RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10075
(373 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 68.0 bits (167), Expect = 5e-14
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 84 ECSLCDSTFSDNMDLKKHI--QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---G 138
C F L HI + H + F C++ + + + L H + G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 139 DKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYFKNECTKHYLEHH 194
+KPHKCT C +Y LK H+ + H G+ + C C + F ++ KH H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 195 TNEKPFKCTL--CSYKAKRNFELKQHILRIH 223
+NEKP+ C L C+ + L++H+ +
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHV-KTV 153
Score = 60.7 bits (148), Expect = 2e-11
Identities = 43/190 (22%), Positives = 63/190 (33%), Gaps = 51/190 (26%)
Query: 140 KPHKCTICESTYLTKVELKNHILK--IHQGQTRFQCSFCDRRFYFKNECTKHYLEH---- 193
+ C + ++ +L +HI IH + F C + + ++ L
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 194 HTNEKPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHIN 251
HT EKP KCT C R LK H+ R H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHL-RSHTG-------------------------- 94
Query: 252 KKHANDEDKPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKF----G 305
+KP+ CEH C F D H +R H KP+ C CT ++
Sbjct: 95 -------EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG--CTKRYTDPSS 145
Query: 306 LKSHVTRIHS 315
L+ HV +
Sbjct: 146 LRKHV-KTVH 154
Score = 56.8 bits (138), Expect = 4e-10
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 197 EKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRT-----ILKSHIN 251
E + CS + +L HI H E+ C + R +L H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM- 59
Query: 252 KKHANDEDKPFTC--EHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFG---- 305
++H + KP C E C + + ++K H+ R+H G KP+ C C+ F
Sbjct: 60 RRHTGE--KPHKCTFEGCRKSYSRLENLKTHL-RSHTGEKPYMCE--HEGCSKAFSNASD 114
Query: 306 LKSHVTRIHSNQK-YFCGS--CNFSCTSNTDLLEHVQT 340
H R HSN+K Y C C T + L +HV+T
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 56.1 bits (136), Expect = 8e-10
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKK-----YDMKMHMSRAH 285
C S+ L HIN +H + E K F C + Y + +HM R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRH 62
Query: 286 YGLKPFKCSFCEYKCTTKF----GLKSHVTRIHSNQK-YFC--GSCNFSCTSNTDLLEHV 338
G KP KC+F C + LK+H+ R H+ +K Y C C+ + ++ +D +H
Sbjct: 63 TGEKPHKCTFEG--CRKSYSRLENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 339 QTNH 342
H
Sbjct: 120 NRTH 123
Score = 37.6 bits (88), Expect = 0.002
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 59 CEYQTNTKIYIRRHMLKIHLR----QRNLEC--SLCDSTFSDNMDLKKHIQRKHTNDRPF 112
C ++ K Y R LK HLR ++ C C FS+ D KH R H+N++P+
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY 129
Query: 113 SCNF--CDYKSKTKYDITSHSLRKHSK 137
C C K T SLRKH K
Sbjct: 130 VCKLPGCT-KRYTD----PSSLRKHVK 151
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 63.7 bits (156), Expect = 7e-13
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
+ +C C K + LK H R H E + C C + L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHTG--EKPFECPKCGKCYFRKENLLEHEARN 58
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRI 313
N ++ FTC C F ++ ++++HM +H G P+KCS C + K L+SH+ ++
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Query: 314 HSNQK 318
HS
Sbjct: 118 HSGPS 122
Score = 58.7 bits (143), Expect = 5e-11
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 106 HTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNH--ILK 163
+ C C K +KY + H RKH+ G+KP +C C Y K L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHT-GEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+++ + F CS C F + E H + HT E P+KC+ CS + + +L+ H++++H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 57.9 bits (141), Expect = 1e-10
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK------ 137
EC C F LK H RKHT ++PF C C K +L +H
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCG-----KCYFRKENLLEHEARNCMNR 62
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNE 197
++ C++C+ T+ ++EL+ H + H G+ ++CS C ++F K + H ++ H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Query: 198 K 198
Sbjct: 122 S 122
Score = 52.9 bits (128), Expect = 5e-09
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 37/154 (24%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKH--YLEHHT 195
G +C C +L+K LK H + H G+ F+C C + ++ K +H +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 196 NEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKHA 255
+E+ F C++C +R EL+ H + H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLH-MVSHTG------------------------------ 91
Query: 256 NDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLK 289
+ P+ C C +F +K D++ HM + H G
Sbjct: 92 ---EMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 46.7 bits (112), Expect = 7e-07
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 52 KLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRK---HTN 108
C C + +K Y++ H + H ++ EC C + +L +H + + + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRS 63
Query: 109 DRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCTICESTYLTKVELKNHILKIH 165
++ F+C+ C + LR H G+ P+KC+ C ++ K +L++H++K+H
Sbjct: 64 EQVFTCSVCQ-----ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 166 QG 167
G
Sbjct: 119 SG 120
Score = 44.0 bits (105), Expect = 6e-06
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSH--VTRIHSNQ 317
C C KF KY +K+H R H G KPF+C C K L H ++ ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 318 K-YFCGSCNFSCTSNTDLLEH 337
+ + C C + +L H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH 85
Score = 30.9 bits (71), Expect = 0.23
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 284 AHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSCNFSCTSNTDLLEHVQTNH 342
G +C C K +K+ LK H R H+ +K + C C +LLEH N
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 343 IIVGE 347
+ E
Sbjct: 60 MNRSE 64
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 61.1 bits (149), Expect = 1e-11
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 76 IHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKS---------KTKYD 126
I Q + CD TFS +L H P N Y K KY
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 127 ITSHSLRKHSKGDKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYF 182
+ +H +R H+ G+KP C C + LK H + H G+ F+C F CDRRF
Sbjct: 78 LVNH-IRVHT-GEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFAN 134
Query: 183 KNECTKHYLEHHTNEKPFKCT 203
++ KH + HT++K +
Sbjct: 135 SSDRKKH-MHVHTSDKSGPSS 154
Score = 51.5 bits (124), Expect = 3e-08
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH-------QDNIEAEYHCTYCDYICSSRTIL 246
+ C EL H+ + +++ C ++ L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 247 KSHINKKHANDEDKPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKF 304
+HI + H +KPF C C F + ++K+H R H G KPFKC F C +F
Sbjct: 79 VNHI-RVHTG--EKPFPCPFPGCGKIFARSENLKIHK-RTHTGEKPFKCEFEG--CDRRF 132
Query: 305 GLKSHVT---RIHSNQK-YFC 321
S +H++ K
Sbjct: 133 ANSSDRKKHMHVHTSDKSGPS 153
Score = 49.6 bits (119), Expect = 2e-07
Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKA---------KRNFE 214
I + Q CDR F +E H + P + Y K ++
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 215 LKQHILRIHQDNIEAEYHCTY--CDYICSSRTILKSHINKKHANDEDKPFTCEH--CDSK 270
L HI R+H E + C + C I + LK H + H + KPF CE CD +
Sbjct: 78 LVNHI-RVHTG--EKPFPCPFPGCGKIFARSENLKIHK-RTHTGE--KPFKCEFEGCDRR 131
Query: 271 FCKKYDMKMHMSRAHYGLKPFKCS 294
F D K HM H K S
Sbjct: 132 FANSSDRKKHM-HVHTSDKSGPSS 154
Score = 38.4 bits (90), Expect = 9e-04
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 241 SSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEY-- 298
SS +K ++ K ++ + CD F +++ H+ + P + + Y
Sbjct: 5 SSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYWE 63
Query: 299 ---KCTTKFGLKSHVT---RIHSNQK-YFC--GSCN--FSCTSN 331
+ F K + R+H+ +K + C C F+ + N
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN 107
Score = 36.5 bits (85), Expect = 0.005
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 59 CEYQTNTKIYIRRHMLKIHLR----QRNLECSL--CDSTFSDNMDLKKHIQRKHTNDRPF 112
C + KI+ R LKIH R ++ +C CD F+++ D KKH HT+D+
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH-MHVHTSDKSG 151
Query: 113 SCN 115
+
Sbjct: 152 PSS 154
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 59.8 bits (146), Expect = 9e-11
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 13/193 (6%)
Query: 129 SHSLRKHSK---GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNE 185
S S + G+KP+ C C ++ L H + H G+ ++C C + F K +
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKD 64
Query: 186 CTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTI 245
T+H HT EKP+KC C + L+ H R H E Y C C S
Sbjct: 65 LTRH-QRTHTGEKPYKCPECGKSFSQRANLRAH-QRTH--TGEKPYACPECGKSFSQLAH 120
Query: 246 LKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFG 305
L++H + H +KP+ C C F ++ ++ H R H G KP+KC C + +
Sbjct: 121 LRAH-QRTHT--GEKPYKCPECGKSFSREDNLHTHQ-RTHTGEKPYKCPECGKSFSRRDA 176
Query: 306 LKSHVTRIHSNQK 318
L H R H+ +K
Sbjct: 177 LNVH-QRTHTGKK 188
Score = 59.0 bits (144), Expect = 1e-10
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDK 140
C C +FS + L +H QR HT ++P+ C C KS + L +H + G+K
Sbjct: 23 ACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECG-KSFSD----KKDLTRHQRTHTGEK 76
Query: 141 PHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPF 200
P+KC C ++ + L+ H + H G+ + C C + F H HT EKP+
Sbjct: 77 PYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQ-RTHTGEKPY 134
Query: 201 KCTLCSYKAKRNFELKQHILRIH 223
KC C R L H R H
Sbjct: 135 KCPECGKSFSREDNLHTH-QRTH 156
Score = 57.8 bits (141), Expect = 3e-10
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDK 140
+C C +FSD DL +H QR HT ++P+ C C KS ++ +LR H + G+K
Sbjct: 51 KCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECG-KSFSQ----RANLRAHQRTHTGEK 104
Query: 141 PHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPF 200
P+ C C ++ L+ H + H G+ ++C C + F ++ H HT EKP+
Sbjct: 105 PYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPY 162
Query: 201 KCTLCSYKAKRNFELKQHILRIH 223
KC C R L H R H
Sbjct: 163 KCPECGKSFSRRDALNVH-QRTH 184
Score = 51.3 bits (124), Expect = 6e-08
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
EKP+ C C R+ L +H R H E Y C C S + L H +
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEH-QRTHTG--EKPYKCPECGKSFSDKKDLTRH-QRT 71
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRI 313
H +KP+ C C F ++ +++ H R H G KP+ C C + L++H R
Sbjct: 72 HTG--EKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAH-QRT 127
Query: 314 HSNQK-YFCGSCNFSCTSNTDLLEH 337
H+ +K Y C C S + +L H
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTH 152
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 54.1 bits (131), Expect = 7e-10
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYG--LKPFKCSFCEYKCTTKFGLKSHVTRIHSNQ 317
KP+ C C ++F + MKMH+ + + F C C+ K L H+ + HS
Sbjct: 14 KPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 318 KYFCG 322
G
Sbjct: 73 GPSSG 77
Score = 50.6 bits (122), Expect = 1e-08
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 215 LKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKK 274
R H E Y C C + +K HI + + F C HCD+ +K
Sbjct: 3 SGSS-GRTHSG--EKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARK 58
Query: 275 YDMKMHMSRAHYGLKPF 291
D+ +H+ + H P
Sbjct: 59 SDLGVHLRKQHSYSGPS 75
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 98 LKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVEL 157
R H+ ++P+ C C + + H L+KH++ C C++ K +L
Sbjct: 3 SGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 158 KNHILKIHQG 167
H+ K H
Sbjct: 62 GVHLRKQHSY 71
Score = 46.0 bits (110), Expect = 5e-07
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 131 SLRKHSK---GDKPHKCTICESTYLTKVELKNHILKIHQGQTR--FQCSFCDRRFYFKNE 185
S + G+KP++C IC + + +K HI + F C CD K++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSD 60
Query: 186 CTKHYLEHHTNEKPF 200
H + H+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 42.1 bits (100), Expect = 1e-05
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 157 LKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHT-NEKPFKCTLCSYKAKRNFEL 215
+ + H G+ ++C C RF H L+ HT N F C C R +L
Sbjct: 3 SGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 216 KQHILRIH 223
H+ + H
Sbjct: 62 GVHLRKQH 69
Score = 40.2 bits (95), Expect = 5e-05
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 278 KMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIH---SNQKYFCGSCNFSCTSNTDL 334
R H G KP++C C + T +K H+ + K+ C C+ +DL
Sbjct: 4 GSSG-RTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 335 LEHVQTNH 342
H++ H
Sbjct: 62 GVHLRKQH 69
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 54 FSCDLCEYQTNTKIYIRRHMLKIHLRQRNLE------CSLCDSTFSDNMDLKKHIQRKHT 107
+ C +C + + +K+H+ Q++ E C CD+ + DL H++++H+
Sbjct: 16 YECYICH-----ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 108 NDRPFS 113
P S
Sbjct: 71 YSGPSS 76
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 55.7 bits (135), Expect = 2e-09
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 20/192 (10%)
Query: 163 KIHQGQTRFQCSF--CDRRFYFKNECTKHYLEHHTNEKPFKCT--LCSYKAKRNFELKQH 218
+ R+ CSF C + + H L HT EKPF C C L +H
Sbjct: 5 ALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Query: 219 ILRIHQDNIEAEYHCT--YCDYICSSRTILKSHINKKHANDEDKPFTC--EHCDSKFCKK 274
H E + C CD +++ +K H + N + + C E+C F K
Sbjct: 64 S-LTHTG--EKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYVCHFENCGKAFKKH 119
Query: 275 YDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGSCNFSCTS 330
+K+H +H P++C C +F L S + ++H+ SC+F +
Sbjct: 120 NQLKVHQ-FSHTQQLPYECP--HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 176
Query: 331 NTDLLEHVQTNH 342
T L+HV H
Sbjct: 177 WTLYLKHVAECH 188
Score = 52.6 bits (127), Expect = 2e-08
Identities = 47/193 (24%), Positives = 67/193 (34%), Gaps = 20/193 (10%)
Query: 133 RKHSKGDKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCS--FCDRRFYFKNECTK 188
K + C+ C + Y +L+ H L H G+ F C C++ F + T+
Sbjct: 5 ALPV-VYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 189 HYLEHHTNEKPFKCT--LCSYKAKRNFELKQHILRIHQDNIEAEYHCTY--CDYICSSRT 244
H L HT EK F C C + +K+H + Y C + C
Sbjct: 63 HSL-THTGEKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 245 ILKSHINKKHANDEDKPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTT 302
LK H H P+ C H CD +F +K H + H G K C
Sbjct: 121 QLKVHQ-FSHTQQ--LPYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCS-FVGK 175
Query: 303 KF-GLKSHVTRIH 314
+ HV H
Sbjct: 176 TWTLYLKHVAECH 188
Score = 51.8 bits (125), Expect = 4e-08
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Query: 66 KIYIRRHMLKIHLR----QRNLECS--LCDSTFSDNMDLKKHIQRKHTNDRPFSCN--FC 117
Y + L+ HL ++ C C+ F+ L +H HT ++ F+C+ C
Sbjct: 22 AAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGC 80
Query: 118 DYKSKTKYDITSHSLRKHSKGDKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCS- 174
D + TK ++ H R H+ + C C + +LK H H Q ++C
Sbjct: 81 DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPH 139
Query: 175 -FCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQD 225
CD+RF + +H + H K CS+ K +H+ HQD
Sbjct: 140 EGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 51.6 bits (124), Expect = 5e-09
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIH---QGQTRFQCSFCDRRFYFKNECTKHYLEHH 194
G +C IC T K L H + H RF C FC +RF + H + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 195 TNEKPFKCTLCS 206
Sbjct: 63 PALLLAPQESSG 74
Score = 50.9 bits (122), Expect = 8e-09
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAH---YGLKPFKCSFCEYKCTTKFGLKSHVTRIHSN 316
CE C +K + H R H F C FC + + +H ++ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 317 QKYFCGSC 324
Sbjct: 65 LLLAPQES 72
Score = 49.7 bits (119), Expect = 2e-08
Identities = 16/66 (24%), Positives = 22/66 (33%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKP 290
C C + C + L H K F CE C +F K + H S++H L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 291 FKCSFC 296
Sbjct: 68 APQESS 73
Score = 45.9 bits (109), Expect = 5e-07
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 106 HTNDRPFSCNFCDYKSKTKYDITSHSLRKHS--KGDKPHKCTICESTYLTKVELKNHILK 163
+ C C + + K + H RKH+ C C + + H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 164 IHQGQTRFQCSFC 176
H
Sbjct: 61 SHPALLLAPQESS 73
Score = 38.5 bits (90), Expect = 2e-04
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 285 HYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK----YFCGSCNFSCTSNTDLLEHVQT 340
G +C C + C K L H R H+ + C C + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 341 NH 342
+H
Sbjct: 61 SH 62
Score = 38.5 bits (90), Expect = 2e-04
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 165 HQGQTRFQCSFCDRRFYFKNECTKHYLEH--HTNEKPFKCTLCSYKAKRNFELKQHILRI 222
G + QC C K H +H F C C + ++ + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 223 HQD 225
H
Sbjct: 62 HPA 64
Score = 37.8 bits (88), Expect = 4e-04
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 4/69 (5%)
Query: 52 KLFSCDLCEYQTNTKIYIRRHMLKIHLRQ---RNLECSLCDSTFSDNMDLKKHIQRKHTN 108
C++C + K + H + H C C F + H + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 109 DRPFSCNFC 117
Sbjct: 65 LLLAPQESS 73
Score = 25.8 bits (57), Expect = 6.5
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 52 KLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLCDSTF 92
F C+ C + + H K H +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 49.2 bits (118), Expect = 6e-08
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 136 SKGDKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYFKNECTKHYL 191
+ + H C C Y LK H L+ H G+ ++C++ CD RF +E T+HY
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHY- 67
Query: 192 EHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQD 225
HT KPF+C +C+ R+ L H+ + HQ+
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHM-KRHQN 100
Score = 41.8 bits (99), Expect = 2e-05
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 59 CEYQTNTKIYIRRHMLKIHLR----QRNLECSL--CDSTFSDNMDLKKHIQRKHTNDRPF 112
C+Y TK+Y + LK HLR ++ +C+ CD F+ + +L +H RKHT +PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPF 76
Query: 113 SCNFCDYKSKTKYDITSHSLRKHSK 137
C C+ + S L H K
Sbjct: 77 QCGVCN-----RSFSRSDHLALHMK 96
Score = 34.9 bits (81), Expect = 0.007
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 259 DKPFTC--EHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSN 316
+KP+ C E CD +F + ++ H R H G KPF+C C + L H+ + H N
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHM-KRHQN 100
Score = 29.1 bits (66), Expect = 0.65
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 36/92 (39%)
Query: 194 HTNEKPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHIN 251
HT EKP+KCT C ++ R+ EL +H R H
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRH-YRKHTG-------------------------- 72
Query: 252 KKHANDEDKPFTCEHCDSKFCKKYDMKMHMSR 283
KPF C C+ F + + +HM R
Sbjct: 73 -------AKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 27.2 bits (61), Expect = 2.9
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 70 RRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTN 108
RH + H + +C +C+ +FS + L H ++H N
Sbjct: 64 TRHY-RKHTGAKPFQCGVCNRSFSRSDHLALH-MKRHQN 100
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 49.0 bits (118), Expect = 6e-08
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
+ P KC +C R +LK H+ R H Y C CDY + + L H+ +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTG--VKPYKCKTCDYAAADSSSLNKHL-RI 58
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKC 293
H+ +++PF C+ C + +H+ R+H G
Sbjct: 59 HS--DERPFKCQICPYASRNSSQLTVHL-RSHTGDSGPSS 95
Score = 44.3 bits (106), Expect = 3e-06
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNE 197
PHKC +C + K +LK H+ + H G ++C CD + KH L H++E
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDE 62
Query: 198 KPFKCTLCSYKAKRNFELKQHILRIH 223
+PFKC +C Y ++ + +L H LR H
Sbjct: 63 RPFKCQICPYASRNSSQLTVH-LRSH 87
Score = 44.0 bits (105), Expect = 4e-06
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 47 SHFEQKLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKH 106
S C++C + K ++ HM + H + +C CD +D+ L KH R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKH-LRIH 59
Query: 107 TNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
+++RPF C C Y S+ +T H LR H+ GD
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVH-LRSHT-GDSGPSS 95
Score = 42.4 bits (101), Expect = 1e-05
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK- 318
P CE C F +K +K HM R H G+KP+KC C+Y L H+ RIHS+++
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERP 64
Query: 319 YFCGSCN--FSCTSN 331
+ C C +S
Sbjct: 65 FKCQICPYASRNSSQ 79
Score = 25.8 bits (58), Expect = 8.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 285 HYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSCNFSCTSNTDLLEH 337
P KC C + K LK+H R H+ K Y C +C+++ ++ L +H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKH 55
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 49.1 bits (118), Expect = 9e-08
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 195 TNEKPFKCT--LCSYKAKRNFELKQHILRIHQDNIEAEYHCTY--CDYICSSRTILKSHI 250
+ ++PF C C+ + + L+ H R H E Y C + C+ S LK H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS-RKHTG--EKPYQCDFKDCERRFSRSDQLKRHQ 58
Query: 251 NKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHV 310
++H KPF C+ C KF + +K H R H G KPF C + C KF +
Sbjct: 59 -RRHTGV--KPFQCKTCQRKFSRSDHLKTHT-RTHTGEKPFSCRWPS--CQKKFARSDEL 112
Query: 311 T---RIH 314
+H
Sbjct: 113 VRHHNMH 119
Score = 42.9 bits (102), Expect = 2e-05
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 34/138 (24%)
Query: 88 CDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTIC 147
C+ + L+ H RKHT ++P+ C+F D C
Sbjct: 14 CNKRYFKLSHLQMH-SRKHTGEKPYQCDFKD----------------------------C 44
Query: 148 ESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTL--C 205
E + +LK H + H G FQC C R+F + H HT EKPF C C
Sbjct: 45 ERRFSRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSC 102
Query: 206 SYKAKRNFELKQHILRIH 223
K R+ EL +H +H
Sbjct: 103 QKKFARSDELVRHH-NMH 119
Score = 42.5 bits (101), Expect = 2e-05
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 138 GDKPHKCT--ICESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYFKNECTKHYLEH 193
+P C C Y L+ H + H G+ +QC F C+RRF ++ +H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRR 60
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
HT KPF+C C K R+ LK H R H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHT-RTH 89
Score = 41.4 bits (98), Expect = 5e-05
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 59 CEYQTNTKIYIRRHMLKIHLR----QRNLECSL--CDSTFSDNMDLKKHIQRKHTNDRPF 112
C Y K Y + L++H R ++ +C C+ FS + LK+H QR+HT +PF
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPF 67
Query: 113 SCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCTICE 148
C C + S L+ H++ G+KP C
Sbjct: 68 QCKTCQ-----RKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.7 bits (115), Expect = 1e-07
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 134 KHSKGDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEH 193
+ + ++C +C + + +E +H + C +C RF+ +H E
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHE---RLCRNAAVCPYCSLRFFSPELKQEH--ES 63
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEA 229
K C C K +F + +H + +H N A
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMA 99
Score = 40.3 bits (93), Expect = 9e-05
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 51 QKLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDR 110
++++ C LC + ++ + H L + C C F ++H +
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHE---RLCRNAAVCPYCSLRFFSPELKQEH--ESKCEYK 68
Query: 111 PFSCNFCDYKSKTKYDITSHSLRKHSK 137
+C C K+ + I H + H++
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 39.5 bits (91), Expect = 2e-04
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 228 EAEYHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYG 287
+ Y C C+ SS SH C +C +F + H +
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNA-----AVCPYCSLRFFSPELKQEH--ESKCE 66
Query: 288 LKPFKCSFCEYKCTTKFGLKSHVTRIHSNQ 317
K C C + F + H +H+
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 38.3 bits (88), Expect = 4e-04
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 196 NEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKHA 255
N++ ++C LC+ K E H R+ ++ C YC S + + H +K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSH-ERLCRNAAV----CPYCSLRFFSPELKQEHESKC-- 65
Query: 256 NDEDKPFTCEHCDSKFCKKYDMKMHMSRAH 285
E K TC C F + + H H
Sbjct: 66 --EYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 34.9 bits (79), Expect = 0.008
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 252 KKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT 311
+ + + C C++K + H C +C + + + H +
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHES 63
Query: 312 RIHSNQKYFCGSCNFSCTSNTDLLEHVQTNH 342
+ +K C C + S+ + H H
Sbjct: 64 K-CEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 31.0 bits (69), Expect = 0.21
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 26 FICILCNYHAENFENIYLHLPSHFEQKLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLEC 85
+ C LCN + H + C C + + + H + + L C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH--ESKCEYKKLTC 72
Query: 86 SLCDSTFSDNMDLKKHIQRKHTND 109
C TF + + +H H +
Sbjct: 73 LECMRTFKSSFSIWRHQVEVHNQN 96
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 259 DKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
P C C K +++H R H +PFKC++C + L H+ +
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGDM 64
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 104 RKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNHILK 163
++ P C+ C Y +K + H R H D+P KC C L H +K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-ERIHC-TDRPFKCNYCSFDTKQPSNLSKH-MK 58
Query: 164 IHQGQTRFQCS 174
G S
Sbjct: 59 KFHGDMSGPSS 69
Score = 44.4 bits (106), Expect = 1e-06
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHK 143
+CS C + S L+ H +R H DRPF CN+C + +K +++ H ++K GD
Sbjct: 11 KCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFH-GDMSGP 67
Query: 144 CT 145
+
Sbjct: 68 SS 69
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 165 HQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+CS C K H H ++PFKC CS+ K+ L +H ++
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 40.2 bits (95), Expect = 5e-05
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSCNFSCTSNTDLLEHVQT 340
+ P KCS C Y C++K L+ H RIH + + C C+F ++L +H++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 39.4 bits (93), Expect = 9e-05
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 133 RKHSKGDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLE 192
S P KC+ C + +K L+ H +IH F+C++C + +KH ++
Sbjct: 2 SSGS-SGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKH-MK 58
Query: 193 HHTNEKPFKCT 203
+ +
Sbjct: 59 KFHGDMSGPSS 69
Score = 37.9 bits (89), Expect = 3e-04
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 47 SHFEQKLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKH 106
S C C Y ++K +R H +IH R +C+ C +L KH +K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Query: 107 TNDRPFSC 114
D
Sbjct: 61 HGDMSGPS 68
Score = 35.6 bits (83), Expect = 0.002
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKP 290
C+ C Y CSS+ L+ H + H D+PF C +C + ++ HM + +G
Sbjct: 10 EKCSECSYSCSSKAALRIHE-RIHCT--DRPFKCNYCSFDTKQPSNLSKHM-KKFHGDMS 65
Query: 291 FKCS 294
S
Sbjct: 66 GPSS 69
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 48.6 bits (115), Expect = 2e-07
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
T F+C CS EL H + + + + S+ +S + +
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVH-MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHM-SRAHYGLKPFKCS 294
D K C +C F D+ +HM HY S
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 43.2 bits (101), Expect = 1e-05
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLE-HHTNEKPFKCTLCSYKAKRNFELKQHILR 221
I G ++F+C C + E T H E H + + + K + +
Sbjct: 12 SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 222 IHQDNIEAEYHCTYCDYICSSRTILKSHINKKH 254
+++ + C YC + S L H+ K
Sbjct: 72 EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 41.3 bits (96), Expect = 5e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHM-SRAHY---GLKPFKCSFCEYKCTTKFGLKSHVTRIHS 315
F C+ C + + ++ +HM HY + + + K L + +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 316 NQKYFCGSCNFSCTSNTDLLEH-VQTNH 342
+ C C S S DL H ++T H
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 40.1 bits (93), Expect = 1e-04
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 93 SDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYL 152
S K + T F C C T ++T H D H+
Sbjct: 2 SSGSSGKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 153 TKVELKNHIL--KIHQGQTRFQCSFCDRRFYFKNECTKHYL-EHHTNEKPFK 201
+K ++ + Q +C +C F + + H + H +
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 38.2 bits (88), Expect = 6e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQR-KHTNDRPFSCNFCDYKSKTKYDITS-HSL 132
I C C + + ++L H+ H D + + K +K S +
Sbjct: 12 SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 133 RKHSKGDKPHKCTICESTYLTKVELKNHILKIHQGQ 168
K KC C ++ + +L H++K Q
Sbjct: 72 EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ 107
Score = 35.1 bits (80), Expect = 0.008
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 137 KGDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEH--- 193
G +C C + Y T VEL H+ + + + + + + LE
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+K KC C + + +L H+++
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.1 bits (80), Expect = 0.008
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 5/108 (4%)
Query: 40 NIYLHLPSHFEQKLFSCDLCEYQTNTKIYIRRHMLKI-HLRQRNLECSLC---DSTFSDN 95
+ L+ F C C +T + + HM + H R N E +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 96 MDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHK 143
L + + K + C +C + ++ D++ H ++
Sbjct: 66 RSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 30.1 bits (67), Expect = 0.42
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 228 EAEYHCTYCDYICSSRTILKSHINKKH--ANDEDKPFTCEHCDSKFCKKYDMKMHMSRAH 285
+++ C C + L H+N+ +D + +K + + M
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL-LEMEGKE 75
Query: 286 YGLKPFKCSFCEYKCTTKFGLKSHVTRIH 314
K KC +C + + L H+ +
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 28.2 bits (62), Expect = 2.0
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 26 FICILCNYHAENFENIYLHLPS--HFEQKLFSCDLCEYQTNTKIYIRRHML--KIHLRQR 81
F C C+ + + +H+ H+ D + +K R + Q+
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 82 NLECSLCDSTFSDNMDLKKH-IQRKHTNDRPF 112
L+C C +F DL H I+ KH
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 27.4 bits (60), Expect = 3.3
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 275 YDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHV-----TRIHSNQKYFCGSCNFSCT 329
K++ G F+C C T L H+ R +++ +S
Sbjct: 5 SSGKLYG-SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
Query: 330 SNTDLLEHVQTNH 342
LLE
Sbjct: 64 RKRSLLEMEGKED 76
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 48.0 bits (114), Expect = 2e-07
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 76 IHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYK--------SKTKYDI 127
I Q + CD TFS +L H+ +H + + C ++ K KY +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 128 TSHSLRKHSKGDKPHKCT 145
+H +R H+ G+K +
Sbjct: 79 VNH-IRVHT-GEKSGPSS 94
Score = 40.7 bits (95), Expect = 6e-05
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRR---FYFKNECTKHYLEHH 194
C+ T+ T EL H+ H G C K+ K+ L +H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 195 ----TNEKPFKCT 203
T EK +
Sbjct: 82 IRVHTGEKSGPSS 94
Score = 35.7 bits (82), Expect = 0.003
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 241 SSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYK- 299
SS +K ++ K ++ + CD F +++ H++ H G C ++
Sbjct: 5 SSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE 64
Query: 300 -------CTTKFGLKSHVTRIHSNQK-YFC 321
K+ L +H+ R+H+ +K
Sbjct: 65 CPREGKSFKAKYKLVNHI-RVHTGEKSGPS 93
Score = 34.9 bits (80), Expect = 0.005
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 48 HFEQKLFSCDLCEYQTNTKIYIRRHMLKIHLRQRN--------LECSLCDSTFSDNMDLK 99
Q C+ +T + H+ H+ EC +F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 100 KHIQRKHTNDRPFSC 114
HI R HT ++
Sbjct: 80 NHI-RVHTGEKSGPS 93
Score = 29.9 bits (67), Expect = 0.40
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 26/101 (25%)
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
I + Q CDR F +E H H +C ++
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE--------------- 63
Query: 224 QDNIEAEYHCTYCDYICSSRTILKSHINKKHANDEDKPFTC 264
C ++ L +HI + H +K
Sbjct: 64 --------ECPREGKSFKAKYKLVNHI-RVHTG--EKSGPS 93
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYL-EHHTNEKPFKCTLCSYKAKRNFELKQHILRI 222
+G+ ++C C R + + +HY+ H N K + C C + R + H+ +I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KI 62
Query: 223 H 223
Sbjct: 63 I 63
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 259 DKPFTCEHCDSKFCKKYDMKMHM-SRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIH 314
+ + C+ C + + H + +K + C FC + T K + +HV +I
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KII 63
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 102 IQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNHI 161
++ + + C C + H + H + K + C C + K + H+
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 162 LKIHQG 167
KI
Sbjct: 61 -KIIHK 65
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 33/95 (34%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
E ++C +CS +H T K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHY-----------------------VTSHKR----- 36
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGL 288
K + C C +F +K +M H+ + + +
Sbjct: 37 ----NVKVYPCPFCFKEFTRKDNMTAHV-KIIHKI 66
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQ-RKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK 137
C +C ++ + +H N + + C FC + K ++T+H ++ K
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH-VKIIHK 65
Score = 34.1 bits (79), Expect = 0.007
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKI-HQGQTRFQCSFCDRRFYFKNECTKHYLEHH 194
G+ ++C +C Y H + + + C FC + F K+ T H H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 31.8 bits (73), Expect = 0.044
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 281 MSRAHYGLKPFKCSFCEYKCTTKFGLKSHV-TRIHSNQK-YFCGSCNFSCTSNTDLLEHV 338
M G ++C C T H T N K Y C C T ++ HV
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 339 QTNH 342
+ H
Sbjct: 61 KIIH 64
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 44.8 bits (107), Expect = 2e-06
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQKY 319
KPF C C F + + H+ R H G KPF C C K K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPI 59
Query: 320 FCGSCNFSCTSNTDLLEHVQTNHIIVGE 347
+ N L V +VGE
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGE 87
Score = 42.9 bits (102), Expect = 8e-06
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 140 KPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKP 199
KP +C IC + L HI + H G+ F C C R+F +E +H H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILP 58
Query: 200 FKCTLCSYKAKRNFELKQHI--LRIH 223
+N+ L+ + L+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKL 84
Score = 42.5 bits (101), Expect = 1e-05
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK--GDKP 141
+C +C FS + L H R HT ++PF+C+ C + S ++H P
Sbjct: 5 QCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICG-----RKFARSDERKRHRDIQHILP 58
Query: 142 HKCTICESTYLTKVELKNHI--LKIHQG 167
E L+N + LK G
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 39.0 bits (92), Expect = 2e-04
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 171 FQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAE 230
FQC C R F + T H + HT EKPF C +C K R+ E K+H I
Sbjct: 4 FQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHR-DIQH---ILP 58
Query: 231 YHCTYCDYICSSRTILKSHI 250
+ + S L++ +
Sbjct: 59 ILEDKVEELLSKNYHLENEV 78
Score = 38.6 bits (91), Expect = 3e-04
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKP 290
+ C C S L +HI + H + KPF C+ C KF + + K H + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGE--KPFACDICGRKFARSDERKRHR-DIQ-HILP 58
Query: 291 FKCSFCEYKCTTKFGLKSHVT--RIHSNQK 318
E + + L++ V + ++
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 37.5 bits (88), Expect = 6e-04
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 198 KPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKHAND 257
KPF+C +C R+ L HI R H E + C C + K H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHTG--EKPFACDICGRKFARSDERKRHR-DIQH-- 55
Query: 258 EDKPFTCEHCDSKFCKKYDMKMHMS--RAHYGLK 289
P + + K Y ++ ++ + G +
Sbjct: 56 -ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 44.1 bits (105), Expect = 3e-06
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 137 KGDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS--FCDRRFYFKNECTKHYLEHH 194
C TY LK H L+ H G+ + C C +F +E T+HY H
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKH 60
Query: 195 TNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T +PF+C C R+ L H+ + H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHM-KRH 88
Score = 39.0 bits (92), Expect = 2e-04
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 59 CEYQTNTKIYIRRHMLKIHLR----QRNLECSL--CDSTFSDNMDLKKHIQRKHTNDRPF 112
C+Y K Y + LK HLR ++ C C F+ + +L +H RKHT RPF
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPF 66
Query: 113 SCNFCD 118
C CD
Sbjct: 67 QCQKCD 72
Score = 38.3 bits (90), Expect = 3e-04
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 105 KHTNDRPFSCNFCDYKSKTKYDITSH---SLRKHSKGDKPHKCTI--CESTYLTKVELKN 159
K T C K+ TK +SH LR H+ G+KP+ C C + EL
Sbjct: 1 KRTATHTCDYAGCG-KTYTK---SSHLKAHLRTHT-GEKPYHCDWDGCGWKFARSDELTR 55
Query: 160 HILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEH 193
H + H G FQC CDR F + H H
Sbjct: 56 H-YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 33.3 bits (77), Expect = 0.021
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTC--EHCDSKFCKKYDMKMHMSRAHYGL 288
C + + LK+H+ + H + KP+ C + C KF + ++ H R H G
Sbjct: 8 CDYAGCGKTYTKSSHLKAHL-RTHTGE--KPYHCDWDGCGWKFARSDELTRHY-RKHTGH 63
Query: 289 KPFKCSFCE 297
+PF+C C+
Sbjct: 64 RPFQCQKCD 72
Score = 31.0 bits (71), Expect = 0.12
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTY--CDYICSSRTILKSHIN 251
T C ++ LK H LR H E YHC + C + + L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH-LRTHTG--EKPYHCDWDGCGWKFARSDELTRHY- 57
Query: 252 KKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHY 286
+KH +PF C+ CD F + + +HM + H+
Sbjct: 58 RKHTGH--RPFQCQKCDRAFSRSDHLALHM-KRHF 89
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 44.0 bits (105), Expect = 4e-06
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 97 DLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVE 156
+ + F C FC Y++ H R H+ ++P+ C IC + +
Sbjct: 4 GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHT-DERPYTCDICHKAFRRQDH 60
Query: 157 LKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
L++H IH + F+C C + F H H
Sbjct: 61 LRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHK-TLHMQTSSPTAA 105
Score = 41.7 bits (99), Expect = 3e-05
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
+K F C C +++ L H R H D E Y C C + L+ H
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIH-ERTHTD--ERPYTCDICHKAFRRQDHLRDH-RYI 67
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
H+ +KPF C+ C FC+ + +H H +
Sbjct: 68 HSK--EKPFKCQECGKGFCQSRTLAVHK-TLHMQTSSPTAA 105
Score = 37.8 bits (89), Expect = 6e-04
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDK 140
C C F+ + +L H +R HT++RP++C+ C K LR H +K
Sbjct: 19 ICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICH-----KAFRRQDHLRDHRYIHSKEK 72
Query: 141 PHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
P KC C + L H +H + +
Sbjct: 73 PFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105
Score = 27.0 bits (61), Expect = 4.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSCNFSCTSNTDLLEH 337
K F C FC T + L H R H++++ Y C C+ + L +H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDH 64
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 43.3 bits (103), Expect = 5e-06
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 260 KPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIH 314
C+ C F + + H H K F C E C F K H+ ++H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP--EPACGKSFNFKKHLKEHMKLH 63
Query: 315 SNQK-YFCGSC 324
S+ + Y C
Sbjct: 64 SDTRDYICEFS 74
Score = 39.5 bits (93), Expect = 1e-04
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 88 CDSTFSDNMDLKKHIQRKHTNDRPFSCNF--CDYKSKTKYDITSHSLRKHSK---GDKPH 142
C FS+ L H + +H + + FSC C K L++H K + +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACG-----KSFNFKKHLKEHMKLHSDTRDY 69
Query: 143 KCTIC 147
C
Sbjct: 70 ICEFS 74
Score = 36.4 bits (85), Expect = 0.001
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 165 HQGQTRFQCSF--CDRRFYFKNECTKHYLEHHTNEKPFKCT--LCSYKAKRNFELKQHIL 220
G + C F C R F + H H ++K F C C LK+H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM- 60
Query: 221 RIHQDNIEAEYHCTYC 236
++H D +Y C +
Sbjct: 61 KLHSD--TRDYICEFS 74
Score = 36.0 bits (84), Expect = 0.002
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 106 HTNDRPFSCNF--CDYKSKTKYDITSHSLRKHSKGDKPHKCT--ICESTYLTKVELKNHI 161
+ C+F C + + H +H K C C ++ K LK H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-HQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 162 LKIHQGQTRFQCSFCDRRF 180
K+H + C F
Sbjct: 61 -KLHSDTRDYICEFSGPSS 78
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 43.2 bits (103), Expect = 6e-06
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 140 KPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNE 197
+P+ C + C+ + L HI +IH GQ FQC C R F + T H + HT E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 198 KPFKCTLCSYKAKRNFELKQHILRIH 223
KPF C +C K R+ E K+H +IH
Sbjct: 61 KPFACDICGRKFARSDERKRHT-KIH 85
Score = 41.7 bits (99), Expect = 2e-05
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
KPF C C F + + H+ R H G KPF C C K K H T+IH QK
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 39.8 bits (94), Expect = 9e-05
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 260 KPFTC--EHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQ 317
+P+ C E CD +F + + H+ R H G KPF+C C + L +H R H+ +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 318 K-YFCGSCNFSCTSNTDLLEHVQT 340
K + C C + + H +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 38.6 bits (91), Expect = 3e-04
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 197 EKPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKH 254
E+P+ C + C + ++ L +HI RIH + + C C S L +HI + H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI-RIHTG--QKPFQCRICMRNFSRSDHLTTHI-RTH 57
Query: 255 ANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLK 289
+ KPF C+ C KF + + K H + H K
Sbjct: 58 TGE--KPFACDICGRKFARSDERKRHT-KIHLRQK 89
Score = 34.7 bits (81), Expect = 0.005
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 70 RRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFC 117
RH+ +IH Q+ +C +C FS + L H R HT ++PF+C+ C
Sbjct: 23 TRHI-RIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Score = 33.2 bits (77), Expect = 0.018
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 33/111 (29%)
Query: 88 CDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTIC 147
CD FS + L +H R HT G KP +C IC
Sbjct: 12 CDRRFSQSGSLTRH-IRIHT------------------------------GQKPFQCRIC 40
Query: 148 ESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEK 198
+ L HI + H G+ F C C R+F +E +H + H +K
Sbjct: 41 MRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH-TKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 43.2 bits (103), Expect = 7e-06
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
+ C +C + + L +H H E Y C C + + H+ +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSG--EKPYSCPVCGLRFKRKDRMSYHV-RS 57
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLK 289
H KP+ C+ C F + + H+ + H G
Sbjct: 58 HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 41.7 bits (99), Expect = 2e-05
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHS--NQ 317
CE C F Y + H +H G KP+ C C + K + HV R H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVG 63
Query: 318 K-YFCGSC--NFSCTSNTDLLEHVQTNH 342
K Y C SC FS + L H++ H
Sbjct: 64 KPYICQSCGKGFSRPDH--LNGHIKQVH 89
Score = 40.9 bits (97), Expect = 5e-05
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNE 197
G C IC + L H H G+ + C C RF K+ + H + H
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGS 61
Query: 198 --KPFKCTLCSYKAKRNFELKQHILRIH 223
KP+ C C R L HI ++H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.4 bits (93), Expect = 1e-04
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK-----G 138
C +C F D L +H + H+ ++P+SC C + + H +
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCG-LRFKR----KDRMSYHVRSHDGSV 62
Query: 139 DKPHKCTICESTYLTKVELKNHILKIHQG 167
KP+ C C + L HI ++H G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.0 bits (79), Expect = 0.011
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 106 HTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNHILKIH 165
+ +C C + Y + H HS G+KP+ C +C + K + H+ + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHS-GEKPYSCPVCGLRFKRKDRMSYHV-RSH 58
Query: 166 QGQTR--FQCSFCDRRFYFKNECTKHYLEHHTNEK 198
G + C C + F + H + H+
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 26.7 bits (60), Expect = 4.4
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 8/58 (13%)
Query: 284 AHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGSCNFSCTSNTDLLEH 337
G C C F H+ HS +K Y C C + H
Sbjct: 1 GSSGSSGVACE----ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 42.2 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 142 HKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYFKNECTKHYLEHHTNE 197
+ C C + +LK H H Q ++C CD+RF + +H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAGY 59
Query: 198 KPFKCTLCSYKAKRNFELKQHILRIH 223
K CS+ K +H+ H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.1 bits (97), Expect = 3e-05
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 263 TCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK- 318
E+C F K +K+H +H P++C C +F L S + ++H+
Sbjct: 5 HFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEG--CDKRFSLPSRLKRHEKVHAGYPC 61
Query: 319 YFCGSCNFSCTSNTDLLEHVQTNH 342
SC+F + T L+HV H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.1 bits (97), Expect = 3e-05
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNF--CDYKSKTKYDITSHSLRKHSKGDKP 141
C F + LK H Q HT P+ C CD + + H + H+ G
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHA-GYPC 61
Query: 142 HKCTICESTYLTKVELKNHILKIH 165
K C T H+ + H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 39.9 bits (94), Expect = 7e-05
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 59 CEYQTNTKIYIRRHMLKIHLRQ----RNLECS--LCDSTFSDNMDLKKHIQRKHTNDRPF 112
C ++ K + + + LK+H EC CD FS LK+H ++ H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCK 62
Query: 113 SCNFCDYKSKTKYDITSHSLRKH 135
+ C + KT H H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.3 bits (82), Expect = 0.004
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 260 KPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIH 314
P+ C H CD +F +K H + H G K C + T HV H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 31.4 bits (72), Expect = 0.089
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 171 FQCSF--CDRRFYFKNECTKHYLEHHTNEKPFKCT--LCSYKAKRNFELKQHILRIHQDN 226
+ C F C + F N+ H HT + P++C C + LK+H ++H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAG- 58
Query: 227 IEAEYHCTYCDYICSSRTILKSHINKKH 254
C ++ + T+ H+ + H
Sbjct: 59 -YPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 41.3 bits (98), Expect = 1e-05
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHS 315
+ F CE C F ++ +K H R+H KP+ C C T + L H +IHS
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 37.1 bits (87), Expect = 5e-04
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 171 FQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
F C C R F + +HY HTNEKP+ C LC+ R L +H +IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCD 118
C +C F+ LK+H R HTN++P+ C C+
Sbjct: 4 VCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCN 37
Score = 31.3 bits (72), Expect = 0.043
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 140 KPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEK 198
+ C +C + + LK H + H + + C C+R F ++ +H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 31.3 bits (72), Expect = 0.047
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 289 KPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGSCNFSCTSNTDLLEHVQTNH 342
+ F C CT F + H+ R H+N+K Y CG CN + T L+ H Q H
Sbjct: 1 RSFVCE----VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 30.9 bits (71), Expect = 0.060
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 52 KLFSCDLCEYQTNTKIYIRRHMLKIHLR----QRNLECSLCDSTFSDNMDLKKHIQRKHT 107
+ F C++C T+ + R+ LK H R ++ C LC+ F+ L +H Q+ H+
Sbjct: 1 RSFVCEVC-----TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 25.9 bits (58), Expect = 3.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 198 KPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKH 254
+ F C +C+ R LK+H R H + E Y C C+ + R +L H K H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSHTN--EKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 35/166 (21%)
Query: 1 MKQEDEILNHSRECAFVSRLDDSYNFICILCNYH--AENFEN-IYLHLPSHFEQKLFSCD 57
+K E+E H + D YN + + Y H+ H L + +
Sbjct: 437 VKLENEYALHRS-------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIE 485
Query: 58 LCE-YQTNTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDL---KKHIQRKHTNDRPFS 113
E +++ L+ +R + + S + L K +I ND +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---NDPKYE 542
Query: 114 CNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKN 159
L K + T L ++ L
Sbjct: 543 RLVNAIL---------DFLPKIE-----ENLICSKYTDLLRIALMA 574
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 41.7 bits (99), Expect = 4e-05
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 197 EKPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKH 254
+ C C+ + N +++H L H + C C + LK H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKH-LHTHG---PRVHVCAECGKAFVESSKLKRHQ-LVH 57
Query: 255 ANDEDKPFTC--EHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT- 311
+KPF C E C +F ++++ H+ R H G +P+ C F C KF +++
Sbjct: 58 TG--EKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDG--CNKKFAQSTNLKS 112
Query: 312 --RIHSNQK 318
H+ K
Sbjct: 113 HILTHAKAK 121
Score = 41.7 bits (99), Expect = 5e-05
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 129 SHSLRKHSK--GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYFKN 184
+ ++RKH G + H C C ++ +LK H +H G+ FQC+F C +RF
Sbjct: 20 NSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDF 78
Query: 185 ECTKHYLEHHTNEKPFKCTL--CSYKAKRNFELKQHILRIH 223
H + HT ++P+ C C+ K ++ LK HI H
Sbjct: 79 NLRTH-VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI-LTH 117
Score = 41.3 bits (98), Expect = 6e-05
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSN 316
+ C C F + +K H H G KPF+C+F C +F L ++ RIH+
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEG--CGKRFSLDFNLRTHVRIHTG 89
Query: 317 QK-YFCGS--CN--FSCTSNTDLLEHVQT 340
+ Y C CN F+ ++N L H+ T
Sbjct: 90 DRPYVCPFDGCNKKFAQSTN--LKSHILT 116
Score = 39.0 bits (92), Expect = 4e-04
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 16/121 (13%)
Query: 88 CDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKC 144
C F DN ++KH H R C C K + S L++H G+KP +C
Sbjct: 13 CTKMFRDNSAMRKH-LHTHG-PRVHVCAECG-----KAFVESSKLKRHQLVHTGEKPFQC 65
Query: 145 TI--CESTYLTKVELKNHILKIHQGQTRFQCSF--CDRRFYFKNECTKHYLEHHTNEKPF 200
T C + L+ H+ +IH G + C F C+++F H L H K
Sbjct: 66 TFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH-AKAKNN 123
Query: 201 K 201
+
Sbjct: 124 Q 124
Score = 36.0 bits (84), Expect = 0.004
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 44/159 (27%)
Query: 140 KPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNE 197
+ C C + ++ H L H G C+ C + F ++ +H L H T E
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH-LHTH-GPRVHVCAECGKAFVESSKLKRHQLVH-TGE 60
Query: 198 KPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKHA 255
KPF+CT C + +F L+ H+ RIH
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHV-RIHT------------------------------- 88
Query: 256 NDEDKPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFK 292
D+P+ C C+ KF + ++K H+ H K +
Sbjct: 89 --GDRPYVCPFDGCNKKFAQSTNLKSHI-LTHAKAKNNQ 124
Score = 33.3 bits (77), Expect = 0.042
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 258 EDKPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHS 315
E + C H C F M+ H+ H G + C+ C LK H +H+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHL-HTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHT 58
Query: 316 NQK-YFCGSC----NFSCTSNTDLLEHVQT 340
+K + C FS N L HV+
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFN--LRTHVRI 86
Score = 30.9 bits (71), Expect = 0.24
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 52 KLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSL--CDSTFSDNMDLKKHIQRKHTND 109
++ C C ++RH +H ++ +C+ C FS + +L+ H R HT D
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGD 90
Query: 110 RPFSCNF--CDYKSKTKYDITSHSLRKHSK---GDKPHK 143
RP+ C F C+ K S +L+ H K ++
Sbjct: 91 RPYVCPFDGCN-----KKFAQSTNLKSHILTHAKAKNNQ 124
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 40.9 bits (95), Expect = 5e-05
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 217 QHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKKHAN-DEDKPFTCEHCDSKFCKKY 275
H +E Y C YC + + H++ +H N + + C C+ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 276 DMKMHMSRAHYGLKPFKCS 294
+ H + H G + FK +
Sbjct: 65 ALSEHNLKYHPGEENFKLT 83
Score = 40.1 bits (93), Expect = 9e-05
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 70 RRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTN---DRPFSCNFCDYKSKTKYD 126
H + + EC C D H+ +H N + + C C++ +K
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 127 ITSHSLRKHSKGDKPHKCTICESTYLTKVE 156
++ H+L+ H G++ K T+ + T E
Sbjct: 66 LSEHNLKYHP-GEENFKLTMVKRNNQTIFE 94
Score = 38.2 bits (88), Expect = 6e-04
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 96 MDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHS--KGDKPHKCTICESTYLT 153
H Q+ + + C +C +++ T H +H + + C C
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 154 KVELKNHILKIHQGQTRFQCS 174
L H LK H G+ F+ +
Sbjct: 63 YDALSEHNLKYHPGEENFKLT 83
Score = 37.8 bits (87), Expect = 6e-04
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 248 SHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLK---PFKCSFCEYKCTTKF 304
H + + + + C++C + H+ H + + C C +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 305 GLKSHVTRIHSNQKYF 320
L H + H ++ F
Sbjct: 65 ALSEHNLKYHPGEENF 80
Score = 37.4 bits (86), Expect = 8e-04
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 189 HYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQD-NIEAEYHCTYCDYICSSRTILK 247
H ++ E ++C C+++ H+ H + + + Y C C+++ L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 248 SHINKKHA 255
H K H
Sbjct: 68 EHNLKYHP 75
Score = 37.1 bits (85), Expect = 0.001
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 165 HQGQTRFQCSFCDRRFYFKNECTKHYLEHHTN---EKPFKCTLCSYKAKRNFELKQHILR 221
+ + ++C +C + N T H H N + C C++ KR L +H L+
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK 72
Query: 222 IHQDN 226
H
Sbjct: 73 YHPGE 77
Score = 35.5 bits (81), Expect = 0.004
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 39 ENIYLHLPSHFEQKLFSCDLCEYQTNTKIYIRRHMLKIHLRQR---NLECSLCDSTFSDN 95
+ + + + + + C C +QT H+ H + C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 96 MDLKKHIQRKHTNDRPFSCN 115
L +H + H + F
Sbjct: 64 DALSEHNLKYHPGEENFKLT 83
Score = 30.5 bits (68), Expect = 0.29
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 130 HSLRKHSKGDKPHKCTICESTYLTKVELKNHILKIHQG---QTRFQCSFCDRRFYFKNEC 186
H +++ K + ++C C H+ H + + C C+ +
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 187 TKHYLEHHTNEKPFKCTL 204
++H L++H E+ FK T+
Sbjct: 67 SEHNLKYHPGEENFKLTM 84
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 39.1 bits (92), Expect = 8e-05
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 258 EDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFC 296
KP+ C+ C F + + H+ + H +P KC
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFC 117
+ C C FS L HI++ HT++RP C
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLC 205
+ C C + F + H + HT+E+P KC +
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYC 236
+ KP+ C C R L HI ++H E + C
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVH--TSERPHKCQVW 47
Score = 31.0 bits (71), Expect = 0.058
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 102 IQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTIC 147
+ +P+ C C + H + H+ ++PHKC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-SERPHKCQVW 47
Score = 31.0 bits (71), Expect = 0.062
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRF 180
KP+ C C + L HI ++H + +C
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 27.9 bits (63), Expect = 0.67
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSC 324
+ KP+ C C + L H+ ++H++++ + C
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 39.8 bits (94), Expect = 8e-05
Identities = 21/103 (20%), Positives = 27/103 (26%), Gaps = 31/103 (30%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
HT EKP+ C+ C K F KQ L +H
Sbjct: 10 HTGEKPYACSHCD-KT---FRQKQL-LDMHFKRYHDP----------------------- 41
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFC 296
N F C C F ++ M H G +
Sbjct: 42 --NFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENS 81
Score = 37.5 bits (88), Expect = 6e-04
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYG----LKPFKCSFCEYKCTTKFGLKSHVTRIHS 315
KP+ C HCD F +K + MH + ++ F CS C T + + H +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNCA 71
Query: 316 NQK-YFCGSC 324
+
Sbjct: 72 GPDGVEGENS 81
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHT----NDRPFSCNFCDYKSKTKYDITSHSLRKHSK-- 137
CS CD TF L H +++ F C+ C K+ T+ +++ +H+
Sbjct: 17 ACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCG-KTFTR----RNTMARHADNC 70
Query: 138 -GDKPHKCTIC 147
G +
Sbjct: 71 AGPDGVEGENS 81
Score = 34.4 bits (80), Expect = 0.006
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 98 LKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKH---SKGDKPHKCTICESTYLTK 154
R HT ++P++C+ CD + K + H +++ + C+ C T+ +
Sbjct: 3 SGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 155 VELKNHILKIHQGQTRFQCSFCDRRF 180
+ H G +
Sbjct: 61 NTMARH-ADNCAGPDGVEGENSGPSS 85
Score = 29.8 bits (68), Expect = 0.29
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYLEHH---TNEKPFKCTLCSYKAKRNFELKQHIL 220
H G+ + CS CD+ F K H+ +H F C+ C R + +H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-A 67
Query: 221 RIH 223
Sbjct: 68 DNC 70
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 39.7 bits (94), Expect = 2e-04
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT-RIHSNQK 318
+P+ C C KF K+ + HM + H G+KP++C+ C +F + + S K
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHM-KIHTGIKPYECN----ICAKRFMWRDSFHRHVTSCTK 90
Query: 319 -YFCGSC--NFSCTSN 331
Y N + S
Sbjct: 91 SYEAAKAEQNTTEASG 106
Score = 39.7 bits (94), Expect = 2e-04
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 104 RKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNHILK 163
+ D+ + C C K H + H G +P+ C +C + K L H +K
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHL-GLRPYGCGVCGKKFKMKHHLVGH-MK 58
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLC 205
IH G ++C+ C +RF +++ +H + K ++
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKA 97
Score = 37.0 bits (87), Expect = 0.001
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 259 DKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHS 315
DK + C+ C F K HM H GL+P+ C C KF +K H+ +IH+
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCG----VCGKKFKMKHHLVGHMKIHT 61
Query: 316 NQK-YFCGSC--NFSCTSN 331
K Y C C F +
Sbjct: 62 GIKPYECNICAKRFMWRDS 80
Score = 30.5 bits (70), Expect = 0.25
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 37/103 (35%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINKK 253
H +P+ C +C K K L H ++IH
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGH-MKIHT----------------------------- 61
Query: 254 HANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFC 296
KP+ C C +F + H+ K ++ +
Sbjct: 62 ----GIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKA 97
Score = 26.6 bits (60), Expect = 5.5
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGSCNFSCTSNTDLLEH 337
S G K + C +C F KS +H + Y CG C L+ H
Sbjct: 2 SSGSSGDKLYPC-----QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 38.2 bits (90), Expect = 3e-04
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDK 140
+C +C +F + L H H++ RP+ C +C K ++KH+ G+K
Sbjct: 3 DCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCG-----KRFHQKSDMKKHTFIHTGEK 56
Query: 141 PHKCTIC 147
PHKC +C
Sbjct: 57 PHKCQVC 63
Score = 32.0 bits (74), Expect = 0.043
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIH 314
+P+ C++C +F +K DMK H H G KP KC C F S++ R H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQ----VCGKAFSQSSNLITHSRKH 80
Score = 30.5 bits (70), Expect = 0.16
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 262 FTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK 318
F C+ C F + + H+ H +P+ C C +F KS + IH+ +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQ----YCGKRFHQKSDMKKHTFIHTGEK 56
Query: 319 -YFCGSC--NFSCTSNTDLLEH 337
+ C C FS +SN L+ H
Sbjct: 57 PHKCQVCGKAFSQSSN--LITH 76
Score = 29.3 bits (67), Expect = 0.46
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 143 KCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
C IC ++ L H L IH + C +C +RF+ K++ KH HT EKP KC
Sbjct: 3 DCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 203 TLCSYKAKRNFELKQHILRIH 223
+C ++ L H R H
Sbjct: 61 QVCGKAFSQSSNLITH-SRKH 80
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 38.4 bits (88), Expect = 4e-04
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 258 EDKPFTCEHCDSKFCKKYD-MKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSN 316
E C C+ K +K HM KC C + +K GL H HS
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 317 QK 318
+
Sbjct: 81 KP 82
Score = 34.2 bits (77), Expect = 0.011
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 83 LECSLCDSTFSDNMD-LKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHS 136
C C+ + LKKH++ C C + K+K + H++ +HS
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 31.5 bits (70), Expect = 0.12
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 144 CTICES-TYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKP 199
C C T T V LK H+ + Q +C C ++F K H + H+ +
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 30.7 bits (68), Expect = 0.19
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 50 EQKLFSCDLCEYQT-NTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTN 108
E+ C C T T + +++HM Q L+C C F L H +H+
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 109 D 109
Sbjct: 81 K 81
Score = 29.1 bits (64), Expect = 0.73
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 230 EYHCTYCDYICSSRTI-LKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGL 288
E C C+ + + LK H+ + C+HC +F K + H H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQD--ALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 289 KP 290
Sbjct: 82 PS 83
Score = 26.4 bits (57), Expect = 6.9
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 128 TSHSLRKH----SKGDKPHKCTICESTYLTKVELKNHILKIHQGQ 168
T L+KH K KC C + +K L H + H +
Sbjct: 37 TLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 26.4 bits (57), Expect = 7.0
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 188 KHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
KH + KC C + K L H + H
Sbjct: 43 KHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 36.9 bits (86), Expect = 7e-04
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 157 LKNHILKIHQGQTRFQCS--FCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFE 214
L N++ + C CDRRF +E T+H HT +KPF+C +C R+
Sbjct: 9 LLNYV---VPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDH 64
Query: 215 LKQHILRIH 223
L HI R H
Sbjct: 65 LTTHI-RTH 72
Score = 36.9 bits (86), Expect = 8e-04
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 247 KSHINKKHANDEDKPFTC--EHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKF 304
+ + + +P+ C E CD +F + ++ H+ R H G KPF+C C +
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSD 63
Query: 305 GLKSHVTRIHS 315
L +H+ R H+
Sbjct: 64 HLTTHI-RTHT 73
Score = 34.6 bits (80), Expect = 0.004
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 129 SHSLRKHSKGDKPHKCTI--CESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNEC 186
++ L +P+ C + C+ + EL HI +IH GQ FQC C R F +
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHL 65
Query: 187 TKHYLEH 193
T H H
Sbjct: 66 TTHIRTH 72
Score = 31.9 bits (73), Expect = 0.038
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 70 RRHMLKIHLR--QRNLECSL--CDSTFSDNMDLKKHIQRKHTNDRPFSCNFCD 118
+ L ++ R C + CD FS + +L +HI R HT +PF C C
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICM 56
Score = 30.0 bits (68), Expect = 0.23
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 36/92 (39%)
Query: 194 HTNEKPFKCTL--CSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHIN 251
+P+ C + C + R+ EL +HI RIH
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHI-RIHTG-------------------------- 46
Query: 252 KKHANDEDKPFTCEHCDSKFCKKYDMKMHMSR 283
KPF C C F + + H+
Sbjct: 47 -------QKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 29.2 bits (66), Expect = 0.43
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 103 QRKHTNDRPFSCN--FCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNH 160
RP++C CD + ++T H +R H+ G KP +C IC + L H
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRH-IRIHT-GQKPFQCRICMRNFSRSDHLTTH 68
Query: 161 ILKIH 165
I + H
Sbjct: 69 I-RTH 72
Score = 26.5 bits (59), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 70 RRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHT 107
RH+ +IH Q+ +C +C FS + L H R HT
Sbjct: 38 TRHI-RIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHT 73
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 35.3 bits (81), Expect = 0.001
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 80 QRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFC 117
++ + C +C F D L +H + H+ ++P+S
Sbjct: 10 RKQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 34.1 bits (78), Expect = 0.003
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 258 EDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFC 296
K CE C F Y + H +H G KP+
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.064
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 131 SLRKHSKGDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFC 176
S + K C IC + L H L H G+ +
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.077
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 165 HQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCS 206
+ + + C C + F +H L H + EKP+ S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH-SGEKPYSSGPSS 47
Score = 25.3 bits (55), Expect = 5.1
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSCN 325
+ K C C + L H HS +K Y G +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPSS 47
Score = 25.3 bits (55), Expect = 6.0
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTIC 147
+ +C C + Y + H HS G+KP+
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHK-LSHS-GEKPYSSGPS 46
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 162 LKIHQGQTRFQCSF--CDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F C++ C RF +E ++H H+ KP +
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS 46
Score = 33.8 bits (78), Expect = 0.004
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 103 QRKHTNDRPFSCNF--CDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++PF+C + C ++ +++ H R HS G KP +
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRH-RRSHS-GVKPSGPS 46
Score = 30.3 bits (69), Expect = 0.080
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 194 HTNEKPFKCT--LCSYKAKRNFELKQHILRIH 223
T EKPF CT C ++ R+ EL +H R H
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRH-RRSH 37
Score = 25.7 bits (57), Expect = 3.5
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFG----LKSHVTRIHSNQKYF 320
+ G KPF C++ C +F L H R HS K
Sbjct: 5 SSGTGEKPFACTW--PGCGWRFSRSDELSRHR-RSHSGVKPS 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 33.2 bits (77), Expect = 0.006
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPF 291
KP+ CE C ++F +K H+ R H G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHL-RIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
EKP+ C +C + + LK H+ RIH
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
Score = 28.6 bits (65), Expect = 0.29
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFS 113
C +C + F LK H R HT P S
Sbjct: 13 PCEICGTRFRHLQTLKSH-LRIHTGSGPSS 41
Score = 26.7 bits (60), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
S + G KP+ C C + LKSH+ RIH+
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIHTGSG 38
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 33.6 bits (78), Expect = 0.009
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFC 117
IH ++ C C FS + L +H QR HT ++P+ C C
Sbjct: 7 GIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLEC 48
Score = 32.8 bits (76), Expect = 0.017
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRI 222
IH G+ + C C + F + +H HT EKP+KC C +N L H RI
Sbjct: 7 GIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH-QRI 64
Query: 223 H 223
H
Sbjct: 65 H 65
Score = 32.8 bits (76), Expect = 0.019
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSN 316
KP+ C C F + + H R H G KP+KC +C F S + RIH++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCL----ECGKAFSQNSGLINHQRIHTS 67
Query: 317 QK 318
Sbjct: 68 GP 69
Score = 30.9 bits (71), Expect = 0.099
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 132 LRKHSK---GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTK 188
S G+KP+ C C + L H ++H G+ ++C C + F +
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 189 HYLEHHTNEKPF 200
H HT+
Sbjct: 61 H-QRIHTSGPSS 71
Score = 30.1 bits (69), Expect = 0.15
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 98 LKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVEL 157
H+ ++P+ C C + H R H+ G+KP+KC C + L
Sbjct: 2 SSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQ-RVHT-GEKPYKCLECGKAFSQNSGL 58
Query: 158 KNHILKIHQG 167
NH +IH
Sbjct: 59 INH-QRIHTS 67
Score = 29.4 bits (67), Expect = 0.28
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGSCNFSCTSNTDLLEH 337
H G KP+ C +C F S + R+H+ +K Y C C + + N+ L+ H
Sbjct: 7 GIHSGEKPYGCV----ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
P+ C C+ F K + +H R H KP S
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGPS 44
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+CS C+ +FS + L H QR HT ++P +
Sbjct: 14 KCSQCEKSFSGKLRLLVH-QRMHTREKPSGPS 44
Score = 27.9 bits (63), Expect = 0.61
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G ++CS C++ F K H HT EKP +
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGPS 44
Score = 27.5 bits (62), Expect = 0.92
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
+ G+ P+KCS CE + K L H R+H+ +K
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREK 39
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
P+KC+ C L H R+H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVH-QRMH 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
P+ C+ C+ K + H R H+ +KP +
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHT-REKPSGPS 44
Score = 25.6 bits (57), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
G P+KC+ CE ++ K+ L H ++H + S
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
CS C+ FS L H Q+ H ++P +
Sbjct: 12 GCSCCEKAFSSKSYLLVH-QQTHAEEKPSGPS 42
Score = 32.5 bits (75), Expect = 0.011
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C C+ F K + +H + H KP S
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQ-QTHAEEKPSGPS 42
Score = 29.4 bits (67), Expect = 0.17
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F CS C++ F K+ H + H EKP +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQ-QTHAEEKPSGPS 42
Score = 29.4 bits (67), Expect = 0.18
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
S G KPF CS CE K F KS++ + H+ +K S
Sbjct: 2 SSGSSGEKPFGCSCCE-KA---FSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 27.5 bits (62), Expect = 0.88
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
+ EKPF C+ C KA F K + L +HQ
Sbjct: 5 SSGEKPFGCSCCE-KA---FSSKSY-LLVHQ 30
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 106 HTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++PF C+ C+ +K + H + H+ +KP +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQ-QTHA-EEKPSGPS 42
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
G+KP C+ CE + +K L H + H + S
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGPS 42
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 33.5 bits (77), Expect = 0.013
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 163 KIHQGQTRFQCSF--CDRRFYFKNECTKHYLEHHTNEKPFKCTL--CSYKAKRNFELKQH 218
CS C + YFK+ K + HT EKPF C+ C + R+ EL +H
Sbjct: 10 IDSSRIRSHICSHPGCGKT-YFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 219 ILRIH 223
R H
Sbjct: 69 -RRTH 72
Score = 32.4 bits (74), Expect = 0.026
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 257 DEDKPFTCEH--CDSKFCKKYDMKMHMSRAHYGLKPFKCSF--CEYKCTTKFGLKSHVTR 312
+ C H C + K +K H R H G KPF CS+ CE + L H R
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHT-RTHTGEKPFSCSWKGCERRFARSDELSRHR-R 70
Query: 313 IH 314
H
Sbjct: 71 TH 72
Score = 30.0 bits (68), Expect = 0.20
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 75 KIHLRQRNLECSL--CDSTFSDNMDLKKHIQRKHTNDRPFSCNF--CDYKSKTKYDITSH 130
R R+ CS C T+ + LK H R HT ++PFSC++ C+ + +++ H
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 131 SLRKH 135
R H
Sbjct: 69 -RRTH 72
Score = 27.7 bits (62), Expect = 1.4
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 103 QRKHTNDRPFSCNF--CDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
Q + R C+ C + +H R H+ G+KP C+
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTHT-GEKPFSCS 51
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 32.2 bits (74), Expect = 0.016
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ C C +F L KH QR H+ ++P +
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.37
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F + H R H G KP S
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C C + F + + KH H+ EKP +
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44
Score = 26.4 bits (59), Expect = 1.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P++C C + + H R HS G+KP +
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHS-GEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+ C C + L +H R+H
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQ-RVH 35
Score = 24.5 bits (54), Expect = 9.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+ C +C F S + R+HS +K
Sbjct: 5 SSGTGEKPYNCK----ECGKSFRWASCLLKHQRVHSGEKPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.8 bits (74), Expect = 0.016
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 262 FTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
+ CE C + K +K H+ R H ++P+ C++C + TK L H+ + ++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAHSK 56
Score = 32.4 bits (73), Expect = 0.020
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 170 RFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHI 219
++ C C R + KH + HT+ +P+ CT C++ K L +H+
Sbjct: 1 KYICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 30.8 bits (69), Expect = 0.087
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLK 289
Y C C ++LK HI + + +P+ C +C+ F K ++ HM ++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHI---RTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAHSK 56
Score = 30.1 bits (67), Expect = 0.14
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHS 136
C C LKKH R HT+ RP+ C +C++ KTK ++T H ++ +
Sbjct: 3 ICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKA 53
Score = 28.5 bits (63), Expect = 0.51
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 56 CDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDR 110
C+ C + +++H+ + H R C+ C+ +F +L KH + + +
Sbjct: 4 CEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAHSK 56
Score = 27.8 bits (61), Expect = 1.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 142 HKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEK 198
+ C C LK H ++ H + C++C+ F K TKH ++ + K
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAHSK 56
Score = 26.6 bits (58), Expect = 2.4
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 26 FICILCNYHAENFENIYLHLPSHFEQKLFSCDLCEYQTNTKIYIRRHM 73
+IC C + + H+ +H + + + C C + TK + +HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 26.2 bits (57), Expect = 3.8
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 291 FKCSFCEYKCTTKFGLKSHVTRIHSNQKYFCGSCNFSCTSNTDLLEHVQTN 341
+ C C + LK H+ + Y C CNFS + +L +H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 26.2 bits (57), Expect = 3.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 114 CNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNHILKIHQG 167
C C + K + H +R H+ +P+ CT C ++ TK L H +K
Sbjct: 4 CEECGIRXKKPSMLKKH-IRTHT-DVRPYHCTYCNFSFKTKGNLTKH-MKSKAH 54
Score = 25.8 bits (56), Expect = 4.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 200 FKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHINK 252
+ C C + K+ LK+H +R H D YHCTYC++ ++ L H+
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTD--VRPYHCTYCNFSFKTKGNLTKHMKS 51
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 32.2 bits (74), Expect = 0.018
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F +H+ +HT EKP +
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ EC C F N L +H + HT ++P +
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 29.5 bits (67), Expect = 0.18
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H H G KP S
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T +KP++C C +N L +H H
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 26.4 bits (59), Expect = 1.9
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK----GDKPHKCT 145
T +P+ C C K I + SL +H + G+KP +
Sbjct: 4 GSSGTGKKPYECIEC-----GKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 32.1 bits (74), Expect = 0.018
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
CS C TFS L H QR HT +P +
Sbjct: 14 GCSQCAKTFSLKSQLIVH-QRSHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F K + +H R+H G+KP S
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGPS 44
Score = 28.3 bits (64), Expect = 0.39
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G + CS C + F K++ H HT KP +
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVKPSGPS 44
Score = 27.9 bits (63), Expect = 0.65
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +P+ C+ C K + H R H+ G KP +
Sbjct: 4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHT-GVKPSGPS 44
Score = 25.2 bits (56), Expect = 5.2
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G+KP+ CS +C F LKS + R H+ K
Sbjct: 5 SSGTGVKPYGCS----QCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 25.2 bits (56), Expect = 6.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T KP+ C+ C+ K F LK L +HQ
Sbjct: 7 GTGVKPYGCSQCA-KT---FSLKSQ-LIVHQ 32
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K + C CD F + +++H H G KP S
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQ-NVHVGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.037
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C CD FS L+ H Q H ++P +
Sbjct: 14 KCRECDMCFSQASSLRLH-QNVHVGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.91
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C CD F + H H EKP +
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQ-NVHVGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCT 145
++ + C CD ++ + SLR H G+KP +
Sbjct: 4 GSSGMGEKTWKCRECD-MCFSQ----ASSLRLHQNVHVGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
EK +KC C + L+ H +H
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGS 323
+ G K +KC C+ + L+ H +H +K S
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGPSS 45
Score = 24.4 bits (54), Expect = 9.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
G+K KC C+ + L+ H +H G+ S
Sbjct: 9 GEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
ECS+C +F+ L H Q+ HT ++P +
Sbjct: 14 ECSICGKSFTKKSQLHVH-QQIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.095
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F KK + +H + H G KP S
Sbjct: 11 KPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F K++ H + HT EKP +
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVHQ-QIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C K + H + H+ G+KP +
Sbjct: 4 GSSGTGEKPYECSICGKSFTKKSQLHVHQ-QIHT-GEKPSGPS 44
Score = 24.4 bits (54), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C++C + +L H +IH
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVH-QQIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
Q+ EC+ C +F +L H QR HT ++ +
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTH-QRIHTGEKSGPSS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C HC F K ++ H R H G K S
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPSS 44
Score = 29.0 bits (66), Expect = 0.25
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
GQ F+C+ C + F K H HT EK +
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPSS 44
Score = 28.7 bits (65), Expect = 0.28
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +PF C C + K ++ +H R H+ G+K +
Sbjct: 4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHT-GEKSGPSS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T +KPF+CT C + L H RIH
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTH-QRIH 35
Score = 26.0 bits (58), Expect = 3.0
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KPF+C+ C F K ++ RIH+ +K
Sbjct: 5 SSGTGQKPFECT----HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.8 bits (76), Expect = 0.022
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 98 LKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCTICESTYLTK 154
H +D+P+ C+ C +L H G+KP++C IC + +
Sbjct: 5 HHHH-SHMTHSDKPYKCDRCQ-----ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRP 58
Query: 155 VELKNHILKIHQG 167
LK H +IH G
Sbjct: 59 ANLKTH-TRIHSG 70
Score = 32.4 bits (75), Expect = 0.024
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 129 SHSLRKHSK---GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNE 185
H HS DKP+KC C++++ K L +H +H G+ ++C+ C +F
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPAN 60
Query: 186 CTKHYLEHHTNEKPF 200
H H+ EKP+
Sbjct: 61 LKTHT-RIHSGEKPY 74
Score = 31.7 bits (73), Expect = 0.049
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRI 222
+ ++C C F +K H HT EKP++C +C + R LK H RI
Sbjct: 10 HMTHSDKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTH-TRI 67
Query: 223 H 223
H
Sbjct: 68 H 68
Score = 31.7 bits (73), Expect = 0.051
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFC 117
+C C ++F +L H + HT ++P+ CN C
Sbjct: 19 KCDRCQASFRYKGNLASH-KTVHTGEKPYRCNIC 51
Score = 27.0 bits (61), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGSCNFSCTSNTDLLEH 337
+ KP+KC C+ K L SH +H+ +K Y C C +L H
Sbjct: 10 HMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 27.0 bits (61), Expect = 2.3
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSH 249
++KP+KC C + L H +H E Y C C + LK+H
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASH-KTVHTG--EKPYRCNICGAQFNRPANLKTH 64
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 32.8 bits (76), Expect = 0.024
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCNFC 117
+R +C C +FS + DL KH +R HT ++P+ C+ C
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDEC 52
Score = 30.1 bits (69), Expect = 0.21
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSN 316
+ + C+ C F D+ H R H G KP+KC +C F +SH+ R+H+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCD----ECGKAFIQRSHLIGHHRVHTG 71
Query: 317 QK 318
Sbjct: 72 SG 73
Score = 29.7 bits (68), Expect = 0.26
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 129 SHSLRKHSK---GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKNE 185
S S + + +KC C ++ +L H + H G+ ++C C + F ++
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSH 61
Query: 186 CTKHYLEHHTNEKPFK 201
H+ HT P
Sbjct: 62 LIGHH-RVHTGSGPSS 76
Score = 28.6 bits (65), Expect = 0.80
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 97 DLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTIC 147
+ + + R + C+ C D++ H R H+ G+KP+KC C
Sbjct: 5 SSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHT-GEKPYKCDEC 52
Score = 25.9 bits (58), Expect = 7.0
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGSC--NFSCTSNTDLLE 336
+ +KC +C F S ++ R H+ +K Y C C F S+ L+
Sbjct: 11 WQQRERRRYKCD----ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH--LIG 64
Query: 337 H 337
H
Sbjct: 65 H 65
Score = 25.5 bits (57), Expect = 8.1
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ +KC C + +L +H R H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKH-RRTH 41
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.025
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +CS C +F+ L+ H Q+ HT +R +
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
Score = 31.4 bits (72), Expect = 0.036
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F K +++H + H G + S
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F +K+ H + HT E+ +
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQ-KCHTGERHSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C K + H + H+ G++ +
Sbjct: 4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQ-KCHT-GERHSGPS 44
Score = 26.0 bits (58), Expect = 2.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFC 321
+ G KP+KCS C T K L+ H + H+ ++
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGP 43
Score = 25.6 bits (57), Expect = 3.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T EKP+KC+ C K+ F K LRIHQ
Sbjct: 7 GTGEKPYKCSDCG-KS---FTWKSR-LRIHQ 32
Score = 24.8 bits (55), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
G+KP+KC+ C ++ K L+ H K H G+ S
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.026
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+CS C F+ L H Q+ HT +R +
Sbjct: 14 KCSDCGKAFTRKSGLHIH-QQSHTGERHSGPS 44
Score = 30.9 bits (71), Expect = 0.044
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F +K + +H ++H G + S
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGPS 44
Score = 28.2 bits (64), Expect = 0.48
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C K + H + H+ G++ +
Sbjct: 4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQ-QSHT-GERHSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F K+ H + HT E+ +
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQ-QSHTGERHSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFC 321
+ G KP+KCS C T K GL H + H+ ++
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43
Score = 25.9 bits (58), Expect = 2.6
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T EKP+KC+ C KA F K L IHQ
Sbjct: 7 GTGEKPYKCSDCG-KA---FTRKSG-LHIHQ 32
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.028
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+ CS C F+ +L H Q+ HT +RP +
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGPS 44
Score = 30.5 bits (70), Expect = 0.068
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
PF C C F K ++ +H + H G +P S
Sbjct: 11 NPFICSECGKVFTHKTNLIIH-QKIHTGERPSGPS 44
Score = 28.6 bits (65), Expect = 0.31
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F CS C + F K H + HT E+P +
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQ-KIHTGERPSGPS 44
Score = 27.8 bits (63), Expect = 0.56
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T + PF C+ C K ++ H + H+ G++P +
Sbjct: 4 GSSGTGENPFICSECGKVFTHKTNLIIHQ-KIHT-GERPSGPS 44
Score = 25.1 bits (56), Expect = 6.2
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T E PF C+ C L H +IH
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIH-QKIH 35
Score = 24.8 bits (55), Expect = 7.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGS 323
+ G PF CS C T K L H +IH+ ++ S
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.028
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
ECS+C FS L H QR H+ +P +
Sbjct: 14 ECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
Score = 28.2 bits (64), Expect = 0.49
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + +H R H G KP S
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGPS 44
Score = 25.9 bits (58), Expect = 3.4
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F + + H H+ +KP +
Sbjct: 5 SSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGPS 44
Score = 25.5 bits (57), Expect = 3.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C + ++ H R HS G KP +
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHS-GKKPSGPS 44
Score = 24.8 bits (55), Expect = 9.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C++C L H RIH
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.028
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 71 RHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ EC C +FS N L H QR HT + P +
Sbjct: 2 SSG-SSGTGEKPHECRECGKSFSFNSQLIVH-QRIHTGENPSGPS 44
Score = 27.5 bits (62), Expect = 0.72
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ +C C + F F ++ H HT E P +
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGPS 44
Score = 27.5 bits (62), Expect = 0.73
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP C C F + +H R H G P S
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGPS 44
Score = 25.6 bits (57), Expect = 3.6
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP +C C N +L H RIH
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQ-RIH 35
Score = 25.2 bits (56), Expect = 6.4
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P C C + H R H+ G+ P +
Sbjct: 4 GSSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHT-GENPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.031
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+R+ ECS C F L H QR H ++P +
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMH-QRIHRGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+ + C C F +K + MH R H G KP S
Sbjct: 11 RHYECSECGKAFIQKSTLSMH-QRIHRGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.95
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F K+ + H H EKP +
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMHQ-RIHRGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +R + C+ C K ++ H R H G+KP +
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMHQ-RIHR-GEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.1
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T E+ ++C+ C + L H RIH
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMH-QRIH 35
Score = 24.8 bits (55), Expect = 7.6
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G + ++CS +C F KS ++ RIH +K
Sbjct: 5 SSGTGERHYECS----ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C++C F+D +L KH Q+ HT ++P +
Sbjct: 14 ICTVCGKAFTDRSNLIKH-QKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+P+ C C F + ++ H + H G KP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ-KIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
T +RP+ C C + ++ H + H+ G+KP
Sbjct: 4 GSSGTGERPYICTVCGKAFTDRSNLIKHQ-KIHT-GEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ + C+ C + F ++ KH + HT EKP
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQ-KIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T E+P+ CT+C L +H +IH
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKH-QKIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.8 bits (76), Expect = 0.033
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 10/124 (8%)
Query: 192 EHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAEYHCTYCDYICSSRTILKSHIN 251
++ +N K + + KR +L R+ + ++ H S++
Sbjct: 12 KYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN-------PQLLDESSYLY 64
Query: 252 KKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVT 311
+ A+ F C C F +K H+ Y C C+ + T+ HV
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 312 RIHS 315
+ H+
Sbjct: 122 KKHN 125
Score = 32.2 bits (72), Expect = 0.086
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 29 ILCNYHAENFENIYLHLPSHFEQKLFSCDLCEYQTNTKIYIRRHMLKIHLRQRNLECSLC 88
++ N + + L + F C LC ++ + +++H+ + C +C
Sbjct: 50 LIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVC 106
Query: 89 DSTFSDNMDLKKHIQRKHT 107
F+ H+ +KH
Sbjct: 107 KKEFTSTDSALDHVCKKHN 125
Score = 27.2 bits (59), Expect = 4.4
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYG 287
+ C C SS LK HI C C +F H+ + H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTE-----HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 26.4 bits (57), Expect = 9.8
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKVELKNHIL 162
F C C + + H C +C+ + + +H+
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----HTKVCPVCKKEFTSTDSALDHVC 121
Query: 163 KIHQG 167
K H
Sbjct: 122 KKHNI 126
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.034
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+R+ ECS C F+ L H QR HT ++P +
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMH-QRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+ + C C F +K + MH R H G KP S
Sbjct: 11 RHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.76
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +R + C+ C K + H R H+ G+KP +
Sbjct: 4 GSSGTGERHYECSECGKAFARKSTLIMHQ-RIHT-GEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F K+ H HT EKP +
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.2
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T E+ ++C+ C R L H RIH
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMH-QRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.035
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP C C FC K + MH R H K S
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQ-RTHVDDKHSGPS 44
Score = 31.0 bits (71), Expect = 0.050
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F L H QR H +D+ +
Sbjct: 14 KCTECGKAFCWKSQLIMH-QRTHVDDKHSGPS 44
Score = 27.5 bits (62), Expect = 0.91
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ +C+ C + F +K++ H H ++K +
Sbjct: 5 SSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGPS 44
Score = 26.4 bits (59), Expect = 1.9
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P C C K + H R H DK +
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQ-RTHV-DDKHSGPS 44
Score = 26.4 bits (59), Expect = 2.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T EKP KCT C KA F K L +HQ
Sbjct: 7 GTGEKPCKCTECG-KA---FCWKSQ-LIMHQ 32
Score = 25.2 bits (56), Expect = 5.6
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP KC+ +C F KS + R H + K S
Sbjct: 5 SSGTGEKPCKCT----ECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 24.8 bits (55), Expect = 6.8
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
G+KP KCT C + K +L H + H S
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.036
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+R +C+ C +F + L +H QR HT ++P +
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.42
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+P C C F + + H R H G KP S
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQ-RIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T E+P KC C ++ L QH RIH
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQH-QRIH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +RP CN C + H R H+ G+KP +
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQHQ-RIHT-GEKPSGPS 44
Score = 25.5 bits (57), Expect = 3.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEH---HTNEKPFKCT 203
G+ +C+ C + F H ++H HT EKP +
Sbjct: 5 SSGTGERPHKCNECGKSFIQSA----HLIQHQRIHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.041
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C C F K ++ +H R H G KP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.088
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
ECS C F+ +L H QR HT ++P
Sbjct: 14 ECSECQKAFNTKSNLIVH-QRTHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.39
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+CS C + F K+ H HT EKP +
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQ-RTHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.70
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++PF C+ C TK ++ H R H+ G+KP +
Sbjct: 4 GSSGTGEKPFECSECQKAFNTKSNLIVHQ-RTHT-GEKPSGPS 44
Score = 25.1 bits (56), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T EKPF+C+ C KA F K + L +HQ
Sbjct: 7 GTGEKPFECSECQ-KA---FNTKSN-LIVHQ 32
Score = 24.8 bits (55), Expect = 8.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KPF+CS +C F KS++ R H+ +K
Sbjct: 5 SSGTGEKPFECS----ECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.044
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C +C FS + L+ H QR HT ++P +
Sbjct: 14 KCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.36
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K + C+ C +F + ++ H R H G KP S
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEH---HTNEKPFKCT 203
G+ ++C C + F + H H HT EKP +
Sbjct: 5 SSGMGEKCYKCDVCGKEF----SQSSHLQTHQRVHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
++ + C+ C + + +H R H+ G+KP +
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQ-RVHT-GEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
EK +KC +C + ++ L+ H R+H
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTH-QRVH 35
Score = 24.4 bits (54), Expect = 9.3
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G K +KC C +F SH+ R+H+ +K S
Sbjct: 5 SSGMGEKCYKCD----VCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.0 bits (69), Expect = 0.044
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 289 KPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
KPFKCS CEY +K LK+H+ R HS +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNR-HSTEK 36
Score = 27.2 bits (59), Expect = 1.1
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 107 TNDRPFSCNFCDYKSKTKYDITSHSLRKHSK 137
++ +PF C+ C+Y +++K ++ +H R ++
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 26.8 bits (58), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 198 KPFKCTLCSYKAKRNFELKQHILR 221
KPFKC+LC Y + LK H+ R
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNR 31
Score = 25.2 bits (54), Expect = 5.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 231 YHCTYCDYICSSRTILKSHINK 252
+ C+ C+Y S++ LK+H+N+
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNR 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.045
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C C F DN +H QR HT RP +
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
Score = 27.9 bits (63), Expect = 0.67
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F + CT+H HT ++P +
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGPS 44
Score = 27.5 bits (62), Expect = 0.94
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F H R H G +P S
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGPS 44
Score = 27.2 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C N QH R+H
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQH-QRLH 35
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C T H R H+ G +P +
Sbjct: 4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHT-GQRPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.045
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C+ C TFS L H QR HT ++P +
Sbjct: 14 GCNECGKTFSQKSILSAH-QRTHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.14
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F +K + H R H G KP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.84
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++P+ CN C K +++H R H+ G+KP +
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHT-GEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C+ C + F K+ + H HT EKP +
Sbjct: 5 SSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 9.1
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+ C C + L H R H
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAH-QRTH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.045
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
QR EC C F L H +R HT ++P +
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.65
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+P+ C C F K + H R+H G KP S
Sbjct: 11 RPYECIECGKAFKTKSSLICHR-RSHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T RP+ C C KTK + H R H+ G+KP +
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICHR-RSHT-GEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
GQ ++C C + F K+ H HT EKP +
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T ++P++C C K L H R H
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICH-RRSH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.046
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C F+ N L H QR HT ++P +
Sbjct: 14 QCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF CE C +F + + H R H G KP S
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.45
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ FQC C +RF + H HT EKP +
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.92
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKPF+C C + +N L H R+H
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
Score = 25.2 bits (56), Expect = 5.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KPF+C +C +F SH+ R+H+ +K S
Sbjct: 5 SSGSGEKPFQCE----ECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.6
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++PF C C + + SH R H+ G+KP +
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHT-GEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.048
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
ECS C +F L H QR HT + P +
Sbjct: 14 ECSDCGKSFIKKSQLHVH-QRIHTGENPSGPS 44
Score = 30.6 bits (70), Expect = 0.057
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F KK + +H R H G P S
Sbjct: 11 KPYECSDCGKSFIKKSQLHVH-QRIHTGENPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ ++CS C + F K++ H HT E P
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQ-RIHTGENPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
T ++P+ C+ C K + H R H+ G+ P
Sbjct: 4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQ-RIHT-GENPSGP 43
Score = 24.8 bits (55), Expect = 7.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C+ C + +L H RIH
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVH-QRIH 35
Score = 24.8 bits (55), Expect = 7.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP++CS C F KS + RIH+ +
Sbjct: 5 SSGTGEKPYECS----DCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.056
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F L H Q H+ ++P +
Sbjct: 14 KCNECGKAFRARSSLAIH-QATHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + +H H G KP S
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.74
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + + + H HS G+KP +
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIHQ-ATHS-GEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.8
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F ++ H H+ EKP +
Sbjct: 5 SSGTGEKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.2
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T EKP+KC C KA F + L IHQ
Sbjct: 7 GTGEKPYKCNECG-KA---FRARSS-LAIHQ 32
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.056
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C ++ +L H Q+ HT +RP +
Sbjct: 14 KCEKCGKGYNSKFNLDMH-QKVHTGERPSGPS 44
Score = 30.6 bits (70), Expect = 0.072
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ CE C + K+++ MH + H G +P S
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGPS 44
Score = 27.9 bits (63), Expect = 0.62
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C +K+++ H + H+ G++P +
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHT-GERPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFC 321
+ G KP+KC C +KF L H ++H+ ++
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C F L H ++H
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
Score = 26.3 bits (59), Expect = 2.0
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + + K H + HT E+P +
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 30.6 bits (70), Expect = 0.057
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C C F ++ + +H + H G KP S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C FS L H + HT ++P +
Sbjct: 14 KCVECGKGFSRRSALNVH-HKLHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.47
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C C + F ++ H+ + HT EKP +
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.56
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++PF C C + + H + H+ G+KP +
Sbjct: 4 GSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHT-GEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKPFKC C R L H ++H
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVH-HKLH 35
Score = 24.8 bits (55), Expect = 8.4
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KPFKC +C F +S + ++H+ +K
Sbjct: 5 SSGTGEKPFKCV----ECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.058
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C C F + +L +H QR HT ++P +
Sbjct: 14 VCDYCGKAFGLSAELVRH-QRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.39
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C++C F ++ H R H G KP S
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.2
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+ C C + EL +H RIH
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRH-QRIH 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C +C + F E +H HT EKP +
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++P+ C++C ++ H R H+ G+KP +
Sbjct: 4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQ-RIHT-GEKPSGPS 44
Score = 24.8 bits (55), Expect = 6.9
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+ C C FGL + + RIH+ +K
Sbjct: 5 SSGSGEKPYVCD----YCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.061
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C TF+ + L H QR HT ++P +
Sbjct: 14 KCNECKKTFTQSSSLTVH-QRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.27
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K F C C F + + +H R H G KP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.50
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C+ C + F + T H HT EKP +
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ F CN C +T H R H+ G+KP +
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHT-GEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.1
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+K FKC C ++ L H RIH
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
Score = 25.5 bits (57), Expect = 3.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G K FKC+ C+ K F S +T RIH+ +K S
Sbjct: 5 SSGAGKKLFKCNECK-KT---FTQSSSLTVHQRIHTGEKPSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.061
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
EC C TF L +H +R HT +R +
Sbjct: 14 ECKECRKTFIQIGHLNQH-KRVHTGERSSGPS 44
Score = 28.7 bits (65), Expect = 0.28
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F + + H R H G + S
Sbjct: 11 KPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ +KP++C C + L QH R+H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQH-KRVH 35
Score = 25.6 bits (57), Expect = 4.6
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ ++C C + F +H HT E+
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.062
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
EC +C FS + L +H QR H+ ++P +
Sbjct: 14 ECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.99
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F + H R H G KP S
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C +C + L QH R+H
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQ-RVH 35
Score = 25.2 bits (56), Expect = 5.6
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F T+H H+ EKP +
Sbjct: 5 SSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.9
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C +T H R HS G+KP +
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHS-GEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.065
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C + +DL H QR HT ++ +
Sbjct: 14 KCVECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
Score = 30.6 bits (70), Expect = 0.076
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C + ++ D+ H R H G K S
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGPS 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++P+ C C K + D+ H R H+ G+K +
Sbjct: 4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHT-GEKLSGPS 44
Score = 28.3 bits (64), Expect = 0.50
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+KC C KR +L H R+H
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFH-QRVH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + + + + H HT EK +
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGPS 44
Score = 24.8 bits (55), Expect = 8.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFC 321
+ G KP+KC C + L H R+H+ +K
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.066
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+ EC C FS L H QR H ++P +
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.22
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
P+ C C F +KY + H R H G KP S
Sbjct: 11 NPYECHECGKAFSRKYQLISH-QRTHAGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.27
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T + P+ C+ C KY + SH R H+ G+KP +
Sbjct: 4 GSSGTGENPYECHECGKAFSRKYQLISHQ-RTHA-GEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F K + H H EKP +
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQ-RTHAGEKPSGPS 44
Score = 25.5 bits (57), Expect = 3.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T E P++C C R ++L H R H
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISH-QRTH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.072
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C+ C F+ +L KH Q+ HT +P +
Sbjct: 14 ICAECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + ++ H + H KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ-KIHTKQKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C+ C + F ++ KH + HT +KP +
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQ-KIHTKQKPSGPS 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C + ++ H + H+ KP +
Sbjct: 4 GSSGTGEKPYICAECGKAFTIRSNLIKHQ-KIHT-KQKPSGPS 44
Score = 25.2 bits (56), Expect = 5.0
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+ C C L +H +IH
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKH-QKIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.074
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C C +FS L KH +R H+ ++P +
Sbjct: 14 NCKECGKSFSRAPCLLKH-ERLHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.25
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K + C+ C F + + H R H G KP S
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.39
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C C + F KH H+ EKP +
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EK + C C R L +H R+H
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHE-RLH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++ ++C C + H R HS G+KP +
Sbjct: 4 GSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHS-GEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.075
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F+ N L H QR HT +P +
Sbjct: 14 KCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 28.3 bits (64), Expect = 0.39
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H R H G+KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C +N L H RIH
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANH-QRIH 35
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + H HT KP +
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGPS 44
Score = 25.6 bits (57), Expect = 3.9
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + +H R H+ G KP +
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHT-GVKPSGPS 44
Score = 24.8 bits (55), Expect = 6.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP+KC+ +C F SH+ RIH+ K S
Sbjct: 5 SSGTGEKPYKCN----ECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.077
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ CE C + ++ ++ MH R H G K S
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGPS 44
Score = 29.0 bits (66), Expect = 0.25
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C ++ ++L H QR H ++ +
Sbjct: 14 KCEDCGKGYNRRLNLDMH-QRVHMGEKTSGPS 44
Score = 27.8 bits (63), Expect = 0.71
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+KC C R L H R+H
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
Score = 27.1 bits (61), Expect = 1.4
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
+ ++C C + + + H H EK +
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGPS 44
Score = 26.3 bits (59), Expect = 2.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++P+ C C + ++ H R H G+K +
Sbjct: 4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHM-GEKTSGPS 44
Score = 24.8 bits (55), Expect = 7.4
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ KP+KC C + + ++ R+H +K S
Sbjct: 5 SSGSVEKPYKCE----DCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.080
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C +C +F L H QR HT ++P +
Sbjct: 14 KCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.20
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F + +H R H G KP S
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.58
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F + + T H HT EKP +
Sbjct: 5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C + +T H R H+ G+KP +
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHT-GEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC +C + L H RIH
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
Score = 24.8 bits (55), Expect = 8.4
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+KC C F S +T RIH+ +K
Sbjct: 5 SSGTGEKPYKCD----VCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.081
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
EC+ C FS L H Q HT +P +
Sbjct: 14 ECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H H G KP S
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPS 44
Score = 26.0 bits (58), Expect = 2.9
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F ++ T H HT +KP +
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPS 44
Score = 25.6 bits (57), Expect = 3.7
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + +T+H H+ G KP +
Sbjct: 4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQ-AIHT-GKKPSGPS 44
Score = 24.8 bits (55), Expect = 7.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C C L H IH
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.083
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C+ C FC + + H H KP S
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C +C +F L +H HT ++P +
Sbjct: 14 KCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.88
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C C + F ++ +H HT EKP +
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKPFKC +C L +H +H
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++PF C+ C + + HS H+ +KP +
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHT-AEKPSGPS 44
Score = 25.1 bits (56), Expect = 6.2
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KPFKC C F +S + +H+ +K S
Sbjct: 5 SSGTGEKPFKCD----ICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.083
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C F+ N L H QR HT ++P +
Sbjct: 14 KCEECGKRFTQNSQLHSH-QRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF CE C +F + + H R H G KP S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.60
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C C +RF ++ H HT EKP +
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.86
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKPFKC C + +N +L H R+H
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSH-QRVH 35
Score = 25.9 bits (58), Expect = 3.1
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCT 145
+ ++PF C C K + L H + G+KP +
Sbjct: 4 GSSGSGEKPFKCEECG-----KRFTQNSQLHSHQRVHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.086
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+ +C+ C FS L +H QR HT ++P +
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.92
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H R H G KP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +P+ CN C + H R H+ G+KP +
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHT-GEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T KP++C C + +L +H R+H
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARH-QRVH 35
Score = 25.2 bits (56), Expect = 6.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G +QC+ C + F ++ +H HT EKP +
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.091
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
EC +C F+ L +H Q+ HT ++P +
Sbjct: 14 ECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.29
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F +K + H + H G KP S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F K +H + HT EKP +
Sbjct: 5 SSGTGEKPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C K + H + H+ G+KP +
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQ-KTHT-GEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.4
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C +CS + L QH + H
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQH-QKTH 35
Score = 24.8 bits (55), Expect = 8.9
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP++C C+ F K+H+ + H+ +K
Sbjct: 5 SSGTGEKPYECK----VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.2 bits (69), Expect = 0.091
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
EKP+KC C + + L+ H+ IH
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHV-LIH 34
Score = 28.3 bits (64), Expect = 0.36
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPF 291
KP+ CE C ++F + ++ H+ H G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHV-LIHTGSGPS 40
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFS 113
+C C + F L+ H HT P S
Sbjct: 13 KCETCGARFVQVAHLRAH-VLIHTGSGPSS 41
Score = 26.3 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
S + G KP+KC C + L++HV IH+
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHV-LIHTGSG 38
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 30.2 bits (69), Expect = 0.093
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C+ C FS N L +H Q+ HT ++P +
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.66
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EK +KC C RN +L QH +IH
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
Score = 27.5 bits (62), Expect = 0.72
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K + C C F + + H + H G KP S
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ R++C+ C + F ++ ++H + HT EKP +
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.3
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++ + CN C ++ H + H+ G+KP +
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHT-GEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 30.2 bits (69), Expect = 0.094
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
EC C FS L +H QR HT ++P +
Sbjct: 14 ECKECGKAFSQTTHLIQH-QRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.91
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F + + H R H G KP S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C C + L QH R+H
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQH-QRVH 35
Score = 26.3 bits (59), Expect = 2.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEH---HTNEKPFKCT 203
G+ ++C C + F T H ++H HT EKP +
Sbjct: 5 SSGTGEKPYECKECGKAF----SQTTHLIQHQRVHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 4.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C + H R H+ G+KP +
Sbjct: 4 GSSGTGEKPYECKECGKAFSQTTHLIQHQ-RVHT-GEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.095
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ CE C F + D+ H H G KP S
Sbjct: 11 KPYKCEECGKGFICRRDLYTHH-MVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C F DL H HT ++P +
Sbjct: 14 KCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.60
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F + + H+ HT EKP +
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTHH-MVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.3
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C + D+ +H H+ G+KP +
Sbjct: 4 GSSGTGEKPYKCEECGKGFICRRDLYTHH-MVHT-GEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.1
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C +L H +H
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTH-HMVH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.097
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C FS L +H QR HT ++P +
Sbjct: 14 KCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.83
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H R H G KP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C + +L +H RIH
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARH-QRIH 35
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F ++ +H HT EKP +
Sbjct: 5 SSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.9
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + H R H+ G+KP +
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHT-GEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+CS C +FS + L +H HT ++P +
Sbjct: 14 QCSECGKSFSGSYRLTQH-WITHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F Y + H H KP S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHW-ITHTREKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
EKP++C+ C ++ L QH H
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQH-WITH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
+G+ +QCS C + F T+H+ HT EKP +
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHW-ITHTREKPSGPS 44
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
++P+ C+ C Y +T H H+ +KP +
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHW-ITHT-REKPSGPS 44
Score = 25.2 bits (56), Expect = 6.3
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP++CS +C F +T H+ +K S
Sbjct: 5 SSGEGEKPYQCS----ECGKSFSGSYRLTQHWITHTREKPSGPSS 45
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.2 bits (69), Expect = 0.099
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
EC C FS L H Q+ H+ S
Sbjct: 14 ECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43
Score = 25.5 bits (57), Expect = 3.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 194 HTNEKPFKCTLCSYKA-KRNFELKQHILRIH 223
T E P++C C K R +L H + H
Sbjct: 7 GTGENPYECCECG-KVFSRKDQLVSH-QKTH 35
Score = 24.8 bits (55), Expect = 6.6
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKC 293
P+ C C F +K + H + H G
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQ-KTHSGQSGPSS 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.11
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C C +++ + L +H QR HT ++P +
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.36
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C C + ++ + H R H G KP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.67
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKPFKC C + L QH R+H
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQH-QRVH 35
Score = 27.5 bits (62), Expect = 0.91
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++PF C C + +T H R H+ G+KP +
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHT-GEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C C + + + T+H HT EKP +
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KPFKC +C + + H+T R+H+ +K
Sbjct: 5 SSGTGEKPFKCG----ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F+ N L +H +R HT +P +
Sbjct: 14 KCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H R H G KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGPS 44
Score = 26.3 bits (59), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C +N L +H R+H
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARH-RRVH 35
Score = 25.6 bits (57), Expect = 4.1
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + +H HT KP +
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + ++ H + H G KP S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQ-KIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
C+ C F+D +L H Q+ HT ++P
Sbjct: 14 RCAECGKAFTDRSNLFTH-QKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
T ++P+ C C + ++ +H + H+ G+KP
Sbjct: 4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQ-KIHT-GEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ ++C+ C + F ++ H + HT EKP
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQ-KIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.9
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C C L H +IH
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTH-QKIH 35
Score = 25.2 bits (56), Expect = 6.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCGS 323
+ G KP++C+ C T + L +H +IH+ +K S
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPSS 45
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
EC+ C F+ +L H QR HT + S
Sbjct: 14 ECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
Score = 27.8 bits (63), Expect = 0.54
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK-YFCG 322
+ G KP++C+ C+ TK L H R H+ + G
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVH-QRTHTGESGPSSG 44
Score = 27.8 bits (63), Expect = 0.56
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKC 293
KP+ C C F K ++ +H R H G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 0.77
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
T ++P+ CN C TK ++ H R H+ G+
Sbjct: 4 GSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHT-GESGPSS 43
Score = 25.9 bits (58), Expect = 3.1
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ ++C+ C + F K+ H HT E
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43
Score = 24.7 bits (55), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T EKP++C C KA F K + L +HQ
Sbjct: 7 GTGEKPYECNECQ-KA---FNTKSN-LMVHQ 32
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ EC+ C F+ L H Q+ HT ++P +
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K F C C F +K + MH + H G KP S
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQ-KIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.62
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G F+C+ C + F K+ + H + HT EKP +
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQ-KIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T + F C C K ++ H + H+ G+KP +
Sbjct: 4 GSSGTGGKHFECTECGKAFTRKSTLSMHQ-KIHT-GEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T K F+CT C R L H +IH
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMH-QKIH 35
Score = 24.8 bits (55), Expect = 7.7
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G K F+C+ +C F KS ++ +IH+ +K
Sbjct: 5 SSGTGGKHFECT----ECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
ECS C F+ L H QR H + S
Sbjct: 12 ECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 27.5 bits (62), Expect = 0.85
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCG 322
S G P++CS +C F K + R H+ + G
Sbjct: 2 SSGSSGENPYECS----ECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 26.3 bits (59), Expect = 2.0
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ ++CS C + F K++ H H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQ-RTHAGESGPSS 41
Score = 25.9 bits (58), Expect = 2.4
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKC 293
P+ C C F +K + H R H G
Sbjct: 9 NPYECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 25.9 bits (58), Expect = 3.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
+ + P+ C+ C K + SH R H+ G+
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQ-RTHA-GESGPSS 41
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ E P++C+ C R +L H R H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISH-QRTH 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F+ N L +H + HT ++P +
Sbjct: 14 KCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H H G KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C +N L +H IH
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 25.9 bits (58), Expect = 3.5
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + +H HT EKP +
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.4
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 100 KHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + H H+ G+KP +
Sbjct: 2 SS-GSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHT-GEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.9 bits (68), Expect = 0.13
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C+ C F + H+ R+H P S
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHL-RSHERTDPSGPS 44
Score = 28.3 bits (64), Expect = 0.41
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
+C C FS + L KH R H P
Sbjct: 14 QCKECGMNFSWSCSLFKH-LRSHERTDPSGP 43
Score = 26.8 bits (60), Expect = 1.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKPF+C C + L +H LR H
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKH-LRSH 35
Score = 24.9 bits (55), Expect = 6.7
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G+ FQC C F + KH L H P
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKH-LRSHERTDPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F L H R H+ ++ +
Sbjct: 14 KCNECGKGFGRRSHLAGH-LRLHSREKSSGPS 44
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+PF C C F ++ + H+ R H K S
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGPS 44
Score = 27.9 bits (63), Expect = 0.54
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ E+PFKC C R L H LR+H
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGH-LRLH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C+ C + F ++ H L H+ EK +
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSREKSSGPS 44
Score = 25.6 bits (57), Expect = 4.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G +PFKC+ +C FG +SH+ R+HS +K S
Sbjct: 5 SSGSGERPFKCN----ECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 25.6 bits (57), Expect = 4.7
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ +RPF CN C + + H LR HS +K +
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGH-LRLHS-REKSSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C+ C +F L +H +R HT ++P +
Sbjct: 14 ICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F +K + H R H G KP S
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C+ C + F K+ +H HT EKP +
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+ C C + L +H RIH
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRH-RRIH 35
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 100 KHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C K + H R H+ G+KP +
Sbjct: 2 SS-GSSGTGEKPYICNECGKSFIQKSHLNRHR-RIHT-GEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+ C+ +C F KSH+ RIH+ +K
Sbjct: 5 SSGTGEKPYICN----ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F N L +H QR HT ++P +
Sbjct: 14 KCNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.39
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + H R H G KP S
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.70
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C + N L +H RIH
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRH-QRIH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + ++H HT EKP +
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.8
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + ++ H R H+ G+KP +
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHT-GEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
EC+ C +FS + L H QR HT ++P
Sbjct: 14 ECAECGKSFSISSQLATH-QRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C C F + H R H G KP S
Sbjct: 11 KPFECAECGKSFSISSQLATHQ-RIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C+ C + F ++ H HT EKP +
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.0
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 100 KHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCT 145
T ++PF C C K S L H + G+KP +
Sbjct: 2 SS-GSSGTGEKPFECAECG-----KSFSISSQLATHQRIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKPF+C C + +L H RIH
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATH-QRIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 29.6 bits (67), Expect = 0.14
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFS 113
C C +F+ L H QR + P S
Sbjct: 13 LCGQCGKSFTQRGSLAVH-QRSCSQSGPSS 41
Score = 29.6 bits (67), Expect = 0.15
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFK 292
P+ C C F ++ + +H R+ P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQ-RSCSQSGPSS 41
Score = 26.1 bits (58), Expect = 2.5
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
S + G P+ C C T + L H R S
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQSG 38
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.14
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F K + +HM R H G KP S
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.36
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
CS C FS L H R H+ ++P
Sbjct: 14 GCSECGKAFSSKSYLIIH-MRTHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.65
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + CS C + F K+ H H+ EKP +
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
++P+ C+ C +K + H R HS G+KP +
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHS-GEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+ CS +C F KS++ R HS +K
Sbjct: 5 SSGAGEKPYGCS----ECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.14
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C+ C F+ N L +H + HT ++P +
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C +N L +H IH
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRH-RGIH 35
Score = 26.3 bits (59), Expect = 2.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H H G KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + +H HT EKP +
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGPS 44
Score = 24.7 bits (55), Expect = 8.7
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCT 145
T ++P+ CN C K + L +H G+KP +
Sbjct: 4 GSSGTGEKPYKCNECG-----KVFTQNSHLVRHRGIHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.15
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C+ C F+ N L +H + HT ++P +
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H H G KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T +KP+KC C +N L +H IH
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 25.9 bits (58), Expect = 3.2
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + +H HT EKP +
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 9.0
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T +P+ CN C + H H+ G+KP +
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHT-GEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.15
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C C F N H QR H+ ++P +
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.27
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF CE C F H R+H G KP S
Sbjct: 11 KPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.30
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C C + FY ++C H H+ EKP +
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.98
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++PF C C T SH R HS G+KP +
Sbjct: 4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHS-GEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKPFKC C N + H R H
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSH-QRSH 35
Score = 25.2 bits (56), Expect = 5.2
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQKYFCGSC 324
+ G KPFKC +C F S R HS +K S
Sbjct: 5 SSGSGEKPFKCE----ECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.16
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F+ N L H R HT ++P +
Sbjct: 14 KCNECGKVFTQNSHLTNH-WRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.87
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + T H+ HT EKP +
Sbjct: 5 SSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.92
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H R H G KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+KC C +N L H RIH
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
Score = 24.8 bits (55), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+KC+ +C F SH+T RIH+ +K
Sbjct: 5 SSGSGEKPYKCN----ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.5
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++P+ CN C +T+H R H+ G+KP +
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHT-GEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.16
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C C F+ +L +H QR HT ++P +
Sbjct: 14 RCGECGKAFAQKANLTQH-QRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.35
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F +K ++ H R H G KP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C K ++T H R H+ G+KP +
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHT-GEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP++C C + L QH RIH
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQH-QRIH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F K T+H HT EKP +
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 3.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP++C +C F K+++T RIH+ +K S
Sbjct: 5 SSGTGEKPYRCG----ECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +C +C F + L +H H+ +RP +
Sbjct: 5 SSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGPS 44
Score = 27.9 bits (63), Expect = 0.70
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC +C + + L QH +H
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQH-HSVH 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C+ C F + H H G +P S
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGPS 44
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEH---HTNEKPFKCT 203
G+ ++C C + F + H ++H H+ E+P +
Sbjct: 5 SSGTGEKPYKCQVCGKAF----RVSSHLVQHHSVHSGERPSGPS 44
Score = 25.2 bits (56), Expect = 5.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP+KC C F + SH+ +HS ++ S
Sbjct: 5 SSGTGEKPYKCQ----VCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 25.2 bits (56), Expect = 6.5
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C C + + H HS G++P +
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHS-GERPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C C F + L++H QR HT ++P +
Sbjct: 14 NCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.35
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ CE C F ++ H R H G KP S
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.74
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C C + F ++ +H HT EKP +
Sbjct: 5 SSGTGEKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+ C C + +L++H RIH
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQ-RIH 35
Score = 26.0 bits (58), Expect = 3.0
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCT 145
T ++P++C C K I L++H + G+KP +
Sbjct: 4 GSSGTGEKPYNCEECG-----KAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 9.2
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP+ C +C F S + RIH+ +K S
Sbjct: 5 SSGTGEKPYNCE----ECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.21
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C FSD++ L +H +R HT ++P +
Sbjct: 14 DCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.38
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C C F + H R H G KP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.67
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F C C + F +H HT EKP +
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.93
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKPF C C + L QH RIH
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQH-RRIH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++PF C C + H R H+ G+KP +
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHT-GEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.7
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KPF C C F + RIH+ +K S
Sbjct: 5 SSGTGEKPFDCI----DCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.21
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+P+ C C F + + H+ + H+ K S
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHL-KRHFREKSSGPS 44
Score = 28.3 bits (64), Expect = 0.39
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+R C+ C F + L +H ++H ++ +
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFREKSSGPS 44
Score = 27.9 bits (63), Expect = 0.70
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ E+P+ C C R+ L +H L+ H
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEH-LKRH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ +RP+ CN C + H L++H +K +
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHF-REKSSGPS 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQKYF 320
+ G +P+ C+ +C FG SH+ + H +K
Sbjct: 5 SSGSGERPYGCN----ECGKNFGRHSHLIEHLKRHFREKSS 41
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 71 RHMLKIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
++ EC+ C F L H +R H S
Sbjct: 2 SSG-SSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKC 144
+ ++P+ CN C K I L H + G
Sbjct: 4 GSSGSGEKPYECNEC-----GKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 25.2 bits (56), Expect = 5.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKC 293
KP+ C C F K + +H R H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHE-RTHAGVSGPSS 43
Score = 24.8 bits (55), Expect = 7.9
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCG 322
+ G KP++C+ +C F KS + R H+ G
Sbjct: 5 SSGSGEKPYECN----ECGKAFIWKSLLIVHERTHAGVSGPSSG 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.21
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C F N+ L H R HT ++P +
Sbjct: 14 KCKECGKAFRQNIHLASH-LRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.33
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KPF C+ C F + + H+ R H G KP S
Sbjct: 11 KPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.33
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKPFKC C ++N L H LRIH
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASH-LRIH 35
Score = 27.8 bits (63), Expect = 0.62
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ F+C C + F H HT EKP +
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++PF C C + + SH R H+ G+KP +
Sbjct: 4 GSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHT-GEKPSGPS 44
Score = 25.5 bits (57), Expect = 4.8
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KPFKC +C F H+ RIH+ +K S
Sbjct: 5 SSGSGEKPFKCK----ECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.8 bits (65), Expect = 0.23
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T KPF+C C R+ L H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHR-KRH 34
Score = 26.5 bits (59), Expect = 1.5
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 162 LKIHQGQTRFQCSFCDRRFYFKNECTKHYLEH 193
+ G FQC CDR F + H H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 2.1
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 104 RKHTNDRPFSCNFCD 118
R T +PF C CD
Sbjct: 4 RGSTGIKPFQCPDCD 18
Score = 25.0 bits (55), Expect = 5.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 259 DKPFTCEHCDSKFCKKYDMKMHMSR 283
KPF C CD F + + +H R
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 24.6 bits (54), Expect = 8.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 282 SRAHYGLKPFKCSFCE 297
+R G+KPF+C C+
Sbjct: 3 TRGSTGIKPFQCPDCD 18
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C C F N L +H Q HT ++P +
Sbjct: 14 KCHECGKVFRRNSHLARH-QLIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.48
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C +RN L +H IH
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARH-QLIH 35
Score = 27.4 bits (62), Expect = 0.75
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H H G KP S
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQ-LIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C C + F + +H HT EKP +
Sbjct: 5 SSGTGEKPYKCHECGKVFRRNSHLARHQ-LIHTGEKPSGPS 44
Score = 24.7 bits (55), Expect = 8.3
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ C+ C + + H H+ G+KP +
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARHQ-LIHT-GEKPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.29
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K TC+ C FC +++H R H G K S
Sbjct: 11 KSHTCDECGKNFCYISALRIHQ-RVHMGEKCSGPS 44
Score = 26.0 bits (58), Expect = 2.5
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+++ C C F L+ H QR H ++ +
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEKCSGPS 44
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.1 bits (72), Expect = 0.35
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 313 IHSNQKYFCGSCNFSCTSNTDLLEHVQTNHIIVGESSSRDFIIHSFVK 360
I + Y C CN ++ + L EH++++H + +I++ ++
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIR 158
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.3 bits (64), Expect = 0.36
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T+ K + C C R F L +H +IH
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRH-QKIH 35
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
++ C+ C F+ L +H Q+ HT S
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRH-QKIHTRKSGPSS 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 28.4 bits (64), Expect = 0.37
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
C+ C TFSDN L +H Q+ HT S
Sbjct: 12 SCAECKETFSDNNRLVQH-QKMHTVKSGPSS 41
Score = 27.7 bits (62), Expect = 0.78
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+ C C N L QH ++H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQ-KMH 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.39
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP++C C F + H+ R H S
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44
Score = 28.2 bits (64), Expect = 0.39
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+ C +C + L QH LR+H
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQH-LRVH 35
Score = 27.5 bits (62), Expect = 0.80
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ C++C F + L +H R HT + +
Sbjct: 5 SSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ + C+ C + F +H L HT E +
Sbjct: 5 SSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44
Score = 25.6 bits (57), Expect = 4.2
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ G KP+ C+ C F L +H+ R+H+ + S
Sbjct: 5 SSGTGEKPYSCN----VCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 25.2 bits (56), Expect = 6.2
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSK---GDKPHKCT 145
T ++P+SCN C K + S L +H + + +
Sbjct: 4 GSSGTGEKPYSCNVCG-----KAFVLSAHLNQHLRVHTQETLSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.39
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
++ K +C C L QH RIH
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQH-QRIH 35
Score = 27.5 bits (62), Expect = 0.73
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
K C C F K + H R H G KP S
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQ-RIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
+C C F+ L +H QR HT ++P
Sbjct: 14 QCHECGRGFTLKSHLNQH-QRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK 318
+ K +C +C F LKSH+ RIH+ +K
Sbjct: 4 GSSGSSTKSHQCH----ECGRGFTLKSHLNQHQRIHTGEK 39
Score = 25.6 bits (57), Expect = 4.3
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
QC C R F K+ +H HT EKP +
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 9.0
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 138 GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCS 174
K H+C C + K L H +IH G+ S
Sbjct: 9 STKSHQCHECGRGFTLKSHLNQH-QRIHTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.40
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
C+ C FS L H Q HT ++P +
Sbjct: 14 MCNECGKAFSVYSSLTTH-QVIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.87
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + H H G KP S
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G + C+ C + F + T H HT EKP
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
T +P+ CN C +T+H H+ G+KP
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHT-GEKPSGP 43
Score = 25.2 bits (56), Expect = 4.8
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T KP+ C C L H IH
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTH-QVIH 35
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.8 bits (66), Expect = 0.42
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 258 EDKPFTCEHCDSKFCKKYD-MKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSN 316
+ +C C + K + +K HM + F C C + + G+K HV H++
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Query: 317 QKYF 320
Sbjct: 89 LPSG 92
Score = 27.5 bits (60), Expect = 2.4
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 79 RQRNLECSLCDS-TFSDNMDLKKHIQRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHS 136
+ ++ C C + LKKH++ + F+C+ C + ++ + H + H+
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 26.4 bits (57), Expect = 7.0
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 252 KKH-ANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFK 292
KKH N + + FTC HC + MK H+ H L
Sbjct: 52 KKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.2 bits (64), Expect = 0.44
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSC 114
C+ C F L H R HT + S
Sbjct: 14 VCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKC 293
KP+ C C F K + +H R H G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKC 144
T +P+ CN C ++K + H+ R H+ G+
Sbjct: 4 GSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHT-GESGPSS 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCG 322
+ G+KP+ C+ +C F KS++ R H+ + G
Sbjct: 5 SSGTGMKPYVCN----ECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKC 202
G + C+ C + F K+ H HT E
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43
Score = 25.5 bits (57), Expect = 3.9
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIHQ 224
T KP+ C C KA F K + L IH
Sbjct: 7 GTGMKPYVCNECG-KA---FRSKSY-LIIHT 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.46
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+R CS C F + +H +R HT ++P +
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.70
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
+ C C F + + H R H G KP S
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
E+ +C+ C + QH RIH
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQH-RRIH 35
Score = 25.2 bits (56), Expect = 5.6
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ +CS C + F + +H HT EKP +
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.5
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFCGS 323
+ +G + +CS C F S+ RIH+ +K S
Sbjct: 5 SSGHGERGHRCS----DCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.9 bits (61), Expect = 0.47
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 289 KPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
K ++C +CE++ LK+H+ HS +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 26.3 bits (57), Expect = 1.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 231 YHCTYCDYICSSRTILKSHINKKHANDE 258
Y C YC++ + + LK+HI KH+ ++
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 24.4 bits (52), Expect = 9.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 110 RPFSCNFCDYKSKTKYDITSHSLRKHSK 137
+ + C +C+++S ++ +H KHSK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSK 28
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 27.9 bits (63), Expect = 0.52
Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFS 113
C C FS L H R HT P S
Sbjct: 13 RCDQCGKAFSQKGSLIVH-IRVHTGSGPSS 41
Score = 26.8 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPF 291
KP+ C+ C F +K + +H+ R H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHI-RVHTGSGPS 40
Score = 26.4 bits (59), Expect = 1.8
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
EKP++C C + L HI R+H
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHI-RVH 34
Score = 25.6 bits (57), Expect = 4.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQKYFCG 322
+ G KP++C C + K L H R+H+ G
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVHTGSGPSSG 42
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.56
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 75 KIHLRQRNLECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
++ +CS C F + L +H +R HT RP +
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPS 44
Score = 27.5 bits (62), Expect = 0.75
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ EKP+KC+ C R+ L +H RIH
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEH-RRIH 35
Score = 27.5 bits (62), Expect = 0.83
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F + + H R H G +P S
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGPS 44
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++CS C + F+ +H HT +P +
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGPS 44
Score = 24.8 bits (55), Expect = 6.9
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
+ ++P+ C+ C + H R H+ G +P +
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHT-GYRPSGPS 44
Score = 24.4 bits (54), Expect = 9.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 283 RAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK-YFC 321
+ G KP+KCS +C F +H+ RIH+ +
Sbjct: 5 SSGSGEKPYKCS----ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 28.5 bits (63), Expect = 0.56
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 88 CDSTFSDNMDLKKHIQRKH------TNDRPFSCNF--CDYKSKTKYDITSHSLRKH 135
C + S DL++H+ + H P +CN+ CD+ I +H +H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 0.57
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 244 TILKSHINKKHANDEDKPFTCEH--CDSKFCKKYDMKMHMSRAHYG 287
T+ + I+K DK F C C F ++Y+++ H+ + H
Sbjct: 1 TLPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI-QTHLE 45
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.9 bits (66), Expect = 0.62
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 169 TRFQCSFCDRRFYFKNECTKHYL-EHHTNEKPFKCTLCSYKAKRNFELKQHILRIHQDNI 227
+ QC C +++ HY H N+ + + + + D
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 228 EAEYHCTYCDYICSSRTILKSHIN-KKHA 255
+ C C+ SS + +SH K H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIGKTHI 119
Score = 26.8 bits (58), Expect = 5.7
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 81 RNLECSLCDSTFSDNMDLKKHIQ-RKH-TNDRPFSCNFCDYKSKTKYDITSHSLRKHSKG 138
+ +C +C + H Q RKH R + S +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 139 DKPHKCTICESTYLTKVELKNHIL-KIHQGQTR 170
D+ C +C T+ + V ++H + K H R
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLR 123
Score = 26.8 bits (58), Expect = 7.2
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 233 CTYCDYICSSRTILKSHIN-KKHANDEDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPF 291
C C + S + +H +KHAN + + K + +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 292 KCSFCEYKCTTKFGLKSH 309
C C ++ +SH
Sbjct: 95 CCPVCNMTFSSPVVAESH 112
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.65
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFSCN 115
+C+ C F + +L H Q HT ++P +
Sbjct: 14 KCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.70
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 260 KPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCS 294
KP+ C C F ++ H H G KP S
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQ-VIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCT 203
G+ ++C+ C + F + T H HT EKP +
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTHQ-VIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
T EKP+KC C + + L H IH
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTH-QVIH 35
Score = 26.3 bits (59), Expect = 2.2
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 103 QRKHTNDRPFSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCT 145
T ++P+ CN C + ++T+H H+ G+KP +
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQ-VIHT-GEKPSGPS 44
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.5 bits (61), Expect = 0.70
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
E PFKC+ C + L QH R H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQH-ERTH 35
Score = 26.7 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 284 AHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
+ G PFKCS C+ T + L H R H+ +
Sbjct: 6 SGAGENPFKCSKCDRVFTQRNYLVQH-ERTHARKS 39
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 30.7 bits (68), Expect = 0.86
Identities = 13/88 (14%), Positives = 29/88 (32%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRI 222
++ + C+FC +R F + E + + Y R ++ L +
Sbjct: 79 QVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYV 138
Query: 223 HQDNIEAEYHCTYCDYICSSRTILKSHI 250
+E E + + S ++L
Sbjct: 139 VDTCMEDEDLQALKESMQMSLSLLPPTA 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.99
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 45/134 (33%)
Query: 49 FE--QKLFSCDLCEYQTNTKIYIRRH--MLKIHLRQRNLECSLCDSTFSDNMDLKKHIQR 104
FE + L+ Y I+ L L + L+ + F+ +++ + ++
Sbjct: 170 FEELRDLYQ----TYHVLVGDLIKFSAETLS-ELIRTTLDA---EKVFTQGLNILEWLE- 220
Query: 105 KHTNDRP---------FSCNFCDYKSKTKYDITSHSLRKHSKGDKPHKCTICESTYLTKV 155
+ ++ P SC I L H + T
Sbjct: 221 -NPSNTPDKDYLLSIPISCPL----------IGVIQL--------AHYVVTAKLLGFTPG 261
Query: 156 ELKNHILKIHQGQT 169
EL++++ +G T
Sbjct: 262 ELRSYL----KGAT 271
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 107 TNDRPFSCNFCDYKSKTKYDITSHSLRKHS 136
++ +P+ C C Y S K ++ H LRKH+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVH-LRKHT 33
Score = 26.7 bits (58), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 289 KPFKCSFCEYKCTTKFGLKSHVTRIHSNQK 318
KP+KC C Y K L H+ + H+ +K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRK-HTGEK 36
Score = 24.4 bits (52), Expect = 8.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 195 TNEKPFKCTLCSYKAKRNFELKQHILR 221
++ KP+KC CSY + L H+ +
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 26.8 bits (60), Expect = 1.3
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 84 ECSLCDSTFSDNMDLKKHIQRKHTNDRPFS 113
EC C +F L H +R HT P S
Sbjct: 12 ECQECGKSFRQKGSLTLH-ERIHTGSGPSS 40
Score = 26.0 bits (58), Expect = 2.8
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
+ ++ ++C C ++ L H RIH
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH-ERIH 33
Score = 25.2 bits (56), Expect = 4.8
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 282 SRAHYGLKPFKCSFCEYKCTTKFGLKSHVT---RIHSNQK 318
S G + ++C +C F K +T RIH+
Sbjct: 2 SSGSSGQRVYECQ----ECGKSFRQKGSLTLHERIHTGSG 37
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 1.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 194 HTNEKPFKCTLCSYKAKRNFELKQHI 219
+ EKP+ C +C + KR + H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHV 30
Score = 26.4 bits (57), Expect = 2.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 165 HQGQTRFQCSFCDRRFYFKNECTKHYLEHH 194
G+ + C C RF K+ + H H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.7 bits (58), Expect = 1.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 255 ANDEDKPFTCEHCDSKFCKKYDMKMHMSRAH 285
D DKP+ C+ C ++ + + H + +H
Sbjct: 1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSH 31
Score = 25.5 bits (55), Expect = 4.7
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 196 NEKPFKCTLCSYKAKRNFELKQHILRIHQDNIEAE 230
+KP+ C +C + K L H H E E
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 27.3 bits (60), Expect = 2.0
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 128 TSHSLRKHSK---GDKPHKCTICESTYLTKVELKNHILKIHQGQTRFQCSFCDRRFYFKN 184
+S S K K GD+ KC+ C ++ + L C C + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEA 53
Query: 185 ECTKHYLEHHTNEKPF 200
K + + +K
Sbjct: 54 ALNKD-EGNESGKKTS 68
Score = 26.5 bits (58), Expect = 3.6
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 8/56 (14%)
Query: 163 KIHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQH 218
KIH G +CS C F + K C C + + L +
Sbjct: 11 KIHLGDRSQKCSKCGIIF--------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.0 bits (64), Expect = 2.4
Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 10/110 (9%)
Query: 181 YFKNECTKHYL----EHHTNEKPFKCTLCSYKAKRNFELKQHILRIH---QDNIEA--EY 231
+ E N + + ++N QH RI+ +I
Sbjct: 120 IVDKNNRYKSIDGSDETKANWMRYVVISREER-EQNLLAFQHSERIYFRACRDIRPGEWL 178
Query: 232 HCTYCDYICSSRTILKSHINKKHANDEDKPFTCEHCDSKFCKKYDMKMHM 281
Y + + ++ +K E + D++ +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 28.4 bits (63), Expect = 2.7
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 4/93 (4%)
Query: 164 IHQGQTRFQCSFCDRRFYFKNECTKHYLEHHTNEKPFKCTLCSYKAKRNFELKQHILRIH 223
G C C + F+ C L + + CT C +K E +
Sbjct: 10 CQNGGELLCCEKCPKVFHL--SCHVPTLTNFP-SGEWICTFCRDLSKPEVEYDCDAPSHN 66
Query: 224 QDNIEAEYHCTYCDYICSS-RTILKSHINKKHA 255
+ + E +L + +
Sbjct: 67 SEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMS 99
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 26.0 bits (56), Expect = 3.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 258 EDKPFTCEHCDSKFCKKYDMKMHMSRAH 285
+ F C CD +F ++ +K H + H
Sbjct: 7 GNGAFFCNECDCRFSEEASLKRHTLQTH 34
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 28.0 bits (63), Expect = 4.2
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 15 AFVSRLDDSYNFICILCNYHAENFE---NIYLHLPSHFEQKLFSCDL 58
A + +L + + + +L N + + Y + + S DL
Sbjct: 98 AIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDL 144
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR
{Crimean-congo hemorrhagic fever virus}
Length = 77
Score = 26.3 bits (57), Expect = 4.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 258 EDKPFTCEHCDSKFCKKYDMKMHMSRAHYGLKPFKCSFCEYKCTTKFGLKSHVTR 312
E KP TC C++ D +MH Y + C +C + T+ GL HVT+
Sbjct: 2 ELKPQTCTICETTPVNAIDAEMHDLNCSYNI----CPYCASRLTSD-GLARHVTQ 51
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.2 bits (54), Expect = 5.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 81 RNLECSLCDSTFSDNMDLKKHIQRKH 106
R+ C +C+ +FS++ +K HI+ H
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNH 33
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.2 bits (54), Expect = 5.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 136 SKGDKPHKCTICESTYLTKVELKNHILKIH 165
S G + C +C +++ + L++HI ++H
Sbjct: 2 SSGSSGYVCALCLKKFVSSIRLRSHIREVH 31
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.8 bits (54), Expect = 6.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 198 KPFKCTLCSYKAKRNFELKQHILRIHQDNI 227
K + C LC+ R L +H +IH N+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 24.7 bits (53), Expect = 7.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 284 AHYGLKPFKCSFCEYKCTTKFGLKSHVTRIHSN 316
G +PF C C TTK H+ ++H++
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHL-KVHTD 32
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics,
NPPSFA, national project on PR structural and functional
analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Length = 190
Score = 26.8 bits (59), Expect = 9.9
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 21 DDSYNFICILCNYHAENFENIYLHLPSHFEQKLFSCDLCEYQTNTKIYIRR 71
DD ++I E F + + L S QKL L E N I R
Sbjct: 66 DDMVHYIL-------ELFWHPDILLASSL-QKLLIARLVELLWNYGIEASR 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.136 0.442
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,510,204
Number of extensions: 314120
Number of successful extensions: 3051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2259
Number of HSP's successfully gapped: 1114
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.7 bits)