
YVC C S++ H R H GE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 30.9 bits (71), Expect = 0.057
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG KP+ C+ C R+K L H R HT E
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTG----ESGPSS 43
Score = 28.2 bits (64), Expect = 0.46
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ C+ECG F + L H R TH E+
Sbjct: 13 YVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 25.1 bits (56), Expect = 6.9
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
YVC C A + H R H G+
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G PY C C + K L H R
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 31.0 bits (71), Expect = 0.049
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C+ + H R+H EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
G P+ C C+ K L H R HT EK
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTR----EKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ ++CS+C +F + L H R H +E P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 25.2 bits (56), Expect = 6.3
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + + H R+H ++P +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEK + C C S L+ H R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR 33
Score = 29.1 bits (66), Expect = 0.23
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPYMC 202
+ C C +FC S ++ H RVH+GEK
Sbjct: 13 HTCDECG-KNFCYISALRIHQRVHMGEKCSGP 43
Score = 27.2 bits (61), Expect = 1.2
Identities = 11/44 (25%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEK C C L H R H EK
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIH-QRVHMG----EKCSGP 43
Score = 26.4 bits (59), Expect = 2.3
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ ++ H C ECG F LR H R H E
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGP 43
Score = 24.9 bits (55), Expect = 9.1
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH 349
EK + C C K F L+ HQ RVH
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQ------RVH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE PY C C ++K L H R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR 33
Score = 30.9 bits (71), Expect = 0.052
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGE P+ CH C KY L SH R H EK
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQ-RTHAG----EKPSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C + H R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ + +EC ECG F + L +H R TH E P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
K + C C T KS L +H R
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C SH+ H R+H GEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.84
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+ K CH C K L+ H R HT EK
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTG----EKPSGP 43
Score = 26.4 bits (59), Expect = 2.5
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
H+C ECG F L+ L H R H E P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 26.4 bits (59), Expect = 2.8
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C+ C ++ +H RIH G++P +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G+K + C C TQ S L H R
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
Score = 30.6 bits (70), Expect = 0.079
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C SS + H R+H GEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
G+K F C+ C L+ H R HT EK
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVH-QRIHTG----EKPSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 33.8 bits (77), Expect = 0.006
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 171 RYVCFTCDYHSFCSSHMKDHIRVHLGEKPYMCIYCA 206
+ C C H+ H H GEKPY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 30.3 bits (68), Expect = 0.092
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHYC 293
CE+C F D L H H+GEKP+
Sbjct: 14 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 28.4 bits (63), Expect = 0.52
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLC 326
K C C I R Y L+ H H+ EK Y
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK-LSHSG----EKPYSSGPS 46
Score = 27.2 bits (60), Expect = 1.3
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 346 KRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFC 383
++ C CG F L H +H E P+
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 27.2 bits (60), Expect = 1.5
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 48 KHKYVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
+ + C C ++ +H H G++P+
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 25.3 bits (55), Expect = 6.5
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSEC 354
K+ C++C K F L H+ + ++ +
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C S H R
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
Score = 31.8 bits (73), Expect = 0.028
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C + +S H R H GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.062
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQ 324
+GEKPF C C T SH R H+ EK
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSG----EKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C Y N H R H G++P +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.7
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C ECG F+ +H R +H E P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQR-SHSGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
+ EK + C+ C K F T+ + HQ +
Sbjct: 5 SSGSG----EKPFKCEECGKGFYTNSQCYSHQRS 34
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ CI C + L +H R
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
Score = 29.8 bits (68), Expect = 0.14
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C + H R+H GEKP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.20
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKPF C C L+ H R HT EK
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTG----EKPSGP 43
Score = 25.6 bits (57), Expect = 4.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C A + + +H RIH G++P +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.007
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+ + C C Q S+ +H R
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 29.0 bits (66), Expect = 0.24
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPYMC 202
+ C C F +S+ H R+H GEKP
Sbjct: 13 HRCSDCG-KFFLQASNFIQHRRIHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.37
Identities = 10/44 (22%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
GE+ C C + H R HT EK
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTG----EKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ H +R H CS+CG F H R H E P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 6.8
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C N +H RIH G++P +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C S L +H R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
Score = 30.6 bits (70), Expect = 0.079
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C + R LS H R HT EK
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRH-QRIHTG----EKPSGP 43
Score = 30.6 bits (70), Expect = 0.080
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +S++ H R+H GEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C +N + +H RIH G++P +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.5
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
C C F L H R HTGEKP
Sbjct: 15 CNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.007
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C TQ S L H R
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
Score = 30.5 bits (70), Expect = 0.071
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+SH+ +H R+H GEKP
Sbjct: 25 NSHLTNHWRIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.70
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKP+ C+ C + L++H R HT EK
Sbjct: 5 SSGSGEKPYKCNECGKVFTQNSHLTNH-WRIHTG----EKPSGP 43
Score = 25.1 bits (56), Expect = 5.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C N ++ H RIH G++P +
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + + L H R
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C + H R+H G+KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 29.0 bits (66), Expect = 0.31
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C + LS H R H+ +K
Sbjct: 5 SSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSG----KKPSGP 43
Score = 25.9 bits (58), Expect = 3.5
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
ECS CG F ++L H R H + P
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
Score = 25.5 bits (57), Expect = 4.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + ++ H RIH G +P +
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 33.3 bits (77), Expect = 0.007
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C KS L H R
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
Score = 28.3 bits (64), Expect = 0.53
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 27.9 bits (63), Expect = 0.58
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+EC+ECG F + L H R TH +
Sbjct: 13 YECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKP+ C+ C K L H R H
Sbjct: 5 SSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAG----VSGPSS 43
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y C C A + + H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C S L H R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 30.6 bits (70), Expect = 0.069
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H R+H GEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQ 324
TGEKP+ C C R L+ H R HT EK
Sbjct: 5 SSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIHTG----EKPSGPS 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + Y ++ H RIH G++P +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 7.5
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 16/51 (31%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVH------ECSE 353
T EK Y C +C K F L HQ R+H S
Sbjct: 5 SSGTG----EKPYKCDVCHKSFRYGSSLTVHQ------RIHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 9.6
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C C +F +L H R H E P
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.009
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C TQ S L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+SH+ H +H GEKP
Sbjct: 25 NSHLARHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.51
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C + L+ H HT EK
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARH-RGIHTG----EKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.009
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C TQ S L +H R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
Score = 30.6 bits (70), Expect = 0.072
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+SH+ H RVH G KP
Sbjct: 25 NSHLARHRRVHTGGKPSGP 43
Score = 27.9 bits (63), Expect = 0.63
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C + L+ H R HT K
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARH-RRVHTG----GKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.009
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C Q L HLR
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
Score = 30.5 bits (70), Expect = 0.081
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C + H+ H+R+H GEKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.094
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKPF C C R L+SH R HT EK
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASH-LRIHTG----EKPSGP 43
Score = 26.7 bits (60), Expect = 2.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
C+ C F + L H +R HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASH-LRIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C A N ++ HLRIH G++P +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +Q S L +H R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
Score = 30.2 bits (69), Expect = 0.12
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+S + H R+H GEKP
Sbjct: 25 TSKLARHQRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.57
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C L+ H R HT EK
Sbjct: 5 SSGTGEKPYKCNECGKAFSQTSKLARH-QRIHTG----EKPSGP 43
Score = 25.6 bits (57), Expect = 4.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + +H RIH G++P +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.009
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+P+ C C Q + L +H R
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33
Score = 30.6 bits (70), Expect = 0.076
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C S+H+ H R+H GEKP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.56
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGE+P C+ C L H R HT EK
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTG----EKPSGP 43
Score = 25.5 bits (57), Expect = 4.3
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + + ++ +H RIH G++P +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C Q+ L +H R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C H+ H RVH GEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKPF C C + L+ H R HT EK
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTG----EKPSGP 43
Score = 25.6 bits (57), Expect = 4.5
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + ++ +H R+H G++P +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.010
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + L +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 30.2 bits (69), Expect = 0.087
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H H EKP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
GEKP+ C C Y L+ H HT EK
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHW-ITHTR----EKPSGP 43
Score = 26.0 bits (58), Expect = 3.3
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ ++ ++CSECG +F L H TH +E P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 24.8 bits (55), Expect = 9.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + + + +H H ++P +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.8 bits (76), Expect = 0.010
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C TQ S L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
Score = 30.1 bits (69), Expect = 0.10
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+SH+ H +H GEKP
Sbjct: 25 NSHLVRHRGIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.68
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C + L H HT EK
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRH-RGIHTG----EKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.010
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G K + C C T+KS L H +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
Score = 30.6 bits (70), Expect = 0.084
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG K F C C K LS H + HT EK
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTG----EKPSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C S + H ++H GEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
EC+ECG F + TL H + H E P
Sbjct: 13 FECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + + L +H R
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C + + H RVH GEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.1
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C L+ H R H+ EK
Sbjct: 5 SSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSG----EKPSGP 43
Score = 25.5 bits (57), Expect = 5.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A ++ ++ +H R+H G++P +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.4
Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
EC C F +L H R H E P
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 33.9 bits (77), Expect = 0.011
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 184 SSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHC 228
S ++HLG++ C C ++S L + K + C
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--KTPMCEKC 45
Score = 30.8 bits (69), Expect = 0.14
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 310 KHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIR 369
K + ++ C C F+ ++T+ R++ C +C E L
Sbjct: 8 KRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEG 60
Query: 370 ETHRKETPF 378
+
Sbjct: 61 -NESGKKTS 68
Score = 28.5 bits (63), Expect = 0.97
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 12/64 (18%)
Query: 279 MRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKY 338
+ H G++ C C I + LS K +C+ C K L
Sbjct: 10 QKIHLGDRSQKCSKCGIIFIRRSTLSRR------------KTPMCEKCRKDSCQEAALNK 57
Query: 339 HQTT 342
+
Sbjct: 58 DEGN 61
Score = 28.1 bits (62), Expect = 1.1
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 332 TSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKF 391
+SG Q R +CS+CG F R T + C C + ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF--------IRRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 392 ELKSHMKRKHTFEDS 406
L + + + +
Sbjct: 54 ALNKD-EGNESGKKT 67
Score = 26.2 bits (57), Expect = 6.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 64 GNMKKHLRIHLGDRPFMCT 82
G+ K +IHLGDR C+
Sbjct: 4 GSSGKRQKIHLGDRSQKCS 22
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C + S L H R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33
Score = 30.6 bits (70), Expect = 0.077
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C +S + H R+H GE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 28.3 bits (64), Expect = 0.53
Identities = 13/44 (29%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP C C L H R HT E
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVH-QRIHTG----ENPSGP 43
Score = 26.3 bits (59), Expect = 2.8
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
HEC ECG +F L H R H E P
Sbjct: 13 HECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
Score = 26.0 bits (58), Expect = 3.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
+ C C + +N + H RIH G+ P +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.011
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G KPY C C +Q S L +H R
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +S + H RVH GEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.45
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG KP+ C+ C L+ H R HT EK
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTG----EKPSGP 43
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + +H R+H G++P +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.6
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 346 KRVH------ECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+C+ECG F L H R H E P
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE+PY C C + S L +HL+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 30.9 bits (71), Expect = 0.049
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
SH+ +H++ H EK
Sbjct: 25 HSHLIEHLKRHFREKSSGP 43
Score = 27.5 bits (62), Expect = 0.92
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C + ++ +HL+ H ++ +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 25.9 bits (58), Expect = 3.3
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 260 RCELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
C C F L H +++H EK
Sbjct: 14 GCNECGKNFGRHSHLIEH-LKRHFREKSSGP 43
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GE+P+ C+ C L H+ ++H EK
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHL-KRHFR----EKSSGP 43
Score = 25.6 bits (57), Expect = 4.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ +R + C+ECG F L H++ H +E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.012
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + +S L H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
Score = 29.4 bits (67), Expect = 0.20
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 183 CSSHMKDHIRVHLGEKPYMC 202
S + H +H G+KP
Sbjct: 24 VRSSLTTHQAIHTGKKPSGP 43
Score = 27.9 bits (63), Expect = 0.78
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C + L++H HT +K
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTG----KKPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A ++ H IH G +P +
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 25.2 bits (56), Expect = 7.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+EC++CG F + +L H H + P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.012
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C S+L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S++ H +H GEKP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C R +L++H HT EK
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTG----EKPSGP 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + N+ H IH G++P +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G+KPY C C TQ S L +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
Score = 30.6 bits (70), Expect = 0.086
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+SH+ H +H GEKP
Sbjct: 25 NSHLARHRGIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.75
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG+KP+ C+ C + L+ H HT EK
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARH-RGIHTG----EKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +S L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33
Score = 30.6 bits (70), Expect = 0.083
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S + H H GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.094
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C R + L+ H H+ EK
Sbjct: 5 SSGTGEKPYKCNECGKAFRARSSLAIH-QATHSG----EKPSGP 43
Score = 27.5 bits (62), Expect = 0.88
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++C+ECG F +L H TH E P
Sbjct: 13 YKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.4
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A ++ H H G++P +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.6 bits (75), Expect = 0.013
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C+ C S +H R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
Score = 30.6 bits (70), Expect = 0.084
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +S H R+H G++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 27.5 bits (62), Expect = 0.92
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C + H R HT ++
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTG----QRPSGP 43
Score = 27.5 bits (62), Expect = 1.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A N + +H R+H G RP +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G KPYMC C + S L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y+C C S + H +H GEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TG KP+ C+ C L++H HT EK
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTG----EKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y+C C A ++ H IH G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.2 bits (77), Expect = 0.013
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKP 287
+K+H+E +C+ C +F K GL H M +H+ +
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 32.2 bits (72), Expect = 0.075
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 286 KPFHCHYCDYICR-TKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
C C+ + R T L H+ ++ L+ CQ C KQF + L YH H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALK----CQHCRKQFKSKAGLNYHTMAEH 78
Score = 31.5 bits (70), Expect = 0.13
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 261 CELCDLRFFDKV-GLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDK 314
C C++ + GLK H+ + C +C ++K L+ H +H+ K
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 30.7 bits (68), Expect = 0.20
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 340 QTTVHRKRVHECSECG-FTFFLEKTLRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMK 398
Q +H + C C T L+ H+ + + C C + K K L H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 399 RKHTFEDSLTTEETE 413
+H+ + S
Sbjct: 76 AEHSAKPSDAEASEG 90
Score = 27.6 bits (60), Expect = 3.0
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 319 KRYVCQLCPKQFL-TSGELKYHQTTVHR-KRVHECSECGFTFFLEKTLRAHIRETH 372
VC C T LK H + + +C C F + L H H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 26.8 bits (58), Expect = 5.2
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 171 RYVCFTCDYHSFCSSH-MKDHIRV-HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVK 226
VC TC+ + + +K H+ V + C +C + K+ L H +H K
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C +Q + L +H R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
Score = 30.2 bits (69), Expect = 0.091
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C ++H+ H RVH GEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C L H R HT EK
Sbjct: 5 SSGTGEKPYECKECGKAFSQTTHLIQH-QRVHTG----EKPSGP 43
Score = 25.5 bits (57), Expect = 4.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A ++ +H R+H G++P +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C S L +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
Score = 31.3 bits (72), Expect = 0.038
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C SSH+ H VH GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.6 bits (65), Expect = 0.41
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C C R L H H+ E+
Sbjct: 5 SSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSG----ERPSGP 43
Score = 25.9 bits (58), Expect = 3.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + ++ +H +H G+RP +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP C C KS L H R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 30.6 bits (70), Expect = 0.069
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP C C K L H R H D +K
Sbjct: 5 SSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVD----DKHSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 172 YVCFTCDYHSFC-SSHMKDHIRVHLGEKPYMC 202
C C +FC S + H R H+ +K
Sbjct: 13 CKCTECG-KAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ ++ +C+ECG F + L H R TH +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
C C A + + H R H+ D+ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 25.2 bits (56), Expect = 7.1
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 308 GRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECS 352
G T EK C C K F +L HQ T + S
Sbjct: 4 GSSGTG----EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE PY C C ++K L H +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
Score = 27.8 bits (63), Expect = 0.60
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ + +EC ECG F + L +H + TH ++
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 27.5 bits (62), Expect = 0.98
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+ H + H G+
Sbjct: 25 KDQLVSHQKTHSGQSGPSS 43
Score = 26.3 bits (59), Expect = 2.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 280 RKHTGEKPFHCHYC 293
TGE P+ C C
Sbjct: 5 SSGTGENPYECCEC 18
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + L +HLR
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
Score = 31.3 bits (72), Expect = 0.041
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C S+H+ H+RVH E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 28.6 bits (65), Expect = 0.39
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 279 MRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ C+ C L+ H R HT E
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQ----ETLSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + ++ +HLR+H + +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 36.7 bits (84), Expect = 0.017
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVHR 345
YVC +C +F T L H + HR
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHR 141
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 32.1 bits (74), Expect = 0.019
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEK Y C C ++ S L +H +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
Score = 30.2 bits (69), Expect = 0.10
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 183 CSSHMKDHIRVHLGEKPYMC 202
+S + H ++H GEKP
Sbjct: 24 RNSQLSQHQKIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.59
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEK + C+ C + LS H + HT EK
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTG----EKPSGP 43
Score = 25.6 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
C C F L H + HTGEKP
Sbjct: 15 CNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.0
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C N + +H +IH G++P +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.021
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + S L +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C +SH+ H +H GEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.26
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
TGEKP+ CH C + R L+ H HT EK
Sbjct: 5 SSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTG----EKPSGP 43
Score = 25.1 bits (56), Expect = 6.8
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHCH 291
C C F L H HTGEKP
Sbjct: 15 CHECGKVFRRNSHLARH-QLIHTGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.024
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G+KPY C C Q L +H R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 29.8 bits (68), Expect = 0.13
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 181 SFC-SSHMKDHIRVHLGEKPYMC 202
+F H+ H RVH GE+
Sbjct: 21 TFIQIGHLNQHKRVHTGERSSGP 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+G+KP+ C C L+ H R HT E+
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTG----ERSSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 339 HQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
++ K+ +EC EC TF L H R H E
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMC 81
Y C C G++ +H R+H G+R
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.5 bits (72), Expect = 0.027
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
R G KP+ C C ++ L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 30.8 bits (70), Expect = 0.052
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 279 MRKHTGEKPFHCHYCD 294
R TG KPF C CD
Sbjct: 3 TRGSTGIKPFQCPDCD 18
Score = 26.9 bits (60), Expect = 1.2
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 309 RKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTT 342
R T K + C C + F S L H+
Sbjct: 4 RGSTG----IKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 25.8 bits (57), Expect = 3.5
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 371 THRKETPFPCPFCEYKAKRKFELKSHMKR 399
PF CP C+ R L H KR
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 24.6 bits (54), Expect = 8.4
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 11/34 (32%)
Query: 69 HLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRS 102
R G +PF C C++ F RS
Sbjct: 2 STRGSTGIKPFQCPD-----------CDRSFSRS 24
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.030
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + + L +H R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
Score = 30.5 bits (70), Expect = 0.085
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+H+ +H R+H G +P
Sbjct: 25 HTHLNEHRRIHTGYRPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKP+ C C L+ H R HT +
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTG----YRPSGP 43
Score = 25.1 bits (56), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDRPFMCT 82
Y C C A + + ++ +H RIH G RP +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 31.3 bits (70), Expect = 0.034
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRKKH 223
K Y C YC +R S+LK H++ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 26.3 bits (57), Expect = 1.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 286 KPFHCHYCDYICRTKYDLSSHIGRKHTDKE 315
K + C YC++ +L +HI KH+ ++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 26.0 bits (56), Expect = 2.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 377 PFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ C +CE+++ LK+H+K KH+ E
Sbjct: 2 TYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.6 bits (81), Expect = 0.034
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 311 HTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRK 346
Y C +C + +L H + H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGL 205
Score = 31.0 bits (69), Expect = 1.0
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 323 CQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKE 375
+ T ++C C F L AH+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVA-SHGLH 206
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (72), Expect = 0.037
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GEKPF C C+ +K L H + H + EK
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAE----EKPSGP 41
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKP+ C C + KS L H +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
+ C C+ S++ H + H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.0 bits (66), Expect = 0.26
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 261 CELCDLRFFDKVGLKMHVMRKHTGEKPFHC 290
C C+ F K L +H + H EKP
Sbjct: 13 CSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41
Score = 29.0 bits (66), Expect = 0.27
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
CS C F + L H + TH +E P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.0 bits (71), Expect = 0.057
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
K Y C C T+ L +H +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 26.4 bits (59), Expect = 2.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 280 RKHTGEKPFHCHYC 293
T K ++C+ C
Sbjct: 5 SSGTDSKSYNCNEC 18
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.068
Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 83/229 (36%)
Query: 116 APRSDANFNFVCI--LCNYHIPCKWCKYCKTKLDNNTEVLLQHCK-----LCV------- 161
P S + + L +Y + K + +L + + H + + +
Sbjct: 234 IPIS---CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 162 ----NVIRPDVSYRYVCFTCDYHS--------FCSSHMKDHIRVHLGEKPYM-CIYCAYR 208
+V + + + F S ++D + + G M I
Sbjct: 291 SFFVSVRK---AITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----S 342
Query: 209 CTQKSDLKKHLRK--KH--EVKHCFVNIVMNS-------------YGTNIKKCMKRHVER 251
+ ++ ++ K H K +++V N YG N + +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLN------LTLRK 395
Query: 252 IH----LNITKT----RCELCDLRFFDKVGLKMHVMRKHTGEKPFHCHY 292
L+ ++ R RF L + PFH H
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRF-----LPVAS--------PFHSHL 431
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 30.6 bits (70), Expect = 0.074
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE PY C C +K L H R
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR 31
Score = 29.4 bits (67), Expect = 0.18
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 184 SSHMKDHIRVHLGEKPYMC 202
+ H R H GE
Sbjct: 23 KDQLISHQRTHAGESGPSS 41
Score = 27.9 bits (63), Expect = 0.60
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVC 323
+GE P+ C C K L SH R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQ-RTHAG----ESGPSS 41
Score = 27.5 bits (62), Expect = 0.82
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ECSECG F + L +H R TH E+
Sbjct: 11 YECSECGKAFNRKDQLISHQR-THAGESGPSS 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.078
Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 43/211 (20%)
Query: 24 ISSDLRDLLEHCRLCPAMTRTDLLKHKYVCYACSYATYYNGNMKKHLRIHLGDRPFMCTL 83
I SD+ ++ + + K +T ++ L++ L + +
Sbjct: 400 IKSDVMVVVNKLH-----KYSLVEKQPK------ESTISIPSIYLELKVKLENEYALHRS 448
Query: 84 LICQYCLICQYCNQYFVRSTQD------ILQHGKVCNFAPRSDA------NFNFVCI-LC 130
++ Y + + + + D I H K R +F F+ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 131 NYHIPCKWCKYCKTKLDNNTEVLLQHCKLCVNVIRP-DVSY-RYVC------FTCDYHSF 182
+ W + N LQ K I D Y R V + +
Sbjct: 509 HDSTA--WN--ASGSILN----TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 183 CSSHMKDHIRVHLGEKPYMCIYC-AYRCTQK 212
CS + D +R+ L I+ A++ Q+
Sbjct: 561 CSKYT-DLLRIAL-MAEDEAIFEEAHKQVQR 589
Score = 32.9 bits (74), Expect = 0.22
Identities = 62/474 (13%), Positives = 130/474 (27%), Gaps = 143/474 (30%)
Query: 10 IHAADIKCCHCNKYISSDLRDLL-----EHCRLCPAMTRTDLLKHKYVCYACSYATYYNG 64
I ++K C+ + + L+ LL + L H
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--------------- 228
Query: 65 NMKKHLRIHLGDRPFMCTLLICQYCLICQYCNQYFVRSTQDILQHGKVCN-FAP------ 117
+++ LR L +P+ LL+ L +Q+ K N F
Sbjct: 229 SIQAELRRLLKSKPYENCLLV----L--------------LNVQNAKAWNAFNLSCKILL 270
Query: 118 --RSDANFNFVCILCNYHIPCKWCKYCKTKLDNNTEVLLQHCKLCVNVIRPDVSYRYVCF 175
R +F+ HI T D +LL+ ++ D+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----YLDCRPQDLPRE---- 321
Query: 176 TCDYH----SFCSSHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKK------HEV 225
+ S + ++D + + ++ L + E
Sbjct: 322 VLTTNPRRLSIIAESIRDGL----------ATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 226 KHCFVNIVMNSYGTNI-------------------------KKCM-----KRHVERIHLN 255
+ F + + +I K + K I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 256 ITKTRCELCDLRFFDKVGLKMH--VMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTD 313
+ + +L + +H ++ + K F +Y SHIG H
Sbjct: 432 YLELKVKLENEY-------ALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGH-HLK 482
Query: 314 KEVLEKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTL------RAH 367
+R L FL + ++ + +K H+ + + + TL + +
Sbjct: 483 NIEHPERM--TLFRMVFL---DFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 368 IRETHRKETPFPCPFCEYKAKRKF--ELKSHMKR-KHT--FEDSLTTEETEYYK 416
I + K F +++ ++ K+T +L E+ ++
Sbjct: 534 ICDNDPKYERL---VNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 27.9 bits (61), Expect = 9.3
Identities = 42/253 (16%), Positives = 73/253 (28%), Gaps = 66/253 (26%)
Query: 186 HMKDHIRVHLGEKPYMC--IYCAYR--------CTQKSDLKKHLRKKHEVKHCFVNIVMN 235
H H+ GE Y I + C D+ K + K E+ H I+M
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIM- 56
Query: 236 SYGTNIKKCMKRHVERIHLNITKTRCELCD------LRFFDKVGLKMHVMRKHTG--EKP 287
K V L +F ++ V+R + P
Sbjct: 57 ---------SKDAVSGTLRLFWT----LLSKQEEMVQKFVEE------VLRINYKFLMSP 97
Query: 288 FHCHYCDYICRTKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSG--ELKYHQTTVHR 345
T+ + R + D +V K V +L P L EL+ + +
Sbjct: 98 IKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-- 154
Query: 346 KRVHECSECGFTFFLEKT-LRAHIRETHRKETPFPCPFCEYKAKRKFELKSHMKRKHTFE 404
+ G KT + + +++ + F L +K ++ E
Sbjct: 155 --IDGVLGSG------KTWVALDVCLSYKVQCKMDFKI--------FWLN--LKNCNSPE 196
Query: 405 DSLTTEETEYYKI 417
L + Y+I
Sbjct: 197 TVLEMLQKLLYQI 209
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.093
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLRK 221
KPY C C+Y K++L HLRK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRK 31
Score = 29.8 bits (66), Expect = 0.14
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDR 77
Y C CSYA+ N+ HLR H G++
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.8 bits (66), Expect = 0.14
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 283 TGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
+ KP+ C C Y K +L+ H+ RKHT
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHL-RKHT 33
Score = 27.5 bits (60), Expect = 0.73
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 377 PFPCPFCEYKAKRKFELKSHMKRKHTFE 404
P+ CP C Y + K L H+ RKHT E
Sbjct: 9 PYKCPQCSYASAIKANLNVHL-RKHTGE 35
Score = 26.3 bits (57), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEK 198
Y C C Y S +++ H+R H GEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (67), Expect = 0.13
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 190 HIRVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GE P+ C C TQ++ L +H R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 29.4 bits (66), Expect = 0.22
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDKE 315
GE PF C CD + + L H R H K
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQH-ERTHARKS 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 29.5 bits (67), Expect = 0.18
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G++ Y C C QK L H R
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHER 31
Score = 27.2 bits (61), Expect = 0.97
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 184 SSHMKDHIRVHLGEKPY 200
+ H R+H G P
Sbjct: 23 KGSLTLHERIHTGSGPS 39
Score = 27.2 bits (61), Expect = 1.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 280 RKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHT 312
+G++ + C C R K L+ H R HT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH-ERIHT 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.2 bits (66), Expect = 0.21
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 192 RVHLGEKPYMCIYCAYRCTQKSDLKKHLR 220
GEKPY C C + + L +H +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 26.9 bits (60), Expect = 1.4
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 172 YVCFTCDYHSFCSSHMKDHIRVHLGEKPYMC 202
Y C C ++ + H ++H +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.1 bits (58), Expect = 3.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 282 HTGEKPFHCHYC 293
+GEKP+ C C
Sbjct: 5 SSGEKPYSCAEC 16
Score = 24.6 bits (54), Expect = 9.9
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 349 HECSECGFTFFLEKTLRAHIRETHRKETPFPC 380
+ C+EC TF L H + H ++
Sbjct: 11 YSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 31.1 bits (70), Expect = 0.24
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 375 ETPFPCPFCEYKAKRKFELKSHMKRKHTF 403
PC FC+ E SH K +H F
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEHQF 41
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.2 bits (67), Expect = 0.35
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 319 KRYVCQLCPK-QFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAHIRETHRKETP 377
C C T LK H ++ + C CG ++ H+ H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 378 FP 379
P
Sbjct: 92 GP 93
Score = 29.1 bits (64), Expect = 0.71
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 171 RYVCFTCDYHSFCS-SHMKDHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVK 226
C TC + +K H+ ++ + C +C + + +K H+ H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 28.7 bits (63), Expect = 1.3
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 258 KTRCELCDLRFFDKV-GLKMHVMRKHTGEKPFHCHYCDYICRTKYDLSSHIGRKHTDK 314
C C + GLK H+ ++ ++ F CH+C R+ + H+ H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHM--ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 27.5 bits (60), Expect = 3.2
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 245 MKRHVERIHLNITKTRCELCDLRFFDKVGLKMHVMRKHTGEKPF 288
+K+H+E + C C + G+K HVM H
Sbjct: 51 LKKHMENCKQEMFT--CHHCGKQLRSLAGMKYHVMANHNSLPSG 92
Score = 26.4 bits (57), Expect = 7.7
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 286 KPFHCHYCDYICR-TKYDLSSHIGRKHTDKEVLEKRYVCQLCPKQFLTSGELKYHQTTVH 344
C C + R T L H+ + + C C KQ + +KYH H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEM------FTCHHCGKQLRSLAGMKYHVMANH 86
Score = 26.0 bits (56), Expect = 9.9
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 327 PKQFLTSGELKYHQTTVHRKRVHECSECG-FTFFLEKTLRAHIRETHRKETPFPCPFCEY 385
P + + + K C C + L+ H+ K+ F C C
Sbjct: 13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGK 70
Query: 386 KAKRKFELKSHMKRKHT 402
+ + +K H+ H
Sbjct: 71 QLRSLAGMKYHVMANHN 87
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 30.7 bits (68), Expect = 0.38
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 198 KPYMCIYCAYRCTQKSDLKKHLR-KKHEVKHCFVNIVMNSYGTNIKKCMKRHVERIHLNI 256
C C+ +S H + +KH K + + K K I
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 257 TKTR-CELCDLRFFDKVGLKMHVM-RKHT 283
+++ C +C++ F V + H + + H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIGKTHI 119
Score = 26.5 bits (57), Expect = 9.5
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 313 DKEVLEKRYVCQLCPKQFLTSGELKYH-QTTVHRKRV---HECSECGFTFFLEKTLRAHI 368
+ + C++C ++ + H Q+ H +V ++ + +K A
Sbjct: 25 ENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPA 84
Query: 369 RETHRKETPFPCPFCEYKAKRKFELKSHMK-RKHT 402
+ ++ CP C +SH + H
Sbjct: 85 EISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHI 119
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.2 bits (62), Expect = 0.41
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 194 HLGEKPYMCIYCAYRCTQKSDLKKHLR 220
G++P++C C T K++ +HL+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 26.6 bits (58), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 282 HTGEKPFHCHYCDYICRTKYDLSSHIGRKHTD 313
+G++PF C C TK + + H+ + HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL-KVHTD 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.3 bits (62), Expect = 0.48
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 372 HRKETPFPCPFCEYKAKRKFELKSHMKRKH 401
E P+ CP C + KRK + H++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 25.6 bits (55), Expect = 5.5
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 194 HLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKH 227
GEKPY C C R +K + H+R
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 38
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 27.9 bits (61), Expect = 0.64
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 321 YVCQLCPKQFLTSGELKYHQTTVH 344
YVC LC K+F++S L+ H VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.9 bits (64), Expect = 1.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 320 RYVCQLCPKQFLTSGELKYHQTT-VHRKRVHECSECGFT 357
+ C C + F+ S LK H + H+KR+ + S ++
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYS 88
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 1.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVH 344
+K Y C +C K++ L YH H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 29.1 bits (66), Expect = 2.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 128 ILCNYHIPCKWCKYCKTKLDNN 149
I+ N I C C +CK +
Sbjct: 104 IVWNRGITCGECYWCKVSKEPY 125
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 28.7 bits (65), Expect = 3.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 35 CRLCPAMT-RTDLLKHKYVCYACSYATYYNGNMKKHLRIHLGDR 77
C C + R +L ++ VC C + H+R+ +R
Sbjct: 27 CDSCGQVLYRAELERNLEVCPKCDH----------HMRMTARNR 60
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 28.8 bits (63), Expect = 3.6
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 129 LCNYHIPCKWCKYCKTKLDNNTEVLLQHCKLCVNVIRPDVSYRYVCFTCDYHSFCSSHMK 188
C + + C T +N ++L +I + C + Y C
Sbjct: 63 ACYPPLIVQPCSEVLTLTNNVNKLL---------IIDYSENRLLACGSL-YQGVCKLLRL 112
Query: 189 DHIRVHLGEKPYMCIYCAYRCTQKSDLKKHLRKKHEVKHCFVNIVMNSYGTNIKKCMKRH 248
D + + + Y + + +R + E F+ ++ R
Sbjct: 113 DDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEGEDGKLFIGTAVDGKQDYFPTLSSRK 172
Query: 249 VER 251
+ R
Sbjct: 173 LPR 175
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.9 bits (57), Expect = 3.6
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 319 KRYVCQLCPKQFLTSGELKYHQTTVHRKRVHE 350
+ Y C C ++F ++ L H R R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 36
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain;
1.98A {Staphylococcus aureus}
Length = 285
Score = 28.7 bits (65), Expect = 3.7
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 35 CRLCPAMT-RTDLLKHKYVCYACSYATYYNGNMKKHLRIHLGDR 77
C C + +L ++ VC+ C + H+ + R
Sbjct: 33 CPKCKKIMYTKELAENLNVCFNCDH----------HIALTAYKR 66
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.5 bits (55), Expect = 4.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 51 YVCYACSYATYYNGNMKKHLRIHLGDR 77
YVC C G +++H+RIH G++
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.0 bits (55), Expect = 5.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 184 SSHMKDHIRVHLGEK 198
+SH++ H+R H GE+
Sbjct: 23 TSHLRAHLRWHTGER 37
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.8 bits (56), Expect = 6.0
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 264 CDLRFFDKVGLKMHVMRKHTGEK------PFHCHY--CDYICRTKYDLSSHIGRKH 311
C L+ H+++ H + P C++ CD++ + +HI +H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQ 340
K ++C +C K+F + G LK H+
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHK 29
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV,
proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV
DMU; 1.95A {Bos taurus}
Length = 129
Score = 27.0 bits (59), Expect = 7.5
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 318 EKRYVCQLCPKQFLTSGELKYHQTTVHRKRVHECSECGFTFFLEKTLRAH 367
KR V +C + +H+ C CG + L AH
Sbjct: 85 NKRIVGCICEED-----NSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.477
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,422,707
Number of extensions: 375759
Number of successful extensions: 3314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2814
Number of HSP's successfully gapped: 1078
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.9 bits)