BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10080
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKHK 96
          C  C K +   Y L  HLR   G++P + C FC Y    KT + +H+   HK
Sbjct: 7  CSYCGKFFRSNYYLNIHLRTHTGEKPYK-CEFCEYAAAQKTSLRYHLERHHK 57


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
          Length = 87

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRL 93
          + CP C K ++   NL +H R   G++P + C  C       +D+  H R 
Sbjct: 5  YKCPECGKSFSQSSNLQKHQRTHTGEKPYK-CPECGKSFSQSSDLQKHQRT 54



 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEP 70
          + CP C K ++   +L +H R   G++P
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKP 60


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 30.0 bits (66), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPS 71
          C  CRK ++F   L+ H R+  G+ PS
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENPS 39


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
          Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
          Triplets
          Length = 190

 Score = 30.0 bits (66), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRL 93
          + CP C K ++ K +L RH R   G++P + C  C      + ++  H R 
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYK-CPECGKSFSQRANLRAHQRT 99



 Score = 28.9 bits (63), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 24  DDEKMLVPYNVDKEGKKTTWACPMCRKIYAFKYNLMRHLRVECGKEP 70
            D+K L  +     G+K  + CP C K ++ + NL  H R   G++P
Sbjct: 60  SDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKP 105



 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 43  WACPMCRKIYAFKYNLMRHLRVECGKEP 70
           + CP C K ++ + NL  H R   G++P
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKP 161



 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 43  WACPMCRKIYAFKYNLMRHLRVECGKEP 70
           +ACP C K ++   +L  H R   G++P
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP 133


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 30.0 bits (66), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 41 TTWACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMR 92
          +  AC +C KI+   Y+L RH     G++P   C  C  + K K  + +H+R
Sbjct: 6  SGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVR 56


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C +CRK ++   +L +H RV  G++PS
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPS 41


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Zinc Finger Protein 24
          Length = 72

 Score = 29.6 bits (65), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRL 93
          + C  C K ++    L++H RV  G++P + CL C       + +++H R+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYK-CLECGKAFSQNSGLINHQRI 64


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 29.3 bits (64), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K +A K NL +H R+  G++PS
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPS 41


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 28.5 bits (62), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 43 WACPMCRKIYAFKYNLMRHLRV 64
          + C  C K++ FK++L  HLR+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRI 31


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K +     L+RH R+  G++PS
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPS 41


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 40 KTTWACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          +  + C  C K ++ KY L+ H R   G++PS
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPS 41


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K++  K NL+ H ++  G+ PS
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C +C K +  + NL++H ++  G++PS
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPS 41


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C+K +  K NL+ H R   G++PS
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPS 41


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C +C K ++ + +L  H R+  GK+PS
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPS 41


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From
          The Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEP 70
          CP   K +  KY L+ H+RV  G++P
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP 90



 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 46  PMCRKIYAFKYNLMRHLRVECGKEPSQMCLF--CSYKCKHKTDIMHHMRL 93
           P C KI+A   NL  H R   G++P + C F  C  +  + +D   HM +
Sbjct: 96  PGCGKIFARSENLKIHKRTHTGEKPFK-CEFEGCDRRFANSSDRKKHMHV 144


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 37 EGKKTTWACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKHK 96
           G      C +C K ++ K  L  H+R   G +P + C  C Y     + +  H+R+   
Sbjct: 3  SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK-CKTCDYAAADSSSLNKHLRIHSD 61

Query: 97 E 97
          E
Sbjct: 62 E 62


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
          Zinc Finger Protein 32
          Length = 42

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++ K +L+ H+RV  G  PS
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 26.9 bits (58), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K +A K  L+ H R+  G++PS
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPS 41


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K++    +L RH RV  G +PS
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPS 41


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K Y  K+NL  H +V  G+ PS
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPS 41


>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
          Length = 360

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 39  KKTTWACPMCRKIYAFKYNLMRHLRVE 65
           KK TW CP+C K  A++  ++  L +E
Sbjct: 251 KKPTWICPVCDKKAAYESLILDGLFME 277


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          ++C  C K + FK  L+ H  V  G +PS
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKPS 39


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 26.2 bits (56), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++ K  L+ H R   G +PS
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++ K  L+ H+R   G++PS
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPS 41


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++    L RH RV  G++PS
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPS 41


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPS 71
          C  C K ++F   L+ H R+  G+ PS
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPS 41


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++   +L++H RV  G++PS
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPS 41


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCS 78
          + C +C K +  K++L+ H+++  G +P + C  C+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYE-CNICA 72


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 48  CRKIYAFKYNLMRHLRVECGKEPSQMCLF--CSYKCKHKTDIMHHM 91
           C K ++  +NL  H+R+  G  P  +C F  C+ K    T++  H+
Sbjct: 70  CGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHI 114


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKE 69
          + CP C    A K NL  HLR   G++
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
          Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 26 EKMLVPYNVDKEGKKTT----WACPMCRKIYAFKYNLMRHLRVECGKEPSQM--CLFCSY 79
          +K L  Y +    +K T    + CP C K Y  K NL+ H    C     Q+  C  C  
Sbjct: 15 KKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQE 74

Query: 80 KCKHKTDIMHHM 91
            + + ++  HM
Sbjct: 75 TFRRRMELRLHM 86


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
          Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 46 PMCRKIYAFKYNLMRHLRVECGKEPSQMCLF--CSYKCKHKTDIMHHMR 92
          P C K+Y    +L  HLR   G++P + C +  C ++     ++  H R
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYK-CTWEGCDWRFARSDELTRHYR 68


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K Y  + +L +H RV  G++PS
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPS 41


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K +  K +L RH R+  G++PS
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPS 41


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++    L RH R+  G++PS
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPS 41


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K++     L RH R+  G++PS
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPS 41


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPS 71
          + C  C K ++ + +L  H  +  GK+PS
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPS 41


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,211,430
Number of Sequences: 62578
Number of extensions: 113430
Number of successful extensions: 319
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 75
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)