RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10080
(101 letters)
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 27.9 bits (62), Expect = 0.13
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 74 CLFCSYKCKHKTDIMHHMRLKHK 96
CLFC + H +L+H+
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQ 40
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 26.2 bits (57), Expect = 0.26
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 48 CRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCKHKTDIMHHMR 92
C K + K RH+ + C C K K K ++ HM+
Sbjct: 8 CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 21.9 bits (46), Expect = 7.5
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 43 WACPMCRKIYAFKYNLMRHLRV 64
+ C +C K + K++L+ H+++
Sbjct: 31 YGCGVCGKKFKMKHHLVGHMKI 52
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.3 bits (53), Expect = 0.89
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCSYKCK 82
P C K + FK +L H+++ Y C+
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRD--------YICE 35
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 22.7 bits (48), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 44 ACPMCRKIYAFKYNLMRHLRVECGKEP 70
AC +C KI+ Y+L RH G++P
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKP 33
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.6 bits (49), Expect = 3.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECG 67
C C K ++ L++H RV G
Sbjct: 10 CVECGKAFSRSSILVQHQRVHTG 32
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 22.8 bits (48), Expect = 4.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 44 ACPMCRKIYAFKYNLMRHLRVECGKEP 70
CP+C + NL RHL + +P
Sbjct: 26 TCPICYAVIRQSRNLRRHLELRHFAKP 52
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (47), Expect = 5.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECG 67
CP C K + +L +H++
Sbjct: 5 CPECPKRFMRSDHLSKHIKTHQN 27
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 21.8 bits (47), Expect = 5.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECG 67
C +C + +A + +L RH R
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTN 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.9 bits (47), Expect = 6.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 45 CPMCRKIYAFKYNLMRHLRV 64
C C K + K L H +
Sbjct: 11 CSHCDKTFRQKQLLDMHFKR 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 21.9 bits (47), Expect = 6.8
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 45 CPMCRKIYAFKYNLMRHLR 63
C C K ++ +L H++
Sbjct: 8 CQSCGKGFSRPDHLNGHIK 26
Score = 21.9 bits (47), Expect = 7.2
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 73 MCLFCSYKCKHKTDIMHHMRLKH 95
+C C + H++ H
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVH 29
>d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide
3'-phosphodiesterase, catalytic domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 219
Score = 23.2 bits (50), Expect = 7.6
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 3 GDKSTDDVFG----EQDTGAQNSQDDDEKMLVPYNVDKEGKKTTWA 44
G + + GAQ ++ E L P ++DK +
Sbjct: 99 GKAFKLSISALFVTPKTAGAQVVLNEQELQLWPSDLDKPSSSESLP 144
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 21.4 bits (46), Expect = 7.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 45 CPMCRKIYAFKYNLMRHLRVECG 67
C +C + ++ +L H+R G
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTG 28
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 23.0 bits (49), Expect = 8.0
Identities = 8/81 (9%), Positives = 21/81 (25%), Gaps = 3/81 (3%)
Query: 19 QNSQDDDEKMLVPYNVDKEGKKTTWACPMCRKIYAFKYNLMRHLRVECGKEPSQMCLFCS 78
+ S Y G+K TW + + R+ + + + + +
Sbjct: 150 ERSYQRFTAF---YASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNT 206
Query: 79 YKCKHKTDIMHHMRLKHKEFK 99
+ ++K
Sbjct: 207 EDAYTVQQLTDSTQIKMDILA 227
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.3 bits (44), Expect = 9.1
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 74 CLFCSYKCKHKTDIMHHMRLKHKEFK 99
C +C ++ +++ H++ KH + K
Sbjct: 5 CQYCEFRSADSSNLKTHIKTKHSKEK 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.432
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,081
Number of extensions: 15174
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 59
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)