RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10075
         (373 letters)



>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 127 ITSHSLRKHSKGDKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKN 184
           I + S     K  KP+KC +  C   Y  +  LK H+L  HQ Q   +    ++   F  
Sbjct: 335 IDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSA 394

Query: 185 ECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
           +           +KP++C +C  + K    LK H    H
Sbjct: 395 K-----------DKPYRCEVCDKRYKNLNGLKYHRKHSH 422



 Score = 35.8 bits (82), Expect = 0.027
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 196 NEKPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
           + KP+KC +  C+ K K    LK H+L  HQ+    E                 S     
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN---------------PSPEKMN 390

Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAH 285
             + +DKP+ CE CD ++     +K H   +H
Sbjct: 391 IFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422



 Score = 32.8 bits (74), Expect = 0.33
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 20/77 (25%)

Query: 258 EDKPFTCE--HCDSKFCKKYDMKMHMSRAHYGL------------------KPFKCSFCE 297
           + KP+ C    C+ K+  +  +K HM   H                     KP++C  C+
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405

Query: 298 YKCTTKFGLKSHVTRIH 314
            +     GLK H    H
Sbjct: 406 KRYKNLNGLKYHRKHSH 422



 Score = 29.3 bits (65), Expect = 3.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 287 GLKPFKCSF--CEYKCTTKFGLKSHVTRIHSNQK 318
             KP+KC    C  K   + GLK H+   H NQK
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQK 379


>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
          Length = 79

 Score = 28.6 bits (64), Expect = 1.3
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 291 FKCSFCEYKCTTKFGLKSHVTRIHSNQKYFCGSCNFS 327
           FKC  C +   T F LK H  R H+  K  C  CN S
Sbjct: 2   FKCPICGFTTVTLFALKQHARRNHTLTK--CPVCNKS 36



 Score = 26.7 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 200 FKCTLCSYKAKRNFELKQHILRIH 223
           FKC +C +     F LKQH  R H
Sbjct: 2   FKCPICGFTTVTLFALKQHARRNH 25


>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
           Zn-finger [General function prediction only].
          Length = 493

 Score = 30.4 bits (68), Expect = 1.7
 Identities = 37/195 (18%), Positives = 56/195 (28%), Gaps = 52/195 (26%)

Query: 78  LRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK 137
           L       S C        +LKKH + +H          C      K D           
Sbjct: 149 LLSFKCPKSKCHRRCGSLKELKKHYKAQHGF------VLCSECIGNKKDFW--------- 193

Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQT---RFQCSFCDRRFYFKNECTKHYLEHH 194
                     E        L++H     + +       C FC   FY  +E  +H    H
Sbjct: 194 ---------NEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH 244

Query: 195 TNEKPFKCTLC------SYKAKRNFE-LKQHILRIHQDNIEAEYHCTYCD------YICS 241
                  C +C       Y+  +++E L+ H    H       Y CT+        Y+  
Sbjct: 245 E-----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH-------YCCTFQTCRVGKCYVFP 292

Query: 242 SRTILKSHINKKHAN 256
             T L  H+ + H  
Sbjct: 293 YHTELLEHLTRFHKV 307


>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain.  MAN1 is an integral
           protein of the inner nuclear membrane which binds to
           chromatin associated proteins and plays a role in
           nuclear organisation. The C terminal nucleoplasmic
           region forms a DNA binding winged helix and binds to
           Smad. This C-terminal tail is also found in S.
           cerevisiae and is thought to consist of three conserved
           helices followed by two downstream strands.
          Length = 326

 Score = 30.1 bits (68), Expect = 1.8
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 11/132 (8%)

Query: 10  HSRECAFVSRLDDSYNFICILCNYHAENFENIYLH-------LPSHFEQKLFSCDLCEYQ 62
            +   A      +     CI C  +A  +  + L         P            C   
Sbjct: 29  PTYSLALTPSFLERLKPQCIPCPPNAICYPGLKLKCEPGFKLKPHPLSLLGLIPPKCIPD 88

Query: 63  TNTKIYIRRHMLKIH--LRQRN--LECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCD 118
           T  +  +   + K    LR+RN   EC   D +   + +    +  +  +       F D
Sbjct: 89  TEKEELVSELVDKALEELRKRNAKHECGEDDLSPGISENELYELLSEKKSPWINEEEFED 148

Query: 119 YKSKTKYDITSH 130
                  ++  +
Sbjct: 149 LWKAAIKELKEN 160


>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 26.2 bits (58), Expect = 2.5
 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 97  DLKKHIQRKHTNDRPFSCNFCDYKSKT 123
           +L++H+ R HT ++P+ C  C     +
Sbjct: 1   NLRRHM-RTHTGEKPYKCPVCGKSFSS 26


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,485,501
Number of extensions: 1549207
Number of successful extensions: 1880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1856
Number of HSP's successfully gapped: 101
Length of query: 373
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 275
Effective length of database: 6,590,910
Effective search space: 1812500250
Effective search space used: 1812500250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)