RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10080
(101 letters)
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.1 bits (82), Expect = 4e-04
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 43 WACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKH 95
+ CP+C ++ +L +H+R E +++C C + + H+ KH
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 30.5 bits (69), Expect = 0.023
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 45 CPMCRKIYAFKYNLMRHLRV---ECGKEPSQMCLFCSYKCKHKTDIMHHMRLKHKE 97
C +C K +L H R C FC + + + H H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFP-CEFCGKRFEKPDSVAAHRSKSHPA 64
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 30.2 bits (69), Expect = 0.029
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKH 95
C C + K L H R+ C P C +CS+ K +++ HM+ K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-KF 60
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 28.9 bits (64), Expect = 0.063
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKHKE 97
C C L +H+R P C +C++ K K ++ HM+ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYH-CTYCNFSFKTKGNLTKHMKSKAHS 55
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 29.6 bits (66), Expect = 0.10
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 74 CLFCSYKCKHKTDIMHHMRLKHK 96
CLFC + H +L+H+
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQ 40
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 27.5 bits (62), Expect = 0.29
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 45 CPMCRKIYAFKYNLMRHLRV---ECGKEPSQMCLFCSYKCKHKTDIMHHMRLKH 95
C +C + + H+ E C C K+D+ H+R +H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVA-KFH-CPHCDTVIARKSDLGVHLRKQH 69
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 27.2 bits (61), Expect = 0.36
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 48 CRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKH 95
C K ++ L RH +V G + CS+ K T + H+ H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 0.39
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 41 TTWACPMCRKIYAFKYNLMRHLRVECGKE 69
+ C C K++ FK++L HLR+ ++
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.4
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 49 RKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMR 92
R I YN+ + + L Y H I HH++
Sbjct: 447 RSIVD-HYNIPKTF---DSDDLIPPYLD-QYFYSH---IGHHLK 482
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 24.9 bits (54), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 44 ACPMCRKIYAFKYNLMRHLRVECGKEP 70
AC +C KI+ Y+L RH G++P
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKP 40
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.8 bits (54), Expect = 2.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 36 KEGKKTTWAC--PMCRKIYAFKYNLMRHLR 63
KE T+ C P C K + +YN+ H++
Sbjct: 12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 2.2
Identities = 1/35 (2%), Positives = 10/35 (28%)
Query: 35 DKEGKKTTWACPMCRKIYAFKYNLMRHLRVECGKE 69
+ + ++ +L + + ++
Sbjct: 201 NLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 2.2
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 39 KKTTWACPMCRKI-YAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMRLKH 95
++ CP C + L +H+ V + + C C + K K + +H +H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.4 bits (52), Expect = 2.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 43 WACPMCRKIYAFKYNLMRHLRVECG 67
++C +C K ++ K+ + H RV G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 26.0 bits (56), Expect = 2.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 39 KKTTWACPMCRKIYAFK 55
+ TW CP+C+ A +
Sbjct: 285 QIPTWQCPVCQIDIALE 301
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.4 bits (53), Expect = 2.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEP 70
C C +++ + L++H R K
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 25.5 bits (55), Expect = 2.6
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 42 TWACPMCRKIYAFKYNLMRHLRVE---CGKEPSQMCLFCSYKCKHKTDIMHHMRLKH 95
+ C C H+ E S +C+ C++ K + H H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 24.7 bits (53), Expect = 4.4
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 74 CLFCSYKCKHKTDIMHHMRLKHKEFKIE 101
C +C+++ H+ +H +
Sbjct: 21 CKYCTFQTPDLNMFTFHVDSEHPNVVLN 48
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKH 83
C C K ++ KY L+ H R G++P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP--------SGPSS 45
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 24.4 bits (54), Expect = 3.7
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 45 CPMCRKIYAFKYNLMRHLRVEC--GKEPSQMCLFCSYKCKHKTDIMHHMRLKHK 96
C +C ++Y N RH + C FC + K ++ H+++ HK
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYP-CPFCFKEFTRKDNMTAHVKIIHK 65
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 24.8 bits (55), Expect = 4.2
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCK-------HKTDIMHHMR 92
CP C K + KY L H R G++P ++C K +++ H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP--------FECPKCGKCYFRKENLLEHEA 56
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen,
hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas
stutzeri} PDB: 2inn_A 2inp_A
Length = 511
Score = 25.1 bits (54), Expect = 4.9
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 52 YAFKYNLMRHLRVECGKEPSQMCLFCS-YKCKHKTDIMHHMRLKHKEF 98
+A + R G C + + +H H M +K F
Sbjct: 109 HAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHF 156
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 24.9 bits (55), Expect = 4.9
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCS-YKC-------KHKTDIMHHMR 92
C + ++ + L+ H+ +E P Q C +C K K +++H+R
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Score = 24.2 bits (53), Expect = 9.4
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKH 83
CP K + KY L+ H+RV G++P + C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP--------FPCPF 95
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 24.2 bits (52), Expect = 5.6
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYK--------CKHKTDIMHHMR 92
C + ++ + L+ H+ +E P Q C ++ K K +++H+R
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 24.5 bits (52), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 39 KKTTWACPMCRKIYAFK 55
KK TW CP+C K A++
Sbjct: 251 KKPTWICPVCDKKAAYE 267
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 7.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKH 83
C +C K ++ + +L H R+ GK+P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP--------SGPSS 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.432
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,473,044
Number of extensions: 70181
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 176
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)