BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10089
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 156/260 (60%), Gaps = 9/260 (3%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP--VTDIKV 354
E +GE+PWM+A+L K N E CG +LI P VV+T AHCVN+ + IK+
Sbjct: 136 EAEYGEFPWMVAVL--KANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKI 193
Query: 355 RGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGL 414
R GEWDT+T ++E PYQER + Q+ IH NF KTV ND+AL++LD P ++IG
Sbjct: 194 RAGEWDTLT----EKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGT 249
Query: 415 ACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGV 474
C P ++ +D C +GWGK +FG RY + LKK+++ V R+ CQ LR TRLG
Sbjct: 250 ICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLK 309
Query: 475 FKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSD-TPGVYV 533
F L +F+CA G +D C GDGG PL C R+ Q+GIV+WGIGCG + PGVY
Sbjct: 310 FVLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYA 369
Query: 534 DVRKFKKWILDNSHGKIIDT 553
+V F+ WI K + T
Sbjct: 370 NVAHFRNWIDQEMQAKGLST 389
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 41 FGEFPWMLVLFYYKRNM------EYFKCGASLIGPNIALTAAHCV---QYDV-TYSVAAG 90
+GEFPWM+ + K N+ E CG SLI P++ LT AHCV Q ++ + AG
Sbjct: 139 YGEFPWMVAVL--KANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAG 196
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
EW + + Q R + V IH N++ +T+ N++ALL L + D I ICLP
Sbjct: 197 EW--DTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQ 254
Query: 151 WNVTYDSENCVITGWGR 167
+ +DS C +GWG+
Sbjct: 255 QSQIFDSTECFASGWGK 271
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 151 WNVTYDSENCVITGWGRDSADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLYDVT 210
W V N VI G G + GG L+ PS + C D
Sbjct: 144 WMVAVLKAN-VIPGSGEEQLVCGGSLIAPS-----------VVLTGAHCVNSYQSNLDAI 191
Query: 211 YSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ AGEW + + Q R + V IH N++ +T+ N++ALL L + D I
Sbjct: 192 -KIRAGEW--DTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIG 248
Query: 271 PICLPDWNVTYDSENCVITGWGR 293
ICLP + +DS C +GWG+
Sbjct: 249 TICLPQQSQIFDSTECFASGWGK 271
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 36/259 (13%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVR 355
E+ +GE+PW +++ +T CG +LI V+TAAHC + +P+ D+ ++
Sbjct: 6 ESSWGEWPWQVSLQVK-------LTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIY 58
Query: 356 GGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP---VKNHI 412
G + ++ T PF + +I IH+N++ +DIALI L P + I
Sbjct: 59 SGILEL--SDITKDTPFS----QIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPI 112
Query: 413 GLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLG 472
L +++ Y NC VTGWG K +G Q+ L+KV + LV CQ++ +
Sbjct: 113 SLPSKGDTSTIYT--NCWVTGWGFSK--EKGEIQNILQKVNIPLVTNEECQKRYQD---- 164
Query: 473 GVFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
+K+ +CA GG +DACKGD GGPLVC+ + VGI SWG GC +
Sbjct: 165 --YKITQRMVCAGYKEGG--KDACKGDSGGPLVCK---HNGMWRLVGITSWGEGCARREQ 217
Query: 529 PGVYVDVRKFKKWILDNSH 547
PGVY V ++ WIL+ +
Sbjct: 218 PGVYTKVAEYMDWILEKTQ 236
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHC---VQYDVTYSVAAG 90
+ G + +GE+PW + L K + CG SLIG LTAAHC + + + +G
Sbjct: 2 VGGTESSWGEWPWQVSL-QVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP- 149
++ I + ++ IH NY ++IAL+KL + +++ ++ PI LP
Sbjct: 61 ILELSDITKDTPFS----QIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPS 116
Query: 150 --DWNVTYDSENCVITGWGRDSADG 172
D + Y NC +TGWG G
Sbjct: 117 KGDTSTIYT--NCWVTGWGFSKEKG 139
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGW 291
+ ++ IH NY ++IAL+KL + +++ ++ PI LP D + Y NC +TGW
Sbjct: 75 QIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYT--NCWVTGW 132
Query: 292 G 292
G
Sbjct: 133 G 133
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 36/256 (14%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGE 358
+GE+PW +++ +T CG +LI V+TAAHC + +P+ D+ ++ G
Sbjct: 9 WGEWPWQVSLQVK-------LTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG- 60
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF---PVKNHIGLA 415
I N + P+ + + +I IH+N++ +DIALI L P + I L
Sbjct: 61 ---ILNLSDITKDTPFSQ--IKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLP 115
Query: 416 CTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
+++ Y NC VTGWG K +G Q+ L+KV + LV CQ++ + +
Sbjct: 116 SKGDTSTIYT--NCWVTGWGFSK--EKGEIQNILQKVNIPLVTNEECQKRYQD------Y 165
Query: 476 KLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGV 531
K+ +CA GG +DACKGD GGPLVC+ + VGI SWG GC + PGV
Sbjct: 166 KITQRMVCAGYKEGG--KDACKGDSGGPLVCK---HNGMWRLVGITSWGEGCARREQPGV 220
Query: 532 YVDVRKFKKWILDNSH 547
Y V ++ WIL+ +
Sbjct: 221 YTKVAEYMDWILEKTQ 236
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHC---VQYDVTYSVAAG 90
+ G N+ +GE+PW + L K + CG SLIG LTAAHC + + + +G
Sbjct: 2 VGGTNSSWGEWPWQVSL-QVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP- 149
++ I + ++ IH NY ++IAL+KL + +++ ++ PI LP
Sbjct: 61 ILNLSDITKDTPFS----QIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPS 116
Query: 150 --DWNVTYDSENCVITGWGRDSADG 172
D + Y NC +TGWG G
Sbjct: 117 KGDTSTIYT--NCWVTGWGFSKEKG 139
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGW 291
+ ++ IH NY ++IAL+KL + +++ ++ PI LP D + Y NC +TGW
Sbjct: 75 QIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYT--NCWVTGW 132
Query: 292 G 292
G
Sbjct: 133 G 133
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 127/259 (49%), Gaps = 25/259 (9%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP-VT 350
G SAE G +PWM+++ + + CG L+ H V+TAAHC N VT
Sbjct: 3 GGMSAEP--GAWPWMVSLQIFMYHNN----RRYHTCGGILLNSHWVLTAAHCFKNKKKVT 56
Query: 351 DIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKN 410
D ++ G + + + +P P QER V +I IHE + + NDIALI + P P
Sbjct: 57 DWRLIFGANEVVWGSNKPVKP-PLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGP 115
Query: 411 HIGLACTPN--SAEEYDDQNCIVTGWG--KDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
IG C P + Q C VTGWG K+K R TL++ V L+ +C
Sbjct: 116 FIGPGCLPQFKAGPPRAPQTCWVTGWGYLKEK---GPRTSPTLQEARVALIDLELCNS-- 170
Query: 467 RKTRLGGVFKLHDSFICASGGPNQ--DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGC 524
TR ++ + +CA G P D C+GD GGPL+C+ + E + F VGI SWG+GC
Sbjct: 171 --TRWYN-GRIRSTNVCA-GYPRGKIDTCQGDSGGPLMCRDRAE-NTFVVVGITSWGVGC 225
Query: 525 G-SDTPGVYVDVRKFKKWI 542
+ PGVY + WI
Sbjct: 226 ARAKRPGVYTSTWPYLNWI 244
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 91/241 (37%), Gaps = 67/241 (27%)
Query: 34 ISGRNTYFGEFPWM--LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ-------YDVT 84
+ G + G +PWM L +F Y N Y CG L+ + LTAAHC + + +
Sbjct: 2 VGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNKKKVTDWRLI 61
Query: 85 YSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 144
+ W N V Q R V ++ IH Y + N+IAL+K++ + +I
Sbjct: 62 FGANEVVWGSNKPV---KPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIG 118
Query: 145 PICLPDWNV--TYDSENCVITGWG-------RDS-------------------------- 169
P CLP + + C +TGWG R S
Sbjct: 119 PGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGRI 178
Query: 170 ------------------ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLYDVT 210
D GGPL+C + + TF VGI +W V C PG+Y T
Sbjct: 179 RSTNVCAGYPRGKIDTCQGDSGGPLMCRDRAE-NTFVVVGITSWGVGCARAKRPGVYTST 237
Query: 211 Y 211
+
Sbjct: 238 W 238
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV--TYDSENCVIT 289
Q R V ++ IH Y + N+IAL+K++ + +I P CLP + + C +T
Sbjct: 80 QERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVT 139
Query: 290 GWG 292
GWG
Sbjct: 140 GWG 142
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 135/308 (43%), Gaps = 44/308 (14%)
Query: 264 DFDDYIHPICLPDWNVTYDSE----------NC--VITGWGRDSAETFFGEYPWMMAILT 311
+F+ H C P N+ ++S+ +C ++ + E PWM +
Sbjct: 80 EFNGVRH-FCCPSANIQHNSKVMSLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRY 138
Query: 312 NKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW------DTITNN 365
+ E+ F CG +I ++TAAHCV+ + ++R GE D
Sbjct: 139 QQFG------ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQG 192
Query: 366 RTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYD 425
R + P + + IHE ++A+ + +DIAL+ L+ P + HI C P + E +
Sbjct: 193 RKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKE 252
Query: 426 DQNCI----VTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSF 481
I VTGWG + G L + V L PR+ C Q R+ + S
Sbjct: 253 KAEQISTYFVTGWGTTE---NGSSSDVLLQANVPLQPRSACSQAYRRA-------VPLSQ 302
Query: 482 ICASGGPNQDACKGDGGGPLVCQ---LKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVR 536
+C GG QD+CKGD GGPL L + + GIVS G + CG PG+Y +V
Sbjct: 303 LCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVG 362
Query: 537 KFKKWILD 544
++ +WI D
Sbjct: 363 EYVQWITD 370
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV---QYDVTYSVAAGEW 92
G PWM +L Y + F CG ++I LTAAHCV Q D+ Y + GE
Sbjct: 122 GYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDL-YEIRLGEH 180
Query: 93 FINGIVXXXXXXXQRR---DVLDV-----RIHPNYSTETLENNIALLKLSSNIDFDDYIH 144
I+ +++ V++V IH Y + ++IALLKL+ ++ F +I
Sbjct: 181 RISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIK 240
Query: 145 PICLPDWNVTYDSENCV----ITGWG 166
PICLP + + + +TGWG
Sbjct: 241 PICLPITDELKEKAEQISTYFVTGWG 266
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV----ITGWG 292
IH Y + ++IALLKL+ ++ F +I PICLP + + + +TGWG
Sbjct: 211 IHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWG 266
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 127/277 (45%), Gaps = 43/277 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIK 353
D T G+ PW + +L +K CGA LI P V+TAAHC++ +
Sbjct: 3 DGKMTRRGDSPWQVVLLDSK---------KKLACGAVLIHPSWVLTAAHCMDE--SKKLL 51
Query: 354 VRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIG 413
VR GE+D R ++ + + ++++H N+ T NDIAL+ L P + I
Sbjct: 52 VRLGEYDL---RRWEKWEL---DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIV 105
Query: 414 LACTPNSAEEYDD-----QNCIVTGWG----KDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
C P+S + Q +VTGWG ++K R L +++ +VP N C +
Sbjct: 106 PICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNR-TFVLNFIKIPVVPHNECSE 164
Query: 465 QLRKTRLGGVFKLHDSFICAS-GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG 523
+ + ++ +CA G QDAC+GD GGP+V + VG+VSWG G
Sbjct: 165 VMSNM-------VSENMLCAGILGDRQDACEGDSGGPMVASFHGT---WFLVGLVSWGEG 214
Query: 524 CG-SDTPGVYVDVRKFKKWILDNSHGKIIDTRIRTKN 559
CG GVY V ++ WI HG I D K+
Sbjct: 215 CGLLHNYGVYTKVSRYLDWI----HGHIRDKEAPQKS 247
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G+ T G+ PW +VL K+ + CGA LI P+ LTAAHC+ V GE+
Sbjct: 2 IDGKMTRRGDSPWQVVLLDSKKKL---ACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYD 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ D+ +V +HPNYS T +N+IALL L+ I PICLPD +
Sbjct: 59 LR----RWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 154 TYDSEN-----CVITGWGRDSA 170
N ++TGWG S+
Sbjct: 115 AERELNQAGQETLVTGWGYHSS 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-----CVIT 289
D+ +V +HPNYS T +N+IALL L+ I PICLPD + N ++T
Sbjct: 70 DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVT 129
Query: 290 GWGRDSAE 297
GWG S+
Sbjct: 130 GWGYHSSR 137
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 125/270 (46%), Gaps = 43/270 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIK 353
D T G+ PW + +L +K CGA LI P V+TAAHC++ +
Sbjct: 3 DGKMTRRGDSPWQVVLLDSK---------KKLACGAVLIHPSWVLTAAHCMDE--SKKLL 51
Query: 354 VRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIG 413
VR GE+D R ++ + + ++++H N+ T NDIAL+ L P + I
Sbjct: 52 VRLGEYDL---RRWEKWEL---DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIV 105
Query: 414 LACTPNSAEEYDD-----QNCIVTGWG----KDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
C P+S + Q +VTGWG ++K R L +++ +VP N C +
Sbjct: 106 PICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNR-TFVLNFIKIPVVPHNECSE 164
Query: 465 QLRKTRLGGVFKLHDSFICAS-GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG 523
+ + ++ +CA G QDAC+GD GGP+V + VG+VSWG G
Sbjct: 165 VMSNM-------VSENMLCAGILGDRQDACEGDSGGPMVASFHGT---WFLVGLVSWGEG 214
Query: 524 CG-SDTPGVYVDVRKFKKWILDNSHGKIID 552
CG GVY V ++ WI HG I D
Sbjct: 215 CGLLHNYGVYTKVSRYLDWI----HGHIRD 240
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G+ T G+ PW +VL K+ + CGA LI P+ LTAAHC+ V GE+
Sbjct: 2 IDGKMTRRGDSPWQVVLLDSKKKL---ACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYD 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ D+ +V +HPNYS T +N+IALL L+ I PICLPD +
Sbjct: 59 LR----RWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 154 TYDSEN-----CVITGWGRDSA 170
N ++TGWG S+
Sbjct: 115 AERELNQAGQETLVTGWGYHSS 136
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-----CVIT 289
D+ +V +HPNYS T +N+IALL L+ I PICLPD + N ++T
Sbjct: 70 DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVT 129
Query: 290 GWGRDSAE 297
GWG S+
Sbjct: 130 GWGYHSSR 137
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 121/261 (46%), Gaps = 37/261 (14%)
Query: 303 YPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD-IKVRGGEWDT 361
+PW AI G F CG LI V+TAAHC + D +KV G
Sbjct: 25 HPWQAAIFAQNRRSSG----ERFLCGGILISSCWVLTAAHCFQESYLPDQLKVVLG---- 76
Query: 362 ITNNRTDREPFPYQERT--VSQIYIHENFEAKTVFNDIALIILDFPFPV----KNHIGLA 415
RT R +E+T V + +H+ F+ T NDIAL+ L P + +
Sbjct: 77 ----RTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRAI 132
Query: 416 CTPNSAEEYDD-QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGV 474
C P + + D C ++G+GK K Y LK+ V+L P + C + +
Sbjct: 133 CLPEANLQLPDWTECELSGYGKHK-SSSPFYSEQLKEGHVRLYPSSRCAPKFLFNK---- 187
Query: 475 FKLHDSFICA----SGG--PN-QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-S 526
+ ++ +CA SG PN DAC+GD GGPLVC N T +GI+SWG+GCG
Sbjct: 188 -TVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCMNDN---HMTLLGIISWGVGCGEK 243
Query: 527 DTPGVYVDVRKFKKWILDNSH 547
D PGVY V + WI DN H
Sbjct: 244 DVPGVYTKVTNYLGWIRDNMH 264
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 63/163 (38%), Gaps = 34/163 (20%)
Query: 30 YIEP----ISGRNTYFGEFPWMLVLFYYKRNM--EYFKCGASLIGPNIALTAAHCVQYDV 83
Y EP G T PW +F R E F CG LI LTAAHC Q
Sbjct: 7 YKEPQLHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCFQESY 66
Query: 84 -----------TYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLK 132
TY V GE Q V +H + +T N+IALL+
Sbjct: 67 LPDQLKVVLGRTYRVKPGE------------EEQTFKVKKYIVHKEFDDDTYNNDIALLQ 114
Query: 133 LSSN----IDFDDYIHPICLPDWNVTY-DSENCVITGWGRDSA 170
L S+ D + ICLP+ N+ D C ++G+G+ +
Sbjct: 115 LKSDSPQCAQESDSVRAICLPEANLQLPDWTECELSGYGKHKS 157
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 241 IHPNYSTETLENNIALLKLSSN----IDFDDYIHPICLPDWNVTY-DSENCVITGWGR-D 294
+H + +T N+IALL+L S+ D + ICLP+ N+ D C ++G+G+
Sbjct: 97 VHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRAICLPEANLQLPDWTECELSGYGKHK 156
Query: 295 SAETFFGE 302
S+ F+ E
Sbjct: 157 SSSPFYSE 164
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 126/266 (47%), Gaps = 34/266 (12%)
Query: 292 GRDSAETFFGEYPWMMA--ILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVN-NIP 348
G+D+A G +PWM++ I T N+ V CG +L+ ++TAAHC
Sbjct: 4 GQDAAH---GAWPWMVSLQIFTYHNNRRYHV------CGGSLLNSQWLLTAAHCFRIKKK 54
Query: 349 VTDIKVRGG----EWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDF 404
VTD ++ G EW T N+ + P QER V +I IHE + A + NDIAL+ +
Sbjct: 55 VTDWRLIFGAKEVEWGT---NKPVKPPL--QERYVEKIIIHEKYSASSEANDIALMKITP 109
Query: 405 PFPVKNHIGLACTPN--SAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
P + IG C P + Q C V GWG + R L++ V L+ +C
Sbjct: 110 PVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENAR-RTSPMLQEARVDLIDLGLC 168
Query: 463 QQQLRKTRLGGVFKLHDSFICASGGPNQ--DACKGDGGGPLVCQLKNERDRFTQVGIVSW 520
TR ++ + +CA G P D C+GD GGPL+C+ E + + VGI SW
Sbjct: 169 N----STRWYN-GRIRSTNVCA-GYPEGKIDTCQGDSGGPLMCKDSAE-NSYVVVGITSW 221
Query: 521 GIGCG-SDTPGVYVDVRKFKKWILDN 545
G+GC + PGVY + WI
Sbjct: 222 GVGCARAKRPGVYTSTWSYLNWIASK 247
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 92/242 (38%), Gaps = 67/242 (27%)
Query: 34 ISGRNTYFGEFPWM--LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ-------YDVT 84
I G++ G +PWM L +F Y N Y CG SL+ LTAAHC + + +
Sbjct: 2 IGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLI 61
Query: 85 YSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 144
+ EW N V Q R V + IH YS + N+IAL+K++ + +I
Sbjct: 62 FGAKEVEWGTNKPVKPPL---QERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIG 118
Query: 145 PICLPDWNVTYDS--ENCVITGWG-------RDS-------------------------- 169
P CLP + + C + GWG R S
Sbjct: 119 PGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRI 178
Query: 170 ------------------ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLYDVT 210
D GGPL+C + ++ VGI +W V C PG+Y T
Sbjct: 179 RSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAE-NSYVVVGITSWGVGCARAKRPGVYTST 237
Query: 211 YS 212
+S
Sbjct: 238 WS 239
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS--ENCVIT 289
Q R V + IH YS + N+IAL+K++ + +I P CLP + + C +
Sbjct: 80 QERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVA 139
Query: 290 GWG 292
GWG
Sbjct: 140 GWG 142
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 115/260 (44%), Gaps = 33/260 (12%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVN-NIPVTDIKVRGGE 358
+PW AI G F CG LI +++AAHC P + V G
Sbjct: 9 IASHPWQAAIFAKHRRSPG----ERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGR 64
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPV----KNHIGL 414
+ + Q+ V + +H+ F+ T NDIAL+ L + +
Sbjct: 65 TYRVVPGEEE------QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRT 118
Query: 415 ACTPNSAEEYDD-QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
C P + + D C ++G+GK + + Y LK+ V+L P + C Q R
Sbjct: 119 VCLPPADLQLPDWTECELSGYGKHE-ALSPFYSERLKEAHVRLYPSSRCTSQHLLNR--- 174
Query: 474 VFKLHDSFICA----SGGPN---QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS 526
+ D+ +CA SGGP DAC+GD GGPLVC R T VGI+SWG+GCG
Sbjct: 175 --TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL---NDGRMTLVGIISWGLGCGQ 229
Query: 527 -DTPGVYVDVRKFKKWILDN 545
D PGVY V + WI DN
Sbjct: 230 KDVPGVYTKVTNYLDWIRDN 249
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 30/148 (20%)
Query: 41 FGEFPWMLVLFYYKRNM--EYFKCGASLIGPNIALTAAHCVQYDV-----------TYSV 87
PW +F R E F CG LI L+AAHC Q TY V
Sbjct: 9 IASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRV 68
Query: 88 AAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSN----IDFDDYI 143
GE Q+ +V +H + +T +N+IALL+L S+ +
Sbjct: 69 VPGE------------EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVV 116
Query: 144 HPICLPDWNVTY-DSENCVITGWGRDSA 170
+CLP ++ D C ++G+G+ A
Sbjct: 117 RTVCLPPADLQLPDWTECELSGYGKHEA 144
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSN----IDFDDYIHPICLPDWNVTY-DSENC 286
Q+ +V +H + +T +N+IALL+L S+ + +CLP ++ D C
Sbjct: 75 QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC 134
Query: 287 VITGWGRDSAET-FFGE---------YPWMMAILTNKINKDGSVTENVFQCGAT 330
++G+G+ A + F+ E YP + +N+ +VT+N+ G T
Sbjct: 135 ELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNR--TVTDNMLCAGDT 186
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 115/260 (44%), Gaps = 33/260 (12%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVN-NIPVTDIKVRGGE 358
+PW AI G F CG LI +++AAHC P + V G
Sbjct: 22 IASHPWQAAIFAKHRRSPG----ERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGR 77
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPV----KNHIGL 414
+ + Q+ V + +H+ F+ T NDIAL+ L + +
Sbjct: 78 TYRVVPGEEE------QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRT 131
Query: 415 ACTPNSAEEYDD-QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
C P + + D C ++G+GK + + Y LK+ V+L P + C Q R
Sbjct: 132 VCLPPADLQLPDWTECELSGYGKHE-ALSPFYSERLKEAHVRLYPSSRCTSQHLLNR--- 187
Query: 474 VFKLHDSFICA----SGGPN---QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS 526
+ D+ +CA SGGP DAC+GD GGPLVC R T VGI+SWG+GCG
Sbjct: 188 --TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL---NDGRMTLVGIISWGLGCGQ 242
Query: 527 -DTPGVYVDVRKFKKWILDN 545
D PGVY V + WI DN
Sbjct: 243 KDVPGVYTKVTNYLDWIRDN 262
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 45 PWMLVLFYYKRNM--EYFKCGASLIGPNIALTAAHCVQYDV-----------TYSVAAGE 91
PW +F R E F CG LI L+AAHC Q TY V GE
Sbjct: 26 PWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGE 85
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSN----IDFDDYIHPIC 147
Q+ +V +H + +T +N+IALL+L S+ + +C
Sbjct: 86 ------------EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVC 133
Query: 148 LPDWNVTY-DSENCVITGWGRDSA 170
LP ++ D C ++G+G+ A
Sbjct: 134 LPPADLQLPDWTECELSGYGKHEA 157
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSN----IDFDDYIHPICLPDWNVTY-DSENC 286
Q+ +V +H + +T +N+IALL+L S+ + +CLP ++ D C
Sbjct: 88 QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC 147
Query: 287 VITGWGRDSAET-FFGE---------YPWMMAILTNKINKDGSVTENVFQCGAT 330
++G+G+ A + F+ E YP + +N+ +VT+N+ G T
Sbjct: 148 ELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNR--TVTDNMLCAGDT 199
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 117/257 (45%), Gaps = 38/257 (14%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
GRD AE GE PW A+L N+ EN CG T++ V+TAAHC++
Sbjct: 4 GRDCAE---GECPWQ-ALLVNE--------ENEGFCGGTILNEFYVLTAAHCLHQAKRFT 51
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNH 411
++V + T++E V H F +T DIA++ L P + +
Sbjct: 52 VRV--------GDRNTEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRN 103
Query: 412 IGLACTPNS----AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR 467
+ AC P A + IV+G+G+ +GR STLK +EV V R+ C
Sbjct: 104 VAPACLPEKDWAEATLMTQKTGIVSGFGRTH--EKGRLSSTLKMLEVPYVDRSTC----- 156
Query: 468 KTRLGGVFKLHDSFICASGGPN-QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS 526
+L F + + CA +DAC+GD GGP V + K D + GIVSWG GC
Sbjct: 157 --KLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCAR 211
Query: 527 DTP-GVYVDVRKFKKWI 542
GVY V F KWI
Sbjct: 212 KGKFGVYTKVSNFLKWI 228
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR+ GE PW +L E F CG +++ LTAAHC+ ++V G+
Sbjct: 2 VGGRDCAEGECPWQALLV--NEENEGF-CGGTILNEFYVLTAAHCLHQAKRFTVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V H + ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ +++G+GR G
Sbjct: 115 AEATLMTQKTGIVSGFGRTHEKG 137
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGRDSAE 297
H + ET + +IA+L+L + I F + P CLP DW + +++G+GR +
Sbjct: 77 HSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEK 136
Query: 298 TFFGEYPWMMAI-----LTNKINKDGSVTENVFQCG 328
M+ + T K++ ++T N+F G
Sbjct: 137 GRLSSTLKMLEVPYVDRSTCKLSSSFTITPNMFCAG 172
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 21/223 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY---QERTVSQIY 383
CG +LI P V+TAAHCV D+K D RE Y Q VS+I
Sbjct: 29 CGGSLIHPQWVLTAAHCVG----PDVK------DLAALRVQLREQHLYYQDQLLPVSRII 78
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVE 442
+H F + DIAL+ L+ P V +H+ P ++E + C VTGWG
Sbjct: 79 VHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDER 138
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGP 500
LK+V+V ++ ++C + G V + D +CA G +D+C+GD GGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCA-GNTRRDSCQGDSGGP 197
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
LVC++ + Q G+VSWG GC + PG+Y V + WI
Sbjct: 198 LVCKVNGT---WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ ++PW + L + +F CG SLI P LTAAHCV DV A
Sbjct: 2 VGGQEAPRSKWPWQVSLRVHGPYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDLAAL---R 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ Q V + +HP + T + +IALL+L + ++H + LP +
Sbjct: 58 VQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 154 TY-DSENCVITGWGRDSADGGGPLVCPSKE 182
T+ C +TGWG D P P K+
Sbjct: 118 TFPPGMPCWVTGWGDVDNDERLPPPFPLKQ 147
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITG 290
Q V + +HP + T + +IALL+L + ++H + LP + T+ C +TG
Sbjct: 70 QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTG 129
Query: 291 WGR-DSAETFFGEYP 304
WG D+ E +P
Sbjct: 130 WGDVDNDERLPPPFP 144
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 21/223 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY---QERTVSQIY 383
CG +LI P V+TAAHCV D+K D RE Y Q VS+I
Sbjct: 29 CGGSLIHPQWVLTAAHCVG----PDVK------DLAALRVQLREQHLYYQDQLLPVSRII 78
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVE 442
+H F + DIAL+ L+ P V +H+ P ++E + C VTGWG
Sbjct: 79 VHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDER 138
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGP 500
LK+V+V ++ ++C + G V + D +CA G +D+C+GD GGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCA-GNTRRDSCQGDSGGP 197
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
LVC++ + Q G+VSWG GC + PG+Y V + WI
Sbjct: 198 LVCKVNGT---WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ ++PW + L + +F CG SLI P LTAAHCV DV A
Sbjct: 2 VGGQEAPRSKWPWQVSLRVHGPYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDLAAL---R 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ Q V + +HP + T + +IALL+L + ++H + LP +
Sbjct: 58 VQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 154 TY-DSENCVITGWGRDSADGGGPLVCPSKE 182
T+ C +TGWG D P P K+
Sbjct: 118 TFPPGMPCWVTGWGDVDNDERLPPPFPLKQ 147
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITG 290
Q V + +HP + T + +IALL+L + ++H + LP + T+ C +TG
Sbjct: 70 QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTG 129
Query: 291 WGR-DSAETFFGEYP 304
WG D+ E +P
Sbjct: 130 WGDVDNDERLPPPFP 144
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 21/223 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY---QERTVSQIY 383
CG +LI P V+TAAHCV D+K D RE Y Q VS+I
Sbjct: 29 CGGSLIHPQWVLTAAHCVG----PDVK------DLAALRVQLREQHLYYQDQLLPVSRII 78
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVE 442
+H F + DIAL+ L+ P V +H+ P ++E + C VTGWG
Sbjct: 79 VHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDER 138
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGP 500
LK+V+V ++ ++C + G V + D +CA G +D+C+GD GGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCA-GNTRRDSCQGDSGGP 197
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
LVC++ + Q G+VSWG GC + PG+Y V + WI
Sbjct: 198 LVCKVNGT---WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ ++PW + L + +F CG SLI P LTAAHCV DV A
Sbjct: 2 VGGQEAPRSKWPWQVSLRVHGPYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDLAAL---R 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ Q V + +HP + T + +IALL+L + ++H + LP +
Sbjct: 58 VQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 154 TY-DSENCVITGWGRDSADGGGPLVCPSKE 182
T+ C +TGWG D P P K+
Sbjct: 118 TFPPGMPCWVTGWGDVDNDERLPPPFPLKQ 147
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITG 290
Q V + +HP + T + +IALL+L + ++H + LP + T+ C +TG
Sbjct: 70 QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTG 129
Query: 291 WGR-DSAETFFGEYP 304
WG D+ E +P
Sbjct: 130 WGDVDNDERLPPPFP 144
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 27/257 (10%)
Query: 302 EYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI----KVRGG 357
E+PW T I S F CG +LI ++TAAHCV + + KVR G
Sbjct: 33 EFPW-----TAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLG 87
Query: 358 EWDTITNNR---TDREPFPYQ--ERTVSQIYIHENF--EAKTVFNDIALIILDFPFPVKN 410
EW+T T+ R P + + + + H ++ +K ++DIALI L+ N
Sbjct: 88 EWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTN 147
Query: 411 HIGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKT 469
+I C P EE Q V GWG+ + G+Y + +K+ V +V C KT
Sbjct: 148 YIRPVCLPQPNEEVQVGQRLTVVGWGRTE---TGQYSTIKQKLAVPVVHAEQCA----KT 200
Query: 470 RLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDT- 528
++ S +CA G +D+C GD GGPL+ + N+ +F G+VS+G CG++
Sbjct: 201 FGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQ--QFFLEGLVSFGATCGTEGW 258
Query: 529 PGVYVDVRKFKKWILDN 545
PG+Y V K++ WI N
Sbjct: 259 PGIYTKVGKYRDWIEGN 275
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 34 ISGRNTYFGEFPWMLVLFYY-KRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAA--- 89
++G +T EFPW ++ Y N E F CG SLI +TAAHCV V V A
Sbjct: 24 LNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNK 83
Query: 90 ---GEWFINGIVXXXXXXXQRRDVLDVRI---------HPNY--STETLENNIALLKLSS 135
GEW N R V D I HP+Y ++ ++IAL++L+
Sbjct: 84 VRLGEW--NTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNR 141
Query: 136 NIDFDDYIHPICLPDWNVTYD-SENCVITGWGR 167
++F +YI P+CLP N + + GWGR
Sbjct: 142 QVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGR 174
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 242 HPNY--STETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD-SENCVITGWGR 293
HP+Y ++ ++IAL++L+ ++F +YI P+CLP N + + GWGR
Sbjct: 120 HPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGR 174
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 122/256 (47%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + C P+
Sbjct: 61 --ILNQSEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 86/231 (37%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PICLP
Sbjct: 56 RVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PICLP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYT--DCWVTGWG 133
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 122/256 (47%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + C P+
Sbjct: 61 --ILNQAEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 86/231 (37%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PICLP
Sbjct: 56 RVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PICLP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYT--DCWVTGWG 133
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY---QERTVSQIY 383
CG +LI P V+TAAHCV D+K D T RE Y Q VS+I
Sbjct: 29 CGGSLIHPQWVLTAAHCVG----PDVK------DLATLRVQLREQHLYYQDQLLPVSRII 78
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVE 442
+H F DIAL+ L+ P + + + P ++E + C VTGWG
Sbjct: 79 VHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEP 138
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGP 500
LK+V+V ++ ++C + G V + D +CA G +D+CKGD GGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCA-GNSQRDSCKGDSGGP 197
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
LVC++ + Q G+VSWG GC + PG+Y V + WI
Sbjct: 198 LVCKVNGT---WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV----TYSVAA 89
+ G+ ++PW + L R +F CG SLI P LTAAHCV DV T V
Sbjct: 2 VGGQEAPRSKWPWQVSLRVRDRYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
E + Q V + +HP + +IALL+L ++ +H + LP
Sbjct: 61 REQHL-------YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 150 DWNVTY-DSENCVITGWGRDSADGGGPLVCPSKE 182
+ T+ C +TGWG D P P K+
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQ 147
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITG 290
Q V + +HP + +IALL+L ++ +H + LP + T+ C +TG
Sbjct: 70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTG 129
Query: 291 WGR-DSAETFFGEYP 304
WG D+ E +P
Sbjct: 130 WGDVDNDEPLPPPFP 144
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 167 RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLYD-VTY 211
RDS D GGPLVC T+ Q G+ +W C P+ PG+Y VTY
Sbjct: 187 RDSCKGDSGGPLVCKVN---GTWLQAGVVSWGEGCAQPNRPGIYTRVTY 232
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 121/256 (47%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N E + V +I IH+ ++ DIAL+ L+ + C P+
Sbjct: 61 --ILNQAEIAEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 86/231 (37%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PICLP
Sbjct: 56 RVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PICLP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYT--DCWVTGWG 133
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY---QERTVSQIY 383
CG +LI P V+TAAHCV D+K D T RE Y Q VS+I
Sbjct: 29 CGGSLIHPQWVLTAAHCVG----PDVK------DLATLRVQLREQHLYYQDQLLPVSRII 78
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVE 442
+H F DIAL+ L+ P + + + P ++E + C VTGWG
Sbjct: 79 VHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEP 138
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGP 500
LK+V+V ++ ++C + G V + D +CA G +D+C+GD GGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCA-GNSQRDSCQGDSGGP 197
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
LVC++ + Q G+VSWG GC + PG+Y V + WI
Sbjct: 198 LVCKVNGT---WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV----TYSVAA 89
+ G+ ++PW + L R +F CG SLI P LTAAHCV DV T V
Sbjct: 2 VGGQEAPRSKWPWQVSLRVRDRYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
E + Q V + +HP + +IALL+L ++ +H + LP
Sbjct: 61 REQHL-------YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 150 DWNVTY-DSENCVITGWGRDSADGGGPLVCPSKE 182
+ T+ C +TGWG D P P K+
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQ 147
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITG 290
Q V + +HP + +IALL+L ++ +H + LP + T+ C +TG
Sbjct: 70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTG 129
Query: 291 WGR-DSAETFFGEYP 304
WG D+ E +P
Sbjct: 130 WGDVDNDEPLPPPFP 144
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 167 RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLYD-VTY 211
RDS D GGPLVC T+ Q G+ +W C P+ PG+Y VTY
Sbjct: 187 RDSCQGDSGGPLVCKVN---GTWLQAGVVSWGEGCAQPNRPGIYTRVTY 232
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + C P+
Sbjct: 61 --ILNQAEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG + + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYR--ALRDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 86/231 (37%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PICLP
Sbjct: 56 RVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PICLP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYT--DCWVTGWG 133
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 34/260 (13%)
Query: 287 VITGWGR--DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV 344
V++G R + E G +PW +++ +K G CG +LI + V+TAAHC
Sbjct: 9 VLSGLSRIVNGEEAVPGSWPWQVSLQ----DKTG-----FHFCGGSLINENWVVTAAHC- 58
Query: 345 NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDF 404
+ +D+ V GE+D +++ Q+ +++++ + + + T+ NDI L+ L
Sbjct: 59 -GVTTSDV-VVAGEFDQGSSSE------KIQKLKIAKVFKNSKYNSLTINNDITLLKLST 110
Query: 405 PFPVKNHIGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQ 463
+ C P++++++ C+ TGWG ++ L++ + L+ C+
Sbjct: 111 AASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY-TNANTPDRLQQASLPLLSNTNCK 169
Query: 464 QQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG 523
+ K+ D+ ICA G +C GD GGPLVC+ + +T VGIVSWG
Sbjct: 170 KYWGT-------KIKDAMICA-GASGVSSCMGDSGGPLVCK---KNGAWTLVGIVSWGSS 218
Query: 524 -CGSDTPGVYVDVRKFKKWI 542
C + TPGVY V W+
Sbjct: 219 TCSTSTPGVYARVTALVNWV 238
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 64/225 (28%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYS--VAAGE 91
++G G +PW + L + + CG SLI N +TAAHC VT S V AGE
Sbjct: 17 VNGEEAVPGSWPWQVSL---QDKTGFHFCGGSLINENWVVTAAHC---GVTTSDVVVAGE 70
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
F G Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP
Sbjct: 71 -FDQG---SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSA 126
Query: 152 NVTYDS-ENCVITGWG----------------------------------RDS------- 169
+ + + CV TGWG +D+
Sbjct: 127 SDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS 186
Query: 170 ------ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVCTPDMPGLY 207
D GGPLVC + + VGI +W S C+ PG+Y
Sbjct: 187 GVSSCMGDSGGPLVC---KKNGAWTLVGIVSWGSSTCSTSTPGVY 228
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVITG 290
Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP + + + CV TG
Sbjct: 81 QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTG 140
Query: 291 WG 292
WG
Sbjct: 141 WG 142
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 121/256 (47%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + P+
Sbjct: 61 --ILNQSEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
E Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGERNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 85/231 (36%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 56 RVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
+ NV Y +C +TGWG RD
Sbjct: 116 SKGERNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PI LP + NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYT--DCWVTGWG 133
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 112/236 (47%), Gaps = 33/236 (13%)
Query: 327 CGATLILPHVVMTAAHCV------NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
CGA+LI V+TAAHC+ N V D+ VR G+ ++RT E + +
Sbjct: 28 CGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGK-----HSRTRYERKVEKISMLD 82
Query: 381 QIYIHENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNC----IVTGWG 435
+IYIH + K + DIAL+ L P + ++I C P+ + VTGWG
Sbjct: 83 KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
Query: 436 KDK----FGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ- 490
+ V S L+ V + LV R VC+ R ++ D+ CA P +
Sbjct: 143 NRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR-------IRITDNMFCAGYKPGEG 195
Query: 491 ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
DAC+GD GGP V + +R+ Q+GIVSWG GC D G Y V + KKWI
Sbjct: 196 KRGDACEGDSGGPFVMK-SPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 18/146 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQY---DVTYSVAAG 90
+ G++ G PW ++LF +++ + CGASLI LTAAHC+ Y D ++V
Sbjct: 2 VEGQDAEVGLSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDD- 58
Query: 91 EWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIH 144
+ I +R+ +LD + IHP Y+ E L+ +IALLKL I+ DYIH
Sbjct: 59 --LLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 116
Query: 145 PICLPD----WNVTYDSENCVITGWG 166
P+CLPD + + +TGWG
Sbjct: 117 PVCLPDKQTAAKLLHAGFKGRVTGWG 142
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IALLKL I+ DYIHP+CLPD + + +TGWG
Sbjct: 84 IYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 112/236 (47%), Gaps = 33/236 (13%)
Query: 327 CGATLILPHVVMTAAHCV------NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
CGA+LI V+TAAHC+ N V D+ VR G+ ++RT E + +
Sbjct: 28 CGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGK-----HSRTRYERKVEKISMLD 82
Query: 381 QIYIHENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEE----YDDQNCIVTGWG 435
+IYIH + K + DIAL+ L P + ++I C P+ + VTGWG
Sbjct: 83 KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
Query: 436 KDK----FGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ- 490
+ V S L+ V + LV R VC+ R ++ D+ CA P +
Sbjct: 143 NRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR-------IRITDNMFCAGYKPGEG 195
Query: 491 ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
DAC+GD GGP V + +R+ Q+GIVSWG GC D G Y V + KKWI
Sbjct: 196 KRGDACEGDSGGPFVMK-SPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 18/146 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQY---DVTYSVAAG 90
+ G++ G PW ++LF +++ + CGASLI LTAAHC+ Y D ++V
Sbjct: 2 VEGQDAEVGLSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDD- 58
Query: 91 EWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIH 144
+ I +R+ +LD + IHP Y+ E L+ +IALLKL I+ DYIH
Sbjct: 59 --LLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 116
Query: 145 PICLPD----WNVTYDSENCVITGWG 166
P+CLPD + + +TGWG
Sbjct: 117 PVCLPDKQTAAKLLHAGFKGRVTGWG 142
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IALLKL I+ DYIHP+CLPD + + +TGWG
Sbjct: 84 IYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 47 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 100
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 101 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 153
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 154 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDAGG 202
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 203 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 243
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L + M + CG +LI P LTAAHC++ +Y V I+
Sbjct: 32 WPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 79
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N V D
Sbjct: 80 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 138
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 139 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 199 DAGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 233
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 100 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 145
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 32/248 (12%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRG 356
E G +PW +++ +K G CG +LI + V+TAAHC + +D+ V
Sbjct: 6 EAVPGSWPWQVSLQ----DKTG-----FHFCGGSLINENWVVTAAHC--GVTTSDV-VVA 53
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
GE+D +++ Q+ +++++ + + + T+ NDI L+ L + C
Sbjct: 54 GEFDQGSSSE------KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVC 107
Query: 417 TPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
P++++++ C+ TGWG ++ L++ + L+ C++
Sbjct: 108 LPSASDDFAAGTTCVTTGWGLTRY-TNANTPDRLQQASLPLLSNTNCKKYWGT------- 159
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGSDTPGVYVD 534
K+ D+ ICA G +C GD GGPLVC+ + +T VGIVSWG C + TPGVY
Sbjct: 160 KIKDAMICA-GASGVSSCMGDSGGPLVCK---KNGAWTLVGIVSWGSSTCSTSTPGVYAR 215
Query: 535 VRKFKKWI 542
V W+
Sbjct: 216 VTALVNWV 223
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 64/225 (28%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYS--VAAGE 91
++G G +PW + L + + CG SLI N +TAAHC VT S V AGE
Sbjct: 2 VNGEEAVPGSWPWQVSL---QDKTGFHFCGGSLINENWVVTAAHC---GVTTSDVVVAGE 55
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
F G Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP
Sbjct: 56 -FDQG---SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSA 111
Query: 152 NVTYDS-ENCVITGWG----------------------------------RDS------- 169
+ + + CV TGWG +D+
Sbjct: 112 SDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS 171
Query: 170 ------ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVCTPDMPGLY 207
D GGPLVC + + VGI +W S C+ PG+Y
Sbjct: 172 GVSSCMGDSGGPLVC---KKNGAWTLVGIVSWGSSTCSTSTPGVY 213
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVITG 290
Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP + + + CV TG
Sbjct: 66 QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTG 125
Query: 291 WG 292
WG
Sbjct: 126 WG 127
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 44 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 97
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 98 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 150
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 151 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDAGG 199
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 200 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L + M + CG +LI P LTAAHC++ +Y V I+
Sbjct: 29 WPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 76
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N V D
Sbjct: 77 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 135
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 136 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 196 DAGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 230
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 97 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 142
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 43 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFL- 95
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 96 -----EPTRKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQGTFGA- 149
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 150 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDSGG 198
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 199 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 239
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 80/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L R ++F CG +LI P LTAAHC++ +Y V I+
Sbjct: 28 WPWQVSL--RTRFGQHF-CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 75
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N + D
Sbjct: 76 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTE 134
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 135 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 194
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 195 DSGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N + D C ITGWG
Sbjct: 96 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWG 141
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 397 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 447
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + C P+
Sbjct: 448 --ILNQSEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPS 503
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + + Q+TL+K ++ LV CQ++ R K
Sbjct: 504 KGDRNVIYTD--CWVTGWGYRK--LRDKIQNTLQKAKIPLVTNEECQKRYRG------HK 553
Query: 477 LHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 554 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 608
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 609 TNVVEYVDWILEKTQA 624
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 389 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 442
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PICLP
Sbjct: 443 RVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP 502
Query: 150 ---DWNVTYDSENCVITGWG 166
D NV Y +C +TGWG
Sbjct: 503 SKGDRNVIYT--DCWVTGWG 520
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PICLP D NV Y +C +TGWG
Sbjct: 463 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYT--DCWVTGWG 520
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 45 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 98
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 99 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 151
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 152 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDAGG 200
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 201 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 241
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L + M + CG +LI P LTAAHC++ +Y V I+
Sbjct: 30 WPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 77
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N V D
Sbjct: 78 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 136
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 137 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 196
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 197 DAGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 231
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 98 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 143
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 46 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 99
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 100 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 152
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 153 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDAGG 201
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 202 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 242
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L + M + CG +LI P LTAAHC++ +Y V I+
Sbjct: 31 WPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 78
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N V D
Sbjct: 79 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 137
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 138 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 197
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 198 DAGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 232
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 99 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 144
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 47 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 100
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 101 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 153
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 154 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDSGG 202
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 203 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 243
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L + M + CG +LI P LTAAHC++ +Y V I+
Sbjct: 32 WPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 79
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N V D
Sbjct: 80 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 138
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 139 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 199 DSGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 233
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 100 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 145
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 44 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 97
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 98 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 150
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 151 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDSGG 199
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 200 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAGEWFINGIVXX 100
+PW + L + M + CG +LI P LTAAHC++ +Y V I+
Sbjct: 29 WPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV---------ILGA 76
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSEN 159
V ++ + + E +IALLKLSS D + P CLP N V D
Sbjct: 77 HQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 135
Query: 160 CVITGWGRD-------------------------------------------------SA 170
C ITGWG
Sbjct: 136 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 171 DGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 196 DSGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 230
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 97 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 142
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 112/236 (47%), Gaps = 33/236 (13%)
Query: 327 CGATLILPHVVMTAAHCV------NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
CGA+LI V+TAAHC+ N V D+ VR G+ ++RT E + +
Sbjct: 77 CGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGK-----HSRTRYERKVEKISMLD 131
Query: 381 QIYIHENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEE----YDDQNCIVTGWG 435
+IYIH + K + DIAL+ L P + ++I C P+ + VTGWG
Sbjct: 132 KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 191
Query: 436 KDK----FGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ- 490
+ V S L+ V + LV R VC+ R ++ D+ CA P +
Sbjct: 192 NRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR-------IRITDNMFCAGYKPGEG 244
Query: 491 ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
DAC+GD GGP V + +R+ Q+GIVSWG GC D G Y V + KKWI
Sbjct: 245 KRGDACEGDSGGPFVMK-SPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 299
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G++ G PW ++LF +++ + CGASLI LTAAH
Sbjct: 35 DQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 92
Query: 78 CVQY---DVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNI 128
C+ Y D ++V + I +R+ +LD + IHP Y+ E L+ +I
Sbjct: 93 CLLYPPWDKNFTVDD---LLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDI 149
Query: 129 ALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 166
ALLKL I+ DYIHP+CLPD + + +TGWG
Sbjct: 150 ALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 191
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IALLKL I+ DYIHP+CLPD + + +TGWG
Sbjct: 133 IYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 191
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + P+
Sbjct: 61 --ILNQSEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 56 RVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PI LP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYT--DCWVTGWG 133
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 121/255 (47%), Gaps = 36/255 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N +E + V +I IH+ ++ DIAL+ L+ + P+
Sbjct: 61 --ILNQAEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSH 547
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQ 236
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 56 RVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PI LP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYT--DCWVTGWG 133
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 588 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFL- 640
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 641 -----EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 694
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
LK+ ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 695 ----GLLKEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDSGG 743
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 744 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 784
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 75/215 (34%), Gaps = 64/215 (29%)
Query: 44 FPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXX 103
+PW + L + CG +LI P LTAAHC++ S I G
Sbjct: 573 WPWQVSL---RTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYK---VILGAHQEVNL 626
Query: 104 XXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVI 162
+++ R+ E +IALLKLSS D + P CLP N V D C I
Sbjct: 627 EPHVQEIEVSRLF----LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFI 682
Query: 163 TGWGRD-------------------------------------------------SADGG 173
TGWG D G
Sbjct: 683 TGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSG 742
Query: 174 GPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
GPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 743 GPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 774
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWG 292
E +IALLKLSS D + P CLP N V D C ITGWG
Sbjct: 641 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWG 686
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 120/269 (44%), Gaps = 37/269 (13%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + G F CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFAKHRRSPGER----FLCGASLISDRWVLTAAHCLLYPPWDKNF 58
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 59 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 113
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 114 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 173
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 174 RPVCKDSTR-------IRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 225
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 226 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 254
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNM--EYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGE 91
+ G + G PW ++LF R E F CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 61
Query: 92 WFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHP 145
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP
Sbjct: 62 DLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 121
Query: 146 ICLPDW----NVTYDSENCVITGWG 166
+CLPD ++ +TGWG
Sbjct: 122 VCLPDRETAASLLQAGYKGRVTGWG 146
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 88 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 146
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 114/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G+ +
Sbjct: 25 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVGDRN 73
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
T ++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 74 T------EQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 127
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 128 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 178
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 179 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 235
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 236 VTAFLKWI 243
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 17 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 73
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 74 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 129
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 130 AESTLMTQKTGIVSGFGRTHEKG 152
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 92 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 147
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 120/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSD-TPGVYVDVRKFKKWI 542
+GIVSWG GC D PG Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKPGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 26/246 (10%)
Query: 302 EYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDT 361
E+PW +++ + + CG ++I V+ AAHC+ + + GE D+
Sbjct: 11 EFPWQVSVRRK--------SSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDS 62
Query: 362 ITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSA 421
+ Q V I+++EN++ T+ ND+++I ++G C P+ A
Sbjct: 63 SAASTV------RQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPA 116
Query: 422 EEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSF 481
+Y + +GWG G + L+ V + + C ++D
Sbjct: 117 NDYVYRKSQCSGWGTINSGGV-CCPAVLRYVTLNITTNAFCDAVYTSD------TIYDDM 169
Query: 482 ICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKF 538
ICA+ G ++D+C+GD GGPL +K+ F+ VGIVSWGIGC S PGVY V
Sbjct: 170 ICATDNTGMTDRDSCQGDSGGPL--SVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFH 227
Query: 539 KKWILD 544
WI D
Sbjct: 228 AGWITD 233
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 83/219 (37%), Gaps = 62/219 (28%)
Query: 43 EFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV--TYSVAAGEWFINGIVXX 100
EFPW + + +++ + CG S+I + AAHC+Q + S+ GE +
Sbjct: 11 EFPWQVSV--RRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSA---- 64
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENC 160
Q DV + ++ NY TLEN+++++K + I FD + PIC PD Y
Sbjct: 65 ASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKS 124
Query: 161 VITGWG--------------------------------------------------RDS- 169
+GWG RDS
Sbjct: 125 QCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSC 184
Query: 170 -ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY 207
D GGPL K+ F VGI +W + C PG+Y
Sbjct: 185 QGDSGGPL--SVKDGSGIFSLVGIVSWGIGCASGYPGVY 221
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q DV + ++ NY TLEN+++++K + I FD + PIC PD Y +GW
Sbjct: 70 QTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGW 129
Query: 292 G 292
G
Sbjct: 130 G 130
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDAGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 34/261 (13%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
G DS E G +PW++A+ + D V CGA+L+ +++AAHCV +
Sbjct: 4 GSDSRE---GAWPWVVALYFD----DQQV------CGASLVSRDWLVSAAHCVYGRNMEP 50
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNH 411
K + + +N T + + R + QI I+ ++ + NDIA++ L+ ++
Sbjct: 51 SKWKAVLGLHMASNLTSPQ---IETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDY 107
Query: 412 IGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
I C P + + + C + GWG + +G L++ +V L+ CQQQ+ +
Sbjct: 108 IQPICLPEENQVFPPGRICSIAGWGALIY--QGSTADVLQEADVPLLSNEKCQQQMPE-- 163
Query: 471 LGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-S 526
+ + ++ +CA +GG D+C+GD GGPL+CQ E +R+ G+ S+G C
Sbjct: 164 ----YNITENMVCAGYEAGG--VDSCQGDSGGPLMCQ---ENNRWLLAGVTSFGYQCALP 214
Query: 527 DTPGVYVDVRKFKKWILDNSH 547
+ PGVY V +F +WI H
Sbjct: 215 NRPGVYARVPRFTEWIQSFLH 235
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ-YDVTYSVAAGEW 92
+ G ++ G +PW++ L++ + + CGASL+ + ++AAHCV ++ S
Sbjct: 2 VGGSDSREGAWPWVVALYFDDQQV----CGASLVSRDWLVSAAHCVYGRNMEPSKWKAVL 57
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ + R + + I+P+Y+ N+IA++ L +++ DYI PICLP+ N
Sbjct: 58 GLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEEN 117
Query: 153 VTYDSEN-CVITGWG 166
+ C I GWG
Sbjct: 118 QVFPPGRICSIAGWG 132
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVITG 290
+ R + + I+P+Y+ N+IA++ L +++ DYI PICLP+ N + C I G
Sbjct: 71 ETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAG 130
Query: 291 WG 292
WG
Sbjct: 131 WG 132
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 35/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY-QERTVSQIYIH 385
CG TLI P V+TAAHC+ P R + I + P+ QE VS++++
Sbjct: 44 CGGTLISPEWVLTAAHCLEKSP------RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 97
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDK--FGVE 442
+ DIAL+ L P + + + AC P+ D+ C +TGWG+ + FG
Sbjct: 98 PTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGA- 150
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGG 499
L + ++ ++ VC R L G ++ + +CA +GG D+C+GD GG
Sbjct: 151 ----GLLMEAQLPVIENKVCN---RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDSGG 199
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
PLVC E+D++ G+ SWG+GC + PGVYV V +F WI
Sbjct: 200 PLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 82/228 (35%), Gaps = 70/228 (30%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD---VTYSVAAG 90
+ G Y +PW + L + M + CG +LI P LTAAHC++ +Y V
Sbjct: 19 VGGCVAYPHSWPWQVSL-RTRFGMHF--CGGTLISPEWVLTAAHCLEKSPRPSSYKV--- 72
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
I+ V ++ + + E +IALLKLSS D + P CLP
Sbjct: 73 ------ILGAHQEVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLPS 125
Query: 151 WN-VTYDSENCVITGWGRD----------------------------------------- 168
N V D C ITGWG
Sbjct: 126 PNYVVADRTECFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 185
Query: 169 --------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLY 207
D GGPLVC K+ + G+ +W + C P+ PG+Y
Sbjct: 186 LAGGTDSCQGDSGGPLVCFEKDK---YILQGVTSWGLGCARPNKPGVY 230
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWN-VTYDSENCVITGWGRDSAETFFGEYPWM 306
E +IALLKLSS D + P CLP N V D C ITGWG FG M
Sbjct: 97 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT--FGAGLLM 154
Query: 307 MAILTNKINK 316
A L NK
Sbjct: 155 EAQLPVIENK 164
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 44/267 (16%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
GRD T G +PW +++ DG+ CG +L+ V+TAAHC P +
Sbjct: 4 GRD---TSLGRWPWQVSL-----RYDGA-----HLCGGSLLSGDWVLTAAHC---FPERN 47
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF------EAKTVFNDIALIILDFP 405
+ W P Q + +Y H + ++ NDIAL+ L P
Sbjct: 48 RVLS--RWRVFAGAVAQASPHGLQLGVQAVVY-HGGYLPFRDPNSEENSNDIALVHLSSP 104
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
P+ +I C P + + D + C VTGWG ++ G+ L++ V ++ +VC
Sbjct: 105 LPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQY--YGQQAGVLQEARVPIISNDVCN- 161
Query: 465 QLRKTRLGGVF---KLHDSFICASGGPNQ--DACKGDGGGPLVCQLKNERD-RFTQVGIV 518
G F ++ CA G P DAC+GD GGP VC+ R R+ GIV
Sbjct: 162 -------GADFYGNQIKPKMFCA-GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIV 213
Query: 519 SWGIGCG-SDTPGVYVDVRKFKKWILD 544
SWG GC + PGVY V F++WI
Sbjct: 214 SWGTGCALAQKPGVYTKVSDFREWIFQ 240
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR+T G +PW + L Y ++ CG SL+ + LTAAHC + V +
Sbjct: 2 VGGRDTSLGRWPWQVSLRYDGAHL----CGGSLLSGDWVLTAAHC--FPERNRVLSRWRV 55
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY------STETLENNIALLKLSSNIDFDDYIHPIC 147
G V + V V H Y ++E N+IAL+ LSS + +YI P+C
Sbjct: 56 FAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVC 115
Query: 148 LP-DWNVTYDSENCVITGWG 166
LP D + C +TGWG
Sbjct: 116 LPAAGQALVDGKICTVTGWG 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 247 TETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITGWG 292
+E N+IAL+ LSS + +YI P+CLP D + C +TGWG
Sbjct: 89 SEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG 135
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPY---QERTVSQIY 383
CG +LI P V+TAAHC+ D+K D T RE Y Q VS+I
Sbjct: 29 CGGSLIHPQWVLTAAHCLG----PDVK------DLATLRVQLREQHLYYQDQLLPVSRII 78
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVE 442
+H F DIAL+ L+ P + + + P ++E + C VTGWG
Sbjct: 79 VHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEP 138
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGP 500
LK+V+V ++ ++C + G V + D +CA G +D+CKGD GGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCA-GNSQRDSCKGDSGGP 197
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
LVC++ + Q G+VSW GC + PG+Y V + WI
Sbjct: 198 LVCKVNGT---WLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV----TYSVAA 89
+ G+ ++PW + L R +F CG SLI P LTAAHC+ DV T V
Sbjct: 2 VGGQEAPRSKWPWQVSLRVRDRYWMHF-CGGSLIHPQWVLTAAHCLGPDVKDLATLRVQL 60
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
E + Q V + +HP + +IALL+L ++ +H + LP
Sbjct: 61 REQHL-------YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 150 DWNVTY-DSENCVITGWGRDSADGGGPLVCPSKE 182
+ T+ C +TGWG D P P K+
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQ 147
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITG 290
Q V + +HP + +IALL+L ++ +H + LP + T+ C +TG
Sbjct: 70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTG 129
Query: 291 WGR-DSAETFFGEYP 304
WG D+ E +P
Sbjct: 130 WGDVDNDEPLPPPFP 144
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 167 RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCT-PDMPGLYD-VTY 211
RDS D GGPLVC T+ Q G+ +W C P+ PG+Y VTY
Sbjct: 187 RDSCKGDSGGPLVCKVN---GTWLQAGVVSWDEGCAQPNRPGIYTRVTY 232
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 120/255 (47%), Gaps = 36/255 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N E + V +I IH+ ++ DIAL+ L+ + P+
Sbjct: 61 --ILNQAEIAEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSH 547
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQ 236
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 56 RVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PI LP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYT--DCWVTGWG 133
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 120/256 (46%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N E + V +I IH+ ++ DIAL+ L+ + P+
Sbjct: 61 --ILNQSEIAEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 56 RVYSGILNQSEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PI LP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYT--DCWVTGWG 133
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 34/261 (13%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
G D+ E G +PW++ G ++ CGA+L+ +++AAHCV +
Sbjct: 4 GSDAKE---GAWPWVV----------GLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEP 50
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNH 411
K + +N T + P R + +I I+ ++ + NDIA++ L+F ++
Sbjct: 51 SKWTAILGLHMKSNLTSPQTVP---RLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDY 107
Query: 412 IGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
I P + + +NC + GWG + +G L++ +V L+ CQQQ+ +
Sbjct: 108 IQPISLPEENQVFPPGRNCSIAGWGTVVY--QGTTADILQEADVPLLSNERCQQQMPE-- 163
Query: 471 LGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-S 526
+ + ++ ICA GG D+C+GD GGPL+CQ E +R+ G+ S+G C
Sbjct: 164 ----YNITENMICAGYEEGG--IDSCQGDSGGPLMCQ---ENNRWFLAGVTSFGYECALP 214
Query: 527 DTPGVYVDVRKFKKWILDNSH 547
+ PGVY V +F +WI H
Sbjct: 215 NRPGVYARVSRFTEWIQSFLH 235
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEW- 92
+ G + G +PW++ L+Y R CGASL+ + ++AAHCV ++ +W
Sbjct: 2 VGGSDAKEGAWPWVVGLYYDDR----LLCGASLVSSDWLVSAAHCV---YGRNLEPSKWT 54
Query: 93 FINGIVXXXXXXXQR---RDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
I G+ + R + ++ I+P+Y+ +N+IA++ L +++ DYI PI LP
Sbjct: 55 AILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLP 114
Query: 150 DWNVTY-DSENCVITGWG 166
+ N + NC I GWG
Sbjct: 115 EENQVFPPGRNCSIAGWG 132
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 234 RDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWG 292
R + ++ I+P+Y+ +N+IA++ L +++ DYI PI LP+ N + NC I GWG
Sbjct: 73 RLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWG 132
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 120/256 (46%), Gaps = 36/256 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDI-KVRGGEW 359
GE+PW + + T S T+ CG ++I ++TAAHC + I +V G
Sbjct: 10 GEWPWQVTLHTT------SPTQRHL-CGGSIIGNQWILTAAHCFYGVESPKILRVYSG-- 60
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
I N E + V +I IH+ ++ DIAL+ L+ + P+
Sbjct: 61 --ILNQAEIAEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPS 116
Query: 420 SAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+ Y D C VTGWG K + Q+TL+K ++ LV CQ++ R K
Sbjct: 117 KGDRNVIYTD--CWVTGWGYRKL--RDKIQNTLQKAKIPLVTNEECQKRYRG------HK 166
Query: 477 LHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ ICA GG +DACKGD GGPL C+ + + VGI SWG GC + PGVY
Sbjct: 167 ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVY 221
Query: 533 VDVRKFKKWILDNSHG 548
+V ++ WIL+ +
Sbjct: 222 TNVVEYVDWILEKTQA 237
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 68/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GE+PW + L + CG S+IG LTAAHC Y V + +
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHL-CGGSIIGNQWILTAAHCF-----YGVESPKIL 55
Query: 94 --INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+GI+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 56 RVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLP 115
Query: 150 ---DWNVTYDSENCVITGWG----RD---------------------------------- 168
D NV Y +C +TGWG RD
Sbjct: 116 SKGDRNVIYT--DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMIC 173
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTP-DMPGLY 207
D GGPL C E + VGI +W C + PG+Y
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVY 221
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---DWNVTYDSENCVITGWG 292
V ++ IH Y +IALLKL + +++ D PI LP D NV Y +C +TGWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYT--DCWVTGWG 133
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 40/265 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
++I C P+ VTGWG K E S L+ V + +V R VC
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK---EKGQPSVLQVVNLPIVERPVC 166
Query: 463 QQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQVGIV 518
+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q+GIV
Sbjct: 167 KDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQMGIV 218
Query: 519 SWGIGCGSDTP-GVYVDVRKFKKWI 542
SWG GC D G Y V + KKWI
Sbjct: 219 SWGEGCDRDGKYGFYTHVFRLKKWI 243
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWGRDSADG 172
LPD ++ +TGWG G
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWGNLKEKG 148
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 40/265 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
++I C P+ VTGWG K E S L+ V + +V R VC
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK---ETGQPSVLQVVNLPIVERPVC 166
Query: 463 QQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQVGIV 518
+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q+GIV
Sbjct: 167 KDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQMGIV 218
Query: 519 SWGIGCGSDTP-GVYVDVRKFKKWI 542
SWG GC D G Y V + KKWI
Sbjct: 219 SWGEGCDRDGKYGFYTHVFRLKKWI 243
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPD----WNVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 40/265 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
++I C P+ VTGWG K E S L+ V + +V R VC
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK---ETGQPSVLQVVNLPIVERPVC 166
Query: 463 QQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQVGIV 518
+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q+GIV
Sbjct: 167 KDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQMGIV 218
Query: 519 SWGIGCGSDTP-GVYVDVRKFKKWI 542
SWG GC D G Y V + KKWI
Sbjct: 219 SWGEGCDRDGKYGFYTHVFRLKKWI 243
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 44/267 (16%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
GRD T G +PW +++ DG+ CG +L+ V+TAAHC P +
Sbjct: 121 GRD---TSLGRWPWQVSL-----RYDGA-----HLCGGSLLSGDWVLTAAHC---FPERN 164
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF------EAKTVFNDIALIILDFP 405
+ W P Q + +Y H + ++ NDIAL+ L P
Sbjct: 165 RVL--SRWRVFAGAVAQASPHGLQLGVQAVVY-HGGYLPFRDPNSEENSNDIALVHLSSP 221
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
P+ +I C P + + D + C VTGWG ++ G+ L++ V ++ +VC
Sbjct: 222 LPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQY--YGQQAGVLQEARVPIISNDVCN- 278
Query: 465 QLRKTRLGGVF---KLHDSFICASGGPNQ--DACKGDGGGPLVCQLKNERD-RFTQVGIV 518
G F ++ CA G P DAC+GD GGP VC+ R R+ GIV
Sbjct: 279 -------GADFYGNQIKPKMFCA-GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIV 330
Query: 519 SWGIGCG-SDTPGVYVDVRKFKKWILD 544
SWG GC + PGVY V F++WI
Sbjct: 331 SWGTGCALAQKPGVYTKVSDFREWIFQ 357
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR+T G +PW + L Y ++ CG SL+ + LTAAHC + V +
Sbjct: 119 VGGRDTSLGRWPWQVSLRYDGAHL----CGGSLLSGDWVLTAAHC--FPERNRVLSRWRV 172
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY------STETLENNIALLKLSSNIDFDDYIHPIC 147
G V + V V H Y ++E N+IAL+ LSS + +YI P+C
Sbjct: 173 FAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVC 232
Query: 148 LP-DWNVTYDSENCVITGWG 166
LP D + C +TGWG
Sbjct: 233 LPAAGQALVDGKICTVTGWG 252
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 247 TETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITGWG 292
+E N+IAL+ LSS + +YI P+CLP D + C +TGWG
Sbjct: 206 SEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG 252
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 44/267 (16%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
GRD T G +PW +++ DG+ CG +L+ V+TAAHC P +
Sbjct: 121 GRD---TSLGRWPWQVSL-----RYDGA-----HLCGGSLLSGDWVLTAAHC---FPERN 164
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF------EAKTVFNDIALIILDFP 405
+ W P Q + +Y H + ++ NDIAL+ L P
Sbjct: 165 RVL--SRWRVFAGAVAQASPHGLQLGVQAVVY-HGGYLPFRDPNSEENSNDIALVHLSSP 221
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
P+ +I C P + + D + C VTGWG ++ G+ L++ V ++ +VC
Sbjct: 222 LPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQY--YGQQAGVLQEARVPIISNDVCN- 278
Query: 465 QLRKTRLGGVF---KLHDSFICASGGPNQ--DACKGDGGGPLVCQLKNERD-RFTQVGIV 518
G F ++ CA G P DAC+GD GGP VC+ R R+ GIV
Sbjct: 279 -------GADFYGNQIKPKMFCA-GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIV 330
Query: 519 SWGIGCG-SDTPGVYVDVRKFKKWILD 544
SWG GC + PGVY V F++WI
Sbjct: 331 SWGTGCALAQKPGVYTKVSDFREWIFQ 357
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR+T G +PW + L Y ++ CG SL+ + LTAAHC + V +
Sbjct: 119 VGGRDTSLGRWPWQVSLRYDGAHL----CGGSLLSGDWVLTAAHC--FPERNRVLSRWRV 172
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY------STETLENNIALLKLSSNIDFDDYIHPIC 147
G V + V V H Y ++E N+IAL+ LSS + +YI P+C
Sbjct: 173 FAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVC 232
Query: 148 LP-DWNVTYDSENCVITGWG 166
LP D + C +TGWG
Sbjct: 233 LPAAGQALVDGKICTVTGWG 252
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 247 TETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITGWG 292
+E N+IAL+ LSS + +YI P+CLP D + C +TGWG
Sbjct: 206 SEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG 252
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 112/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G+ +
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRN 58
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
T + V + H F +T DIA++ L P + ++ AC P
Sbjct: 59 TAAEEGGE------AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +GR + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGRQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDR- 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
N +V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 58 -NTAAEEGGEAVHEVEV--VIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGR 293
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 42/259 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE+PW +++ G + CGA+LI P+ +++AAHC I RG +
Sbjct: 10 GEWPWQVSL---HALGQGHI------CGASLISPNWLVSAAHCY-------IDDRGFRYS 53
Query: 361 TIT--------NNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHI 412
T ++++ R QER + +I H F T DIAL+ L+ P + +
Sbjct: 54 DPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMV 113
Query: 413 GLACTPNSAEEYDDQNCI-VTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRL 471
C P+++ + I VTGWG ++G G L+K E++++ + C+ L +
Sbjct: 114 RPICLPDASHVFPAGKAIWVTGWGHTQYGGTGAL--ILQKGEIRVIQQTTCENLLPQ--- 168
Query: 472 GGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-D 527
++ +C SGG D+C+GD GGPL + R Q G+VSWG GC +
Sbjct: 169 ----QITPRMMCVGFLSGG--VDSCQGDSGGPLSSVEAD--GRIFQAGVVSWGDGCAQRN 220
Query: 528 TPGVYVDVRKFKKWILDNS 546
PGVY + F+ WI +N+
Sbjct: 221 KPGVYTRLPLFRDWIKENT 239
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVA-AGEW 92
+ G + GE+PW + L + CGASLI PN ++AAHC D + + +W
Sbjct: 2 VGGTDADEGEWPWQVSLHALGQG---HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQW 58
Query: 93 F----INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICL 148
++ Q R + + HP ++ T + +IALL+L ++ + PICL
Sbjct: 59 TAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICL 118
Query: 149 PDWNVTYDSENCV-ITGWGRDSADGGGPLVCPSKE 182
PD + + + + +TGWG G G L+ E
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGE 153
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV-ITG 290
Q R + + HP ++ T + +IALL+L ++ + PICLPD + + + + +TG
Sbjct: 76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTG 135
Query: 291 WG 292
WG
Sbjct: 136 WG 137
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 112/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +G + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGEQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGRDSAE 297
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR +
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 298 TFFGEYPWMMAIL--------TNKINKDGSVTENVFQCG 328
GE + +L + K++ +T+N+F G
Sbjct: 137 ---GEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAG 172
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 121/267 (45%), Gaps = 43/267 (16%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWG--KDKFGVEGRYQSTLKKVEVKLVPRN 460
++I C P+ VTGWG K+ +G S L+ V + +V R
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWG----QPSVLQVVNLPIVERP 165
Query: 461 VCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQVG 516
VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q+G
Sbjct: 166 VCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQMG 217
Query: 517 IVSWGIGCGSDTP-GVYVDVRKFKKWI 542
IVSWG GC D G Y V + KKWI
Sbjct: 218 IVSWGEGCDRDGKYGFYTHVFRLKKWI 244
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWGRDSADGGGPLV 177
LPD ++ +TGWG G P V
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWGNLKETWGQPSV 153
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 42/259 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE+PW +++ G + CGA+LI P+ +++AAHC I RG +
Sbjct: 10 GEWPWQVSL---HALGQGHI------CGASLISPNWLVSAAHCY-------IDDRGFRYS 53
Query: 361 TIT--------NNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHI 412
T ++++ R QER + +I H F T DIAL+ L+ P + +
Sbjct: 54 DPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMV 113
Query: 413 GLACTPNSAEEYDDQNCI-VTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRL 471
C P+++ + I VTGWG ++G G L+K E++++ + C+ L +
Sbjct: 114 RPICLPDASHVFPAGKAIWVTGWGHTQYGGTGAL--ILQKGEIRVINQTTCENLLPQ--- 168
Query: 472 GGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-D 527
++ +C SGG D+C+GD GGPL + R Q G+VSWG GC +
Sbjct: 169 ----QITPRMMCVGFLSGG--VDSCQGDSGGPLSSVEAD--GRIFQAGVVSWGDGCAQRN 220
Query: 528 TPGVYVDVRKFKKWILDNS 546
PGVY + F+ WI +N+
Sbjct: 221 KPGVYTRLPLFRDWIKENT 239
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVA-AGEW 92
+ G + GE+PW + L + CGASLI PN ++AAHC D + + +W
Sbjct: 2 VGGTDADEGEWPWQVSLHALGQG---HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQW 58
Query: 93 F----INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICL 148
++ Q R + + HP ++ T + +IALL+L ++ + PICL
Sbjct: 59 TAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICL 118
Query: 149 PDWNVTYDSENCV-ITGWGRDSADGGGPLVCPSKE 182
PD + + + + +TGWG G G L+ E
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGE 153
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV-ITG 290
Q R + + HP ++ T + +IALL+L ++ + PICLPD + + + + +TG
Sbjct: 76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTG 135
Query: 291 WG 292
WG
Sbjct: 136 WG 137
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 112/248 (45%), Gaps = 35/248 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G
Sbjct: 10 GECPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVG--- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ T++E V + H F +T DIA++ L P + ++ AC P
Sbjct: 56 ---DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Query: 421 --AEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
AE + IV+G+G+ +G + LK +EV V RN C +L F
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTH--EKGEQSTRLKMLEVPYVDRNSC-------KLSSSFI 163
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + CA Q DAC+GD GGP V + K D + GIVSWG GC G+Y
Sbjct: 164 ITQNMFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 535 VRKFKKWI 542
V F KWI
Sbjct: 221 VTAFLKWI 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGQECKDGECPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW 151
+V V H ++ ET + +IA+L+L + I F + P CLP DW
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 152 --NVTYDSENCVITGWGRDSADG 172
+ + +++G+GR G
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKG 137
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DW--NVTYDSENCVITGWGRDSAE 297
H ++ ET + +IA+L+L + I F + P CLP DW + + +++G+GR +
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 298 TFFGEYPWMMAIL--------TNKINKDGSVTENVFQCG 328
GE + +L + K++ +T+N+F G
Sbjct: 137 ---GEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAG 172
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQY---DVTYS---- 86
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y D ++
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 87 -VAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYS-TETLENNIALLKLSSNIDFDDYIH 144
V G+ + + + + IHP Y+ E L+ +IAL+KL + F DYIH
Sbjct: 60 LVRIGK---HSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 145 PICLPDW----NVTYDSENCVITGWG 166
P+CLPD ++ +TGWG
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQY---DVTYS---- 86
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y D ++
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 87 -VAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYS-TETLENNIALLKLSSNIDFDDYIH 144
V G+ + + + + IHP Y+ E L+ +IAL+KL + F DYIH
Sbjct: 60 LVRIGK---HSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 145 PICLPDW----NVTYDSENCVITGWG 166
P+CLPD ++ +TGWG
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 33 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 84
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 85 TENDLLVRIGK-----HSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 200 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 251
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 252 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 16 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 73
Query: 78 CVQY---DVTYS-----VAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYS-TETLENNI 128
C+ Y D ++ V G+ + + + + IHP Y+ E L+ +I
Sbjct: 74 CLLYPPWDKNFTENDLLVRIGK---HSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDI 130
Query: 129 ALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
AL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 131 ALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 114 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 121/265 (45%), Gaps = 42/265 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
++I C P+ VTGWG ++G+ S L+ V + +V R VC
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGN----LKGQ-PSVLQVVNLPIVERPVC 164
Query: 463 QQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQVGIV 518
+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q+GIV
Sbjct: 165 KDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQMGIV 216
Query: 519 SWGIGCGSDTP-GVYVDVRKFKKWI 542
SWG GC D G Y V + KKWI
Sbjct: 217 SWGEGCDRDGKYGFYTHVFRLKKWI 241
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWGR 293
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGN 143
Query: 294 DSAETFFGEYPWMMAILTNKINKDGS---VTENVFQCG 328
+ + + I+ + KD + +T+N+F G
Sbjct: 144 LKGQPSVLQVV-NLPIVERPVCKDSTRIRITDNMFCAG 180
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGKGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 121/261 (46%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK++ + Y LK VKL+ CQQ
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQ-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++ +
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKEQS 145
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 4 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 55
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 56 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 110
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 111 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 170
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 171 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK-SPFNNRWYQ 222
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 223 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 251
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 3 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 60
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 61 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 120
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 121 LPDRETAASLLQAGYKGRVTGWG 143
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 85 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 143
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKIGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACQGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 47 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 96
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + H+ P+S Q C+++GWG +
Sbjct: 97 NFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 154
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 155 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 205
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 206 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 240
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 34 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 87
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + ++ + LP ++ C+I+GWG
Sbjct: 88 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAGTQ-CLISGWGNT 146
Query: 169 SADG 172
+ G
Sbjct: 147 LSSG 150
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + ++ + LP ++ C+I+GWG
Sbjct: 95 HPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAGTQ-CLISGWGN 145
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 121/261 (46%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK++ + Y LK VKL+ CQQ
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQ-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++ +
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKEQS 145
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 52 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 103
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 104 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 158
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 159 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 218
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 219 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK-SPFNNRWYQ 270
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 271 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 299
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 35 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 92
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 93 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 152
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 153 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 191
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 133 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 191
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 33 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 84
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 85 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 200 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 251
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 252 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 16 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 73
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 74 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 133
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 114 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 32 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 83
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 84 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 138
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 139 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 198
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 199 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 250
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 251 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 279
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 15 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 72
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 73 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 132
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 133 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 171
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 113 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 171
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 34 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 85
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 86 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 140
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 141 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 200
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 201 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMK-SPFNNRWYQ 252
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 253 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 281
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 17 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 74
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 75 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 134
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 135 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 173
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 115 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 173
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKFGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 33 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 84
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 85 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 200 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 251
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 252 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 16 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 73
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 74 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 133
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 114 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 39 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 90
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 91 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 145
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 146 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 205
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 206 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 257
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 258 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 286
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 22 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 79
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 80 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 139
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 140 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 178
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 120 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 178
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 121/261 (46%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK++ + Y LK VKL+ CQQ
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQ-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++ +
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKEQS 145
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCRDDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 35 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 86
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 87 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 141
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 142 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 201
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 202 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 253
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 254 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 282
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 18 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 75
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 76 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 135
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 136 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 174
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 116 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 174
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 33 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 84
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 85 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 200 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 251
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 252 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 16 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 73
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 74 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 133
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 114 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 172
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 39 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 90
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 91 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 145
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 146 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 205
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 206 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 257
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 258 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 286
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 22 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 79
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 80 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 139
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 140 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 178
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 120 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 178
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 35 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 86
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 87 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 141
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 142 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 201
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 202 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 253
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 254 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 282
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 18 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 75
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 76 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 135
Query: 132 KLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 166
KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 136 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 174
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 116 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 174
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 IENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 114/253 (45%), Gaps = 31/253 (12%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPV---TDIKVRG 356
GE+P+ ++ I + CGA++ + +TA HCV + +++
Sbjct: 9 LGEFPYQLSFQETFIGF------SFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVA 62
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
GE D N ++ Q TVS+I +HENF+ + NDI+L+ L +++
Sbjct: 63 GELDMSVNEGSE------QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIA 116
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
P + IVTGWG G G L+KV V LV C+ G +
Sbjct: 117 LPEQGHTA-TGDVIVTGWGTTSEG--GNTPDVLQKVTVPLVSDEDCRADY------GADE 167
Query: 477 LHDSFICASGGP--NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYV 533
+ DS ICA G P +D+C+GD GGPL ++ GIVSWG GC PGVY
Sbjct: 168 ILDSMICA-GVPEGGKDSCQGDSGGPLA---ASDTGSTYLAGIVSWGYGCARPGYPGVYT 223
Query: 534 DVRKFKKWILDNS 546
+V WI N+
Sbjct: 224 EVSYHVDWIKANA 236
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + GEFP+ L + CGAS+ N A+TA HCV Y Y +G
Sbjct: 2 VGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCV-YGDDYENPSGLQI 60
Query: 94 INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ G + + V + +H N+ L+N+I+LLKLS ++ F+D + PI LP+
Sbjct: 61 VAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQ 120
Query: 152 NVTYDSENCVITGWGRDSADGGGPLV 177
T + + ++TGWG S G P V
Sbjct: 121 GHTA-TGDVIVTGWGTTSEGGNTPDV 145
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q V + +H N+ L+N+I+LLKLS ++ F+D + PI LP+ T + + ++TGW
Sbjct: 75 QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTA-TGDVIVTGW 133
Query: 292 GRDS 295
G S
Sbjct: 134 GTTS 137
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++++
Sbjct: 118 QTISLPSMYNDPQFGTSCEITGFGKENS 145
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEA-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ DAC+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDACQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEAS 145
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKENS 145
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++++
Sbjct: 118 QTISLPSMYNDPQFGTSCEITGFGKENS 145
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG + + S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++++
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKENS 145
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 123/279 (44%), Gaps = 46/279 (16%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 168 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 219
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 220 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 274
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 275 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 334
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 335 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 386
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWILDNSHGKIID 552
+GIVSWG GC D G Y V + KKWI K+ID
Sbjct: 387 MGIVSWGEGCDRDGKYGFYTHVFRLKKWIQ-----KVID 420
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 18 NHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAH 77
+ T E E Y + G + G PW ++LF +++ + CGASLI LTAAH
Sbjct: 151 DKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAH 208
Query: 78 CVQYDVTYSVAAGEWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALL 131
C+ Y + I +R +L+ + IHP Y+ E L+ +IAL+
Sbjct: 209 CLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 268
Query: 132 KLSSNIDFDDYIHPICLPDWNVTYD----SENCVITGWG 166
KL + F DYIHP+CLPD +TGWG
Sbjct: 269 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 307
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD----SENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD +TGWG
Sbjct: 249 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 307
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +LI P V++A HC + P + + +
Sbjct: 28 PWFAAIY--RRHRGGSVT---YVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLN 82
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 83 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 131
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 132 IQTISLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 190
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 191 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 242
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 243 PGVYTRVSHFLPWI--RSHTK 261
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SLI P ++A HC + Y Y V
Sbjct: 17 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYL 76
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 77 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 132
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++++
Sbjct: 133 QTISLPSMYNDPQFGTSCEITGFGKENS 160
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 40/258 (15%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK++ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEQ-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNS 546
PGVY V F WI ++
Sbjct: 228 PGVYTRVSHFLPWIRSHT 245
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++ +
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEQS 145
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 118/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC G Y V + KKWI
Sbjct: 222 MGIVSWGEGCARKGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + +IAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ NIAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ NIAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEA-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEAS 145
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 118/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+ D GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEADSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 40/258 (15%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNS 546
PGVY V F WI ++
Sbjct: 228 PGVYTRVSHFLPWIRSHT 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
I LP +N +C ITG+G++++
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKENS 145
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 117/257 (45%), Gaps = 47/257 (18%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIK 353
D A G +PW +A+L+ N CG L+ V+TAAHC N +
Sbjct: 3 DGAPCARGSHPWQVALLSG----------NQLHCGGVLVNERWVLTAAHCKMN----EYT 48
Query: 354 VRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIG 413
V G DT+ + R Q S+ + H + +T ND+ L+ L+ + + +
Sbjct: 49 VHLGS-DTLGDRRA-------QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100
Query: 414 LACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
P+ E C V+GWG + + S L V+VKL+ C +
Sbjct: 101 KVRLPSRCEP-PGTTCTVSGWGTTT-SPDVTFPSDLMCVDVKLISPQDCTK--------- 149
Query: 474 VFK--LHDSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-D 527
V+K L +S +CA G P+ ++AC GD GGPLVC R T G+VSWG CG +
Sbjct: 150 VYKDLLENSMLCA-GIPDSKKNACNGDSGGPLVC-------RGTLQGLVSWGTFPCGQPN 201
Query: 528 TPGVYVDVRKFKKWILD 544
PGVY V KF KWI D
Sbjct: 202 DPGVYTQVCKFTKWIND 218
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G G PW + L + CG L+ LTAAHC + Y+V G
Sbjct: 2 IDGAPCARGSHPWQVALLSGNQ----LHCGGVLVNERWVLTAAHCKMNE--YTVHLGSDT 55
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ QR HP YST+T N++ L+KL+S + + LP
Sbjct: 56 LG------DRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS-RC 108
Query: 154 TYDSENCVITGWGRDSA 170
C ++GWG ++
Sbjct: 109 EPPGTTCTVSGWGTTTS 125
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSA 296
HP YST+T N++ L+KL+S + + LP C ++GWG ++
Sbjct: 72 HPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS-RCEPPGTTCTVSGWGTTTS 125
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 228 PGVYTRVSHFLPWI--RSHTK 246
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKENS 145
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 33 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 82
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 83 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 140
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 141 DLLKCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 191
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 192 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 20 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 73
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 74 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 132
Query: 169 SADG 172
+ G
Sbjct: 133 LSSG 136
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 81 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 131
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 117/257 (45%), Gaps = 47/257 (18%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIK 353
D A G +PW +A+L+ N CG L+ V+TAAHC N +
Sbjct: 3 DGAPCARGSHPWQVALLSG----------NQLHCGGVLVNERWVLTAAHCKMN----EYT 48
Query: 354 VRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIG 413
V G DT+ + R R S+ + H + +T ND+ L+ L+ + + +
Sbjct: 49 VHLGS-DTLGDRRAQRI-------KASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100
Query: 414 LACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
P+ E C V+GWG + + S L V+VKL+ C +
Sbjct: 101 KVRLPSRCEP-PGTTCTVSGWGTTT-SPDVTFPSDLMCVDVKLISPQDCTK--------- 149
Query: 474 VFK--LHDSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-D 527
V+K L +S +CA G P+ ++AC GD GGPLVC R T G+VSWG CG +
Sbjct: 150 VYKDLLENSMLCA-GIPDSKKNACNGDSGGPLVC-------RGTLQGLVSWGTFPCGQPN 201
Query: 528 TPGVYVDVRKFKKWILD 544
PGVY V KF KWI D
Sbjct: 202 DPGVYTQVCKFTKWIND 218
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G G PW + L + CG L+ LTAAHC + Y+V G
Sbjct: 2 IDGAPCARGSHPWQVALL----SGNQLHCGGVLVNERWVLTAAHCKMNE--YTVHLGSDT 55
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ QR HP YST+T N++ L+KL+S + + LP
Sbjct: 56 LG------DRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS-RC 108
Query: 154 TYDSENCVITGWGRDSA 170
C ++GWG ++
Sbjct: 109 EPPGTTCTVSGWGTTTS 125
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSA 296
HP YST+T N++ L+KL+S + + LP C ++GWG ++
Sbjct: 72 HPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS-RCEPPGTTCTVSGWGTTTS 125
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 34/223 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKD-KFGVEGRY 445
NF+ KT+ NDI LI L P + + P+S Q C+++GWG GV +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGHTLSSGV--NH 131
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+V
Sbjct: 132 PDLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVV 182
Query: 503 CQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
C + + GIVSWG GC D PGVY V + WI D
Sbjct: 183 CNGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGHT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGH 123
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 40/258 (15%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEA-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNS 546
PGVY V F WI ++
Sbjct: 228 PGVYTRVSHFLPWIRSHT 245
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEAS 145
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 40/258 (15%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 13 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 67
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 68 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 116
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 176 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 227
Query: 529 PGVYVDVRKFKKWILDNS 546
PGVY V F WI ++
Sbjct: 228 PGVYTRVSHFLPWIRSHT 245
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 2 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 61
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 62 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKENS 145
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW AI + ++ GSVT + CG +L+ P V++A HC + P + + +
Sbjct: 36 PWFAAIY--RRHRGGSVT---YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 90
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTPNSA 421
+N F V + +H+++ A T+ NDIAL+ +++ G P+
Sbjct: 91 SNTQGEMKF-----EVENLILHKDYSADTLAHHNDIALL------KIRSKEGRCAQPSRT 139
Query: 422 EE-------YDD----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ Y+D +C +TG+GK+ + Y LK VKL+ CQQ
Sbjct: 140 IQTICLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGS 198
Query: 471 LGGVFKLHDSFICASGGP-NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDT 528
++ +CA+ D+C+GD GGPLVC L+ R T GIVSWG GC D
Sbjct: 199 -----EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDK 250
Query: 529 PGVYVDVRKFKKWILDNSHGK 549
PGVY V F WI SH K
Sbjct: 251 PGVYTRVSHFLPWI--RSHTK 269
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEY-FKCGASLIGPNIALTAAHC-VQYDVT--YSVAA 89
I G T PW ++ R + CG SL+ P ++A HC + Y Y V
Sbjct: 25 IGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYL 84
Query: 90 GEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL--ENNIALLKLSSN----IDFDDYI 143
G +N + +V ++ +H +YS +TL N+IALLK+ S I
Sbjct: 85 GRSRLNS----NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 140
Query: 144 HPICLPD-WNVTYDSENCVITGWGRDSA 170
ICLP +N +C ITG+G++++
Sbjct: 141 QTICLPSMYNDPQFGTSCEITGFGKENS 168
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 42/259 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE+PW +++ G + CGA+LI P+ +++AAHC I RG +
Sbjct: 10 GEWPWQVSL---HALGQGHI------CGASLISPNWLVSAAHCY-------IDDRGFRYS 53
Query: 361 TIT--------NNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHI 412
T ++++ R QER + +I H F T DIAL+ L+ P + +
Sbjct: 54 DPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMV 113
Query: 413 GLACTPNSAEEYDDQNCI-VTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRL 471
P+++ + I VTGWG ++G G L+K E++++ + C+ L +
Sbjct: 114 RPISLPDASHVFPAGKAIWVTGWGHTQYGGTGAL--ILQKGEIRVINQTTCENLLPQ--- 168
Query: 472 GGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-D 527
++ +C SGG D+C+GD GGPL + R Q G+VSWG GC +
Sbjct: 169 ----QITPRMMCVGFLSGG--VDSCQGDSGGPLSSVEAD--GRIFQAGVVSWGDGCAQRN 220
Query: 528 TPGVYVDVRKFKKWILDNS 546
PGVY + F+ WI +N+
Sbjct: 221 KPGVYTRLPLFRDWIKENT 239
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVA-AGEW 92
+ G + GE+PW + L + CGASLI PN ++AAHC D + + +W
Sbjct: 2 VGGTDADEGEWPWQVSLHALGQG---HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQW 58
Query: 93 F----INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICL 148
++ Q R + + HP ++ T + +IALL+L ++ + PI L
Sbjct: 59 TAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISL 118
Query: 149 PDWNVTYDSENCV-ITGWGRDSADGGGPLVCPSKE 182
PD + + + + +TGWG G G L+ E
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGE 153
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV-ITG 290
Q R + + HP ++ T + +IALL+L ++ + PI LPD + + + + +TG
Sbjct: 76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTG 135
Query: 291 WG 292
WG
Sbjct: 136 WG 137
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 34/223 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKD-KFGVEGRY 445
NF+ KT+ NDI LI L P + + P+S Q C+++GWG GV +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAPAGTQ-CLISGWGHTLSSGV--NH 131
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+V
Sbjct: 132 PDLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVV 182
Query: 503 CQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
C + + GIVSWG GC D PGVY V + WI D
Sbjct: 183 CNGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + I LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAPAGTQ-CLISGWGHT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + I LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAPAGTQ-CLISGWGH 123
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDAGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG 122
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 35 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 84
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 85 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 142
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 143 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDAGGPVVC 193
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 194 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 22 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 75
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 76 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 134
Query: 169 SADG 172
+ G
Sbjct: 135 LSSG 138
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 83 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 133
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 35 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 84
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 85 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 142
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 143 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 193
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 194 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 22 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 75
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 76 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 134
Query: 169 SADG 172
+ G
Sbjct: 135 LSSG 138
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 83 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 133
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 118/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+ D GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEPDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC D G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 33 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 82
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 83 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 140
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 141 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 191
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 192 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 20 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 73
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 74 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 132
Query: 169 SADG 172
+ G
Sbjct: 133 LSSG 136
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 81 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 131
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 32/235 (13%)
Query: 312 NKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREP 371
N + S+ CG +LI V++AAHC + I+VR GE + N T+
Sbjct: 10 NSASYQASLQSGYHFCGGSLISSTWVVSAAHCYK----SRIQVRLGEHNIAVNEGTE--- 62
Query: 372 FPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIV 431
Q ++ +H ++ ++ + NDI LI L P + +++ P+S C+V
Sbjct: 63 ---QFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPSSCAS-SGTRCLV 118
Query: 432 TGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGP 488
+GWG + G Y TL+ +++ ++ + C ++ + CA GG
Sbjct: 119 SGWG-NLSGSSSNYPDTLRCLDLPILSSSSCNSAYPG-------QITSNMFCAGFMEGG- 169
Query: 489 NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+D+C+GD GGP+VC + + G+VSWG GC + PGVY V ++ WI
Sbjct: 170 -KDSCQGDSGGPVVCNGQLQ-------GVVSWGYGCAQRNKPGVYTKVCNYRSWI 216
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 59 YFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPN 118
Y CG SLI ++AAHC Y V GE I Q D + V +HP+
Sbjct: 22 YHFCGGSLISSTWVVSAAHC--YKSRIQVRLGEHNI----AVNEGTEQFIDSVKVIMHPS 75
Query: 119 YSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAD 171
Y++ L+N+I L+KLS + Y+ + LP + C+++GWG S
Sbjct: 76 YNSRNLDNDIMLIKLSKPASLNSYVSTVALPS-SCASSGTRCLVSGWGNLSGS 127
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 294
D + V +HP+Y++ L+N+I L+KLS + Y+ + LP + C+++GWG
Sbjct: 66 DSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPS-SCASSGTRCLVSGWGNL 124
Query: 295 SAETFFGEYPWMMAIL------TNKINKD--GSVTENVFQCG 328
S + YP + L ++ N G +T N+F G
Sbjct: 125 SGSS--SNYPDTLRCLDLPILSSSSCNSAYPGQITSNMFCAG 164
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ +T NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ F + D+ +C GG +DAC+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASSS-------FIITDNMVCVGFLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ ET N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ ET N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 118/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVS G GC D G Y V + KKWI
Sbjct: 222 MGIVSAGAGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDCGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 118/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVS G GC D G Y V + KKWI
Sbjct: 222 MGIVSAGAGCDRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 46/276 (16%)
Query: 287 VITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-- 344
++ GW + G PW + + + CGA+LI V+TAAHC+
Sbjct: 1 IVEGWDAEK-----GIAPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCILY 47
Query: 345 ----NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIAL 399
N D+ VR G+ ++RT E + + +IY+H + + + DIAL
Sbjct: 48 PPWDKNFTENDLLVRIGK-----HSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIAL 102
Query: 400 IILDFPFPVKNHIGLACTPN----SAEEYDDQNCIVTGWGKDK----FGVEGRYQSTLKK 451
+ L P P ++I C P+ ++ VTGWG + + S L+
Sbjct: 103 LKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQV 162
Query: 452 VEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKN 507
V + +V R VC+ R ++ D+ CA N DAC+GD GGP V +
Sbjct: 163 VNLPIVERPVCKASTR-------IRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMK-SP 214
Query: 508 ERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+R+ Q+GIVSWG GC G Y V + K+WI
Sbjct: 215 FNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWI 250
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGWDAEKGIAPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + +HP Y+ E L+ +IALLKL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVC 119
Query: 148 LPD----WNVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDKQTVTSLLRAGYKGRVTGWG 142
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ +HP Y+ E L+ +IALLKL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWG 142
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLK 506
LK ++ ++ + C+ ++ + CA G D+C+GD GGP+VC K
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCA-GLEGGDSCQGDSGGPVVCSGK 184
Query: 507 NERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+ GIVSWG GC + PGVY V + WI
Sbjct: 185 LQ-------GIVSWGSGCAKNKPGVYTKVCNYVSWI 213
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 75/206 (36%), Gaps = 61/206 (29%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG-----------------------------------------------GGPLVCPSK 181
+ G GGP+VC K
Sbjct: 125 KSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGLEGGDSCQGDSGGPVVCSGK 184
Query: 182 EDPTTFFQVGIAAWSVVCTPDMPGLY 207
GI +W C + PG+Y
Sbjct: 185 LQ-------GIVSWGSGCAKNKPGVY 203
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIV WG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVEWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG 122
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ N+I LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL NNI L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL NNI L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 33 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 82
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 83 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 140
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+G+ GGP+VC
Sbjct: 141 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGNSGGPVVC 191
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 192 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 20 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 73
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 74 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 132
Query: 169 SADG 172
+ G
Sbjct: 133 LSSG 136
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 81 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 131
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIV WG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVKWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG 122
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 116/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA N DAC+GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG GC G Y V + KKWI
Sbjct: 222 MGIVSWGEGCDRKGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG + +C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KSSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG 122
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGDEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ N+I LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGDEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL NNI L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL NNI L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ +T NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG +D+C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D PGVY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ ET N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ ET N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 120/276 (43%), Gaps = 46/276 (16%)
Query: 287 VITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-- 344
++ GW + G PW + + + CGA+LI V+TAAHC+
Sbjct: 1 IVEGWDAEK-----GIAPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCILY 47
Query: 345 ----NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIAL 399
N D+ VR G+ ++RT E + + +IY+H + + + DIAL
Sbjct: 48 PPWDKNFTENDLLVRIGK-----HSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIAL 102
Query: 400 IILDFPFPVKNHIGLACTPN----SAEEYDDQNCIVTGWGKDK----FGVEGRYQSTLKK 451
+ L P P ++I C P+ ++ VTGWG + + S L+
Sbjct: 103 LKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQV 162
Query: 452 VEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKN 507
V + +V R VC+ R ++ D+ CA N DAC+GD GGP V +
Sbjct: 163 VNLPIVERPVCKASTR-------IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMK-SP 214
Query: 508 ERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+R+ Q+GIVSWG GC G Y V + K WI
Sbjct: 215 FNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWI 250
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGWDAEKGIAPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + +HP Y+ E L+ +IALLKL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVC 119
Query: 148 LPD----WNVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDKQTVTSLLRAGYKGRVTGWG 142
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ +HP Y+ E L+ +IALLKL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWG 142
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 32/251 (12%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV---NNIPVTDIKVRGG 357
G++PW ++I E V CG +L+ V++AAHC ++ ++K+
Sbjct: 10 GQWPWQVSI----------TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 358 EWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACT 417
+ D+ + + + T+ I H ++ + DIAL+ L P +I
Sbjct: 60 QLDSYSEDA--------KVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL 111
Query: 418 PNSAEEYDDQ-NCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR-KTRLGGVF 475
P + + + +C VTGWG V L+++EV L+ R C +
Sbjct: 112 PAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPH 171
Query: 476 KLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGV 531
+ + +CA GG +DAC+GD GGPL C ++ + GIVSWG CG+ + PGV
Sbjct: 172 FVQEDMVCAGYVEGG--KDACQGDSGGPLSCPVEG---LWYLTGIVSWGDACGARNRPGV 226
Query: 532 YVDVRKFKKWI 542
Y + WI
Sbjct: 227 YTLASSYASWI 237
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV---QYDVTYSVAAGEW 92
G + G++PW + + Y ++ CG SL+ L+AAHC + Y V G
Sbjct: 4 GSSAVAGQWPWQVSITYEGVHV----CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ + + D+ HP+Y E + +IALL+LS I F YI PI LP
Sbjct: 60 QLDSY----SEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQ 115
Query: 153 VTY-DSENCVITGWGR 167
++ + +C +TGWG
Sbjct: 116 ASFPNGLHCTVTGWGH 131
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 238 DVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWGR 293
D+ HP+Y E + +IALL+LS I F YI PI LP ++ + +C +TGWG
Sbjct: 75 DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGH 131
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 32/251 (12%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV---NNIPVTDIKVRGG 357
G++PW ++I E V CG +L+ V++AAHC ++ ++K+
Sbjct: 10 GQWPWQVSI----------TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 358 EWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACT 417
+ D+ + + + T+ I H ++ + DIAL+ L P +I
Sbjct: 60 QLDSYSEDA--------KVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL 111
Query: 418 PNSAEEYDDQ-NCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR-KTRLGGVF 475
P + + + +C VTGWG V L+++EV L+ R C +
Sbjct: 112 PAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPH 171
Query: 476 KLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGV 531
+ + +CA GG +DAC+GD GGPL C ++ + GIVSWG CG+ + PGV
Sbjct: 172 FVQEDMVCAGYVEGG--KDACQGDSGGPLSCPVEG---LWYLTGIVSWGDACGARNRPGV 226
Query: 532 YVDVRKFKKWI 542
Y + WI
Sbjct: 227 YTLASSYASWI 237
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV---QYDVTYSVAAGEW 92
G + G++PW + + Y ++ CG SL+ L+AAHC + Y V G
Sbjct: 4 GSSAVAGQWPWQVSITYEGVHV----CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ + + D+ HP+Y E + +IALL+LS I F YI PI LP
Sbjct: 60 QLDSY----SEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQ 115
Query: 153 VTY-DSENCVITGWGR 167
++ + +C +TGWG
Sbjct: 116 ASFPNGLHCTVTGWGH 131
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 238 DVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWGR 293
D+ HP+Y E + +IALL+LS I F YI PI LP ++ + +C +TGWG
Sbjct: 75 DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGH 131
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 117/269 (43%), Gaps = 41/269 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYD----DQNCIVTGWGKDK----FGVEGRYQSTLKKVEVKLVP 458
++I C P+ VTGWG K V S L+ V + +V
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
R VC+ R ++ D+ CA P++ DA +GD GGP V + +R+ Q
Sbjct: 170 RPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMK-SPFNNRWYQ 221
Query: 515 VGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+GIVSWG G D G Y V + KKWI
Sbjct: 222 MGIVSWGEGADRDGKYGFYTHVFRLKKWI 250
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDW----NVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 100/220 (45%), Gaps = 21/220 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TLI P+ V+TAAHC++N + + NN + V I++HE
Sbjct: 43 CGGTLITPNHVLTAAHCISNTLTYRVALG-------KNNLEVEDEAGSLYVGVDTIFVHE 95
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ + V NDIALI L + + I +AC P+ D C VTGWG + G
Sbjct: 96 KWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWG--RLYTNGPI 153
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQL 505
+ L++ +V C Q + G K ++ +CA G AC GD GGPL CQ
Sbjct: 154 AAELQQGLQPVVDYATCSQ---RDWWGTTVK--ETMVCAGGDGVISACNGDSGGPLNCQA 208
Query: 506 KNERDRFTQVGIVSWGIGCGSDT---PGVYVDVRKFKKWI 542
+ D GIVS+G G +T P V+ V + WI
Sbjct: 209 DGQWDVR---GIVSFGSGLSCNTFKKPTVFTRVSAYIDWI 245
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + +PW + L Y + N CG +LI PN LTAAHC+ +TY VA G+
Sbjct: 15 VGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGK-- 72
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWN 152
N + V + +H +++ + N+IAL+KL+ ++ D I CLP + +
Sbjct: 73 -NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGS 131
Query: 153 VTYDSENCVITGWGRDSADG 172
+ C +TGWGR +G
Sbjct: 132 LLPQDYPCFVTGWGRLYTNG 151
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 209 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDY 268
+TY VA G+ N + V + +H +++ + N+IAL+KL+ ++ D
Sbjct: 64 LTYRVALGK---NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDT 120
Query: 269 IHPICLP-DWNVTYDSENCVITGWGR 293
I CLP + ++ C +TGWGR
Sbjct: 121 IQVACLPSEGSLLPQDYPCFVTGWGR 146
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 32/251 (12%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV---NNIPVTDIKVRGG 357
G++PW ++I E V CG +L+ V++AAHC ++ ++K+
Sbjct: 10 GQWPWQVSI----------TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 358 EWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACT 417
+ D+ + + + T+ I H ++ + DIAL+ L P +I
Sbjct: 60 QLDSYSEDA--------KVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL 111
Query: 418 PNSAEEYDDQ-NCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR-KTRLGGVF 475
P + + + +C VTGWG V L+++EV L+ R C +
Sbjct: 112 PAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPH 171
Query: 476 KLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGV 531
+ + +CA GG +DAC+GD GGPL C ++ + GIVSWG CG+ + PGV
Sbjct: 172 FVQEDMVCAGYVEGG--KDACQGDSGGPLSCPVEG---LWYLTGIVSWGDACGARNRPGV 226
Query: 532 YVDVRKFKKWI 542
Y + WI
Sbjct: 227 YTLASSYASWI 237
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV---QYDVTYSVAAGEW 92
G + G++PW + + Y ++ CG SL+ L+AAHC + Y V G
Sbjct: 4 GSSAVAGQWPWQVSITYEGVHV----CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ + + D+ HP+Y E + +IALL+LS I F YI PI LP N
Sbjct: 60 QLD----SYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAN 115
Query: 153 VTY-DSENCVITGWGR 167
++ + +C +TGWG
Sbjct: 116 ASFPNGLHCTVTGWGH 131
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 238 DVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWGR 293
D+ HP+Y E + +IALL+LS I F YI PI LP N ++ + +C +TGWG
Sbjct: 75 DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANASFPNGLHCTVTGWGH 131
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 31/249 (12%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE+PW ++ DGS +CGATLI +++AAHC +
Sbjct: 10 GEWPWQASL-----QWDGS-----HRCGATLINATWLVSAAHCFTTYK-NPARWTASFGV 58
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
TI ++ +R + +I +HE ++ + DI+L L P P N + C P++
Sbjct: 59 TIKPSK--------MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDA 110
Query: 421 AEEYDDQNCI-VTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ E+ + + VTG+G K +G Q+ L++ +V L+ C + +
Sbjct: 111 SYEFQPGDVMFVTGFGALKN--DGYSQNHLRQAQVTLIDATTCNEPQAYND-----AITP 163
Query: 480 SFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRK 537
+CA + DAC+GD GGPLV + RD + GIVSWG C + PGVY V
Sbjct: 164 RMLCAGSLEGKTDACQGDSGGPLVSS--DARDIWYLAGIVSWGDECAKPNKPGVYTRVTA 221
Query: 538 FKKWILDNS 546
+ WI +
Sbjct: 222 LRDWITSKT 230
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G GE+PW L + + +CGA+LI ++AAHC TY A W
Sbjct: 2 VGGTEVEEGEWPWQASLQWDGSH----RCGATLINATWLVSAAHCF---TTYKNPA-RWT 53
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ V +R + + +H Y + + +I+L +LSS + + + +H +CLPD +
Sbjct: 54 ASFGVTIKPSK-MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASY 112
Query: 154 TYDSENCV-ITGWGRDSADG 172
+ + + +TG+G DG
Sbjct: 113 EFQPGDVMFVTGFGALKNDG 132
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 233 RRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV-ITGW 291
+R + + +H Y + + +I+L +LSS + + + +H +CLPD + + + + +TG+
Sbjct: 66 KRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGF 125
Query: 292 G 292
G
Sbjct: 126 G 126
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 36/222 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQIYI 384
CG +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--------QFINAAKIIT 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 73 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSGS-S 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPL 501
Y S L+ ++ ++ + C+ ++ + IC GG +D+C+GD GGP+
Sbjct: 131 YPSLLQCLKAPVLSNSSCKSSYPG-------QITGNMICVGFLQGG--KDSCQGDSGGPV 181
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
VC + + GIVSWG GC + PGVY V + WI
Sbjct: 182 VCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 216
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ Q + + HPN++
Sbjct: 25 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNID----VLEGNEQFINAAKIITHPNFNG 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
TL+N+I L+KLSS + + + LP +E C+I+GWG + G
Sbjct: 79 NTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSG 128
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + + LP +E C+I+GW
Sbjct: 63 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGW 121
Query: 292 GRDSAETFFGEYPWMMAIL 310
G ++ YP ++ L
Sbjct: 122 GN--TKSSGSSYPSLLQCL 138
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 37/244 (15%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP-VTDIKVRGGE 358
G+YP+ +++ + GS +CGA+++ + V+TAAHCV+ + + +KV G
Sbjct: 9 VGKYPYQVSLRLS-----GS-----HRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVG- 57
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTP 418
TN ++ E V +++N++ + ND+AL+ L P + +
Sbjct: 58 ----TNYLSESGDVYDVEDAV----VNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLS 109
Query: 419 NSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLH 478
+ E+ + C +TGWG + G G + L+++E+ + P+ C++ +++
Sbjct: 110 TNDEDLESNPCTLTGWGSTRLG--GNTPNALQEIELIVHPQKQCERDQ--------WRVI 159
Query: 479 DSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKF 538
DS IC + AC GD GGPLV Q+GIVS+G C P VY V F
Sbjct: 160 DSHICTLTKRGEGACHGDSGGPLVAN-------GAQIGIVSFGSPCALGEPDVYTRVSSF 212
Query: 539 KKWI 542
WI
Sbjct: 213 VSWI 216
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 30/153 (19%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV-----------QYD 82
+ G++ G++P+ + L R +CGAS++ N LTAAHCV
Sbjct: 2 VGGKDAPVGKYPYQVSL----RLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVG 57
Query: 83 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDY 142
Y +G+ + DV D ++ NY L N++AL+ L++ I F+D
Sbjct: 58 TNYLSESGDVY---------------DVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDL 102
Query: 143 IHPICLPDWNVTYDSENCVITGWGRDSADGGGP 175
+ PI L + +S C +TGWG G P
Sbjct: 103 VQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTP 135
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
DV D ++ NY L N++AL+ L++ I F+D + PI L + +S C +TGWG
Sbjct: 69 DVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWG 126
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 99/220 (45%), Gaps = 20/220 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TLI + V+TAAHC++N + V NN + V I++H+
Sbjct: 30 CGGTLIASNFVLTAAHCISNTRTYRVAVG-------KNNLEVEDEEGSLFVGVDTIHVHK 82
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ A + NDIALI L + + I +AC P D C VTGWG+ G
Sbjct: 83 RWNALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGR--LWTNGPI 140
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQL 505
L++ +V C R G F++ + +CA G AC GD GGPL CQL
Sbjct: 141 ADKLQQGLQPVVDHATCS---RIDWWG--FRVKKTMVCAGGDGVISACNGDSGGPLNCQL 195
Query: 506 KNERDRFTQVGIVSWGIGCGSDT---PGVYVDVRKFKKWI 542
+N + GIVS+G G +T P VY V + WI
Sbjct: 196 EN--GSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWI 233
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + +PW + L Y K + CG +LI N LTAAHC+ TY VA G+
Sbjct: 2 VGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISNTRTYRVAVGK-- 59
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
N + V + +H ++ L N+IAL+KL+ +++ D I CLP+ +
Sbjct: 60 -NNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEKDS 118
Query: 154 TYDSEN-CVITGWGRDSADG 172
+ C +TGWGR +G
Sbjct: 119 LLPKDYPCYVTGWGRLWTNG 138
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 239 VRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVITGWGR 293
+ +H ++ L N+IAL+KL+ +++ D I CLP+ + + C +TGWGR
Sbjct: 78 IHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGR 133
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQIYI 384
CG +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 33 CGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--------QFINAAKIIT 80
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 81 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTK-SSGSS 138
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQ 504
Y S L+ ++ ++ + C+ G + + F+ GG +D+C+GD GGP+VC
Sbjct: 139 YPSLLQCLKAPVLSDSSCKSSYPGQITGNMICV--GFL--EGG--KDSCQGDSGGPVVCN 192
Query: 505 LKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + GIVSWG GC + PGVY V + WI
Sbjct: 193 GQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 224
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ + Q + + HPN++
Sbjct: 33 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNIDVL----EGNEQFINAAKIITHPNFNG 86
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
TL+N+I L+KLSS + + + LP +E C+I+GWG + G
Sbjct: 87 NTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSG 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + + LP +E C+I+GW
Sbjct: 71 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGW 129
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGS 319
G ++ YP ++ L + D S
Sbjct: 130 GN--TKSSGSSYPSLLQCLKAPVLSDSS 155
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 36/222 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQIYI 384
CG +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--------QFINAAKIIT 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 73 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTK-SSGSS 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPL 501
Y S L+ ++ ++ + C+ ++ + IC GG +D+C+GD GGP+
Sbjct: 131 YPSLLQCLKAPVLSDSSCKSSYPG-------QITGNMICVGFLEGG--KDSCQGDSGGPV 181
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
VC + + GIVSWG GC + PGVY V + WI
Sbjct: 182 VCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 216
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ Q + + HPN++
Sbjct: 25 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNID----VLEGNEQFINAAKIITHPNFNG 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
TL+N+I L+KLSS + + + LP +E C+I+GWG + G
Sbjct: 79 NTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSG 128
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + + LP +E C+I+GW
Sbjct: 63 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGW 121
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGS 319
G ++ YP ++ L + D S
Sbjct: 122 GN--TKSSGSSYPSLLQCLKAPVLSDSS 147
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE + N E F ++I H
Sbjct: 25 CGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI--NVLEGNEQF----VNAAKIIKHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
NF+ KT+ NDI LI L P + + P+S Q C+++GWG +
Sbjct: 75 NFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWG-NTLSSGVNEP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ ++ L+P+ C+ K+ D+ +C GG + +C+GD GGP+VC
Sbjct: 133 DLLQCLDAPLLPQADCEASYPG-------KITDNMVCVGFLEGG--KGSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
+ + GIVSWG GC D P VY V + WI D
Sbjct: 184 NGELQ-------GIVSWGYGCALPDNPDVYTKVCNYVDWIQD 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + Q
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHC--YKSRIQVRLGEHNINVL----EGNEQFV 65
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ + HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 66 NAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 LSSG 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
HPN+ +TL N+I L+KLSS + + + + LP ++ C+I+GWG
Sbjct: 73 HPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ-CLISGWGN 123
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 36/222 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQIYI 384
CG +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--------QFINAAKIIT 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 73 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSGS-S 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPL 501
Y S L+ ++ ++ + C+ ++ + IC GG +D+C+GD GGP+
Sbjct: 131 YPSLLQCLKAPVLSDSSCKSSYPG-------QITGNMICVGFLEGG--KDSCQGDSGGPV 181
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
VC + + GIVSWG GC + PGVY V + WI
Sbjct: 182 VCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 216
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ + Q + + HPN++
Sbjct: 25 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNIDVL----EGNEQFINAAKIITHPNFNG 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
TL+N+I L+KLSS + + + LP +E C+I+GWG + G
Sbjct: 79 NTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSG 128
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + + LP +E C+I+GW
Sbjct: 63 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGW 121
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGS 319
G ++ YP ++ L + D S
Sbjct: 122 GN--TKSSGSSYPSLLQCLKAPVLSDSS 147
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 36/222 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQIYI 384
CG +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--------QFINAAKIIT 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 73 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSS-GSS 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPL 501
Y S L+ ++ ++ + C+ ++ + IC GG +D+C+GD GGP+
Sbjct: 131 YPSLLQCLKAPVLSDSSCKSAYPG-------QITGNMICVGFLEGG--KDSCQGDSGGPV 181
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
VC + + GIVSWG GC + PGVY V + WI
Sbjct: 182 VCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 216
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ Q + + HPN++
Sbjct: 25 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNID----VLEGNEQFINAAKIITHPNFNG 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
TL+N+I L+KLSS + + + LP +E C+I+GWG + G
Sbjct: 79 NTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTKSSG 128
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + + LP +E C+I+GW
Sbjct: 63 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGW 121
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGS 319
G ++ YP ++ L + D S
Sbjct: 122 GN--TKSSGSSYPSLLQCLKAPVLSDSS 147
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 120/276 (43%), Gaps = 46/276 (16%)
Query: 287 VITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-- 344
++ GW + G PW + + + CGA+LI V+TAAHC+
Sbjct: 1 IVEGWDAEK-----GIAPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCILY 47
Query: 345 ----NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIAL 399
N D+ VR G+ ++RT E + + +IY+H + + + DIAL
Sbjct: 48 PPWDKNFTENDLLVRIGK-----HSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIAL 102
Query: 400 IILDFPFPVKNHIGLACTPN----SAEEYDDQNCIVTGWGKDK----FGVEGRYQSTLKK 451
+ L P P ++I C P+ ++ VTGWG + + S L+
Sbjct: 103 LKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQV 162
Query: 452 VEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLVCQLKN 507
V + +V R VC+ R ++ D+ CA N DAC+GD GGP V +
Sbjct: 163 VNLPIVERPVCKASTR-------IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMK-SP 214
Query: 508 ERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+R+ Q+GIVS G GC G Y V + K+WI
Sbjct: 215 FNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWI 250
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGWDAEKGIAPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + +HP Y+ E L+ +IALLKL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVC 119
Query: 148 LPD----WNVTYDSENCVITGWG 166
LPD ++ +TGWG
Sbjct: 120 LPDKQTVTSLLRAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ +HP Y+ E L+ +IALLKL + F DYIHP+CLPD ++ +TGWG
Sbjct: 84 IYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWG 142
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 36/222 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQIYI 384
CG +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--------QFINAAKIIT 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 73 HPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTE-CLISGWGNTKSS-GSS 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPL 501
Y S L+ ++ ++ + C+ ++ + IC GG +D+C+GD GGP+
Sbjct: 131 YPSLLQCLKAPVLSDSSCKSSYPG-------QITGNMICVGFLEGG--KDSCQGDSGGPV 181
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
VC + + GIVSWG GC + PGVY V + WI
Sbjct: 182 VCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 216
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ Q + + HPN++
Sbjct: 25 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNID----VLEGNEQFINAAKIITHPNFNG 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
TL+N+I L+KLSS + + LP +E C+I+GWG + G
Sbjct: 79 NTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTE-CLISGWGNTKSSG 128
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + LP +E C+I+GW
Sbjct: 63 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTE-CLISGW 121
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGS 319
G ++ YP ++ L + D S
Sbjct: 122 GN--TKSSGSSYPSLLQCLKAPVLSDSS 147
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 45/257 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G++PW + +L KI+ CG ++I V+TAAHC+ P I V GE++
Sbjct: 10 GQFPWQV-LLNGKIDAF---------CGGSIINEKWVVTAAHCIE--PGVKITVVAGEYN 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKT--VFNDIALIILDFPFPVKNHIGLACTP 418
T T+ Q R V + H ++ A +DIAL+ LD P + +++ C
Sbjct: 58 TEETEPTE------QRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIA 111
Query: 419 NSAEEYDD-----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
+ +EY + + V+GWG+ GR + L+ ++V LV R C LR T+
Sbjct: 112 D--KEYTNIFLKFGSGYVSGWGR--VFNRGRSATILQYLKVPLVDRATC---LRSTK--- 161
Query: 474 VFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP- 529
F ++ + CA GG +D+C+GD GGP V ++ E F GI+SWG C
Sbjct: 162 -FTIYSNMFCAGFHEGG--KDSCQGDSGGPHVTEV--EGTSFL-TGIISWGEECAVKGKY 215
Query: 530 GVYVDVRKFKKWILDNS 546
G+Y V ++ WI + +
Sbjct: 216 GIYTKVSRYVNWIKEKT 232
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G N G+FPW ++L ++ F CG S+I +TAAHC++ V +V AGE+
Sbjct: 2 VGGENAKPGQFPWQVLL---NGKIDAF-CGGSIINEKWVVTAAHCIEPGVKITVVAGEYN 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLPD- 150
QRR+V+ H +Y + ++IALL+L + + Y+ PIC+ D
Sbjct: 58 TE----ETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADK 113
Query: 151 --WNVTYDSENCVITGWGR 167
N+ + ++GWGR
Sbjct: 114 EYTNIFLKFGSGYVSGWGR 132
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 232 QRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLPD---WNVTYDSENC 286
QRR+V+ H +Y + ++IALL+L + + Y+ PIC+ D N+ +
Sbjct: 66 QRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 287 VITGWGR 293
++GWGR
Sbjct: 126 YVSGWGR 132
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 28/218 (12%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ-DACKGDGGGPLVCQL 505
LK ++ ++ + C+ ++ + CA G + D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAYGLEGKGDSCQGDSGGPVVCSG 185
Query: 506 KNERDRFTQVGIVSWGIGC-GSDTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 186 KLQ-------GIVSWGSGCQAKNKPGVYTKVCNYVSWI 216
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVF 325
YP ++ L I D G +T N+F
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSTSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAIL--------TNKINKDGSVTENVFQCG 328
YP ++ L + K G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSTSSCKSAYPGQITSNMFCAG 164
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V+TAAHCV+ + ++R G + T ++S + +H
Sbjct: 26 CGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITS---------SLSSVRVHP 76
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLA-CTPNSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ ND+A++ L P +IG A + ++ + V GWG G
Sbjct: 77 SYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS-ST 133
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLV 502
L KV V +V R C+ Q G + + CA SGG +D+C+GD GGP+V
Sbjct: 134 PVNLLKVTVPIVSRATCRAQY------GTSAITNQMFCAGVSSGG--KDSCQGDSGGPIV 185
Query: 503 CQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
T +G VSWG GC + GVY V + +I
Sbjct: 186 ------DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G+FP+++ + RN + CG SL+ N LTAAHCV A +
Sbjct: 2 VGGTSASAGDFPFIVSI---SRNGGPW-CGGSLLNANTVLTAAHCVS-----GYAQSGFQ 52
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI-HPICLPDWN 152
I + VR+HP+YS N++A+LKLS++I I + +
Sbjct: 53 IRAGSLSRTSGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGS 110
Query: 153 VTYDSENCVITGWGRDSADG 172
+ + GWG S G
Sbjct: 111 DPVAGSSATVAGWGATSEGG 130
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V+TAAHCV+ + ++R G + T ++S + +H
Sbjct: 26 CGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITS---------SLSSVRVHP 76
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLA-CTPNSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ ND+A++ L P +IG A + ++ + V GWG G
Sbjct: 77 SYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS-ST 133
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLV 502
L KV V +V R C+ Q G + + CA SGG +D+C+GD GGP+V
Sbjct: 134 PVNLLKVTVPIVSRATCRAQY------GTSAITNQMFCAGVSSGG--KDSCQGDSGGPIV 185
Query: 503 CQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
T +G VSWG GC + GVY V + +I
Sbjct: 186 ------DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ G + G+FP+++ + RN + CG SL+ N LTAAHCV + + AG
Sbjct: 2 VGGTSASAGDFPFIVSI---SRNGGPW-CGGSLLNANTVLTAAHCVSGYAQSGFQIRAGS 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI-HPICLPD 150
+ VR+HP+YS N++A+LKLS++I I +
Sbjct: 58 L-------SRTSGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAAS 108
Query: 151 WNVTYDSENCVITGWGRDSADG 172
+ + + GWG S G
Sbjct: 109 GSDPVAGSSATVAGWGATSEGG 130
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V+TAAHCV+ + ++R G + T ++S + +H
Sbjct: 26 CGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITS---------SLSSVRVHP 76
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLA-CTPNSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ ND+A++ L P +IG A + ++ + V GWG G
Sbjct: 77 SYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS-ST 133
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLV 502
L KV V +V R C+ Q G + + CA SGG +D+C+GD GGP+V
Sbjct: 134 PVNLLKVTVPIVSRATCRAQY------GTSAITNQMFCAGVSSGG--KDSCQGDXGGPIV 185
Query: 503 CQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
T +G VSWG GC + GVY V + +I
Sbjct: 186 ------DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ G + G+FP+++ + RN + CG SL+ N LTAAHCV + + AG
Sbjct: 2 VGGTSASAGDFPFIVSI---SRNGGPW-CGGSLLNANTVLTAAHCVSGYAQSGFQIRAGS 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI-HPICLPD 150
+ VR+HP+YS N++A+LKLS++I I +
Sbjct: 58 L-------SRTSGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAAS 108
Query: 151 WNVTYDSENCVITGWGRDSADG 172
+ + + GWG S G
Sbjct: 109 GSDPVAGSSATVAGWGATSEGG 130
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASVSLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 AGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + + LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASVSLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + + LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASVSLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 45 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 94
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 95 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 152
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 153 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDAGGPVVC 203
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 204 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 236
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 32 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 89
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 90 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 144
Query: 169 SADG 172
+ G
Sbjct: 145 KSSG 148
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 92 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 149
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 150 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 184
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 39 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 88
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 89 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 146
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 147 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 197
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 198 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 230
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 26 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 83
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 84 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 138
Query: 169 SADG 172
+ G
Sbjct: 139 KSSG 142
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 86 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 143
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 144 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 178
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 45 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 94
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 95 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 152
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 153 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 203
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 204 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 236
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 32 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 89
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 90 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 144
Query: 169 SADG 172
+ G
Sbjct: 145 KSSG 148
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 92 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 149
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 150 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 184
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 31 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 80
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 81 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 138
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 139 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 189
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 190 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 222
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 18 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 75
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 76 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 130
Query: 169 SADG 172
+ G
Sbjct: 131 KSSG 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 78 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 135
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 136 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 170
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 30 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 80 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 137
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 138 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 188
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 189 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 221
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 17 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 74
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 75 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 129
Query: 169 SADG 172
+ G
Sbjct: 130 KSSG 133
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 77 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 134
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 135 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 169
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 37/235 (15%)
Query: 327 CGATLILPHVVMTAAHCVNN--------------IPVTDIKVRGGEWDTITNNRTDREPF 372
CG +L+ ++TAAHC++ + +D K+ G+ + ++ +
Sbjct: 27 CGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENE---- 82
Query: 373 PYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLA-CTPNSAEEYDDQNCIV 431
Q V +H ++ T ND+AL+ L PV N + C P ++ + IV
Sbjct: 83 --QHLGVKHTTLHPQYDPNTFENDVALVEL-LESPVLNAFVMPICLPEGPQQ-EGAMVIV 138
Query: 432 TGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGP 488
+GWGK R+ TL ++E+ +V + CQ+ + K+ ICA GG
Sbjct: 139 SGWGKQFLQ---RFPETLMEIEIPIVDHSTCQKAYAPLKK----KVTRDMICAGEKEGG- 190
Query: 489 NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
+DAC GD GGP+V L ER ++ VG VSWG CG D GVY + K WI
Sbjct: 191 -KDACAGDSGGPMVT-LNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 243
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--------- 84
+GR G PW+ +L + N + F CG SL+G + +TAAHC+ +
Sbjct: 2 FNGRPAQKGTTPWIAMLSHL--NGQPF-CGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDS 58
Query: 85 -------YSVAAGE-WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSN 136
+ + G+ W + Q V +HP Y T EN++AL++L +
Sbjct: 59 DLLSPSDFKIILGKHWRLR-----SDENEQHLGVKHTTLHPQYDPNTFENDVALVELLES 113
Query: 137 IDFDDYIHPICLPDWNVTYDSENCVITGWGR 167
+ ++ PICLP+ + +++GWG+
Sbjct: 114 PVLNAFVMPICLPE-GPQQEGAMVIVSGWGK 143
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q V +HP Y T EN++AL++L + + ++ PICLP+ + +++GW
Sbjct: 83 QHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPE-GPQQEGAMVIVSGW 141
Query: 292 GRDSAETF 299
G+ + F
Sbjct: 142 GKQFLQRF 149
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLIDSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++++ T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYDSNTLNNDIMLIKLKSAASLDSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLIDSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y + TL N+I L+KL S D + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYDSNTLNNDIMLIKLKSAASLDSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y + TL N+I L+KL S D + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYDSNTLNNDIMLIKLKSAASLDSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDXGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 327 CGATLILPHVVMTAAHCVNN--------------IPVTDIKV-RGGEWDTITNNRTDREP 371
CG +L+ ++TAAHC++ + +D K+ G W R+D
Sbjct: 182 CGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRL----RSDENE 237
Query: 372 FPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLA-CTPNSAEEYDDQNCI 430
Q V +H ++ T ND+AL+ L PV N + C P ++ + I
Sbjct: 238 ---QHLGVKHTTLHPQYDPNTFENDVALVEL-LESPVLNAFVMPICLPEGPQQ-EGAMVI 292
Query: 431 VTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGG 487
V+GWGK R+ TL ++E+ +V + CQ+ + K+ ICA GG
Sbjct: 293 VSGWGKQFLQ---RFPETLMEIEIPIVDHSTCQKAYAPLKK----KVTRDMICAGEKEGG 345
Query: 488 PNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
+DAC GD GGP+V L ER ++ VG VSWG CG D GVY + K WI
Sbjct: 346 --KDACAGDSGGPMV-TLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 26/152 (17%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--------- 84
+GR G PW+ +L + N + F CG SL+G + +TAAHC+ +
Sbjct: 157 FNGRPAQKGTTPWIAMLSHL--NGQPF-CGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDS 213
Query: 85 -------YSVAAGE-WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSN 136
+ + G+ W + Q V +HP Y T EN++AL++L +
Sbjct: 214 DLLSPSDFKIILGKHWRLRS-----DENEQHLGVKHTTLHPQYDPNTFENDVALVELLES 268
Query: 137 IDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ ++ PICLP+ + +++GWG+
Sbjct: 269 PVLNAFVMPICLPE-GPQQEGAMVIVSGWGKQ 299
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q V +HP Y T EN++AL++L + + ++ PICLP+ + +++GW
Sbjct: 238 QHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPE-GPQQEGAMVIVSGW 296
Query: 292 GRDSAETF 299
G+ + F
Sbjct: 297 GKQFLQRF 304
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G++PW + +L K++ CG +++ ++TAAHCV I V GE +
Sbjct: 10 GQFPWQV-VLNGKVDAF---------CGGSIVNEKWIVTAAHCVET--GVKITVVAGEHN 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAK--TVFNDIALIILDFPFPVKNHIGLACTP 418
T+ Q+R V +I H NF A T +DIAL+ LD P + +++ C
Sbjct: 58 IEETEHTE------QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIA 111
Query: 419 NSAEEYDD-----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
+ +EY + + V+GWG+ +GR L+ + V LV R C LR T+
Sbjct: 112 D--KEYTNIFLKFGSGYVSGWGRVFH--KGRAALVLQYLRVPLVDRATC---LRSTK--- 161
Query: 474 VFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP- 529
F + ++ CA GG +D+C+GD GGP V ++ E F GI+SWG C
Sbjct: 162 -FTITNNMFCAGFHEGG--RDSCQGDSGGPHVTEV--EGTSFL-TGIISWGEECAMKGKY 215
Query: 530 GVYVDVRKFKKWILDNS 546
G+Y V ++ WI + +
Sbjct: 216 GIYTKVSRYVNWIKEKT 232
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G+FPW +VL ++ F CG S++ +TAAHCV+ V +V AGE
Sbjct: 2 VGGEDAKPGQFPWQVVL---NGKVDAF-CGGSIVNEKWIVTAAHCVETGVKITVVAGEHN 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLPD- 150
I Q+R+V+ + H N+ + T ++IALL+L + + Y+ PIC+ D
Sbjct: 58 IE----ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 151 --WNVTYDSENCVITGWGRDSADGGGPLV 177
N+ + ++GWGR G LV
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRAALV 142
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 209 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFD 266
V +V AGE I Q+R+V+ + H N+ + T ++IALL+L + +
Sbjct: 47 VKITVVAGEHNIE----ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLN 102
Query: 267 DYIHPICLPD---WNVTYDSENCVITGWGR 293
Y+ PIC+ D N+ + ++GWGR
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGR 132
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G++PW + +L K++ CG +++ ++TAAHCV I V GE +
Sbjct: 10 GQFPWQV-VLNGKVDA---------FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHN 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAK--TVFNDIALIILDFPFPVKNHIGLACTP 418
T+ Q+R V +I H NF A T +DIAL+ LD P + +++ C
Sbjct: 58 IEETEHTE------QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIA 111
Query: 419 NSAEEYDD-----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
+ +EY + + V+GWG+ +GR L+ + V LV R C LR T+
Sbjct: 112 D--KEYTNIFLKFGSGYVSGWGRVFH--KGRSALVLQYLRVPLVDRATC---LRSTK--- 161
Query: 474 VFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP- 529
F + ++ CA GG +D+C+GD GGP V ++ E F GI+SWG C
Sbjct: 162 -FTITNNMFCAGFHEGG--RDSCQGDSGGPHVTEV--EGTSFL-TGIISWGEECAMKGKY 215
Query: 530 GVYVDVRKFKKWILDNS 546
G+Y V ++ WI + +
Sbjct: 216 GIYTKVSRYVNWIKEKT 232
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G+FPW +VL ++ F CG S++ +TAAHCV+ V +V AGE
Sbjct: 2 VGGEDAKPGQFPWQVVL---NGKVDAF-CGGSIVNEKWIVTAAHCVETGVKITVVAGEHN 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLPD- 150
I Q+R+V+ + H N+ + T ++IALL+L + + Y+ PIC+ D
Sbjct: 58 IE----ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 151 --WNVTYDSENCVITGWGRDSADGGGPLV 177
N+ + ++GWGR G LV
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALV 142
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 209 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFD 266
V +V AGE I Q+R+V+ + H N+ + T ++IALL+L + +
Sbjct: 47 VKITVVAGEHNIE----ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLN 102
Query: 267 DYIHPICLPD---WNVTYDSENCVITGWGR 293
Y+ PIC+ D N+ + ++GWGR
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGR 132
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 328 GATLILPHVVMTAAHCV--NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH 385
G LI + V+TAAH V N P + + + ++ T ++IH
Sbjct: 106 GGALINEYWVLTAAHVVEGNREPTMYVGSTSVQTSRLAKSKM---------LTPEHVFIH 156
Query: 386 ENF------EAKTVF-NDIALIILDFPFPVKNHIGLACTPNSAEEY---DDQNCIVTGWG 435
+ E +T F NDIAL+ L P + + C P ++ +Y D +++GWG
Sbjct: 157 PGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWG 216
Query: 436 KDKFGVEGRYQST-LKKVEVKLVPRNVCQQQL--RKTRLGGVFKLHDSFICASGGPNQDA 492
+ E R ++ LK + + P C++ + T + + ICA G D+
Sbjct: 217 R----TEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDS 272
Query: 493 CKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWIL 543
CKGD GG Q N++ +F G+VSWG CG T G+Y V+ + WI+
Sbjct: 273 CKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG--TYGLYTRVKNYVDWIM 321
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G + FPW + + G +LI LTAAH V+ + ++ G
Sbjct: 84 IGGSDADIKNFPWQVFF-------DNPWAGGALINEYWVLTAAHVVEGNREPTMYVGS-- 134
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYS-------TETLENNIALLKLSSNIDFDDYIHPI 146
+ + V IHP + +N+IAL++L + + PI
Sbjct: 135 -TSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPI 193
Query: 147 CLPDWNVTY---DSENCVITGWGR 167
CLP + Y D + +I+GWGR
Sbjct: 194 CLPGTSSDYNLMDGDLGLISGWGR 217
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 239 VRIHPNYS-------TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY---DSENCVI 288
V IHP + +N+IAL++L + + PICLP + Y D + +I
Sbjct: 153 VFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLI 212
Query: 289 TGWGR 293
+GWGR
Sbjct: 213 SGWGR 217
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 24/251 (9%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE+PW ++ + + GS + + CGA+L+ ++A+HCV+ + +I+V G W
Sbjct: 10 GEFPWQLS----QQRQSGSWSHS---CGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQ 62
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFPFPVKNHIGLACTP 418
+ T Q V +HEN+ A T NDIA++ L + +I A P
Sbjct: 63 QSDTSGT-------QTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLP 115
Query: 419 -NSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKL 477
N+ +Y C+++GWG+ L+K + ++ C + G +
Sbjct: 116 ANNNNDYAGTTCVISGWGRTDG--TNNLPDILQKSSIPVITTAQCTAAMVGV---GGANI 170
Query: 478 HDSFICASG-GPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGSDTPGVYVDV 535
D+ IC N AC GD GGPL C R +VS G+G C D P VY V
Sbjct: 171 WDNHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRV 230
Query: 536 RKFKKWILDNS 546
+ WI DNS
Sbjct: 231 SAYLGWIGDNS 241
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV--TYSVAAGE 91
I G N GEFPW L + + CGASL+ AL+A+HCV + V AG
Sbjct: 2 IGGTNASPGEFPWQLSQQRQSGSWSH-SCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLP 149
W Q +V +H NY T + N+IA+L L+++I I LP
Sbjct: 61 WQ-----QSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLP 115
Query: 150 -DWNVTYDSENCVITGWGR 167
+ N Y CVI+GWGR
Sbjct: 116 ANNNNDYAGTTCVISGWGR 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 232 QRRDVLDVRIHPNYS--TETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVI 288
Q +V +H NY T + N+IA+L L+++I I LP + N Y CVI
Sbjct: 70 QTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVI 129
Query: 289 TGWGR 293
+GWGR
Sbjct: 130 SGWGR 134
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G++PW + +L K++ CG +++ ++TAAHCV I V GE +
Sbjct: 10 GQFPWQV-VLNGKVDAF---------CGGSIVNEKWIVTAAHCVET--GVKITVVAGEHN 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAK--TVFNDIALIILDFPFPVKNHIGLACTP 418
T+ Q+R V +I H N+ A T +DIAL+ LD P + +++ C
Sbjct: 58 IEETEHTE------QKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIA 111
Query: 419 NSAEEYDD-----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
+ +EY + + V+GWG+ +GR L+ + V LV R C LR T+
Sbjct: 112 D--KEYTNIFLKFGSGYVSGWGRVFH--KGRSALVLQYLRVPLVDRATC---LRSTK--- 161
Query: 474 VFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP- 529
F + ++ CA GG +D+C+GD GGP V ++ E F GI+SWG C
Sbjct: 162 -FTITNNMFCAGFHEGG--RDSCQGDSGGPHVTEV--EGTSFL-TGIISWGEECAMKGKY 215
Query: 530 GVYVDVRKFKKWILDNS 546
G+Y V ++ WI + +
Sbjct: 216 GIYTKVSRYVNWIKEKT 232
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G+FPW +VL ++ F CG S++ +TAAHCV+ V +V AGE
Sbjct: 2 VGGEDAKPGQFPWQVVL---NGKVDAF-CGGSIVNEKWIVTAAHCVETGVKITVVAGEHN 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLPD- 150
I Q+R+V+ + H NY + T ++IALL+L + + Y+ PIC+ D
Sbjct: 58 IE----ETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 151 --WNVTYDSENCVITGWGRDSADGGGPLV 177
N+ + ++GWGR G LV
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALV 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 209 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFD 266
V +V AGE I Q+R+V+ + H NY + T ++IALL+L + +
Sbjct: 47 VKITVVAGEHNIE----ETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLN 102
Query: 267 DYIHPICLPD---WNVTYDSENCVITGWGR 293
Y+ PIC+ D N+ + ++GWGR
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGR 132
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 107/233 (45%), Gaps = 38/233 (16%)
Query: 325 FQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPF-----PYQERTV 379
+ CG L+ P+ V+TAAHC ++ + KV G+ + + + + F P+ +
Sbjct: 24 YLCGGVLLDPNWVLTAAHCYDD----NYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNM 79
Query: 380 SQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGK--- 436
S + H F ND+ L+ L P + + + P + E C+ +GWG
Sbjct: 80 SLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLP-TEEPKLGSTCLASGWGSITP 138
Query: 437 DKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDAC 493
KF ++ L V +KL+P C + + K+ D+ +CA GG +D C
Sbjct: 139 TKF----QFTDDLYCVNLKLLPNEDCAK-------AHIEKVTDAMLCAGEMDGG--KDTC 185
Query: 494 KGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRKFKKWILD 544
KGD GGPL+C D Q GI SWG CG D PGVY + KF WI D
Sbjct: 186 KGDSGGPLIC------DGVLQ-GITSWGHTPCGEPDMPGVYTKLNKFTSWIKD 231
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
PW + ++ Y + + CG L+ PN LTAAHC YD Y V W +
Sbjct: 13 PWHVAVYRYTQ----YLCGGVLLDPNWVLTAAHC--YDDNYKV----WLGKNNLFKDEPS 62
Query: 105 XQRRDVLDVRIHPNYSTETLE-----------NNIALLKLSSNIDFDDYIHPICLPDWNV 153
Q R V HP ++ + N++ LL+LS D D + PI LP
Sbjct: 63 AQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEP 122
Query: 154 TYDSENCVITGWG 166
S C+ +GWG
Sbjct: 123 KLGS-TCLASGWG 134
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 39/246 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE PW A+L N+ EN CG T++ ++TAAHC+ KVR G+
Sbjct: 10 GEVPWQ-ALLINE--------ENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGD-- 56
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
T++E V + H F +T DIA++ L P + ++ A P +
Sbjct: 57 ----RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP-T 111
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
A C+++GWG + Y L+ ++ ++ + C+ K+ +
Sbjct: 112 APPATGTKCLISGWG-NTASSGADYPDELQCLDAPVLSQAKCEASYPG-------KITSN 163
Query: 481 FICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVR 536
C GG +D+C+GD GGP+VC + + G+VSWG GC + PGVY V
Sbjct: 164 MFCVGFLEGG--KDSCQGDSGGPVVCNGQLQ-------GVVSWGDGCAQKNKPGVYTKVY 214
Query: 537 KFKKWI 542
+ KWI
Sbjct: 215 NYVKWI 220
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G N GE PW +L E F CG +++ LTAAHC+ + V G+
Sbjct: 2 VGGYNCKDGEVPWQALLI--NEENEGF-CGGTILSEFYILTAAHCLYQAKRFKVRVGDRN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+V V H ++ ET + +IA+L+L + I F + P LP
Sbjct: 59 TE----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP 114
Query: 154 TYDSENCVITGWGRDSADG 172
++ C+I+GWG ++ G
Sbjct: 115 ATGTK-CLISGWGNTASSG 132
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G++PW + +L K++ CG +++ ++TAAHCV I V GE +
Sbjct: 10 GQFPWQV-VLNGKVDAF---------CGGSIVNEKWIVTAAHCVET--GVKITVVAGEHN 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAK--TVFNDIALIILDFPFPVKNHIGLACTP 418
T+ Q+R V +I H N+ A +DIAL+ LD P + +++ C
Sbjct: 58 IEETEHTE------QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIA 111
Query: 419 NSAEEYDD-----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
+ +EY + + V+GWG+ +GR L+ + V LV R C LR T+
Sbjct: 112 D--KEYTNIFLKFGSGYVSGWGRVFH--KGRSALVLQYLRVPLVDRATC---LRSTK--- 161
Query: 474 VFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP- 529
F ++++ CA GG +D+C+GD GGP V ++ E F GI+SWG C
Sbjct: 162 -FTIYNNMFCAGFHEGG--RDSCQGDAGGPHVTEV--EGTSFL-TGIISWGEECAMKGKY 215
Query: 530 GVYVDVRKFKKWILDNS 546
G+Y V ++ WI + +
Sbjct: 216 GIYTKVSRYVNWIKEKT 232
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G+FPW +VL ++ F CG S++ +TAAHCV+ V +V AGE
Sbjct: 2 VGGEDAKPGQFPWQVVL---NGKVDAF-CGGSIVNEKWIVTAAHCVETGVKITVVAGEHN 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDDYIHPICLPD- 150
I Q+R+V+ + H NY+ + N IALL+L + + Y+ PIC+ D
Sbjct: 58 IE----ETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 151 --WNVTYDSENCVITGWGRDSADGGGPLV 177
N+ + ++GWGR G LV
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALV 142
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 209 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFD 266
V +V AGE I Q+R+V+ + H NY+ + N IALL+L + +
Sbjct: 47 VKITVVAGEHNIE----ETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLN 102
Query: 267 DYIHPICLPD---WNVTYDSENCVITGWGR 293
Y+ PIC+ D N+ + ++GWGR
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGR 132
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDAGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCXK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SXP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGXLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC + + V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCXKSGIQ--VRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
P ++ L I D G +T N+F G
Sbjct: 130 -SXPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 45/257 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G++PW + +L K++ CG +++ ++TAAHCV I V GE +
Sbjct: 10 GQFPWQV-VLNGKVDAF---------CGGSIVNEKWIVTAAHCVET--GVKITVVAGEHN 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAK--TVFNDIALIILDFPFPVKNHIGLACTP 418
T+ Q+R V +I H N+ A +DIAL+ LD P + +++ C
Sbjct: 58 IEETEHTE------QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIA 111
Query: 419 NSAEEYDD-----QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
+ +EY + + V+GWG+ +GR L+ + V LV R C LR T+
Sbjct: 112 D--KEYTNIFLKFGSGYVSGWGRVFH--KGRSALVLQYLRVPLVDRATC---LRSTK--- 161
Query: 474 VFKLHDSFICAS---GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP- 529
F ++++ CA GG +D+C+GD GGP V ++ E F GI+SWG C
Sbjct: 162 -FTIYNNMFCAGFHEGG--RDSCQGDSGGPHVTEV--EGTSFL-TGIISWGEECAMKGKY 215
Query: 530 GVYVDVRKFKKWILDNS 546
G+Y V ++ WI + +
Sbjct: 216 GIYTKVSRYVNWIKEKT 232
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G+FPW +VL ++ F CG S++ +TAAHCV+ V +V AGE
Sbjct: 2 VGGEDAKPGQFPWQVVL---NGKVDAF-CGGSIVNEKWIVTAAHCVETGVKITVVAGEHN 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDDYIHPICLPD- 150
I Q+R+V+ + H NY+ + N IALL+L + + Y+ PIC+ D
Sbjct: 58 IE----ETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 151 --WNVTYDSENCVITGWGRDSADGGGPLV 177
N+ + ++GWGR G LV
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALV 142
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 209 VTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFD 266
V +V AGE I Q+R+V+ + H NY+ + N IALL+L + +
Sbjct: 47 VKITVVAGEHNIE----ETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLN 102
Query: 267 DYIHPICLPD---WNVTYDSENCVITGWGR 293
Y+ PIC+ D N+ + ++GWGR
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGR 132
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 106/255 (41%), Gaps = 44/255 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV----NNIPVTDIKVRG 356
GE+P+M+ ++ EN CG L +V+TAAHCV NN T I G
Sbjct: 10 GEFPFMVRLINE---------ENEGFCGGALYAQDIVLTAAHCVSGSGNN---TSITATG 57
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
G D +++ +++ F +T D ALI L P N L
Sbjct: 58 GVVDLQSSSAVKVRS--------TKVLQAPGFTKETYGKDWALIKLAQPI---NQPTLKI 106
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+A Y+ V GWG ++ G G Q L K V V C+
Sbjct: 107 ATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSSSS------FIL 156
Query: 477 LHDSFICASGGPNQ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ + ICA G P+ D C+GD GGP+ K+ D + QVGIVSWG GC PGVY
Sbjct: 157 VANEMICA-GYPDTGGVDTCQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYPGVY 213
Query: 533 VDVRKFKKWILDNSH 547
+V F I +
Sbjct: 214 TEVSTFASAIASAAR 228
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L E F CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRLI--NEENEGF-CGGALYAQDIVLTAAHCVSGSGNNTSITA--- 55
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P ++ ET + AL+KL+ I+ P
Sbjct: 56 -TGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATT 109
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 110 TAYNQGTFTVAGWGANREGG 129
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDAGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG+Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGIYTKVCNYVSWI 216
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNKRRKNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y+ N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNKRRKNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y+ N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNKRRKNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 130 -SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 164
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSD-------SSCKSASSFIITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG+Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGIYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 27/245 (11%)
Query: 302 EYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDT 361
+PW +++ K GS CG +LI VMTAAHCV++ +V GE +
Sbjct: 11 SWPWQISLQY----KSGS--SYYHTCGGSLIRQGWVMTAAHCVDS--ARTWRVVLGEHNL 62
Query: 362 ITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN--DIALIILDFPFPVKNHIGLACTPN 419
TN + Q TV+ ++IH + + V DIAL+ L+ + + + LA P
Sbjct: 63 NTNEGKE------QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPP 116
Query: 420 SAEEYDDQN-CIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLH 478
S + + N C +TGWGK G G +LK+ + V C G K
Sbjct: 117 SNQILPNNNPCYITGWGKTSTG--GPLSDSLKQAWLPSVDHATCSS---SGWWGSTVK-- 169
Query: 479 DSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGC-GSDTPGVYVDVRK 537
+ +CA GG N C GD GGPL CQ+ VS GC S P V+ V
Sbjct: 170 TTMVCAGGGAN-SGCNGDSGGPLNCQVNGSYYVHGVTSFVS-SSGCNASKKPTVFTRVSA 227
Query: 538 FKKWI 542
+ W+
Sbjct: 228 YISWM 232
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR +PW + L Y + Y CG SLI +TAAHCV T+ V GE
Sbjct: 2 VGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWRVVLGEHN 61
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLEN--NIALLKLSSNIDFDDYIHPICLPDW 151
+N Q V V IH ++++ + +IALL+L++ + + LP
Sbjct: 62 LN----TNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPS 117
Query: 152 NVTYDSEN-CVITGWGRDSADGGGPL 176
N + N C ITGWG+ S GGPL
Sbjct: 118 NQILPNNNPCYITGWGKTST--GGPL 141
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 232 QRRDVLDVRIHPNYSTETLEN--NIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVI 288
Q V V IH ++++ + +IALL+L++ + + LP N + N C I
Sbjct: 70 QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYI 129
Query: 289 TGWGRDS 295
TGWG+ S
Sbjct: 130 TGWGKTS 136
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLLNSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSD-------SSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG+Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGIYTKVCNYVSWI 216
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SL+ ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLLNSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + + + + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSD-------SSCKSASSYIITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ + +F CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSASSRIITSNMF-------CAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVK-NHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SY 132
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
LK ++ ++ + C+ ++ + CA GG +D+C+GD GGP+V
Sbjct: 133 PDVLKCLKAPILSDSSCKSAYPG-------QITSNMFCAGYLEGG--KDSCQGDSGGPVV 183
Query: 503 CQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
C K + GIVSWG GC + PGVY V + WI
Sbjct: 184 CSGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 217
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDF-DDYIHPICLPDWNVTYDSENCVITGWGR 167
+ +HP+Y++ TL N+I L+KL S D + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCASAGTQ-CLISGWGN 124
Query: 168 DSADG 172
+ G
Sbjct: 125 TKSSG 129
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDF-DDYIHPICLPDWNVTYDSENCVITGWGRDSAETF 299
+HP+Y++ TL N+I L+KL S D + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT 130
Query: 300 FGEYPWMMAILTNKINKD--------GSVTENVFQCG 328
YP ++ L I D G +T N+F G
Sbjct: 131 --SYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAG 165
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDAGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGFYTKVCNYVSWI 216
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGFYTKVCNYVSWI 216
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDACQGDAGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGFYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 101/253 (39%), Gaps = 41/253 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV----NNIPVTDIKVRG 356
GE+P+M+ ++ EN CG L +V+TAAHCV NN +T
Sbjct: 10 GEFPFMVRLINE---------ENEGFCGGALYAQDIVLTAAHCVSGSGNNTSIT------ 54
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
T D + + +++ F +T D ALI L P N L
Sbjct: 55 -----ATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI---NQPTLKI 106
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+A Y+ V GWG ++ G G Q L K V V C+
Sbjct: 107 ATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSS------SSFIL 156
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + ICA Q D C+GD GGP+ K+ D + QVGIVSWG GC GVY +
Sbjct: 157 VANEMICAGYDTKQEDTCQGDSGGPMF--RKDNADEWVQVGIVSWGEGCARKGKYGVYTE 214
Query: 535 VRKFKKWILDNSH 547
V F I +
Sbjct: 215 VSTFASAIASAAR 227
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L E F CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRLI--NEENEGF-CGGALYAQDIVLTAAHCVSGSGNNTSITA--- 55
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P ++ ET + AL+KL+ I+ P
Sbjct: 56 -TGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATT 109
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 110 TAYNQGTFTVAGWGANREGG 129
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 102/220 (46%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + C+ +F CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSDSSCKSASSAIITSNMF-------CAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ + T+ NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + + + + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSD-------SSCKSASSWIITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PGVY V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ TL N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPILSD-------SSCKSASSFIITSNMFCAGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y + + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGFYTKLCNYVSWI 216
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + CA GG +D+C+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCAGYLEGG--KDSCQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGSGCAQKNKPGFYTKVCNYVSWI 216
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 36/252 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP-VTDIKVRGGEW 359
GE PW + +L N CG TLI V++AAHC + I ++ GE
Sbjct: 10 GECPWQVLLLVNGAQL----------CGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEH 59
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
D ++ + Q R V+Q+ I + T +DIAL+ L P + +H+ C P
Sbjct: 60 DLSEHDGDE------QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 420 SAEEYDD----QNCIVTGWGK--DKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR-LG 472
+ +V+GWG+ D+ +T ++V VPR + Q L+++R +G
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDR-------GATALVLQVLNVPRLMTQDCLQQSRKVG 166
Query: 473 GVFKLHDSFICAS-GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPG 530
+ + CA ++D+CKGD GGP + R + GIVSWG GC + G
Sbjct: 167 DSPNITEYMFCAGYSDGSKDSCKGDSGGP---HATHYRGTWYLTGIVSWGQGCATVGHFG 223
Query: 531 VYVDVRKFKKWI 542
VY V ++ +W+
Sbjct: 224 VYTRVSQYIEWL 235
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 15/163 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYS---VAAG 90
+ G++ GE PW ++L + CG +LI ++AAHC + G
Sbjct: 2 VGGKDCPKGECPWQVLLLVNGAQL----CGGTLINTIWVVSAAHCFDKIKNWRNLIAVLG 57
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
E ++ Q R V V I Y T ++IALL+L + D++ P+CLP+
Sbjct: 58 EHDLS----EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 151 WNVTYDSENCV----ITGWGRDSADGGGPLVCPSKEDPTTFFQ 189
+ + V ++GWG+ G LV P Q
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQ 156
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV---- 287
Q R V V I Y T ++IALL+L + D++ P+CLP+ + + V
Sbjct: 69 QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSL 128
Query: 288 ITGWGR 293
++GWG+
Sbjct: 129 VSGWGQ 134
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 36/252 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP-VTDIKVRGGEW 359
GE PW + +L N CG TLI V++AAHC + I ++ GE
Sbjct: 10 GECPWQVLLLVNGAQL----------CGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEH 59
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
D ++ + Q R V+Q+ I + T +DIAL+ L P + +H+ C P
Sbjct: 60 DLSEHDGDE------QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 420 SAEEYDD----QNCIVTGWGK--DKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR-LG 472
+ +V+GWG+ D+ +T ++ V VPR + Q L+++R +G
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDR-------GATALELMVLNVPRLMTQDCLQQSRKVG 166
Query: 473 GVFKLHDSFICAS-GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPG 530
+ + CA ++D+CKGD GGP + R + GIVSWG GC + G
Sbjct: 167 DSPNITEYMFCAGYSDGSKDSCKGDSGGP---HATHYRGTWYLTGIVSWGQGCATVGHFG 223
Query: 531 VYVDVRKFKKWI 542
VY V ++ +W+
Sbjct: 224 VYTRVSQYIEWL 235
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYS---VAAG 90
+ G+ GE PW ++L + CG +LI ++AAHC + G
Sbjct: 2 VGGKVCPKGECPWQVLLLVNGAQL----CGGTLINTIWVVSAAHCFDKIKNWRNLIAVLG 57
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
E ++ Q R V V I Y T ++IALL+L + D++ P+CLP+
Sbjct: 58 EHDLS----EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 151 WNVTYDSENCV----ITGWGR 167
+ + V ++GWG+
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQ 134
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV---- 287
Q R V V I Y T ++IALL+L + D++ P+CLP+ + + V
Sbjct: 69 QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSL 128
Query: 288 ITGWGR------DSAETFFGEYPWMMA----ILTNKINKDGSVTENVFQCG 328
++GWG+ + E P +M + K+ ++TE +F G
Sbjct: 129 VSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAG 179
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 33/222 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ V++AAHC ++ ++VR GE N T+ Q + S + H
Sbjct: 25 CGGSLVSKDWVVSAAHCYKSV----LRVRLGEHHIRVNEGTE------QYISSSSVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P D C V+GWG V
Sbjct: 75 NYSSYNINNDIMLIKLTKPATLNQYVHAVALPTECAA-DATMCTVSGWGNTMSSVAD--G 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ + + ++ C + S CA GG +D+C+GD GGP+VC
Sbjct: 132 DKLQCLSLPILSHADCANSYPGM-------ITQSMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWILD 544
+ G+VSWG GC D PGVY V W+ D
Sbjct: 183 NGVLQ-------GVVSWGYGCAERDHPGVYAKVCVLSGWVRD 217
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 15/176 (8%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ + ++AAHC Y V GE I Q V
Sbjct: 19 NSGYHFCGGSLVSKDWVVSAAHC--YKSVLRVRLGEHHIR----VNEGTEQYISSSSVIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR--DSADGG 173
HPNYS+ + N+I L+KL+ + Y+H + LP D+ C ++GWG S G
Sbjct: 73 HPNYSSYNINNDIMLIKLTKPATLNQYVHAVALPT-ECAADATMCTVSGWGNTMSSVADG 131
Query: 174 GPLVC-----PSKEDPTTFFQVGIAAWSVVCTPDMPGLYDVTYSVAAGEWFINGIV 224
L C S D + G+ S+ C + G D + G NG++
Sbjct: 132 DKLQCLSLPILSHADCANSYP-GMITQSMFCAGYLEGGKDSCQGDSGGPVVCNGVL 186
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFFG 301
HPNYS+ + N+I L+KL+ + Y+H + LP D+ C ++GWG + G
Sbjct: 73 HPNYSSYNINNDIMLIKLTKPATLNQYVHAVALPT-ECAADATMCTVSGWGNTMSSVADG 131
Query: 302 E 302
+
Sbjct: 132 D 132
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC T I+VR GE + + Q ++I H
Sbjct: 25 CGGSLISEQWVVSAAHCYK----TRIQVRLGEHNIKVLEGNE------QFINAAKIIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKD-KFGVEGRY 445
+ T+ NDI LI L P + + P +A C+++GWG FG + Y
Sbjct: 75 KYNRDTLDNDIMLIKLSSPAVINARVSTISLP-TAPPAAGTECLISGWGNTLSFGAD--Y 131
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
LK ++ ++ + C+ K+ +S C GG +D+C+ D GGP+V
Sbjct: 132 PDELKCLDAPVLTQAECKASYPG-------KITNSMFCVGFLEGG--KDSCQRDAGGPVV 182
Query: 503 CQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
C + + G+VSWG GC + PGVY V + WI D
Sbjct: 183 CNGQLQ-------GVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SLI ++AAHC Y V GE I + Q + +
Sbjct: 19 NSGYHFCGGSLISEQWVVSAAHC--YKTRIQVRLGEHNIKVL----EGNEQFINAAKIIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HP Y+ +TL+N+I L+KLSS + + I LP +E C+I+GWG
Sbjct: 73 HPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG 122
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFFG 301
HP Y+ +TL+N+I L+KLSS + + I LP +E C+I+GWG + +F
Sbjct: 73 HPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG--NTLSFGA 129
Query: 302 EYPWMMAILTN--------KINKDGSVTENVFQCG 328
+YP + L K + G +T ++F G
Sbjct: 130 DYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 164
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC T I+VR GE + + Q ++I H
Sbjct: 25 CGGSLISEQWVVSAAHCYK----TRIQVRLGEHNIKVLEGNE------QFINAAKIIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKD-KFGVEGRY 445
+ T+ NDI LI L P + + P +A C+++GWG FG + Y
Sbjct: 75 KYNRDTLDNDIMLIKLSSPAVINARVSTISLP-TAPPAAGTECLISGWGNTLSFGAD--Y 131
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
LK ++ ++ + C+ K+ +S C GG +D+C+ D GGP+V
Sbjct: 132 PDELKCLDAPVLTQAECKASYPG-------KITNSMFCVGFLEGG--KDSCQRDAGGPVV 182
Query: 503 CQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
C + + G+VSWG GC + PGVY V + WI D
Sbjct: 183 CNGQLQ-------GVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I + Q + + HP Y+
Sbjct: 25 CGGSLISEQWVVSAAHC--YKTRIQVRLGEHNIKVL----EGNEQFINAAKIIRHPKYNR 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
+TL+N+I L+KLSS + + I LP +E C+I+GWG
Sbjct: 79 DTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG 122
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFFG 301
HP Y+ +TL+N+I L+KLSS + + I LP +E C+I+GWG + +F
Sbjct: 73 HPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG--NTLSFGA 129
Query: 302 EYPWMMAILTN--------KINKDGSVTENVFQCG 328
+YP + L K + G +T ++F G
Sbjct: 130 DYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 164
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 105/230 (45%), Gaps = 41/230 (17%)
Query: 321 TENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
T CG LI P V+TAAHC +++V G+ +N RE Q V
Sbjct: 20 TSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGK-----HNLRQRESSQEQSSVVR 70
Query: 381 QIYIHENFEAKTVFNDIALIILDFPFPVKNHIG-----LACTPNSAEEYDDQNCIVTGWG 435
+ IH +++A + DI L+ L P + I C+ N+ +C + GWG
Sbjct: 71 AV-IHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTT------SCHILGWG 123
Query: 436 KDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGP-NQDACK 494
K +G + T++ + LV R C+ ++ + +CA +D+C+
Sbjct: 124 KT---ADGDFPDTIQCAYIHLVSREECEHAYPG-------QITQNMLCAGDEKYGKDSCQ 173
Query: 495 GDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRKFKKWI 542
GD GGPLVC D G+VSWG I CGS + PGVY +V ++ WI
Sbjct: 174 GDSGGPLVCG-----DHLR--GLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 59 YFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPN 118
+ CG LI P LTAAHC + ++ + + ++ V+ IHP+
Sbjct: 23 HLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHN------LRQRESSQEQSSVVRAVIHPD 76
Query: 119 YSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADGGGP 175
Y + + +I LL+L+ + I P+ L + + + ++ +C I GWG+ +ADG P
Sbjct: 77 YDAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSANTTSCHILGWGK-TADGDFP 131
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
++ V+ IHP+Y + + +I LL+L+ + I P+ L + + + ++ +C I GW
Sbjct: 64 EQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSANTTSCHILGW 122
Query: 292 GR----DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCG 328
G+ D +T Y +++ + G +T+N+ G
Sbjct: 123 GKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAG 163
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + C GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCVGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGFYTKVCNYVSWI 216
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 112/258 (43%), Gaps = 51/258 (19%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW 359
G+ PW +AI KD S CG I ++TAAHC+ ++ W
Sbjct: 330 LGDLPWQVAI------KDASG----ITCGGIYIGGCWILTAAHCLRASKTHRYQI----W 375
Query: 360 DTITN---NRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIIL---------DFPFP 407
T+ + R Y +R I HEN+ A T NDIALI + + P
Sbjct: 376 TTVVDWIHPDLKRIVIEYVDR----IIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRS 431
Query: 408 VKNHIGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
+ AC P S + + CIV+GWG++K + +L+ EVKL+ C +
Sbjct: 432 IP-----ACVPWSPYLFQPNDTCIVSGWGREK---DNERVFSLQWGEVKLISN--CSK-- 479
Query: 467 RKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQV-GIVSWGIGCG 525
G F + + + DACKGD GGPLVC N T V G+VSWG CG
Sbjct: 480 ---FYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANN---VTYVWGVVSWGENCG 533
Query: 526 S-DTPGVYVDVRKFKKWI 542
+ PGVY V + WI
Sbjct: 534 KPEFPGVYTKVANYFDWI 551
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 69/231 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G+ G+ PW + + ++ CG IG LTAAHC++ T+ +
Sbjct: 323 VGGKRAQLGDLPWQVAI----KDASGITCGGIYIGGCWILTAAHCLRASKTH-----RYQ 373
Query: 94 INGIVXXXXXXXQRRDVLD----VRIHPNYSTETLENNIALLKLSSNIDFDD----YIHP 145
I V +R V++ + H NY+ T +N+IAL+++ + + D P
Sbjct: 374 IWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIP 433
Query: 146 ICLPDWN--VTYDSENCVITGWGRD----------------------------------- 168
C+P W+ + ++ C+++GWGR+
Sbjct: 434 ACVP-WSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLISNCSKFYGNRFYEKEMEC 492
Query: 169 -----------SADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
D GGPLVC + T + G+ +W C P+ PG+Y
Sbjct: 493 AGTYDGSIDACKGDSGGPLVCMDANNVTYVW--GVVSWGENCGKPEFPGVY 541
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDD----YIHPICLPDWN--VTYDSENCVITGWGRD 294
H NY+ T +N+IAL+++ + + D P C+P W+ + ++ C+++GWGR+
Sbjct: 399 FHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVP-WSPYLFQPNDTCIVSGWGRE 457
Query: 295 SAETFFGEYPWMMAILTNKINK 316
W L + +K
Sbjct: 458 KDNERVFSLQWGEVKLISNCSK 479
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC + I+VR GE D I N E F +++ +H
Sbjct: 25 CGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI-NVVEGNEQFISASKSI----VHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
++ ++T NDI LI L + + + P S Q C+++GWG K Y
Sbjct: 75 SYNSETYNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT-SYP 132
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
LK ++ ++ + F + + C GG +DAC+GD GGP+VC
Sbjct: 133 DVLKCLKAPIL-------SDSSCKSASSFIITSNMFCVGYLEGG--KDACQGDSGGPVVC 183
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
K + GIVSWG GC + PG Y V + WI
Sbjct: 184 SGKLQ-------GIVSWGEGCAQKNKPGFYTKVCNYVSWI 216
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 49 VLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRR 108
V + N Y CG SLI ++AAHC Y V GE IN + +
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC--YKSGIQVRLGEDNINVVEGNEQFISASK 69
Query: 109 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRD 168
+ +HP+Y++ET N+I L+KL S + I LP + ++ C+I+GWG
Sbjct: 70 SI----VHPSYNSETYNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQ-CLISGWGNT 124
Query: 169 SADG 172
+ G
Sbjct: 125 KSSG 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 241 IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFF 300
+HP+Y++ET N+I L+KL S + I LP + ++ C+I+GWG +
Sbjct: 72 VHPSYNSETYNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQ-CLISGWGNTKSSGT- 129
Query: 301 GEYPWMMAILTNKI 314
YP ++ L I
Sbjct: 130 -SYPDVLKCLKAPI 142
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 34/223 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI V++AAHC T I+VR GE + + Q +I H
Sbjct: 25 CGGSLISEQWVVSAAHCYK----TRIQVRLGEHNIKVLEGNE------QFINAVKIIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKD-KFGVEGRY 445
+ T+ NDI LI L P + + P +A C+++GWG FG + Y
Sbjct: 75 KYNRDTLDNDIMLIKLSSPAVINARVSTISLP-TAPPAAGTECLISGWGNTLSFGAD--Y 131
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
LK ++ ++ + C+ K+ +S C GG +D+C+ D GGP+V
Sbjct: 132 PDELKCLDAPVLTQAECKASYPG-------KITNSMFCVGFLEGG--KDSCQRDSGGPVV 182
Query: 503 CQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILD 544
C + + G+VSWG GC + PGVY V + WI D
Sbjct: 183 CNGQLQ-------GVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I + Q + + + HP Y+
Sbjct: 25 CGGSLISEQWVVSAAHC--YKTRIQVRLGEHNIKVL----EGNEQFINAVKIIRHPKYNR 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
+TL+N+I L+KLSS + + I LP +E C+I+GWG
Sbjct: 79 DTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG 122
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + + HP Y+ +TL+N+I L+KLSS + + I LP +E C+I+GW
Sbjct: 63 QFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGW 121
Query: 292 GRDSAETFFGEYPWMMAILTN--------KINKDGSVTENVFQCG 328
G + +F +YP + L K + G +T ++F G
Sbjct: 122 G--NTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 164
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 54/252 (21%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW A+L + N CGA L+ P ++TAAHC + +VR G +
Sbjct: 13 PWQAALL---------LRPNQLYCGAVLVHPQWLLTAAHCRKKV----FRVRLGHYSLSP 59
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDF---------PFPVKNHIGL 414
+ ++ F + V I H + ND+ LI L+ P V +H
Sbjct: 60 VYESGQQMF----QGVKSI-PHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPS 114
Query: 415 ACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGV 474
A T C+V+GWG K + + L+ + + ++ + C+ +
Sbjct: 115 AGT----------KCLVSGWGTTK-SPQVHFPKVLQCLNISVLSQKRCEDAYPR------ 157
Query: 475 FKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVY 532
++ D+ CA +D+C+GD GGP+VC + G+VSWG C + PGVY
Sbjct: 158 -QIDDTMFCAGDKAGRDSCQGDSGGPVVCNGSLQ-------GLVSWGDYPCARPNRPGVY 209
Query: 533 VDVRKFKKWILD 544
++ KF KWI +
Sbjct: 210 TNLCKFTKWIQE 221
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I+G + PW L + N Y CGA L+ P LTAAHC + + V G +
Sbjct: 2 INGSDCDMHTQPWQAALLL-RPNQLY--CGAVLVHPQWLLTAAHCRKK--VFRVRLGHYS 56
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
++ + Q + HP YS N++ L+KL+ I + PI + +
Sbjct: 57 LSPVYESGQQMFQGVKSIP---HPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSS-HC 112
Query: 154 TYDSENCVITGWG 166
C+++GWG
Sbjct: 113 PSAGTKCLVSGWG 125
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HP YS N++ L+KL+ I + PI + + C+++GWG
Sbjct: 76 HPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSS-HCPSAGTKCLVSGWG 125
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTV--SQIYI 384
CG +LI V++A HC + I+VR GE + E E+ + ++I
Sbjct: 25 CGGSLINEQWVVSAGHCYK----SRIQVRLGEHNI--------EVLEGNEQFINAAKIIR 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H ++ KT+ NDI LI L + H+ P +A C+++GWG +
Sbjct: 73 HPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLP-TAPPATGTKCLISGWG-NTASSGAD 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQ 504
Y L+ ++ ++ + C+ +F + F+ GG +D+C+GD GGP+VC
Sbjct: 131 YPDELQCLDAPVLSQAKCEASYPGKITSNMFCV--GFL--EGG--KDSCQGDAGGPVVCN 184
Query: 505 LKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC + PGVY V + KWI
Sbjct: 185 GQLQ-------GVVSWGDGCAQKNKPGVYTKVYNYVKWI 216
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G N P+ + L N Y CG SLI ++A HC Y V GE
Sbjct: 2 VGGYNCEENSVPYQVSL-----NSGYHFCGGSLINEQWVVSAGHC--YKSRIQVRLGEHN 54
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I + Q + + HP Y +TL N+I L+KLSS + ++ I LP
Sbjct: 55 IEVL----EGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPP 110
Query: 154 TYDSENCVITGWGRDSADG 172
++ C+I+GWG ++ G
Sbjct: 111 ATGTK-CLISGWGNTASSG 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFFG 301
HP Y +TL N+I L+KLSS + ++ I LP ++ C+I+GWG ++
Sbjct: 73 HPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPPATGTK-CLISGWGNTASSG--A 129
Query: 302 EYPWMMAILTNKI--------NKDGSVTENVFQCG 328
+YP + L + + G +T N+F G
Sbjct: 130 DYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVG 164
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC T ++VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----TRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P+S C V+GWG +
Sbjct: 75 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTM-CTVSGWGNTMSSTADK-- 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNNWL 215
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKTRVEVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWG 122
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSST 128
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 23/222 (10%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TL+ V+TAAHC+++ +V G TN EP + VS++ +H+
Sbjct: 30 CGGTLVDQSWVLTAAHCISS--SRTYRVVLGRHSLSTN-----EPGSLAVK-VSKLVVHQ 81
Query: 387 NFEAKTVFN--DIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEG 443
++ + + N DIAL+ L P + + I L C P + ++ C VTGWG+ G
Sbjct: 82 DWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGR--LQTNG 139
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
L++ ++ +V C + G K + ICA G +C GD GGPL C
Sbjct: 140 ASPDILQQGQLLVVDYATCS---KPGWWGSTVKTN--MICAGGDGIISSCNGDSGGPLNC 194
Query: 504 QLKNERDRFTQVGIVSWGIGCGSD---TPGVYVDVRKFKKWI 542
Q N ++ GIVS+G G + P V+ V + WI
Sbjct: 195 QGAN--GQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWI 234
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + +PW + L Y CG +L+ + LTAAHC+ TY V G
Sbjct: 2 VGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRHS 61
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLE--NNIALLKLSSNIDFDDYIHPICLP-D 150
++ V + +H ++++ L N+IALLKL+S + D I CLP
Sbjct: 62 LS----TNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAA 117
Query: 151 WNVTYDSENCVITGWGRDSADGGGP 175
+ ++ C +TGWGR +G P
Sbjct: 118 GTILPNNYVCYVTGWGRLQTNGASP 142
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 236 VLDVRIHPNYSTETLEN--NIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITGWG 292
V + +H ++++ L N +IALLKL+S + D I CLP + ++ C +TGWG
Sbjct: 74 VSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWG 133
Query: 293 R 293
R
Sbjct: 134 R 134
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 98/253 (38%), Gaps = 46/253 (18%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV----NNIPVTDIKVRG 356
GE+P+M+ + CG L +V+TAAHCV NN +T
Sbjct: 10 GEFPFMVRL--------------SMGCGGALYAQDIVLTAAHCVSGSGNNTSIT------ 49
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
T D + + +++ F +T D ALI L P N L
Sbjct: 50 -----ATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI---NQPTLKI 101
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+A Y+ V GWG ++ G G Q L K V V C+
Sbjct: 102 ATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSS------SSFIL 151
Query: 477 LHDSFICASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVD 534
+ + ICA Q D C+GD GGP+ K+ D + QVGIVSWG GC GVY +
Sbjct: 152 VANEMICAGYDTKQEDTCQGDSGGPMF--RKDNADEWVQVGIVSWGEGCARKGKYGVYTE 209
Query: 535 VRKFKKWILDNSH 547
V F I +
Sbjct: 210 VSTFASAIASAAR 222
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNTSITA--- 50
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P ++ ET + AL+KL+ I+ P
Sbjct: 51 -TGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATT 104
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 105 TAYNQGTFTVAGWGANREGG 124
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 104/236 (44%), Gaps = 44/236 (18%)
Query: 323 NVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQI 382
N +QCG L+ + V+TAAHC N+ +V G+ NN + EP Q R VS+
Sbjct: 25 NKYQCGGVLLDRNWVLTAAHCYND----KYQVWLGK-----NNFLEDEPS-DQHRLVSKA 74
Query: 383 YIHENFEAKTV-----------FNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIV 431
H +F + ND+ L+ L P + + + P + E C+
Sbjct: 75 IPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLP-TEEPKLGSTCLA 133
Query: 432 TGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGP 488
+GWG ++ +Y L+ V +KL+P C + K+ D+ +CA GG
Sbjct: 134 SGWGS-TTPIKFKYPDDLQCVNLKLLPNEDCDKAHE-------MKVTDAMLCAGEMDGG- 184
Query: 489 NQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-GCGSDT-PGVYVDVRKFKKWI 542
C+ D GGPL+C D Q GI SWG CG T P VY + KF WI
Sbjct: 185 -SYTCEHDSGGPLIC------DGILQ-GITSWGPEPCGEPTEPSVYTKLIKFSSWI 232
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
PW + ++ + + ++CG L+ N LTAAHC Y+ Y V W
Sbjct: 16 PWHVAVYRFNK----YQCGGVLLDRNWVLTAAHC--YNDKYQV----WLGKNNFLEDEPS 65
Query: 105 XQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFDDYIHPICLPDWNV 153
Q R V HP+++ L N++ LL+LS D D + PI LP
Sbjct: 66 DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP 125
Query: 154 TYDSENCVITGWG 166
S C+ +GWG
Sbjct: 126 KLGS-TCLASGWG 137
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 103/230 (44%), Gaps = 42/230 (18%)
Query: 325 FQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDREPFPYQERTVSQI 382
F G +LI V++AAHC + I+VR GE D + N Q ++I
Sbjct: 25 FCSGGSLINSQWVVSAAHCSYK---SRIQVRLGEHNIDVLEGNE--------QFINAAKI 73
Query: 383 YIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVE 442
H NF T+ NDI LI L P + + + P S + +++GWG K
Sbjct: 74 ITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGNTKSSGS 133
Query: 443 GRYQSTLK-KVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDAC-KGDG 497
Y S L+ ++ ++ + C+ ++ + IC GG +D+C +GD
Sbjct: 134 -SYPSLLQCSLKAPVLSDSSCKSSYPG-------QITGNMICVGFLEGG--KDSCSQGDS 183
Query: 498 GGPLVC---QLKNERDRFTQVGIVSWGIGCGS--DTPGVYVDVRKFKKWI 542
GGP+VC QL+ GIVSWG GC + + PGVY V + WI
Sbjct: 184 GGPVVCSNGQLQ---------GIVSWGYGCSAQKNKPGVYTKVCNYVNWI 224
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 58 EYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHP 117
+F G SLI ++AAHC Y V GE I+ + Q + + HP
Sbjct: 23 SHFCSGGSLINSQWVVSAAHC-SYKSRIQVRLGEHNIDVL----EGNEQFINAAKIITHP 77
Query: 118 NYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
N++ TL+N+I L+KLSS + + + LP +E +I+GWG + G
Sbjct: 78 NFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGNTKSSG 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q + + HPN++ TL+N+I L+KLSS + + + LP +E +I+GW
Sbjct: 66 QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGW 125
Query: 292 GRDSAETFFGEYPWMM 307
G ++ YP ++
Sbjct: 126 GN--TKSSGSSYPSLL 139
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 18/146 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQY---DVTYSVAAG 90
+ G++ G PW ++LF +++ + CGASLI LTAAHC+ Y D ++V
Sbjct: 2 VEGQDAEVGLSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDD- 58
Query: 91 EWFINGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIH 144
+ I +R+ +LD + IHP Y+ E L+ +IALLKL I+ DYIH
Sbjct: 59 --LLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 116
Query: 145 PICLPD----WNVTYDSENCVITGWG 166
P+CLPD + + +TGWG
Sbjct: 117 PVCLPDKQTAAKLLHAGFKGRVTGWG 142
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD----WNVTYDSENCVITGWG 292
+ IHP Y+ E L+ +IALLKL I+ DYIHP+CLPD + + +TGWG
Sbjct: 84 IYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 327 CGATLILPHVVMTAAHCV------NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
CGA+LI V+TAAHC+ N V D+ VR G+ ++RT E + +
Sbjct: 28 CGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGK-----HSRTRYERKVEKISMLD 82
Query: 381 QIYIHENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNC----IVTGWG 435
+IYIH + K + DIAL+ L P + ++I C P+ + VTGWG
Sbjct: 83 KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P+S C V+GWG +
Sbjct: 75 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTM-CTVSGWGNTMSSTADK-- 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 215
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWG 122
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSST 128
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW A+ V EN C L+ P V++AAHC N + + E
Sbjct: 13 PWQAAL----------VMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLE----- 57
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEE 423
D+EP Q S H + + ND+ LI LD + I + + S
Sbjct: 58 ---ADQEPG-SQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTI-RSISIASQCP 112
Query: 424 YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFIC 483
+C+V+GWG GR + L+ V V +V VC + H S C
Sbjct: 113 TAGNSCLVSGWG---LLANGRMPTVLQCVNVSVVSEEVCSKLYDPLY-------HPSMFC 162
Query: 484 ASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKK 540
A GG +Q D+C GD GGPL+C + + Q G+VS+G CG PGVY ++ KF +
Sbjct: 163 AGGGQDQKDSCNGDSGGPLIC------NGYLQ-GLVSFGKAPCGQVGVPGVYTNLCKFTE 215
Query: 541 WI 542
WI
Sbjct: 216 WI 217
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I+G + PW L E F C L+ P L+AAHC Q +Y++ G
Sbjct: 2 INGEDCSPHSQPWQAALVMEN---ELF-CSGVLVHPQWVLSAAHCFQN--SYTIGLG--- 52
Query: 94 INGIVXXXXXXXQRRDV-LDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ + Q + L VR HP Y+ L N++ L+KL ++ D I I +
Sbjct: 53 LHSLEADQEPGSQMVEASLSVR-HPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQC 111
Query: 153 VTYDSENCVITGWG 166
T + +C+++GWG
Sbjct: 112 PTAGN-SCLVSGWG 124
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 237 LDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
L VR HP Y+ L N++ L+KL ++ D I I + T + +C+++GWG
Sbjct: 71 LSVR-HPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGN-SCLVSGWG 124
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 20/220 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TLI + VMTAAHCV+ + V GE + NN T+ Q V +I +H
Sbjct: 30 CGGTLIRQNWVMTAAHCVDRELTFRVVV--GEHNLNQNNGTE------QYVGVQKIVVHP 81
Query: 387 NFEAKTVFN--DIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEG 443
+ V DIAL+ L + +++ L P + + + C +TGWG + G
Sbjct: 82 YWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTR--TNG 139
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
+ TL++ + V +C + G K +S +CA G + C+GD GGPL C
Sbjct: 140 QLAQTLQQAYLPTVDYAICSS---SSYWGSTVK--NSMVCAGGDGVRSGCQGDSGGPLHC 194
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
+ + VS +GC + P V+ V + WI
Sbjct: 195 LVNGQYAVHGVTSFVS-RLGCNVTRKPTVFTRVSAYISWI 233
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G +P + L Y + CG +LI N +TAAHCV ++T+ V GE
Sbjct: 2 VGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHN 61
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLEN--NIALLKLSSNIDFDDYIHPICLP-D 150
+N Q V + +HP ++T+ + +IALL+L+ ++ + Y+ LP
Sbjct: 62 LN----QNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRA 117
Query: 151 WNVTYDSENCVITGWGRDSADG 172
+ ++ C ITGWG +G
Sbjct: 118 GTILANNSPCYITGWGLTRTNG 139
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 20/220 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TLI + VMTAAHCV+ + V GE + NN T+ Q V +I +H
Sbjct: 30 CGGTLIRQNWVMTAAHCVDRELTFRVVV--GEHNLNQNNGTE------QYVGVQKIVVHP 81
Query: 387 NFEAKTVFN--DIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEG 443
+ V DIAL+ L + +++ L P + + + C +TGWG + G
Sbjct: 82 YWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSPCYITGWGLTR--TNG 139
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
+ TL++ + V +C + G K +S +CA G + C+GD GGPL C
Sbjct: 140 QLAQTLQQAYLPTVDYAICSS---SSYWGSTVK--NSMVCAGGDGVRSGCQGDSGGPLHC 194
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
+ + VS +GC + P V+ V + WI
Sbjct: 195 LVNGQYAVHGVTSFVS-RLGCNVTRKPTVFTRVSAYISWI 233
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G +P + L Y + CG +LI N +TAAHCV ++T+ V GE
Sbjct: 2 VGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHN 61
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLEN--NIALLKLSSNIDFDDYIHPICLPD- 150
+N Q V + +HP ++T+ + +IALL+L+ ++ + Y+ LP
Sbjct: 62 LN----QNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRA 117
Query: 151 WNVTYDSENCVITGWGRDSADG 172
+ ++ C ITGWG +G
Sbjct: 118 GTILRNNSPCYITGWGLTRTNG 139
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 45 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 94
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P S C V+GWG
Sbjct: 95 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM-CTVSGWGNTMSSTAD--S 151
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 152 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 202
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 203 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 235
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 39 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 92
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 167
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 93 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGN 143
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 93 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSST 148
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P S C V+GWG
Sbjct: 75 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM-CTVSGWGNTMSSTAD--S 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 215
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWG 122
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSST 128
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P S C V+GWG
Sbjct: 75 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM-CTVSGWGNTMSSTAD--S 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 215
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWG 122
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSST 128
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 40 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 89
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P S C V+GWG
Sbjct: 90 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM-CTVSGWGNTMSSTAD--S 146
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 147 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 197
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 198 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 230
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 34 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 87
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 88 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWG 137
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 88 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSST 143
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 31/221 (14%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH- 385
CG L+ V+TAAHC VR G+ + ++ P QE V+Q H
Sbjct: 26 CGGVLVGDRWVLTAAHCKKQ----KYSVRLGDHSLQSRDQ------PEQEIQVAQSIQHP 75
Query: 386 --ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
N + +DI LI L + + + N + Q CI++GWG E
Sbjct: 76 CYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVG-QKCIISGWGTVTSPQE- 133
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
+ +TL EVK+ +N C++ K+ + +CA D C+GD GGPLVC
Sbjct: 134 NFPNTLNCAEVKIYSQNKCERAYPG-------KITEGMVCAGSSNGADTCQGDSGGPLVC 186
Query: 504 QLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
D Q GI SWG CG + PGVY + ++ WI
Sbjct: 187 ------DGMLQ-GITSWGSDPCGKPEKPGVYTKICRYTTWI 220
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR PW LF +R CG L+G LTAAHC + YSV G+
Sbjct: 2 LEGRECIPHSQPWQAALFQGER----LICGGVLVGDRWVLTAAHCKKQK--YSVRLGDHS 55
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLEN---NIALLKLSSNIDFDDYIHPICLPD 150
+ Q V HP Y+ E+ +I L++L ++ + D + P+ L +
Sbjct: 56 LQ----SRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN 111
Query: 151 WNVTYDSENCVITGWG 166
+ C+I+GWG
Sbjct: 112 L-CPKVGQKCIISGWG 126
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 242 HPNYSTETLEN---NIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HP Y+ E+ +I L++L ++ + D + P+ L + + C+I+GWG
Sbjct: 74 HPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANL-CPKVGQKCIISGWG 126
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P S C V+GWG
Sbjct: 75 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM-CTVSGWGNTMSSTAD--S 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 DKLQCLNIPILSYSDCNDSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFSDWL 215
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWG 122
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSST 128
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + + VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----SRVAVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L P + ++ P+S C V+GWG
Sbjct: 75 NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTM-CTVSGWGNTMSSTADG-- 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 DKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 215
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y +V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKSRVAVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG---RDSADG 172
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG +ADG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTADG 131
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFFG 301
HPNYS+ ++N+I L+KLS + Y+ P+ LP + C ++GWG + T G
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTADG 131
Query: 302 E 302
+
Sbjct: 132 D 132
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 20/220 (9%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TLI + VMTAAHCV+ + V GE + N+ T+ Q V +I +H
Sbjct: 30 CGGTLIRQNWVMTAAHCVDRELTFRVVV--GEHNLNQNDGTE------QYVGVQKIVVHP 81
Query: 387 NFEAKTVFN--DIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEG 443
+ V DIAL+ L + +++ L P + + + C +TGWG + G
Sbjct: 82 YWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTR--TNG 139
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
+ TL++ + V +C + G K +S +CA G + C+GD GGPL C
Sbjct: 140 QLAQTLQQAYLPTVDYAICSS---SSYWGSTVK--NSMVCAGGDGVRSGCQGDSGGPLHC 194
Query: 504 QLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
+ + VS +GC + P V+ V + WI
Sbjct: 195 LVNGQYAVHGVTSFVS-RLGCNVTRKPTVFTRVSAYISWI 233
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G +P + L Y + CG +LI N +TAAHCV ++T+ V GE
Sbjct: 2 VGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHN 61
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLEN--NIALLKLSSNIDFDDYIHPICLP-D 150
+N Q V + +HP ++T+ + +IALL+L+ ++ + Y+ LP
Sbjct: 62 LN----QNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRA 117
Query: 151 WNVTYDSENCVITGWGRDSADG 172
+ ++ C ITGWG +G
Sbjct: 118 GTILANNSPCYITGWGLTRTNG 139
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT--NNRTDREPFPYQERTVSQIYI 384
CG LI P V+TAAHC + G+ T+ + + Q + +
Sbjct: 28 CGGVLIDPQWVLTAAHC-------QYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP 80
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGK---DKFGV 441
+ NDI L+ L + H+ + + C VTGWG D
Sbjct: 81 FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSL-- 138
Query: 442 EGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ-DACKGDGGGP 500
R TL++V V ++ R +C Q + G + +CA Q D+CKGD GGP
Sbjct: 139 --RPSDTLREVTVTVLSRKLCNSQ---SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGP 193
Query: 501 LVCQLKNERDRFTQVGIVSWGIGCGSDT-PGVY-VDVRKFKKWILDN 545
L+C + IVS G CG T PG+Y + +K++ WI N
Sbjct: 194 LIC-------KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 5/145 (3%)
Query: 31 IEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAG 90
+E I G+ P+M + Y ++ CG LI P LTAAHC QY T +
Sbjct: 1 MEIIGGKEVSPHSRPFMASIQYGGHHV----CGGVLIDPQWVLTAAHC-QYRFTKGQSPT 55
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
+ Q ++ +++ N+I L+KL + + ++ + +
Sbjct: 56 VVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRS 115
Query: 151 WNVTYDSENCVITGWGRDSADGGGP 175
C +TGWG D P
Sbjct: 116 KTSLRSGTKCKVTGWGATDPDSLRP 140
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +L+ + V++AAHC + ++VR GE + ++ Q + S++ H
Sbjct: 25 CGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSE------QFISSSRVIRHP 74
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQ 446
N+ + + NDI LI L + ++ P+S C V+GWG +
Sbjct: 75 NYSSYNIDNDIMLIKLSKSATLNTYVQPVALPSSCAPAGTM-CTVSGWGNTMSSTADK-- 131
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLVC 503
+ L+ + + ++ + C + ++ CA GG +D+C+GD GGP+VC
Sbjct: 132 NKLQCLNIPILSYSDCNNSYPGM-------ITNAMFCAGYLEGG--KDSCQGDSGGPVVC 182
Query: 504 QLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC PGVY V F W+
Sbjct: 183 NGELQ-------GVVSWGYGCAEPGNPGVYAKVCIFNDWL 215
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 56 NMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRI 115
N Y CG SL+ N ++AAHC Y V GE I R V
Sbjct: 19 NSGYHFCGGSLVNENWVVSAAHC--YKSRVEVRLGEHNIKVTEGSEQFISSSR----VIR 72
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPNYS+ ++N+I L+KLS + + Y+ P+ LP + C ++GWG
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPS-SCAPAGTMCTVSGWG 122
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAET 298
HPNYS+ ++N+I L+KLS + + Y+ P+ LP + C ++GWG + T
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSST 128
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV----NNIPVTDIKVRG 356
GE+P+M+ + CG L +V+TAAHCV NN T I G
Sbjct: 10 GEFPFMVRL--------------SMGCGGALYAQDIVLTAAHCVSGSGNN---TSITATG 52
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEA---KTVFNDIALIILDFPFPVKNHIG 413
G D Q + ++ + +A D ALI L P N
Sbjct: 53 GVVD-------------LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPI---NQPT 96
Query: 414 LACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
L +A Y+ V GWG ++ G G Q L K V V C+ G
Sbjct: 97 LKIATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSAY------G 146
Query: 474 VFKLHDSFICASGGPNQ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTP 529
+ + ICA G P+ D C+GD GGP+ K+ D + QVGIVSWG GC P
Sbjct: 147 NELVANEEICA-GYPDTGGVDTCQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYP 203
Query: 530 GVYVDVRKFKKWILDNSH 547
GVY +V F I +
Sbjct: 204 GVYTEVSTFASAIASAAR 221
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNTSITA--- 50
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P Y+ + AL+KL+ I+ P
Sbjct: 51 -TGGVVDLQSSSAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATT 102
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 103 TAYNQGTFTVAGWGANREGG 122
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 326 QCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH 385
+CG LI V+TAAHC + I+V G + I ++ P V +I H
Sbjct: 29 KCGGFLIREDFVLTAAHCSG----SKIQVTLGAHN-IKEQEKMQQIIP-----VVKIIPH 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEGR 444
+ +KT+ NDI L+ L + + P + + C V GWGK G G+
Sbjct: 79 PAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK--LGPMGK 136
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGP--NQDACKGDGGGPLV 502
Y TL++VE+ + C+ L+ + + ICA G P + + +GD GGPLV
Sbjct: 137 YSDTLQEVELTVQEDQKCESYLKN------YFDKANEICA-GDPKIKRASFRGDSGGPLV 189
Query: 503 CQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
C + GIVS+G GS TP + V F WI
Sbjct: 190 C-------KKVAAGIVSYGQNDGS-TPRAFTKVSTFLSWI 221
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G P+M L KCG LI + LTAAHC + ++ A
Sbjct: 2 IGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGSKIQVTLGAHN-- 59
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ Q V+ + HP Y+++T+ N+I LLKL S + P+ LP NV
Sbjct: 60 ----IKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNV 115
Query: 154 TYD-SENCVITGWGR 167
+ C + GWG+
Sbjct: 116 KVKPGDVCYVAGWGK 130
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD-SENCVITGWGR 293
V+ + HP Y+++T+ N+I LLKL S + P+ LP NV + C + GWG+
Sbjct: 72 VVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 130
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 101/255 (39%), Gaps = 51/255 (20%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV----NNIPVTDIKVRG 356
GE+P+M+ + CG L +V+TAAHCV NN T I G
Sbjct: 10 GEFPFMVRL--------------SMGCGGALYAQDIVLTAAHCVSGSGNN---TSITATG 52
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
G D +++ V + + D ALI L P N L
Sbjct: 53 GVVDLQSSSAVK----------VRSTKVLQAPGYNGTGKDWALIKLAQPI---NQPTLKI 99
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+A Y+ V GWG ++ G G Q L K V V C+ G
Sbjct: 100 ATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSAY------GNEL 149
Query: 477 LHDSFICASGGPNQ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVY 532
+ + ICA G P+ D C+GD GGP+ K+ D + QVGIVSWG GC PGVY
Sbjct: 150 VANEEICA-GYPDTGGVDPCQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYPGVY 206
Query: 533 VDVRKFKKWILDNSH 547
+V F I +
Sbjct: 207 TEVSTFASAIASAAR 221
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNTSITA--- 50
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P Y+ + AL+KL+ I+ P
Sbjct: 51 -TGGVVDLQSSSAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATT 102
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 103 TAYNQGTFTVAGWGANREGG 122
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 37/228 (16%)
Query: 321 TENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
T CG LI P V+TAAHC +++V G+ + + ++ +V
Sbjct: 21 TSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKHNLRQQESS------QEQSSVV 70
Query: 381 QIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEE---YDDQNCIVTGWGKD 437
+ IH +++A + DI L+ L P + I P E +C + GWGK
Sbjct: 71 RAVIHPDYDAASHDQDIMLLRLARPAKLSELI----QPLPLERDCSAQTTSCHILGWGKT 126
Query: 438 KFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGP-NQDACKGD 496
+G + T++ + LV R C+ ++ + +CA +D+C+GD
Sbjct: 127 ---ADGDFPDTIQCAYIHLVSREECEHAYPG-------QITQNMLCAGDEKYGKDSCQGD 176
Query: 497 GGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRKFKKWI 542
GGPLVC D G+VSWG I CGS + PGVY +V ++ WI
Sbjct: 177 SGGPLVCG-----DHLR--GLVSWGNIPCGSKEKPGVYTNVCRYTNWI 217
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 59 YFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPN 118
+ CG LI P LTAAHC + ++ V G+ + R V IHP+
Sbjct: 24 HLLCGGVLIHPLWVLTAAHCKKPNL--QVFLGKHNLRQQESSQEQSSVVRAV----IHPD 77
Query: 119 YSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADGGGP 175
Y + + +I LL+L+ + I P+ L + + + + +C I GWG+ +ADG P
Sbjct: 78 YDAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSAQTTSCHILGWGK-TADGDFP 132
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR-- 293
V+ IHP+Y + + +I LL+L+ + I P+ L + + + + +C I GWG+
Sbjct: 69 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSAQTTSCHILGWGKTA 127
Query: 294 --DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCG 328
D +T Y +++ + G +T+N+ G
Sbjct: 128 DGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAG 164
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTV--SQIYI 384
CG +LI V++A HC + I+VR GE + E E+ + ++I
Sbjct: 25 CGGSLINEQWVVSAGHCYK----SRIQVRLGEHNI--------EVLEGNEQFINAAKIIR 72
Query: 385 HENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
H ++ KT+ NDI LI L + + P +A C+++GWG +
Sbjct: 73 HPQYDRKTLNNDIMLIKLSSRAVINARVSTISLP-TAPPATGTKCLISGWG-NTASSGAD 130
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQ 504
L+ ++ ++ + C+ +F + F+ GG +D+C+GD GGP+VC
Sbjct: 131 XPDELQCLDAPVLSQAKCEASYPGKITSNMFCV--GFL--EGG--KDSCQGDSGGPVVCN 184
Query: 505 LKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + G+VSWG GC + PGVY V + KWI
Sbjct: 185 GQLQ-------GVVSWGDGCAQKNKPGVYTKVYNYVKWI 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G N P+ + L N Y CG SLI ++A HC Y V GE
Sbjct: 2 VGGYNCEENSVPYQVSL-----NSGYHFCGGSLINEQWVVSAGHC--YKSRIQVRLGEHN 54
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I + Q + + HP Y +TL N+I L+KLSS + + I LP
Sbjct: 55 IEVL----EGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPP 110
Query: 154 TYDSENCVITGWGRDSADG 172
++ C+I+GWG ++ G
Sbjct: 111 ATGTK-CLISGWGNTASSG 128
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAE 297
HP Y +TL N+I L+KLSS + + I LP ++ C+I+GWG ++
Sbjct: 73 HPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTK-CLISGWGNTASS 127
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 37/228 (16%)
Query: 321 TENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVS 380
T CG LI P V+TAAHC +++V G+ + ++ ++ +V
Sbjct: 20 TSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGK------HNLGQQESSQEQSSVV 69
Query: 381 QIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEE---YDDQNCIVTGWGKD 437
+ IH +++A + DI L+ L P + I P E +C + GWGK
Sbjct: 70 RAVIHPDYDAASHDQDIMLLRLARPAKLSELI----QPLPLERDCSAQTTSCHILGWGKT 125
Query: 438 KFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGP-NQDACKGD 496
+G + T++ + LV R C+ ++ + +CA +D+C+GD
Sbjct: 126 ---ADGDFPDTIQCAYIHLVSREECEHAYPG-------QITQNMLCAGDEKYGKDSCQGD 175
Query: 497 GGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRKFKKWI 542
GGPLVC D G+VSWG I CGS + PGVY +V ++ WI
Sbjct: 176 SGGPLVCG-----DHLR--GLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 59 YFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPN 118
+ CG LI P LTAAHC + ++ V G+ + R V IHP+
Sbjct: 23 HLLCGGVLIHPLWVLTAAHCKKPNL--QVFLGKHNLGQQESSQEQSSVVRAV----IHPD 76
Query: 119 YSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADGGGP 175
Y + + +I LL+L+ + I P+ L + + + + +C I GWG+ +ADG P
Sbjct: 77 YDAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSAQTTSCHILGWGK-TADGDFP 131
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR-- 293
V+ IHP+Y + + +I LL+L+ + I P+ L + + + + +C I GWG+
Sbjct: 68 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSAQTTSCHILGWGKTA 126
Query: 294 --DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCG 328
D +T Y +++ + G +T+N+ G
Sbjct: 127 DGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAG 163
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 34/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER-TVSQIYIH 385
CG L+ V++AAHC+ + D KV+ + + +P P + V + H
Sbjct: 26 CGGVLVAEQWVLSAAHCLED--AADGKVQ-----VLLGAHSLSQPEPSKRLYDVLRAVPH 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-----CIVTGWGKDKFG 440
+++ T+ +D+ L+ L K +G A P + D C V GWG
Sbjct: 79 PDYQPDTIDHDLLLLQLSE----KATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHA 134
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
GR +L+ V + ++ R C R+T G + +CA +D+CKGD GGP
Sbjct: 135 --GRRPDSLQHVLLPVLDRATCN---RRTHHDGAIT--ERLMCAESN-RRDSCKGDSGGP 186
Query: 501 LVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
LVC E G+VSWG CG+ PG+Y V + WI
Sbjct: 187 LVCGGVLE-------GVVSWGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR P+M + ++ CG L+ L+AAHC++ V
Sbjct: 2 LGGREAEAHARPYMASVQLNGAHL----CGGVLVAEQWVLSAAHCLEDAADGKVQ----V 53
Query: 94 INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ G +R DVL HP+Y +T+++++ LL+LS + P LP
Sbjct: 54 LLGAHSLSQPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQ 111
Query: 152 NVTYDSEN---CVITGWG 166
V D C + GWG
Sbjct: 112 RVDRDVAPGTLCDVAGWG 129
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN---CVITGW 291
DVL HP+Y +T+++++ LL+LS + P LP V D C + GW
Sbjct: 71 DVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGW 128
Query: 292 G--------RDSAETFFGEYPWM-MAILTNKINKDGSVTENVF 325
G DS + P + A + + DG++TE +
Sbjct: 129 GIVNHAGRRPDSLQHVL--LPVLDRATCNRRTHHDGAITERLM 169
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 47/265 (17%)
Query: 296 AETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD-IKV 354
+ + G +PW+ AI GS+ + V++AAHC ++ P D + V
Sbjct: 5 SSSLPGSHPWLAAIYIGDSFCAGSLVHTCW-----------VVSAAHCFSHSPPRDSVSV 53
Query: 355 RGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-------NDIALIIL----D 403
G+ N TD V+Q + E + T++ +D+ LI L D
Sbjct: 54 VLGQ--HFFNRTTD----------VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 101
Query: 404 FPFPVKNHIGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
+ C P + C + GWG V G Y S+L++ V LV + C
Sbjct: 102 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSG-YSSSLREALVPLVADHKC 160
Query: 463 QQ-QLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
++ + F C S DAC+GD GGPL C+ + GI+SWG
Sbjct: 161 SSPEVYGADISPNMLCAGYFDCKS-----DACQGDSGGPLACEKNGVAYLY---GIISWG 212
Query: 522 IGCGS-DTPGVYVDVRKFKKWILDN 545
GCG PGVY V + WI D
Sbjct: 213 DGCGRLHKPGVYTRVANYVDWINDR 237
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAG 90
I G ++ G PW+ ++ + F C SL+ ++AAHC + + SV G
Sbjct: 2 IGGSSSLPGSHPWLAAIYI----GDSF-CAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLG 56
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL-------ENNIALLKLSSNIDF---- 139
+ F N + DV Y TL ++++ L++L D
Sbjct: 57 QHFFN----------RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 140 DDYIHPICLPDWNVTYDS-ENCVITGWGR 167
++ PICLP+ T+ + C I GWG
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGH 135
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 251 ENNIALLKLSSNIDF----DDYIHPICLPDWNVTYDS-ENCVITGWGR 293
++++ L++L D ++ PICLP+ T+ + C I GWG
Sbjct: 88 DHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGH 135
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 47/265 (17%)
Query: 296 AETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD-IKV 354
+ + G +PW+ AI GS+ + V++AAHC ++ P D + V
Sbjct: 5 SSSLPGSHPWLAAIYIGDSFCAGSLVHTCW-----------VVSAAHCFSHSPPRDSVSV 53
Query: 355 RGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-------NDIALIIL----D 403
G+ N TD V+Q + E + T++ +D+ LI L D
Sbjct: 54 VLGQ--HFFNRTTD----------VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 101
Query: 404 FPFPVKNHIGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
+ C P + C + GWG V G Y S+L++ V LV + C
Sbjct: 102 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSG-YSSSLREALVPLVADHKC 160
Query: 463 QQ-QLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
++ + F C S DAC+GD GGPL C+ + GI+SWG
Sbjct: 161 SSPEVYGADISPNMLCAGYFDCKS-----DACQGDSGGPLACEKNGVAYLY---GIISWG 212
Query: 522 IGCGS-DTPGVYVDVRKFKKWILDN 545
GCG PGVY V + WI D
Sbjct: 213 DGCGRLHKPGVYTRVANYVDWINDR 237
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAG 90
I G ++ G PW+ ++ + F C SL+ ++AAHC + + SV G
Sbjct: 2 IGGSSSLPGSHPWLAAIYI----GDSF-CAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLG 56
Query: 91 EWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL-------ENNIALLKLSSNIDF---- 139
+ F N + DV Y TL ++++ L++L D
Sbjct: 57 QHFFN----------RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 140 DDYIHPICLPDWNVTYDS-ENCVITGWGR 167
++ PICLP+ T+ + C I GWG
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGH 135
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 251 ENNIALLKLSSNIDF----DDYIHPICLPDWNVTYDS-ENCVITGWGR 293
++++ L++L D ++ PICLP+ T+ + C I GWG
Sbjct: 88 DHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGH 135
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 59
Query: 94 INGIVXXXXXXXQRR----DVLD-VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPIC 147
+ I +R +L+ + IHP Y+ E L+ +IAL+KL + F DYIHP+C
Sbjct: 60 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 148 LPDWNVTYDSENC----VITGWG 166
LPD +TGWG
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWG 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENC----VITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD +TGWG
Sbjct: 84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 24/156 (15%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV------NNI 347
+ ++ G PW + + + CGA+LI V+TAAHC+ N
Sbjct: 3 EGSDAEIGMSPWQVMLFRK--------SPQELLCGASLISDRWVLTAAHCLLYPPWDKNF 54
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPF 406
D+ VR G+ ++RT E + + +IYIH + + + DIAL+ L P
Sbjct: 55 TENDLLVRIGK-----HSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 407 PVKNHIGLACTPNSAEEYDDQNC----IVTGWGKDK 438
++I C P+ VTGWG K
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 47/265 (17%)
Query: 296 AETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD-IKV 354
+ + G +PW+ AI GS+ + V++AAHC ++ P D + V
Sbjct: 40 SSSLPGSHPWLAAIYIGDSFCAGSLVHTCW-----------VVSAAHCFSHSPPRDSVSV 88
Query: 355 RGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-------NDIALIIL----D 403
G+ N TD V+Q + E + T++ +D+ LI L D
Sbjct: 89 VLGQ--HFFNRTTD----------VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 136
Query: 404 FPFPVKNHIGLACTPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
+ C P + C + GWG V G Y S+L++ V LV + C
Sbjct: 137 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSG-YSSSLREALVPLVADHKC 195
Query: 463 QQ-QLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
++ + F C S DAC+GD GGPL C+ + GI+SWG
Sbjct: 196 SSPEVYGADISPNMLCAGYFDCKS-----DACQGDSGGPLACEKNGVAYLY---GIISWG 247
Query: 522 IGCGS-DTPGVYVDVRKFKKWILDN 545
GCG PGVY V + WI D
Sbjct: 248 DGCGRLHKPGVYTRVANYVDWINDR 272
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 32/168 (19%)
Query: 16 PWNHTSAENTEEYDYIEP--ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIAL 73
P ++ ++ P I G ++ G PW+ ++ + F C SL+ +
Sbjct: 17 PGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYI----GDSF-CAGSLVHTCWVV 71
Query: 74 TAAHCVQYDV---TYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL------ 124
+AAHC + + SV G+ F N + DV Y TL
Sbjct: 72 SAAHCFSHSPPRDSVSVVLGQHFFN----------RTTDVTQTFGIEKYIPYTLYSVFNP 121
Query: 125 -ENNIALLKLSSNIDF----DDYIHPICLPDWNVTYDS-ENCVITGWG 166
++++ L++L D ++ PICLP+ T+ + C I GWG
Sbjct: 122 SDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 169
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 251 ENNIALLKLSSNIDF----DDYIHPICLPDWNVTYDS-ENCVITGWG 292
++++ L++L D ++ PICLP+ T+ + C I GWG
Sbjct: 123 DHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 169
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 323 NVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDR-----EPFPYQER 377
+ FQCG L+ V+TAAHC+++ + ++ G + + T + E FP+
Sbjct: 22 STFQCGGILVHRQWVLTAAHCISD----NYQLWLGRHNLFDDENTAQFVHVSESFPHPGF 77
Query: 378 TVSQIYIHENFEAKTVFNDIALIILDFPF-PVKNHIGLACTPNSAEEYDDQNCIVTGWGK 436
+S + H + +D+ L+ L P + + + + P E C+ +GWG
Sbjct: 78 NMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEV-GSTCLASGWGS 136
Query: 437 ---DKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQ 490
+ F + L+ V++K++P + C++ V K+ D +C GG +
Sbjct: 137 IEPENF----SFPDDLQCVDLKILPNDECKK-------AHVQKVTDFMLCVGHLEGG--K 183
Query: 491 DACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRKFKKWILD 544
D C GD GGPL+C D Q G+ SWG + CG+ + P V V V + KWI D
Sbjct: 184 DTCVGDSGGPLMC------DGVLQ-GVTSWGYVPCGTPNKPSVAVRVLSYVKWIED 232
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
PW L+++ F+CG L+ LTAAHC+ + W +
Sbjct: 13 PWQAALYHFST----FQCGGILVHRQWVLTAAHCISDNYQL------WLGRHNLFDDENT 62
Query: 105 XQRRDVLDVRIHPNYSTETLEN-----------NIALLKLSSNID-FDDYIHPICLPDWN 152
Q V + HP ++ LEN ++ LL+L+ D D + + LP
Sbjct: 63 AQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEE 122
Query: 153 VTYDSENCVITGWG 166
S C+ +GWG
Sbjct: 123 PEVGS-TCLASGWG 135
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 111/255 (43%), Gaps = 42/255 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--NNIPVTDIKVRGGE 358
G++PW + IL G T L+ + V+TAAH V + + +R G
Sbjct: 10 GDFPWQVLIL-------GGTT-----AAGALLYDNWVLTAAHAVYEQKHDASALDIRMGT 57
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-NDIALIILDFPFPVKNHIGLACT 417
++ + Y + ++IHE + F NDIALI L+ + ++I C
Sbjct: 58 LKRLSPH--------YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 109
Query: 418 PNSAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRL--G 472
P E D +GWG + G R L V++ +V C K G
Sbjct: 110 PRKEAESFMRTDDIGTASGWGLTQRGFLAR---NLMYVDIPIVDHQKCTAAYEKPPYPRG 166
Query: 473 GVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCG-SD 527
V + +CA SGG +D+C+GD GG LV L +E +R+ GIVSWG + CG +
Sbjct: 167 SVTA---NMLCAGLESGG--KDSCRGDAGGALVF-LDSETERWFVGGIVSWGSMNCGEAG 220
Query: 528 TPGVYVDVRKFKKWI 542
GVY V + WI
Sbjct: 221 QYGVYTKVINYIPWI 235
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G+FPW +++ + +L+ N LTAAH V Y+ + +A + +
Sbjct: 4 GQKAKPGDFPWQVLI------LGGTTAAGALLYDNWVLTAAHAV-YEQKHDASALDIRMG 56
Query: 96 GIVXXXXXXXQRRDVLDVRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 149
+ Q V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 57 TLKRLSPHYTQAWSEA-VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 239 VRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 275
V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 73 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 111/255 (43%), Gaps = 42/255 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--NNIPVTDIKVRGGE 358
G++PW + IL G T L+ + V+TAAH V + + +R G
Sbjct: 10 GDFPWQVLIL-------GGTT-----AAGALLYDNWVLTAAHAVYEQKHDASALDIRMGT 57
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-NDIALIILDFPFPVKNHIGLACT 417
++ + Y + ++IHE + F NDIALI L+ + ++I C
Sbjct: 58 LKRLSPH--------YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 109
Query: 418 PNSAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRL--G 472
P E D +GWG + G R L V++ +V C K G
Sbjct: 110 PRKEAESFMRTDDIGTASGWGLTQRGFLAR---NLMYVDIPIVDHQKCTAAYEKPPYPRG 166
Query: 473 GVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCG-SD 527
V + +CA SGG +D+C+GD GG LV L +E +R+ GIVSWG + CG +
Sbjct: 167 SVTA---NMLCAGLESGG--KDSCRGDSGGALVF-LDSETERWFVGGIVSWGSMNCGEAG 220
Query: 528 TPGVYVDVRKFKKWI 542
GVY V + WI
Sbjct: 221 QYGVYTKVINYIPWI 235
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G+FPW +++ + +L+ N LTAAH V Y+ + +A + +
Sbjct: 4 GQKAKPGDFPWQVLI------LGGTTAAGALLYDNWVLTAAHAV-YEQKHDASALDIRMG 56
Query: 96 GIVXXXXXXXQRRDVLDVRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 149
+ Q V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 57 TLKRLSPHYTQAWSEA-VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 239 VRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 275
V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 73 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 101/258 (39%), Gaps = 57/258 (22%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV----NNIPVTDIKVRG 356
GE+P+M+ + CG L +V+TAAHCV NN T I G
Sbjct: 10 GEFPFMVRL--------------SMGCGGALYAQDIVLTAAHCVSGSGNN---TSITATG 52
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEA---KTVFNDIALIILDFPFPVKNHIG 413
G D Q ++ + +A D ALI L P N
Sbjct: 53 GVVD-------------LQSGAAVKVRSTKVLQAPGYNGTGKDWALIKLAQPI---NQPT 96
Query: 414 LACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGG 473
L +A Y+ V GWG ++ G G Q L K V V C+ G
Sbjct: 97 LKIATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSAY------G 146
Query: 474 VFKLHDSFICASGGPNQ---DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTP 529
+ + ICA G P+ D C+GD GGP+ K+ D + QVGIVSWG GC P
Sbjct: 147 NELVANEEICA-GYPDTGGVDTCQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYP 203
Query: 530 GVYVDVRKFKKWILDNSH 547
GVY +V F I +
Sbjct: 204 GVYTEVSTFASAIASAAR 221
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNTSITA--- 50
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P Y+ + AL+KL+ I+ P
Sbjct: 51 -TGGVVDLQSGAAVKVRSTKVLQAPGYNGT--GKDWALIKLAQPIN-----QPTLKIATT 102
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 103 TAYNQGTFTVAGWGANREGG 122
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 121/285 (42%), Gaps = 46/285 (16%)
Query: 271 PICLPDWNVTYDSENCVITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGAT 330
P+C P ++ + I G + G++PW + IL G T
Sbjct: 145 PVCEPVCGLSARTTGGQIYGGQKAKP----GDFPWQVLIL-------GGTTA-----AGA 188
Query: 331 LILPHVVMTAAHCV--NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF 388
L+ + V+TAAH V + + +R G ++ + Y + ++IHE +
Sbjct: 189 LLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPH--------YTQAWSEAVFIHEGY 240
Query: 389 EAKTVF-NDIALIILDFPFPVKNHIGLACTPNSAEE---YDDQNCIVTGWGKDKFGVEGR 444
F NDIALI L+ + ++I C P E D +GWG + G R
Sbjct: 241 THDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLAR 300
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRL--GGVFKLHDSFICA---SGGPNQDACKGDGGG 499
L V++ +V C K G V + +CA SGG +D+C+GD GG
Sbjct: 301 ---NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTA---NMLCAGLESGG--KDSCRGDSGG 352
Query: 500 PLVCQLKNERDRFTQVGIVSWG-IGCG-SDTPGVYVDVRKFKKWI 542
LV L +E +R+ GIVSWG + CG + GVY V + WI
Sbjct: 353 ALVF-LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G+FPW +++ + +L+ N LTAAH V Y+ + +A + +
Sbjct: 165 GQKAKPGDFPWQVLI------LGGTTAAGALLYDNWVLTAAHAV-YEQKHDASALDIRMG 217
Query: 96 GIVXXXXXXXQRRDVLDVRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 149
+ Q V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 218 TLKRLSPHYTQAWSEA-VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 271
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 239 VRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 275
V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 234 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 271
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 121/285 (42%), Gaps = 46/285 (16%)
Query: 271 PICLPDWNVTYDSENCVITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGAT 330
P+C P ++ + I G + G++PW + IL G T
Sbjct: 70 PVCEPVCGLSARTTGGRIYGGQKAKP----GDFPWQVLIL-------GGTT-----AAGA 113
Query: 331 LILPHVVMTAAHCV--NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF 388
L+ + V+TAAH V + + +R G ++ + Y + ++IHE +
Sbjct: 114 LLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPH--------YTQAWSEAVFIHEGY 165
Query: 389 EAKTVF-NDIALIILDFPFPVKNHIGLACTPNSAEE---YDDQNCIVTGWGKDKFGVEGR 444
F NDIALI L+ + ++I C P E D +GWG + G R
Sbjct: 166 THDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLAR 225
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRL--GGVFKLHDSFICA---SGGPNQDACKGDGGG 499
L V++ +V C K G V + +CA SGG +D+C+GD GG
Sbjct: 226 ---NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTA---NMLCAGLESGG--KDSCRGDSGG 277
Query: 500 PLVCQLKNERDRFTQVGIVSWG-IGCG-SDTPGVYVDVRKFKKWI 542
LV L +E +R+ GIVSWG + CG + GVY V + WI
Sbjct: 278 ALVF-LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 321
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G+FPW +++ + +L+ N LTAAH V Y+ + +A + +
Sbjct: 90 GQKAKPGDFPWQVLI------LGGTTAAGALLYDNWVLTAAHAV-YEQKHDASALDIRMG 142
Query: 96 GIVXXXXXXXQRRDVLDVRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 149
+ Q V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 143 TLKRLSPHYTQAWSEA-VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 196
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 239 VRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLP 275
V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 159 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 196
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 94/224 (41%), Gaps = 44/224 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG TLI P V+TAAHC+ +IP + V G + T T Q +V+Q+++
Sbjct: 29 CGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQ------QHFSVAQVFL-N 81
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
N++A+ NDI LI L P + + P + C+ GWG + G
Sbjct: 82 NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWG--RVGAHDPP 139
Query: 446 QSTLKKVEVKLV-----PRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
L+++ V +V P N+C R R G+ C GD GGP
Sbjct: 140 AQVLQELNVTVVTFFCRPHNICTFVPR--RKAGI------------------CFGDSGGP 179
Query: 501 LVCQLKNERDRFTQVGIVSWGI-GCGSDT-PGVYVDVRKFKKWI 542
L+C D Q GI S+ I GC + P + V + WI
Sbjct: 180 LIC------DGIIQ-GIDSFVIWGCATRLFPDFFTRVALYVDWI 216
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV----QYDVTYSVAAGEWFINGIVXX 100
P+M L +F CG +LI P+ LTAAHC+ Q V + A V
Sbjct: 13 PYMASLQMRGNPGSHF-CGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHN------VRT 65
Query: 101 XXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP--DWNVTYDSE 158
Q V V ++ NY E N+I L++LSS + + + LP D V + ++
Sbjct: 66 QEPTQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQ 124
Query: 159 NCVITGWGRDSA 170
C+ GWGR A
Sbjct: 125 -CLAMGWGRVGA 135
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 244 NYSTETLENNIALLKLSSNIDFDDYIHPICLP--DWNVTYDSENCVITGWGRDSAE 297
NY E N+I L++LSS + + + LP D V + ++ C+ GWGR A
Sbjct: 82 NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQ-CLAMGWGRVGAH 136
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 100/255 (39%), Gaps = 52/255 (20%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPV-TDIKVRGGEW 359
GE+P+M+ + CG L +V+TAAHCV+ T I GG
Sbjct: 10 GEFPFMVRL--------------SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV 55
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEA---KTVFNDIALIILDFPFPVKNHIGLAC 416
D Q + ++ + +A D ALI L P N L
Sbjct: 56 D-------------LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPI---NQPTLKI 99
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK 476
+A Y+ V GWG ++ G G Q L K V V C+ G
Sbjct: 100 ATTTA--YNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRSAY------GNEL 149
Query: 477 LHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTP-GVY 532
+ + ICA +GG D C+GD GGP+ K+ D + QVGIVSWG GC GVY
Sbjct: 150 VANEEICAGYDTGGV--DTCQGDSGGPMF--RKDNADEWIQVGIVSWGEGCARKGKYGVY 205
Query: 533 VDVRKFKKWILDNSH 547
+V F I +
Sbjct: 206 TEVSTFASAIASAAR 220
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-TYSVAAGEW 92
+ G GEFP+M+ L CG +L +I LTAAHCV S+ A
Sbjct: 2 VGGTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNTSITA--- 50
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
G+V + V P Y+ + AL+KL+ I+ P
Sbjct: 51 -TGGVVDLQSSSAVKVRSTKVLQAPGYN--GTGKDWALIKLAQPIN-----QPTLKIATT 102
Query: 153 VTYDSENCVITGWGRDSADG 172
Y+ + GWG + G
Sbjct: 103 TAYNQGTFTVAGWGANREGG 122
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 45/226 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTD-----REPFPYQERTVSQ 381
CG L+ V+TAAHC+ + I V G + + RT R P P
Sbjct: 29 CGGFLVREDFVLTAAHCLG----SSINVTLGAHNIMERERTQQVIPVRRPIP-------- 76
Query: 382 IYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS-AEEYDDQNCIVTGWGKDKFG 440
H ++ +T+ NDI L+ L + + + P S AE C V GWG + G
Sbjct: 77 ---HPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWG--RLG 131
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSF--ICASGGPN--QDACKGD 496
V L++V++++ C + FK + F ICA G P+ +++ GD
Sbjct: 132 VNMPSTDKLQEVDLEVQSEEKCIAR---------FKNYIPFTQICA-GDPSKRKNSFSGD 181
Query: 497 GGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
GGPLVC + GIVS+G G+ TP VY + F WI
Sbjct: 182 SGGPLVCNGVAQ-------GIVSYGRNDGT-TPDVYTRISSFLSWI 219
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G P+M L + + CG L+ + LTAAHC+ + ++ A
Sbjct: 2 IGGHEAKPHSRPYMAFLLFKTSGKSHI-CGGFLVREDFVLTAAHCLGSSINVTLGAHNIM 60
Query: 94 INGIVXXXXXXXQRRDVLDVRI---HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP- 149
+ + V+ VR HP+Y+ ETL N+I LLKL+ D D + PI LP
Sbjct: 61 ---------ERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPR 111
Query: 150 DWNVTYDSENCVITGWGR 167
C + GWGR
Sbjct: 112 SLAEVKPGMMCSVAGWGR 129
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITGWGR 293
HP+Y+ ETL N+I LLKL+ D D + PI LP C + GWGR
Sbjct: 77 HPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGR 129
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW +A++ N + CG LI P V+TAAHC +N + +V G
Sbjct: 13 PWQVAVI------------NEYLCGGVLIDPSWVITAAHCYSN----NYQVLLGR----- 51
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTVF-----------NDIALIILDFPFPVKNHI 412
NN EPF Q R V Q + H ++ V ND+ L+ L P + +
Sbjct: 52 NNLFKDEPF-AQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGV 110
Query: 413 GLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLG 472
+ P + E C+ +GWG E L+ V + L+ C + +
Sbjct: 111 KVIDLP-TKEPKVGSTCLASGWGSTNPS-EMVVSHDLQCVNIHLLSNEKCIETYKDN--- 165
Query: 473 GVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-D 527
+ D +CA GG +D C GD GGPL+C D Q GI S G C
Sbjct: 166 ----VTDVMLCAGEMEGG--KDTCAGDSGGPLIC------DGVLQ-GITSGGATPCAKPK 212
Query: 528 TPGVYVDVRKFKKWI 542
TP +Y + KF WI
Sbjct: 213 TPAIYAKLIKFTSWI 227
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 24/133 (18%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
PW + + EY CG LI P+ +TAAHC Y Y V G +
Sbjct: 13 PWQVAVIN-----EYL-CGGVLIDPSWVITAAHC--YSNNYQVLLGR----NNLFKDEPF 60
Query: 105 XQRRDVLDVRIHPNY-----------STETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
QRR V HP+Y N++ LL LS D + I LP
Sbjct: 61 AQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP 120
Query: 154 TYDSENCVITGWG 166
S C+ +GWG
Sbjct: 121 KVGS-TCLASGWG 132
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW 359
G +PW + TN I+ G G L+ ++TAAH + P
Sbjct: 9 MGNFPWQ--VFTN-IHGRG---------GGALLGDRWILTAAHTL--YPKEHEAQSNASL 54
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN---DIALIILDFPFPVKNHIGLAC 416
D + E + ++ +H ++ +N DIAL+ L+ + ++ C
Sbjct: 55 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 114
Query: 417 TPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
P++ YD V+G+G +E + L+ V + + C+ LR VF
Sbjct: 115 LPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVF 170
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDV 535
+ F QDAC+GD GG + N DR+ GIVSWGIGC S G Y V
Sbjct: 171 S-QNMFCAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGC-SRGYGFYTKV 227
Query: 536 RKFKKWI 542
+ WI
Sbjct: 228 LNYVDWI 234
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV--QYDVTYSVAAGE 91
I G+ G FPW + + R G +L+G LTAAH + + S A+ +
Sbjct: 2 IGGQKAKMGNFPWQVFTNIHGRG------GGALLGDRWILTAAHTLYPKEHEAQSNASLD 55
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICL 148
F+ + V +HP+Y + E +IALL+L +++ + PICL
Sbjct: 56 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 115
Query: 149 PDWNVTYD 156
PD + YD
Sbjct: 116 PDNDTFYD 123
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 239 VRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD 282
V +HP+Y + E +IALL+L +++ + PICLPD + YD
Sbjct: 77 VSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYD 123
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW 359
G +PW + TN I+ G G L+ ++TAAH + P
Sbjct: 98 MGNFPWQ--VFTN-IHGRG---------GGALLGDRWILTAAHTL--YPKEHEAQSNASL 143
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN---DIALIILDFPFPVKNHIGLAC 416
D + E + ++ +H ++ +N DIAL+ L+ + ++ C
Sbjct: 144 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 203
Query: 417 TPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
P++ YD V+G+G +E + L+ V + + C+ LR VF
Sbjct: 204 LPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVF 259
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDV 535
+ F QDAC+GD GG + N DR+ GIVSWGIGC S G Y V
Sbjct: 260 S-QNMFCAGHPSLKQDACQGDAGGVFAVRDPNT-DRWVATGIVSWGIGC-SRGYGFYTKV 316
Query: 536 RKFKKWI 542
+ WI
Sbjct: 317 LNYVDWI 323
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV--QYDVTYSVAAGE 91
I G+ G FPW + + R G +L+G LTAAH + + S A+ +
Sbjct: 91 IGGQKAKMGNFPWQVFTNIHGRG------GGALLGDRWILTAAHTLYPKEHEAQSNASLD 144
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICL 148
F+ + V +HP+Y + E +IALL+L +++ + PICL
Sbjct: 145 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 204
Query: 149 PDWNVTYD 156
PD + YD
Sbjct: 205 PDNDTFYD 212
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 236 VLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD 282
+ V +HP+Y + E +IALL+L +++ + PICLPD + YD
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYD 212
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW 359
G +PW + TN I+ G G L+ ++TAAH + P
Sbjct: 98 MGNFPWQ--VFTN-IHGRG---------GGALLGDRWILTAAHTL--YPKEHEAQSNASL 143
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN---DIALIILDFPFPVKNHIGLAC 416
D + E + ++ +H ++ +N DIAL+ L+ + ++ C
Sbjct: 144 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 203
Query: 417 TPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
P++ YD V+G+G +E + L+ V + + C+ LR VF
Sbjct: 204 LPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVF 259
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDV 535
+ F QDAC+GD GG + N DR+ GIVSWGIGC S G Y V
Sbjct: 260 S-QNMFCAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGC-SRGYGFYTKV 316
Query: 536 RKFKKWI 542
+ WI
Sbjct: 317 LNYVDWI 323
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV--QYDVTYSVAAGE 91
I G+ G FPW + + R G +L+G LTAAH + + S A+ +
Sbjct: 91 IGGQKAKMGNFPWQVFTNIHGRG------GGALLGDRWILTAAHTLYPKEHEAQSNASLD 144
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICL 148
F+ + V +HP+Y + E +IALL+L +++ + PICL
Sbjct: 145 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 204
Query: 149 PDWNVTYD 156
PD + YD
Sbjct: 205 PDNDTFYD 212
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 236 VLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD 282
+ V +HP+Y + E +IALL+L +++ + PICLPD + YD
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYD 212
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHC-VNNIPVTDIKVRGGEWDTI 362
PW +A+ K E++ CG L+ + V+TAAHC V+ V K + + +
Sbjct: 13 PWQVAVYYQK--------EHI--CGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQEEPS 62
Query: 363 TNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAE 422
+R + FP+ +S + + +D+ L+ L P + + + P + E
Sbjct: 63 AQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALP-TKE 121
Query: 423 EYDDQNCIVTGWGKDKFGVEGRYQST--LKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
C+ +GWG R+Q L+ V + L+P C + + K+ D
Sbjct: 122 PKPGSKCLASGWGSI---TPTRWQKPDDLQCVFITLLPNENCAKVYLQ-------KVTDV 171
Query: 481 FICASG-GPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRK 537
+CA G +D C+ D GGPL+C D Q G S+G + CG P +Y ++ K
Sbjct: 172 MLCAGEMGGGKDTCRDDSGGPLIC------DGILQ-GTTSYGPVPCGKPGVPAIYTNLIK 224
Query: 538 FKKWILD 544
F WI D
Sbjct: 225 FNSWIKD 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 26/146 (17%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV--QYDVTYSVAAGE 91
+ G N PW + ++Y K ++ CG L+ N LTAAHC QY+V
Sbjct: 2 VGGFNCEKNSQPWQVAVYYQKEHI----CGGVLLDRNWVLTAAHCYVDQYEV-------- 49
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFD 140
W + Q R V HP ++ L +++ LL+LS D
Sbjct: 50 WLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADIT 109
Query: 141 DYIHPICLPDWNVTYDSENCVITGWG 166
D + PI LP S+ C+ +GWG
Sbjct: 110 DVVKPIALPTKEPKPGSK-CLASGWG 134
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 300 FGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW 359
G +PW + TN I+ G G L+ ++TAAH + P
Sbjct: 166 MGNFPWQ--VFTN-IHGRG---------GGALLGDRWILTAAHTL--YPKEHEAQSNASL 211
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN---DIALIILDFPFPVKNHIGLAC 416
D + E + ++ +H ++ +N DIAL+ L+ + ++ C
Sbjct: 212 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 271
Query: 417 TPNSAEEYD-DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
P++ YD V+G+G +E + L+ V + + C+ LR VF
Sbjct: 272 LPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVF 327
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDV 535
+ F QDAC+GD GG + N DR+ GIVSWGIGC S G Y V
Sbjct: 328 S-QNMFCAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGC-SRGYGFYTKV 384
Query: 536 RKFKKWI 542
+ WI
Sbjct: 385 LNYVDWI 391
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV--QYDVTYSVAAGE 91
I G+ G FPW + + R G +L+G LTAAH + + S A+ +
Sbjct: 159 IGGQKAKMGNFPWQVFTNIHGRG------GGALLGDRWILTAAHTLYPKEHEAQSNASLD 212
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICL 148
F+ + V +HP+Y + E +IALL+L +++ + PICL
Sbjct: 213 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 272
Query: 149 PDWNVTYD 156
PD + YD
Sbjct: 273 PDNDTFYD 280
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 236 VLDVRIHPNYSTE---TLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD 282
+ V +HP+Y + E +IALL+L +++ + PICLPD + YD
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYD 280
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 94/232 (40%), Gaps = 38/232 (16%)
Query: 325 FQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYI 384
+ CG TLI V+TAAHC + T+ +++ G N + Q R + +I
Sbjct: 23 YFCGLTLINQEWVVTAAHCDS----TNFQMQLGVHSKKVLNEDE------QTRNPKEKFI 72
Query: 385 HENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
N V + DI LI LD P HI P++ C + GWG E
Sbjct: 73 CPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSV-CRIMGWGSITIPNE- 130
Query: 444 RYQSTLKKVEVKLVPRNVCQQQ-----LRKTRLGGVFKLHDSFICASGGPNQDACKGDGG 498
Y + LV VCQ + T GV + GG +D C GD G
Sbjct: 131 TYPDVPYCANINLVDYEVCQGAYNGLPAKTTLCAGVLE---------GG--KDTCVGDSG 179
Query: 499 GPLVCQLKNERDRFTQVGIVSWGI-GCGSD-TPGVYVDVRKFKKWILDNSHG 548
GPL+C + + GIVS+G CG PG+Y +V + WI N G
Sbjct: 180 GPLICNGQFQ-------GIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAG 224
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G E P++ L+ + YF CG +LI +TAAHC + +
Sbjct: 2 LGGDECDINEHPFLAFLYSHG----YF-CGLTLINQEWVVTAAHCDSTNFQMQLGVHSKK 56
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ Q R+ + I PN + +E L+ +I L+KL I +I P+ LP N
Sbjct: 57 V------LNEDEQTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLPS-N 109
Query: 153 VTYDSENCVITGWGR 167
C I GWG
Sbjct: 110 PPSVGSVCRIMGWGS 124
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 232 QRRDVLDVRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITG 290
Q R+ + I PN + +E L+ +I L+KL I +I P+ LP N C I G
Sbjct: 63 QTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLPS-NPPSVGSVCRIMG 121
Query: 291 WGR 293
WG
Sbjct: 122 WGS 124
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 34/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER-TVSQIYIH 385
CG L+ V++AAHC+ + D KV+ + + +P P + V + H
Sbjct: 26 CGGVLVAEQWVLSAAHCLED--AADGKVQ-----VLLGAHSLSQPEPSKRLYDVLRAVPH 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-----CIVTGWGKDKFG 440
+ + T+ +D+ L+ L K +G A P + D C V GWG
Sbjct: 79 PDSQPDTIDHDLLLLQLSE----KATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHA 134
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
GR +L+ V + ++ R C R+T G + +CA +D+CKGD GGP
Sbjct: 135 --GRRPDSLQHVLLPVLDRATCN---RRTHHDGAIT--ERLMCAESN-RRDSCKGDSGGP 186
Query: 501 LVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
LVC E G+V+ G CG+ PG+Y V + WI
Sbjct: 187 LVCGGVLE-------GVVTSGSAVCGNRKKPGIYTRVASYAAWI 223
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR P+M + ++ CG L+ L+AAHC++ V
Sbjct: 2 LGGREAEAHARPYMASVQLNGAHL----CGGVLVAEQWVLSAAHCLEDAADGKVQ----V 53
Query: 94 INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ G +R DVL HP+ +T+++++ LL+LS + P LP
Sbjct: 54 LLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQ 111
Query: 152 NVTYDSEN---CVITGWG 166
V D C + GWG
Sbjct: 112 RVDRDVAPGTLCDVAGWG 129
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN---CVITGW 291
DVL HP+ +T+++++ LL+LS + P LP V D C + GW
Sbjct: 71 DVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGW 128
Query: 292 G--------RDSAETFFGEYPWM-MAILTNKINKDGSVTENVF 325
G DS + P + A + + DG++TE +
Sbjct: 129 GIVNHAGRRPDSLQHVL--LPVLDRATCNRRTHHDGAITERLM 169
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
++G + + W + L Y K + CG SLI P+ +TA HC+ TY V GE+
Sbjct: 13 VNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEY- 71
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLE--NNIALLKLSSNIDFDDYIHPICLPD- 150
+ V + D+ +HP +++ + N+IAL+KLS + D + LP
Sbjct: 72 -DRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPA 130
Query: 151 WNVTYDSENCVITGWGRDSADGGGPL 176
++ + C I+GWGR GGPL
Sbjct: 131 GDILPNEAPCYISGWGRLYT--GGPL 154
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 293 RDSAETFFGE----YPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP 348
R S+ GE Y W + + + KDG+ CG +LI P V+TA HC++
Sbjct: 7 RPSSRVVNGEDAVPYSWSWQV-SLQYEKDGAFHHT---CGGSLIAPDWVVTAGHCISTSR 62
Query: 349 VTDIKVRGGEWD-TITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDFP 405
+ + GE+D ++ P +++H + + V NDIAL+ L
Sbjct: 63 TYQVVL--GEYDRSVLQGSEQVIPI-----NAGDLFVHPLWNSNCVACGNDIALVKLSRS 115
Query: 406 FPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ + + LA P + + ++ C ++GWG+ G G L++ + +V C Q
Sbjct: 116 AQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTG--GPLPDKLQEALLPVVDYEHCSQ 173
Query: 465 QLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGC 524
G+ + + +CA GG + C GD GGPL C + + V GC
Sbjct: 174 Y----DWWGI-TVKKTMVCA-GGDTRSGCDGDSGGPLNCPAADGSWQVHGVTSFVSAFGC 227
Query: 525 GS-DTPGVYVDVRKFKKWI 542
+ P V+ V F WI
Sbjct: 228 NTIKKPTVFTRVSAFIDWI 246
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 238 DVRIHPNYSTETLE--NNIALLKLSSNIDFDDYIHPICLPD-WNVTYDSENCVITGWGR 293
D+ +HP +++ + N+IAL+KLS + D + LP ++ + C I+GWGR
Sbjct: 89 DLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGR 147
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 34/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER-TVSQIYIH 385
CG L+ V++AAHC+ + D KV+ + + +P P + V + H
Sbjct: 26 CGGVLVAEQWVLSAAHCLED--AADGKVQ-----VLLGAHSLSQPEPSKRLYDVLRAVPH 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-----CIVTGWGKDKFG 440
+ + T+ +D+ L+ L K +G A P + D C V GWG
Sbjct: 79 PDSQPDTIDHDLLLLQLSE----KATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHA 134
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
GR +L+ V + ++ R C R+T G + +CA +D+CKGD GGP
Sbjct: 135 --GRRPDSLQHVLLPVLDRATCN---RRTHHDGAIT--ERLMCAESN-RRDSCKGDAGGP 186
Query: 501 LVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
LVC E G+V+ G CG+ PG+Y V + WI
Sbjct: 187 LVCGGVLE-------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ GR P+M + ++ CG L+ L+AAHC++ D V G
Sbjct: 2 LGGREAEAHARPYMASVQLNGAHL----CGGVLVAEQWVLSAAHCLEDAADGKVQVLLGA 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
++ + DVL HP+ +T+++++ LL+LS + P LP
Sbjct: 58 HSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQ 111
Query: 152 NVTYDSEN---CVITGWG 166
V D C + GWG
Sbjct: 112 RVDRDVAPGTLCDVAGWG 129
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN---CVITGW 291
DVL HP+ +T+++++ LL+LS + P LP V D C + GW
Sbjct: 71 DVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGW 128
Query: 292 G--------RDSAETFFGEYPWM-MAILTNKINKDGSVTENVF 325
G DS + P + A + + DG++TE +
Sbjct: 129 GIVNHAGRRPDSLQHVL--LPVLDRATCNRRTHHDGAITERLM 169
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 322 ENVFQCGATLILPHVVMTAAHCVNNIPVTDI-----KVRGGEWDTITNNRTDREPFPYQE 376
++++ CG +LI P ++TAAHC++ D+ +R E +T TD
Sbjct: 21 DDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIREDEATQVTIQSTD-------- 72
Query: 377 RTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGK 436
+HEN+ + + NDIA+I L P + I P S + TGWG
Sbjct: 73 -----FTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP-STDVGVGTVVTPTGWGL 126
Query: 437 DKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGD 496
G L++V+V ++ C + D IC + C GD
Sbjct: 127 PSDSALG-ISDVLRQVDVPIMSNADCDAVYG--------IVTDGNICIDSTGGKGTCNGD 177
Query: 497 GGGPLVCQLKNERDRFTQVGIVSWG--IGCGSDTPGVYVDVRKFKKWI 542
GGPL + T GI S+G GC + P + V F WI
Sbjct: 178 SGGPL------NYNGLTY-GITSFGAAAGCEAGYPDAFTRVTYFLDWI 218
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 58 EYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVL-----D 112
+ + CG SLI P LTAAHC+ G F++ ++ + D
Sbjct: 22 DMYFCGGSLISPEWILTAAHCMD---------GAGFVDVVLGAHNIREDEATQVTIQSTD 72
Query: 113 VRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG--RDSA 170
+H NY++ + N+IA+++L + I + LP +V + TGWG DSA
Sbjct: 73 FTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTV-VTPTGWGLPSDSA 131
Query: 171 DG 172
G
Sbjct: 132 LG 133
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 238 DVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDS 295
D +H NY++ + N+IA+++L + I + LP +V + TGWG S
Sbjct: 72 DFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTV-VTPTGWGLPS 128
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 34/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER-TVSQIYIH 385
CG L+ V++AAHC+ + D KV+ + + +P P + V + H
Sbjct: 26 CGGVLVAEQWVLSAAHCLED--AADGKVQ-----VLLGAHSLSQPEPSKRLYDVLRAVPH 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-----CIVTGWGKDKFG 440
+ + T+ +D+ L+ L K +G A P + D C V GWG
Sbjct: 79 PDSQPDTIDHDLLLLQLSE----KATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHA 134
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
GR +L+ V + ++ R C R+T G + +CA +D+CKGD GGP
Sbjct: 135 --GRRPDSLQHVLLPVLDRATCN---RRTHHDGAIT--ERLMCAESN-RRDSCKGDSGGP 186
Query: 501 LVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
LVC E G+V+ G CG+ PG+Y V + WI
Sbjct: 187 LVCGGVLE-------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ GR P+M + ++ CG L+ L+AAHC++ D V G
Sbjct: 2 LGGREAEAHARPYMASVQLNGAHL----CGGVLVAEQWVLSAAHCLEDAADGKVQVLLGA 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
++ + DVL HP+ +T+++++ LL+LS + P LP
Sbjct: 58 HSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQ 111
Query: 152 NVTYD---SENCVITGWG 166
V D C + GWG
Sbjct: 112 RVDRDVAPGTLCDVAGWG 129
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD---SENCVITGW 291
DVL HP+ +T+++++ LL+LS + P LP V D C + GW
Sbjct: 71 DVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGW 128
Query: 292 G--------RDSAETFFGEYPWM-MAILTNKINKDGSVTENVF 325
G DS + P + A + + DG++TE +
Sbjct: 129 GIVNHAGRRPDSLQHVL--LPVLDRATCNRRTHHDGAITERLM 169
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 43 EFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXX 102
+ W + L Y K + CG SLI P+ +TA HC+ TY V GE+ + V
Sbjct: 9 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEY--DRSVLEGS 66
Query: 103 XXXQRRDVLDVRIHPNYSTETLE--NNIALLKLSSNIDFDDYIHPICL-PDWNVTYDSEN 159
+ D+ +HP +++ + N+IAL+KLS + D + L P ++ +
Sbjct: 67 EQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAP 126
Query: 160 CVITGWGRDSADGGGPL 176
C I+GWGR GGPL
Sbjct: 127 CYISGWGRLYT--GGPL 141
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 32/249 (12%)
Query: 302 EYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDT 361
+ W +++ + KDG+ CG +LI P V+TA HC++ + + GE+D
Sbjct: 9 SWSWQVSL---QYEKDGAFHHT---CGGSLIAPDWVVTAGHCISTSRTYQVVL--GEYD- 59
Query: 362 ITNNRTDREPFPYQERTV----SQIYIHENFEAKTVF--NDIALIILDFPFPVKNHIGLA 415
R E+ + +++H + + V NDIAL+ L + + + LA
Sbjct: 60 -------RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLA 112
Query: 416 CTPNSAEEYDDQN-CIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGV 474
P + + ++ C ++GWG+ G G L++ + V C Q G+
Sbjct: 113 NLPPAGDILPNEAPCYISGWGRLYTG--GPLPDKLQQALLPTVDYEHCSQW----DWWGI 166
Query: 475 FKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYV 533
+ + +CA GG + C GD GGPL C + + V GC + P V+
Sbjct: 167 -TVKKTMVCA-GGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFT 224
Query: 534 DVRKFKKWI 542
V F WI
Sbjct: 225 RVSAFIDWI 233
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 238 DVRIHPNYSTETLE--NNIALLKLSSNIDFDDYIHPICL-PDWNVTYDSENCVITGWGR 293
D+ +HP +++ + N+IAL+KLS + D + L P ++ + C I+GWGR
Sbjct: 76 DLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGR 134
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 34/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER-TVSQIYIH 385
CG L+ V++AAHC+ + D KV+ + + +P P + V + H
Sbjct: 33 CGGVLVAEQWVLSAAHCLED--AADGKVQ-----VLLGAHSLSQPEPSKRLYDVLRAVPH 85
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-----CIVTGWGKDKFG 440
+ + T+ +D+ L+ L K +G A P + D C V GWG
Sbjct: 86 PDSQPDTIDHDLLLLQLSE----KATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHA 141
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
GR +L+ V + ++ R C R+T G + +CA +D+CKGD GGP
Sbjct: 142 --GRRPDSLQHVLLPVLDRATCN---RRTHHDGAIT--ERLMCAESN-RRDSCKGDSGGP 193
Query: 501 LVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
LVC E G+V+ G CG+ PG+Y V + WI
Sbjct: 194 LVCGGVLE-------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 230
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR P+M + ++ CG L+ L+AAHC++ V
Sbjct: 9 LGGREAEAHARPYMASVQLNGAHL----CGGVLVAEQWVLSAAHCLEDAADGKV----QV 60
Query: 94 INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ G +R DVL HP+ +T+++++ LL+LS + P LP
Sbjct: 61 LLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQ 118
Query: 152 NVTYDSEN---CVITGWG 166
V D C + GWG
Sbjct: 119 RVDRDVAPGTLCDVAGWG 136
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN---CVITGW 291
DVL HP+ +T+++++ LL+LS + P LP V D C + GW
Sbjct: 78 DVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGW 135
Query: 292 G--------RDSAETFFGEYPWM-MAILTNKINKDGSVTENVF 325
G DS + P + A + + DG++TE +
Sbjct: 136 GIVNHAGRRPDSLQHVL--LPVLDRATCNRRTHHDGAITERLM 176
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYS--VAAGE 91
++G G +PW + L + + CG SLI N +TAAHC VT S V AGE
Sbjct: 2 VNGEEAVPGSWPWQVSL---QDKTGFHFCGGSLINENWVVTAAHC---GVTTSDVVVAGE 55
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
F G Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP
Sbjct: 56 -FDQG---SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSA 111
Query: 152 NVTYDS-ENCVITGWG 166
+ + + CV TGWG
Sbjct: 112 SDDFAAGTTCVTTGWG 127
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 294 DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIK 353
+ E G +PW +++ +K G CG +LI + V+TAAHC + +D+
Sbjct: 3 NGEEAVPGSWPWQVSLQ----DKTG-----FHFCGGSLINENWVVTAAHC--GVTTSDVV 51
Query: 354 VRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIG 413
V GE+D +++ Q+ +++++ + + + T+ NDI L+ L +
Sbjct: 52 V-AGEFDQGSSSEK------IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVS 104
Query: 414 LACTPNSAEEY-DDQNCIVTGWGKDKF 439
C P++++++ C+ TGWG ++
Sbjct: 105 AVCLPSASDDFAAGTTCVTTGWGLTRY 131
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVITG 290
Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP + + + CV TG
Sbjct: 66 QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTG 125
Query: 291 WG 292
WG
Sbjct: 126 WG 127
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 325 FQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYI 384
F CG TLI P V+TAAHC + TD +++ G N + Q R + +I
Sbjct: 24 FFCGGTLINPEWVVTAAHCDS----TDFQMQLGVHSKKVLNEDE------QTRNPKEKFI 73
Query: 385 HENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
N V + DI LI LD P HI P+S C + GWG V+
Sbjct: 74 CPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSV-CRIMGWGSIT-PVKE 131
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
+ + L+ VCQ + L ++ + I G +D C GD GGPL+C
Sbjct: 132 TFPDVPYCANINLLDHAVCQAGYPE--LLAEYRTLCAGIVQGG---KDTCGGDSGGPLIC 186
Query: 504 QLKNERDRFTQVGIVSWGIG-CGSD-TPGVYVDVRKFKKWILDNSHG 548
+ + GIVS+G CG PG+Y +V + WI N G
Sbjct: 187 NGQFQ-------GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAG 226
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G E +++ F N F CG +LI P +TAAHC D +
Sbjct: 2 IGGNECDINEHRFLVAFF----NTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKK 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY-STETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ Q R+ + I PN + E L+ +I L+KL I +I P+ LP
Sbjct: 58 V------LNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSP 111
Query: 153 VTYDSENCVITGWG 166
+ S C I GWG
Sbjct: 112 PSVGSV-CRIMGWG 124
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLV 502
S L+ V + LV R VC+ R ++ D+ CA P + DAC+GD GGP V
Sbjct: 8 SVLQVVNLPLVERPVCKASTR-------IRITDNMFCAGYKPGEGKRGDACEGDSGGPFV 60
Query: 503 CQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+ +R+ Q+GIVSWG GC D G Y V + KKWI
Sbjct: 61 MK-SPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 100
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 87/224 (38%), Gaps = 42/224 (18%)
Query: 326 QCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH 385
+CG LI VMTAA C + V G +D R R+ F ++S +
Sbjct: 25 ECGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTF-----SISSMS-E 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTP-NSAEEYDDQNCIVTGWGKDKFGVEGR 444
++ + ND+ L+ LD + + + + P +A C V GWG + G GR
Sbjct: 79 NGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSG--GR 136
Query: 445 YQSTLKKVEVKLVPR------NVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGG 498
+ V V + P NVC L TR GG+ C GDGG
Sbjct: 137 LSRFPRFVNVTVTPEDQCRPNNVCTGVL--TRRGGI------------------CNGDGG 176
Query: 499 GPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
PLVC+ G+ S+ +G P + V F+ WI
Sbjct: 177 TPLVCEGLAH-------GVASFSLGPCGRGPDFFTRVALFRDWI 213
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD--VTYSVAAGE 91
+ GR +FP++ + +N +CG +LI +TAA C Q +V G
Sbjct: 2 VGGRKARPRQFPFLASI----QNQGSHECGGALIHARFVMTAASCFQSQNPGVSTVVLGA 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHP--NYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+ + Q R + Y + N++ LL+L + + + LP
Sbjct: 58 YDLR------RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLP 111
Query: 150 DWNVTYDS-ENCVITGWGRDSADG 172
N T ++ C + GWG + G
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGG 135
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 17/180 (9%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M + K + CG L+ LTAAHC +T ++ A +
Sbjct: 13 PYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRSMTVTLGAHN------IKAKEET 66
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV-TYDSENCVIT 163
Q V HP+Y+ + N+I LLKL N + P+ LP N + C +
Sbjct: 67 QQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVA 126
Query: 164 GWGRDSADGGGPLVCPSKEDPTTFFQVGIAAWS-VVCTPDMPGLYDVTYSVAAGEWFING 222
GWG+ + DG E P T +V + VC Y+ + G+ I G
Sbjct: 127 GWGKVTPDG---------EFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKG 177
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 83/217 (38%), Gaps = 26/217 (11%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG L+ V+TAAHC + V G + T Q V++ H
Sbjct: 30 CGGFLVRDKFVLTAAHCKGR----SMTVTLGAHNIKAKEETQ------QIIPVAKAIPHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTP-NSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ NDI L+ L + P +A C V GWG K +G +
Sbjct: 80 DYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWG--KVTPDGEF 137
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQL 505
TL +V++ + VC+ Q + + + + + +GD GGPLVC+
Sbjct: 138 PKTLHEVKLTVQKDQVCESQFQSS-----YNRANEICVGDSKIKGASFRGDSGGPLVCKR 192
Query: 506 KNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
GIVS+G GS P V+ V F WI
Sbjct: 193 -------AAAGIVSYGQTDGS-APQVFTRVLSFVSWI 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV-TYDSENCVITGWGRDSAETFF 300
HP+Y+ + N+I LLKL N + P+ LP N + C + GWG+ + +
Sbjct: 78 HPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPD--- 134
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW 359
GE+P + + + KD V E+ FQ ++ + N I V D K++G +
Sbjct: 135 GEFPKTLHEVKLTVQKD-QVCESQFQ------------SSYNRANEICVGDSKIKGASF 180
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 17/180 (9%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M + K + CG L+ LTAAHC +T ++ A +
Sbjct: 13 PYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRSMTVTLGAHN------IKAKEET 66
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV-TYDSENCVIT 163
Q V HP+Y+ + N+I LLKL N + P+ LP N + C +
Sbjct: 67 QQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVA 126
Query: 164 GWGRDSADGGGPLVCPSKEDPTTFFQVGIAAWS-VVCTPDMPGLYDVTYSVAAGEWFING 222
GWG+ + DG E P T +V + VC Y+ + G+ I G
Sbjct: 127 GWGKVTPDG---------EFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKG 177
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 82/217 (37%), Gaps = 26/217 (11%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG L+ V+TAAHC + V G + T Q V++ H
Sbjct: 30 CGGFLVRDKFVLTAAHCKGR----SMTVTLGAHNIKAKEETQ------QIIPVAKAIPHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTP-NSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ NDI L+ L + P +A C V GWG K +G +
Sbjct: 80 DYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWG--KVTPDGEF 137
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQL 505
TL +V++ + VC+ Q + + + + + + D GGPLVC
Sbjct: 138 PKTLHEVKLTVQKDQVCESQFQSS-----YNRANEICVGDSKIKGASFEEDSGGPLVC-- 190
Query: 506 KNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+ GIVS+G GS P V+ V F WI
Sbjct: 191 -----KRAAAGIVSYGQTDGS-APQVFTRVLSFVSWI 221
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV-TYDSENCVITGWGRDSAETFF 300
HP+Y+ + N+I LLKL N + P+ LP N + C + GWG+ + +
Sbjct: 78 HPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPD--- 134
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
GE+P + + + KD V E+ FQ ++ + N I V D K++G ++
Sbjct: 135 GEFPKTLHEVKLTVQKD-QVCESQFQ------------SSYNRANEICVGDSKIKGASFE 181
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query: 326 QCGATLILPHVVMTAAHC-VNNIPVT----DIKVRGGEWDTITNNRTDREPFPYQERTVS 380
+CG L+ V+TAAHC +NI VT +I+ R IT R R P
Sbjct: 28 RCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHP--------- 78
Query: 381 QIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKF 439
+ +T+ NDI L+ L ++ P + E C V GWG+
Sbjct: 79 ------QYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSM 132
Query: 440 GVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGG 499
R TL++V++++ C R+ G + + A KGD GG
Sbjct: 133 ---RRGTDTLREVQLRVQRDRQC------LRIFGSYDPRRQICVGDRRERKAAFKGDSGG 183
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
PL+C GIVS+G G P V+ V F WI
Sbjct: 184 PLLCN-------NVAHGIVSYGKSSGVP-PEVFTRVSSFLPWI 218
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I GR + P+M L + +CG L+ + LTAAHC + +V G
Sbjct: 2 IGGRESRPHSRPYMAYL-QIQSPAGQSRCGGFLVREDFVLTAAHC--WGSNINVTLGAHN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I RR + HP Y+ T++N+I LL+LS + + ++P+ LP
Sbjct: 59 IQRRENTQQHITARRAIR----HPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE 114
Query: 154 TYDSEN-CVITGWGRDSADGG 173
C + GWGR S G
Sbjct: 115 GLRPGTLCTVAGWGRVSMRRG 135
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVITGWGRDS 295
HP Y+ T++N+I LL+LS + + ++P+ LP C + GWGR S
Sbjct: 77 HPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS 131
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 86/223 (38%), Gaps = 42/223 (18%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI VMTAA C + V G +D R R+ F ++S +
Sbjct: 26 CGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTF-----SISSMS-EN 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTP-NSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ + ND+ L+ LD + + + + P +A C V GWG + G GR
Sbjct: 80 GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSG--GRL 137
Query: 446 QSTLKKVEVKLVPR------NVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGG 499
+ V V + P NVC L TR GG+ C GDGG
Sbjct: 138 SRFPRFVNVTVTPEDQCRPNNVCTGVL--TRRGGI------------------CNGDGGT 177
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
PLVC+ G+ S+ +G P + V F+ WI
Sbjct: 178 PLVCEGLAH-------GVASFSLGPCGRGPDFFTRVALFRDWI 213
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD--VTYSVAAGE 91
+ GR +FP++ + R+ CG +LI +TAA C Q +V G
Sbjct: 2 VGGRKARPRQFPFLASIQNQGRHF----CGGALIHARFVMTAASCFQSQNPGVSTVVLGA 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHP--NYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+ + Q R + Y + N++ LL+L + + + LP
Sbjct: 58 YDLR------RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLP 111
Query: 150 DWNVTYDS-ENCVITGWGRDSADG 172
N T ++ C + GWG + G
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGG 135
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query: 326 QCGATLILPHVVMTAAHC-VNNIPVT----DIKVRGGEWDTITNNRTDREPFPYQERTVS 380
+CG L+ V+TAAHC +NI VT +I+ R IT R R P
Sbjct: 28 RCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHP--------- 78
Query: 381 QIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKF 439
+ +T+ NDI L+ L ++ P + E C V GWG+
Sbjct: 79 ------QYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSM 132
Query: 440 GVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGG 499
R TL++V++++ C R+ G + + A KGD GG
Sbjct: 133 ---RRGTDTLREVQLRVQRDRQC------LRIFGSYDPRRQICVGDRRERKAAFKGDSGG 183
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
PL+C GIVS+G G P V+ V F WI
Sbjct: 184 PLLCN-------NVAHGIVSYGKSSGVP-PEVFTRVSSFLPWI 218
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I GR + P+M L + +CG L+ + LTAAHC + +V G
Sbjct: 2 IGGRESRPHSRPYMAYL-QIQSPAGQSRCGGFLVREDFVLTAAHC--WGSNINVTLGAHN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I RR + HP Y+ T++N+I LL+LS + + ++P+ LP
Sbjct: 59 IQRRENTQQHITARRAIR----HPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE 114
Query: 154 TYDSEN-CVITGWGRDSADGG 173
C + GWGR S G
Sbjct: 115 GLRPGTLCTVAGWGRVSMRRG 135
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVITGWGRDS 295
HP Y+ T++N+I LL+LS + + ++P+ LP C + GWGR S
Sbjct: 77 HPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS 131
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLV 502
S L+ V + +V R VC+ R ++ D+ CA P++ DAC+GD GGP V
Sbjct: 4 SVLQVVNLPIVERPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 503 CQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+ +R+ Q+GIVSWG GC D G Y V + KKWI
Sbjct: 57 MKSPFN-NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 447 STLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ----DACKGDGGGPLV 502
S L+ V + +V R VC+ R ++ D+ CA P++ DAC+GD GGP V
Sbjct: 4 SVLQVVNLPIVERPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 503 CQLKNERDRFTQVGIVSWGIGCGSDTP-GVYVDVRKFKKWI 542
+ +R+ Q+GIVSWG GC D G Y V + KKWI
Sbjct: 57 MKSPFN-NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 325 FQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYI 384
F CG TLI P V+TAAHC + T+ +++ G N + Q R + +I
Sbjct: 24 FFCGGTLINPEWVVTAAHCDS----TNFQMQLGVHSKKVLNEDE------QTRNPKEKFI 73
Query: 385 HENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
N V + DI LI LD P HI P+S C + GWG V+
Sbjct: 74 CPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSV-CRIMGWGSIT-PVKE 131
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVC 503
+ + L+ VCQ + L ++ + I G +D C GD GGPL+C
Sbjct: 132 TFPDVPYCANINLLDHAVCQAGYPE--LLAEYRTLCAGIVQGG---KDTCGGDSGGPLIC 186
Query: 504 QLKNERDRFTQVGIVSWGIG-CGSD-TPGVYVDVRKFKKWILDNSHG 548
+ + GIVS+G CG PG+Y +V + WI N G
Sbjct: 187 NGQFQ-------GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAG 226
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G E +++ F N F CG +LI P +TAAHC + +
Sbjct: 2 IGGNECDINEHRFLVAFF----NTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKK 57
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNY-STETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ Q R+ + I PN + E L+ +I L+KL I +I P+ LP
Sbjct: 58 V------LNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSP 111
Query: 153 VTYDSENCVITGWG 166
+ S C I GWG
Sbjct: 112 PSVGSV-CRIMGWG 124
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 34/224 (15%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER-TVSQIYIH 385
CG L+ V++AAHC+ + D KV+ + + +P P + V + H
Sbjct: 26 CGGVLVAEQWVLSAAHCLED--AADGKVQ-----VLLGAHSLSQPEPSKRLYDVLRAVPH 78
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-----CIVTGWGKDKFG 440
+ T+ +D+ L+ L K +G A P + D C V GWG
Sbjct: 79 PDSRPDTIDHDLLLLQLSE----KATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHA 134
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
GR L+ V + ++ R C R+T G +CA +D+CKGD GGP
Sbjct: 135 --GRRPDRLQHVLLPVLDRATCN---RRTHHDGAIT--QRMMCAESN-RRDSCKGDSGGP 186
Query: 501 LVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
LVC E G+V+ G CG+ PG+Y V + WI
Sbjct: 187 LVCGGVLE-------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 15/147 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR P+M + N E+ CG L+ L+AAHC++ V
Sbjct: 2 LGGREAEAHARPYM---ASVQVNGEHL-CGGVLVAEQWVLSAAHCLEDAADGKVQ----V 53
Query: 94 INGIVXXXXXXXQRR--DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ G +R DVL HP+ +T+++++ LL+LS + P LP
Sbjct: 54 LLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRP--LPWQ 111
Query: 152 NVTYDSEN---CVITGWGRDSADGGGP 175
V D E C + GWG S G P
Sbjct: 112 RVDRDVEPGTLCDVAGWGIVSHAGRRP 138
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 235 DVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN---CVITGW 291
DVL HP+ +T+++++ LL+LS + P LP V D E C + GW
Sbjct: 71 DVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVEPGTLCDVAGW 128
Query: 292 GRDSAETFFGEYPWMM----------AILTNKINKDGSVTENVF 325
G + G P + A + + DG++T+ +
Sbjct: 129 G---IVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMM 169
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 32/225 (14%)
Query: 322 ENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQ 381
+++ +CG LI V+TAAHC + I V G +N ++EP Q V +
Sbjct: 24 KSLKRCGGFLIRDDFVLTAAHCWG----SSINVTLG-----AHNIKEQEPT-QQFIPVKR 73
Query: 382 IYIHENFEAKTVFNDIALIILDFPFPVKNHIG-LACTPNSAEEYDDQNCIVTGWGKDKFG 440
H + K NDI L+ L+ + L N A+ Q C V GWG+
Sbjct: 74 PIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT--A 131
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFI-CASGGP--NQDACKGDG 497
G++ TL++V++ + C+ LR +DS I G P + + KGD
Sbjct: 132 PLGKHSHTLQEVKMTVQEDRKCESDLR--------HYYDSTIELCVGDPEIKKTSFKGDS 183
Query: 498 GGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
GGPLVC ++ Q GIVS+G G P V F WI
Sbjct: 184 GGPLVC------NKVAQ-GIVSYGRNNGM-PPRACTKVSSFVHWI 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 18/186 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G P+M L + + +CG LI + LTAAHC + + +V G
Sbjct: 2 IGGHEAKPHSRPYMAYLMIWDQK-SLKRCGGFLIRDDFVLTAAHC--WGSSINVTLGAHN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I +R + HP Y+ + N+I LL+L + P+ LP
Sbjct: 59 IKEQEPTQQFIPVKRPI----PHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKA 114
Query: 154 TYD-SENCVITGWGRDSADGGGPLVCPSKEDPTTFFQVGIAAWS-VVCTPDMPGLYDVTY 211
+ C + GWG+ + P + T +V + C D+ YD T
Sbjct: 115 QVKPGQTCSVAGWGQTA---------PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165
Query: 212 SVAAGE 217
+ G+
Sbjct: 166 ELCVGD 171
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD-SENCVITGWGRDS 295
HP Y+ + N+I LL+L + P+ LP + C + GWG+ +
Sbjct: 77 HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTA 131
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 322 ENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQ 381
N CG +LI V+TA C + + D + W I + + Q VSQ
Sbjct: 20 RNKHICGGSLIKESWVLTARQCFPSRDLKDYEA----WLGIHDVHGRGDEKCKQVLNVSQ 75
Query: 382 -IYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKF 439
+Y E +D+ L+ L P + + + PN ++ +C V GWG
Sbjct: 76 LVYGPEG-------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGL 128
Query: 440 GVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGP-NQDACKGDGG 498
Y L+ + ++ C Q R G L++S ICA C+GD G
Sbjct: 129 I---NYDGLLRVAHLYIMGNEKCSQHHR-----GKVTLNESEICAGAEKIGSGPCEGDYG 180
Query: 499 GPLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
GPLVC+ R +G++ G GC + PG++V V + KWI
Sbjct: 181 GPLVCEQHKMR---MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 46 WMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXX 105
WM+ L Y +++ CG SLI + LTA C A W GI
Sbjct: 13 WMVSLRYRNKHI----CGGSLIKESWVLTARQCFPSRDLKDYEA--WL--GIHDVHGRGD 64
Query: 106 QR-RDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVIT 163
++ + VL+V Y E +++ L+KL+ DD++ I LP++ T + +C +
Sbjct: 65 EKCKQVLNVS-QLVYGPEG--SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVY 121
Query: 164 GWG 166
GWG
Sbjct: 122 GWG 124
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 252 NNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWG 292
+++ L+KL+ DD++ I LP++ T + +C + GWG
Sbjct: 83 SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWG 124
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 322 ENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQ 381
N CG +LI V+TA C + + D + W I + + Q VSQ
Sbjct: 20 RNKHICGGSLIKESWVLTARQCFPSRDLKDYEA----WLGIHDVHGRGDEKCKQVLNVSQ 75
Query: 382 -IYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKF 439
+Y E +D+ L+ L P + + + PN ++ +C V GWG
Sbjct: 76 LVYGPEG-------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGL 128
Query: 440 GVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGP-NQDACKGDGG 498
Y L+ + ++ C Q R G L++S ICA C+GD G
Sbjct: 129 I---NYDGLLRVAHLYIMGNEKCSQHHR-----GKVTLNESEICAGAEKIGSGPCEGDYG 180
Query: 499 GPLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWI 542
GPLVC+ R +G++ G GC + PG++V V + KWI
Sbjct: 181 GPLVCEQHKMR---MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 46 WMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXX 105
WM+ L Y +++ CG SLI + LTA C A W GI
Sbjct: 13 WMVSLRYRNKHI----CGGSLIKESWVLTARQCFPSRDLKDYEA--WL--GIHDVHGRGD 64
Query: 106 QR-RDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVIT 163
++ + VL+V Y E +++ L+KL+ DD++ I LP++ T + +C +
Sbjct: 65 EKCKQVLNVS-QLVYGPEG--SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVY 121
Query: 164 GWG 166
GWG
Sbjct: 122 GWG 124
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 252 NNIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWG 292
+++ L+KL+ DD++ I LP++ T + +C + GWG
Sbjct: 83 SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWG 124
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 32/225 (14%)
Query: 322 ENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQ 381
+++ +CG LI V+TAAHC + I V G +N ++EP Q V +
Sbjct: 24 KSLKRCGGFLIQDDFVLTAAHCWG----SSINVTLG-----AHNIKEQEPT-QQFIPVKR 73
Query: 382 IYIHENFEAKTVFNDIALIILDFPFPVKNHIG-LACTPNSAEEYDDQNCIVTGWGKDKFG 440
H + K NDI L+ L+ + L N A+ Q C V GWG+
Sbjct: 74 PIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT--A 131
Query: 441 VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFI-CASGGP--NQDACKGDG 497
G++ TL++V++ + C+ LR +DS I G P + + KGD
Sbjct: 132 PLGKHSHTLQEVKMTVQEDRKCESDLR--------HYYDSTIELCVGDPEIKKTSFKGDS 183
Query: 498 GGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
GGPLVC ++ Q GIVS+G G P V F WI
Sbjct: 184 GGPLVC------NKVAQ-GIVSYGRNNGM-PPRACTKVSSFVHWI 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 18/186 (9%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G P+M L + + +CG LI + LTAAHC + + +V G
Sbjct: 2 IGGHEAKPHSRPYMAYLMIWDQK-SLKRCGGFLIQDDFVLTAAHC--WGSSINVTLGAHN 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I +R + HP Y+ + N+I LL+L + P+ LP
Sbjct: 59 IKEQEPTQQFIPVKRPI----PHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKA 114
Query: 154 TYD-SENCVITGWGRDSADGGGPLVCPSKEDPTTFFQVGIAAWS-VVCTPDMPGLYDVTY 211
+ C + GWG+ + P + T +V + C D+ YD T
Sbjct: 115 QVKPGQTCSVAGWGQTA---------PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165
Query: 212 SVAAGE 217
+ G+
Sbjct: 166 ELCVGD 171
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD-SENCVITGWGRDS 295
HP Y+ + N+I LL+L + P+ LP + C + GWG+ +
Sbjct: 77 HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTA 131
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGSDTPGVYVD 534
K+ D CA G D+C GD GGPLVCQ + +T GIVSWG G C + TPGVY
Sbjct: 29 KITDVMTCA-GASGVDSCMGDSGGPLVCQ---KDGVWTLAGIVSWGSGVCSTSTPGVYSR 84
Query: 535 VRKFKKWI 542
V W+
Sbjct: 85 VTALMPWV 92
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 166 GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVCTPDMPGLY 207
G DS D GGPLVC + + GI +W S VC+ PG+Y
Sbjct: 41 GVDSCMGDSGGPLVC---QKDGVWTLAGIVSWGSGVCSTSTPGVY 82
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGSDTPGVYVD 534
K+ D+ ICA G +C GD GGPLVC+ + +T VGIVSWG C + TPGVY
Sbjct: 27 KIKDAMICA-GASGVSSCMGDSGGPLVCK---KNGAWTLVGIVSWGSSTCSTSTPGVYAR 82
Query: 535 VRKFKKWI 542
V W+
Sbjct: 83 VTALVNWV 90
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 170 ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVCTPDMPGLY 207
D GGPLVC T VGI +W S C+ PG+Y
Sbjct: 45 GDSGGPLVCKKNGAWTL---VGIVSWGSSTCSTSTPGVY 80
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGSDTPGVYVD 534
K+ D+ ICA G +C GD GGPLVC+ + +T VGIVSWG C + TPGVY
Sbjct: 26 KIKDAMICA-GASGVSSCMGDSGGPLVCK---KNGAWTLVGIVSWGSSTCSTSTPGVYAR 81
Query: 535 VRKFKKWI 542
V W+
Sbjct: 82 VTALVNWV 89
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 170 ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVCTPDMPGLY 207
D GGPLVC T VGI +W S C+ PG+Y
Sbjct: 44 GDSGGPLVCKKNGAWTL---VGIVSWGSSTCSTSTPGVY 79
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G + P+M L N CG LI N LTAAHC +T ++ A
Sbjct: 2 IGGTESKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHN-- 59
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWN 152
+ Q+ +V+ HP Y+T TL ++I LLKL + + P +N
Sbjct: 60 ----ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFN 115
Query: 153 VTYDSENCVITGWGR 167
C + GWGR
Sbjct: 116 FVPPGRMCRVAGWGR 130
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI + V+TAAHC I V G +N T+ E +Q+ V + + H
Sbjct: 30 CGGFLIRRNFVLTAAHCAGR----SITVTLG-----AHNITEEED-TWQKLEVIKQFRHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ T+ +DI L+ L + +G P+ + C V GWG+ GV
Sbjct: 80 KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRT--GVLKPG 137
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK--LHDSFICASGGPN--QDACKGDGGGPL 501
TL++V+++L+ C F+ H+ +C G P + A KGD GGPL
Sbjct: 138 SDTLQEVKLRLMDPQACSH----------FRDFDHNLQLCV-GNPRKTKSAFKGDSGGPL 186
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+C + GIVS+G + P V+ + ++ WI
Sbjct: 187 LCAGVAQ-------GIVSYG-RSDAKPPAVFTRISHYRPWI 219
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITG 290
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C + G
Sbjct: 68 QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAG 127
Query: 291 WGR 293
WGR
Sbjct: 128 WGR 130
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M L N CG LI N LTAAHC +T ++ A +
Sbjct: 15 PYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHN------ITEEEDT 68
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVIT 163
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C +
Sbjct: 69 WQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVA 128
Query: 164 GWGR 167
GWGR
Sbjct: 129 GWGR 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI + V+TAAHC I V T+ + E +Q+ V + + H
Sbjct: 32 CGGFLIRRNFVLTAAHCAGR----SITV------TLGAHNITEEEDTWQKLEVIKQFRHP 81
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ T+ +DI L+ L + +G P+ + C V GWG+ GV
Sbjct: 82 KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRT--GVLKPG 139
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK--LHDSFICASGGPN--QDACKGDGGGPL 501
TL++V+++L+ C F+ H+ +C G P + A KGD GGPL
Sbjct: 140 SDTLQEVKLRLMDPQACSH----------FRDFDHNLQLCV-GNPRKTKSAFKGDSGGPL 188
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+C + GIVS+G + P V+ + ++ WI
Sbjct: 189 LCAGVAQ-------GIVSYGRS-DAKPPAVFTRISHYRPWI 221
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITG 290
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C + G
Sbjct: 70 QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAG 129
Query: 291 WGR 293
WGR
Sbjct: 130 WGR 132
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M L N CG LI N LTAAHC +T ++ A +
Sbjct: 13 PYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHN------ITEEEDT 66
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVIT 163
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C +
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVA 126
Query: 164 GWGR 167
GWGR
Sbjct: 127 GWGR 130
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI + V+TAAHC I V G +N T+ E +Q+ V + + H
Sbjct: 30 CGGFLIRRNFVLTAAHCAGR----SITVTLG-----AHNITEEED-TWQKLEVIKQFRHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ T+ +DI L+ L + +G P+ + C V GWG+ GV
Sbjct: 80 KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRT--GVLKPG 137
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK--LHDSFICASGGPN--QDACKGDGGGPL 501
TL++V+++L+ C F+ H+ +C G P + A KGD GGPL
Sbjct: 138 SDTLQEVKLRLMDPQACSH----------FRDFDHNLQLCV-GNPRKTKSAFKGDSGGPL 186
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+C + GIVS+G + P V+ + ++ WI
Sbjct: 187 LCAGAAQ-------GIVSYGRS-DAKPPAVFTRISHYQPWI 219
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITG 290
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C + G
Sbjct: 68 QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAG 127
Query: 291 WGR 293
WGR
Sbjct: 128 WGR 130
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI + V+TAAHC I V G +N T+ E +Q+ V + + H
Sbjct: 30 CGGFLIRRNFVLTAAHCAGR----SITVTLG-----AHNITEEED-TWQKLEVIKQFRHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ T+ +DI L+ L + +G P+ + C V GWG+ GV
Sbjct: 80 KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAGWGRT--GVLKPG 137
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK--LHDSFICASGGPN--QDACKGDGGGPL 501
TL++V+++L+ C F+ H+ +C G P + A KGD GGPL
Sbjct: 138 SDTLQEVKLRLMDPQACSH----------FRDFDHNLQLCV-GNPRKTKSAFKGDSGGPL 186
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+C + GIVS+G + P V+ + ++ WI
Sbjct: 187 LCAGAAQ-------GIVSYGRS-DAKPPAVFTRISHYQPWI 219
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M L N CG LI N LTAAHC +T ++ A +
Sbjct: 13 PYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHN------ITEEEDT 66
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW-NVTYDSENCVIT 163
Q+ +V+ HP Y+T TL ++I LLKL + + P N C +
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVA 126
Query: 164 GWGR 167
GWGR
Sbjct: 127 GWGR 130
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW-NVTYDSENCVITG 290
Q+ +V+ HP Y+T TL ++I LLKL + + P N C + G
Sbjct: 68 QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAG 127
Query: 291 WGR 293
WGR
Sbjct: 128 WGR 130
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M L N CG LI N LTAAHC +T ++ A +
Sbjct: 13 PYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHN------ITEEEDT 66
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVIT 163
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C +
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVA 126
Query: 164 GWGR 167
GWGR
Sbjct: 127 GWGR 130
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI + V+TAAHC I V G +N T+ E +Q+ V + + H
Sbjct: 30 CGGFLIRRNFVLTAAHCAGR----SITVTLG-----AHNITEEED-TWQKLEVIKQFRHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRY 445
+ T+ +DI L+ L + +G P+ + C V GWG+ GV
Sbjct: 80 KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRT--GVLKPG 137
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK--LHDSFICASGGPN--QDACKGDGGGPL 501
TL++V+++L+ C F+ H+ +C G P + A KGD GGPL
Sbjct: 138 SDTLQEVKLRLMDPQACSH----------FRDFDHNLQLCV-GNPRKTKSAFKGDSGGPL 186
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+C + GIVS+G + P V+ + ++ WI
Sbjct: 187 LCAGVAQ-------GIVSYGRS-DAKPPAVFTRISHYRPWI 219
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITG 290
Q+ +V+ HP Y+T TL ++I LLKL + + P +N C + G
Sbjct: 68 QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAG 127
Query: 291 WGR 293
WGR
Sbjct: 128 WGR 130
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G + G +PW + L + + CG SLI + +TAAHC + V AGE F
Sbjct: 1 GEDAIPGSWPWQVSL---QDKTGFHFCGGSLISEDWVVTAAHC-GVKTSDVVVAGE-FDQ 55
Query: 96 GIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
G Q + V +P ++ T+ N+I LLKL++ F + + +CLP+ + +
Sbjct: 56 G---SDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDF 112
Query: 156 DSEN-CVITGWGR 167
C TGWG+
Sbjct: 113 PPGTVCATTGWGK 125
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G +PW +++ +K G CG +LI V+TAAHC + +D+ V GE+D
Sbjct: 7 GSWPWQVSLQ----DKTG-----FHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFD 54
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+D E Q ++Q++ + F TV NDI L+ L P + C PN
Sbjct: 55 ----QGSDEENI--QVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNV 108
Query: 421 AEEYDDQN-CIVTGWGKDKF 439
+++ C TGWGK K+
Sbjct: 109 DDDFPPGTVCATTGWGKTKY 128
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVITG 290
Q + V +P ++ T+ N+I LLKL++ F + + +CLP+ + + C TG
Sbjct: 63 QVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTG 122
Query: 291 WGR 293
WG+
Sbjct: 123 WGK 125
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRG 356
E E+ +++A+ T++ + +F CG TLI V+TAAHC + +++
Sbjct: 6 ECNINEHRFLVALYTSR-------SRTLF-CGGTLINQEWVLTAAHCDRK----NFRIKL 53
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-DIALIILDFPFPVKNHIGLA 415
G N + Q R + + + + T+++ DI LI LD P HI
Sbjct: 54 GMHSKKVPNEDE------QTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPF 107
Query: 416 CTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
P+S C + GWG+ EG Y V + L+ +C+ + L
Sbjct: 108 SLPSSPPSVGSV-CRIMGWGRIS-PTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATS 165
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYV 533
+ + I G +D CKGD GGPL+C + + GI SWG C P Y
Sbjct: 166 RTLCAGILEGG---KDTCKGDSGGPLICNGQFQ-------GIASWGDDPCAQPHKPAAYT 215
Query: 534 DVRKFKKWI 542
V WI
Sbjct: 216 KVFDHLDWI 224
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 47 MLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQ 106
LV Y R+ F CG +LI LTAAHC + + + + +
Sbjct: 14 FLVALYTSRSRTLF-CGGTLINQEWVLTAAHCDRKNFRIKLGMHSKKVPNEDEQTRVPKE 72
Query: 107 RRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
+ L + NY+ + +I L++L S + +I P LP + S C I GWG
Sbjct: 73 KFFCLSSK---NYT--LWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSV-CRIMGWG 126
Query: 167 RDSADGG 173
R S G
Sbjct: 127 RISPTEG 133
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 85/223 (38%), Gaps = 42/223 (18%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG LI VMTAA C + V G +D R R+ F ++S +
Sbjct: 26 CGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTF-----SISSMS-EN 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTP-NSAEEYDDQNCIVTGWGKDKFGVEGRY 445
++ + ND+ L+ LD + + + + P +A C V GWG + G GR
Sbjct: 80 GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSG--GRL 137
Query: 446 QSTLKKVEVKLVPR------NVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGG 499
+ V V + P NVC L TR GG+ C GD G
Sbjct: 138 SRFPRFVNVTVTPEDQCRPNNVCTGVL--TRRGGI------------------CNGDQGT 177
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
PLVC+ G+ S+ +G P + V F+ WI
Sbjct: 178 PLVCEGLAH-------GVASFSLGPCGRGPDFFTRVALFRDWI 213
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD--VTYSVAAGE 91
+ GR +FP++ + R+ CG +LI +TAA C Q +V G
Sbjct: 2 VGGRKARPRQFPFLASIQNQGRHF----CGGALIHARFVMTAASCFQSQNPGVSTVVLGA 57
Query: 92 WFINGIVXXXXXXXQRRDVLDVRIHP--NYSTETLENNIALLKLSSNIDFDDYIHPICLP 149
+ + Q R + Y + N++ LL+L + + + LP
Sbjct: 58 YDLR------RRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLP 111
Query: 150 DWNVTYDS-ENCVITGWGRDSADG 172
N T ++ C + GWG + G
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGG 135
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 36/229 (15%)
Query: 320 VTENVFQ--CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER 377
VTE + CG LI V+TAAHC +I V G D T Q+
Sbjct: 21 VTEKGLRVICGGFLISRQFVLTAAHCKGR----EITVILGAHDVRKRESTQ------QKI 70
Query: 378 TVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAE-EYDDQNCIVTGWGK 436
V + IHE++ + +DI L+ L+ + + + P+ ++ + C GWGK
Sbjct: 71 KVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK 130
Query: 437 DKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD-SFICASGGPN--QDAC 493
GV TL++VE++++ C ++ ++ F G P + A
Sbjct: 131 T--GVRDPTSYTLREVELRIMDEKACVD----------YRYYEYKFQVCVGSPTTLRAAF 178
Query: 494 KGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
GD GGPL+C GIVS+G + P ++ V + WI
Sbjct: 179 MGDSGGPLLCA-------GVAHGIVSYG-HPDAKPPAIFTRVSTYVPWI 219
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G + P+M L CG LI LTAAHC ++T + A +
Sbjct: 2 IGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREITVILGAHD-- 59
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD-WN 152
V Q+ V IH +Y++ ++I LLKL ++ ++ + LP +
Sbjct: 60 ----VRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSD 115
Query: 153 VTYDSENCVITGWGR 167
+ C GWG+
Sbjct: 116 FIHPGAMCWAAGWGK 130
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 326 QCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH 385
+CG L+ V+TAAHC + I V G + RT Q V + H
Sbjct: 28 RCGGILVRKDFVLTAAHCQG----SSINVTLGAHNIKEQERTQ------QFIPVKRPIPH 77
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS-AEEYDDQNCIVTGWGKDKFGVEGR 444
+ K NDI L+ L+ + P+S A+ Q C V GWG +
Sbjct: 78 PAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWG---YVSMST 134
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPN--QDACKGDGGGPLV 502
+TL+ EV L + CQ + RL + IC G P Q KGD GGPLV
Sbjct: 135 LATTLQ--EVLLTVQKDCQCE----RLFHGNYSRATEICV-GDPKKTQTGFKGDSGGPLV 187
Query: 503 CQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
C+ + GI+S+G G+ PGVY+ V F WI
Sbjct: 188 CKDVAQ-------GILSYGNKKGTP-PGVYIKVSHFLPWI 219
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 34 ISGRNTYFGEFPWM-LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEW 92
I G P+M V F +++ + +CG L+ + LTAAHC + ++ A
Sbjct: 2 IGGHEAKPHSRPYMAFVQFLQEKSRK--RCGGILVRKDFVLTAAHCQGSSINVTLGAHN- 58
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ Q V HP Y+ + N+I LL+L + + P+ LP
Sbjct: 59 -----IKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSK 113
Query: 153 VTYD-SENCVITGWG 166
+ C + GWG
Sbjct: 114 AQVKPGQLCSVAGWG 128
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD-SENCVITGWGRDSAETF 299
HP Y+ + N+I LL+L + + P+ LP + C + GWG S T
Sbjct: 77 HPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTL 135
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 38/232 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDR-----EPFPYQERTVSQ 381
CG L+ P V+TAAHC+ N V + G T + FP+ +S
Sbjct: 26 CGGVLVHPQWVLTAAHCIRNKSVILL----GRHSLFHPEDTGQVFQVSHSFPHPLYDMSL 81
Query: 382 IYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGK---DK 438
+ +D+ L+ L P + + + + P + E C +GWG ++
Sbjct: 82 LKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLP-TQEPALGTTCYASGWGSIEPEE 140
Query: 439 FGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKG 495
F + Q V++ ++ +VC Q + K+ +CA +GG + C G
Sbjct: 141 FLTPKKLQC----VDLHVISNDVCAQVHPQ-------KVTKFMLCAGRWTGG--KSTCSG 187
Query: 496 DGGGPLVCQLKNERDRFTQVGIVSWGI-GCG-SDTPGVYVDVRKFKKWILDN 545
D GGPLVC + GI SWG C + P +Y V ++KWI D
Sbjct: 188 DSGGPLVCNGVLQ-------GITSWGSEPCALPERPSLYTKVVHYRKWIKDT 232
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
PW +++ R + CG L+ P LTAAHC++ + F
Sbjct: 13 PWQVLVASRGRAV----CGGVLVHPQWVLTAAHCIRNKSVILLGRHSLF------HPEDT 62
Query: 105 XQRRDVLDVRIHPNYSTETLEN-----------NIALLKLSSNIDFDDYIHPICLPDWNV 153
Q V HP Y L+N ++ LL+LS + D + + LP
Sbjct: 63 GQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEP 122
Query: 154 TYDSENCVITGWG 166
+ C +GWG
Sbjct: 123 ALGT-TCYASGWG 134
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 476 KLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGSDTPGVYVD 534
K+ D CA G D+C GD GGPLVCQ + +T GIVSWG G C + TP VY
Sbjct: 29 KITDVMTCA-GASGVDSCMGDSGGPLVCQ---KDGVWTLAGIVSWGSGVCSTSTPAVYSR 84
Query: 535 VRKFKKWI 542
V W+
Sbjct: 85 VTALMPWV 92
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 287 VITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNN 346
+I GW E PW +A+ + FQCG L+ P V+TAAHC+++
Sbjct: 1 IIGGW-----ECEKHSKPWQVAV----------YHQGHFQCGGVLVHPQWVLTAAHCMSD 45
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKT-----------VFN 395
D ++ W N D + + + VS ++ F+ + +
Sbjct: 46 ----DYQI----WLGRHNLSKDEDTAQFHQ--VSDSFLDPQFDLSLLKKKYLRPYDDISH 95
Query: 396 DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVK 455
D+ L+ L P + + + + P + E C +GWG R TL+ VE++
Sbjct: 96 DLMLLRLAQPARITDAVKILDLP-TQEPKLGSTCYTSGWGLIS-TFTNRGSGTLQCVELR 153
Query: 456 LVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDA-CKGDGGGPLVCQLKNERDRFTQ 514
L C + + K+ + +CA+ + + C GD GG L+C D Q
Sbjct: 154 LQSNEKCARAYPE-------KMTEFVLCATHRDDSGSICLGDSGGALIC------DGVFQ 200
Query: 515 VGIVSWGIGCGSDTPG--VYVDVRKFKKWI 542
GI SWG +D V+ V KKWI
Sbjct: 201 -GITSWGYSECADFNDNFVFTKVMPHKKWI 229
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 25/148 (16%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
PW + +++ +F+CG L+ P LTAAHC+ D Y + W +
Sbjct: 13 PWQVAVYH----QGHFQCGGVLVHPQWVLTAAHCMSDD--YQI----WLGRHNLSKDEDT 62
Query: 105 XQRRDVLDVRIHPNYSTETLE-----------NNIALLKLSSNIDFDDYIHPICLPDWNV 153
Q V D + P + L+ +++ LL+L+ D + + LP
Sbjct: 63 AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEP 122
Query: 154 TYDSENCVITGWGRDSA---DGGGPLVC 178
S C +GWG S G G L C
Sbjct: 123 KLGS-TCYTSGWGLISTFTNRGSGTLQC 149
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 96/224 (42%), Gaps = 44/224 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CGATLI P+ VM+AAHCV N+ V ++V G +N + REP Q V +I+ +
Sbjct: 26 CGATLIAPNFVMSAAHCVANVNVRAVRVVLG-----AHNLSRREP-TRQVFAVQRIF-ED 78
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKFGVEGRY 445
++ + NDI ++ L+ + ++ +A P + C+ GWG G
Sbjct: 79 GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWG--LLGRNRGI 136
Query: 446 QSTLKKVEVKLVP-----RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
S L+++ V +V NVC L + R GV C GD G P
Sbjct: 137 ASVLQELNVTVVTSLCRRSNVC--TLVRGRQAGV------------------CFGDSGSP 176
Query: 501 LVCQ-LKNERDRFTQVGIVSWGIGCGSDT-PGVYVDVRKFKKWI 542
LVC L + F + GC S P + V +F WI
Sbjct: 177 LVCNGLIHGIASFVRG-------GCASGLYPDAFAPVAQFVNWI 213
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR +P+M+ L + CGA+LI PN ++AAHCV +V
Sbjct: 2 VGGRRARPHAWPFMVSLQLAGGHF----CGATLIAPNFVMSAAHCVANVNVRAVRVVLGA 57
Query: 94 INGIVXXXXXXXQRRDVLDVR--IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
N R V V+ Y L N+I +L+L+ + + + LP
Sbjct: 58 HN-----LSRREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 152 NVTY-DSENCVITGWG 166
+ C+ GWG
Sbjct: 113 GRRLGNGVQCLAMGWG 128
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
++G + G +PW + L + + CG SLI + +TAAHC + V AGE F
Sbjct: 2 VNGEDAIPGSWPWQVSL---QDKTGFHFCGGSLISEDWVVTAAHC-GVKTSDVVVAGE-F 56
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
G Q + V +P ++ T+ N+I LLKL++ F + + + LP+ +
Sbjct: 57 DQG---SDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNVDD 113
Query: 154 TYDSEN-CVITGWGR 167
+ C TGWG+
Sbjct: 114 DFPPGTVCATTGWGK 128
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G +PW +++ +K G CG +LI V+TAAHC + +D+ V GE+D
Sbjct: 10 GSWPWQVSLQ----DKTG-----FHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFD 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+D E Q ++Q++ + F TV NDI L+ L P + PN
Sbjct: 58 ----QGSDEENI--QVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNV 111
Query: 421 AEEYDDQN-CIVTGWGKDKF 439
+++ C TGWGK K+
Sbjct: 112 DDDFPPGTVCATTGWGKTKY 131
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN-CVITG 290
Q + V +P ++ T+ N+I LLKL++ F + + + LP+ + + C TG
Sbjct: 66 QVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTG 125
Query: 291 WGR 293
WG+
Sbjct: 126 WGK 128
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 31/232 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
C LI V+TAAHC N+ + G T RE Q V + + +
Sbjct: 26 CAGALIAKDWVLTAAHC--NLNKRSQVILGAHSIT-------REEPTKQIMLVKKEFPYP 76
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEGRY 445
++ T D+ L+ L + ++ + P ++ C V GWG+ +
Sbjct: 77 CYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSAS--W 134
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
TL++VE+ ++ R VC + V ++ +CA GG +D+C GD G PL+
Sbjct: 135 SDTLREVEITIIDRKVCNDR-NHYNFNPVIGMN--MVCAGSLRGG--RDSCNGDSGSPLL 189
Query: 503 CQLKNERDRFTQVGIVSWGI--GCGSDT-PGVYVDV-RKFKKWILDNSHGKI 550
C+ G+ S+G+ CG PGVY+ + +K WI+ G +
Sbjct: 190 CE-------GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV 234
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 326 QCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH 385
+CG L+ V+TAAHC + I V G + RT Q V + H
Sbjct: 28 RCGGILVRKDFVLTAAHCQG----SSINVTLGAHNIKEQERTQ------QFIPVKRPIPH 77
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS-AEEYDDQNCIVTGWGKDKFGVEGR 444
+ K N+I L+ L+ + P+S A+ Q C V GWG +
Sbjct: 78 PAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWG---YVSMST 134
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPN--QDACKGDGGGPLV 502
+TL+ EV L + CQ + RL + IC G P Q KGD GGPLV
Sbjct: 135 LATTLQ--EVLLTVQKDCQCE----RLFHGNYSRATEICV-GDPKKTQTGFKGDSGGPLV 187
Query: 503 CQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
C+ + GI+S+G G+ PGVY+ V F WI
Sbjct: 188 CKDVAQ-------GILSYGNKKGTP-PGVYIKVSHFLPWI 219
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 34 ISGRNTYFGEFPWM-LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEW 92
I G P+M V F +++ + +CG L+ + LTAAHC + ++ A
Sbjct: 2 IGGHEAKPHSRPYMAFVQFLQEKSRK--RCGGILVRKDFVLTAAHCQGSSINVTLGAHN- 58
Query: 93 FINGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ Q V HP Y+ + NNI LL+L + + P+ LP
Sbjct: 59 -----IKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSK 113
Query: 153 VTYD-SENCVITGWG 166
+ C + GWG
Sbjct: 114 AQVKPGQLCSVAGWG 128
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYD-SENCVITGWGRDSAETF 299
HP Y+ + NNI LL+L + + P+ LP + C + GWG S T
Sbjct: 77 HPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTL 135
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 35/251 (13%)
Query: 304 PWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTIT 363
PW + +L V E F CG +++ + V+TAA CV+ +DI + G +
Sbjct: 13 PWAVGVL---------VDEKPF-CGGSILTANFVITAAQCVDGTKPSDISIHYG-----S 57
Query: 364 NNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEE 423
+ RT + +IYI + T+ N+ A+I + P + + S
Sbjct: 58 SYRTTKG----TSVMAKKIYIV-RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSL-L 111
Query: 424 YD---DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
YD D + +V+GWG F Y L + +V R C++Q ++ ++D
Sbjct: 112 YDPEPDTSVLVSGWGSTNFK-SLEYSGDLMEANFTVVDRKSCEEQYKQIEADKY--IYDG 168
Query: 481 FICASGGPNQDACK-GDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFK 539
CA G ++ GD G P V T VG+ S+ S+ P V++ V +
Sbjct: 169 VFCAGGEYDETYIGYGDAGDPAV-------QNGTLVGVASYISSMPSEFPSVFLRVGYYV 221
Query: 540 KWILDNSHGKI 550
I D GK+
Sbjct: 222 LDIKDIISGKV 232
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G+ + + PW + + ++ CG S++ N +TAA CV D T +
Sbjct: 2 IGGKKSDITKEPWAVGVLVDEKPF----CGGSILTANFVITAAQCV--DGTKPSDISIHY 55
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDY-IHPICLPDWN 152
+ + + VR HP T++NN A+++ I DD I LP +
Sbjct: 56 GSSYRTTKGTSVMAKKIYIVRYHP----LTMQNNYAVIETEMPIKLDDKTTKKIELP--S 109
Query: 153 VTYDSE---NCVITGWG 166
+ YD E + +++GWG
Sbjct: 110 LLYDPEPDTSVLVSGWG 126
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 96/224 (42%), Gaps = 44/224 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CGATLI P+ VM+AAHCV N+ V ++V G +N + REP Q V +I+ +
Sbjct: 26 CGATLIAPNFVMSAAHCVANVNVRAVRVVLG-----AHNLSRREP-TRQVFAVQRIF-ED 78
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKFGVEGRY 445
++ + NDI ++ L+ + ++ +A P + C+ GWG G
Sbjct: 79 GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWG--LLGRNRGI 136
Query: 446 QSTLKKVEVKLVP-----RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
S L+++ V +V NVC L + R GV C GD G P
Sbjct: 137 ASVLQELNVTVVTSLCRRSNVC--TLVRGRQAGV------------------CFGDSGSP 176
Query: 501 LVCQ-LKNERDRFTQVGIVSWGIGCGSDT-PGVYVDVRKFKKWI 542
LVC L + F + GC S P + V +F WI
Sbjct: 177 LVCNGLIHGIASFVRG-------GCASGLYPDAFAPVAQFVNWI 213
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR +P+M+ L R + CGA+LI PN ++AAHCV +V
Sbjct: 2 VGGRRARPHAWPFMVSL--QLRGGHF--CGATLIAPNFVMSAAHCVANVNVRAVRVVLGA 57
Query: 94 INGIVXXXXXXXQRRDVLDVR--IHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
N R V V+ Y L N+I +L+L+ + + + LP
Sbjct: 58 HN-----LSRREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 152 NVTY-DSENCVITGWG 166
+ C+ GWG
Sbjct: 113 GRRLGNGVQCLAMGWG 128
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CGATLI P+ VM+AAHCV N+ V ++V G +N + REP Q V +I+
Sbjct: 26 CGATLIAPNFVMSAAHCVANVNVRAVRVVLG-----AHNLSRREP-TRQVFAVQRIF-EN 78
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKFGVEGRY 445
++ + NDI ++ L+ + ++ +A P + C+ GWG G
Sbjct: 79 GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWG--LLGRNRGI 136
Query: 446 QSTLKKVEVKLVP-----RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
S L+++ V +V NVC L + R GV C GD G P
Sbjct: 137 ASVLQELNVTVVTSLCRRSNVC--TLVRGRQAGV------------------CFGDSGSP 176
Query: 501 LVCQ-LKNERDRFTQVGIVSWGIGCGSDT-PGVYVDVRKFKKWI 542
LVC L + F + GC S P + V +F WI
Sbjct: 177 LVCNGLIHGIASFVRG-------GCASGLYPDAFAPVAQFVNWI 213
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR +P+M+ L R + CGA+LI PN ++AAHCV +V
Sbjct: 2 VGGRRARPHAWPFMVSL--QLRGGHF--CGATLIAPNFVMSAAHCVANVNVRAVRVVLGA 57
Query: 94 INGIVXXXXXXXQRRDVLDV-RIHPN-YSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
N R V V RI N Y L N+I +L+L+ + + + LP
Sbjct: 58 HN-----LSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 152 NVTY-DSENCVITGWG 166
+ C+ GWG
Sbjct: 113 GRRLGNGVQCLAMGWG 128
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CGATLI P+ VM+AAHCV N+ V ++V G +N + REP Q V +I+
Sbjct: 26 CGATLIAPNFVMSAAHCVANVNVRAVRVVLG-----AHNLSRREP-TRQVFAVQRIF-EN 78
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKFGVEGRY 445
++ + NDI ++ L+ + ++ +A P + C+ GWG G
Sbjct: 79 GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWG--LLGRNRGI 136
Query: 446 QSTLKKVEVKLVP-----RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
S L+++ V +V NVC L + R GV C GD G P
Sbjct: 137 ASVLQELNVTVVTSLCRRSNVC--TLVRGRQAGV------------------CFGDSGSP 176
Query: 501 LVCQ-LKNERDRFTQVGIVSWGIGCGSDT-PGVYVDVRKFKKWI 542
LVC L + F + GC S P + V +F WI
Sbjct: 177 LVCNGLIHGIASFVRG-------GCASGLYPDAFAPVAQFVNWI 213
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR +P+M+ L R + CGA+LI PN ++AAHCV +V
Sbjct: 2 VGGRRARPHAWPFMVSL--QLRGGHF--CGATLIAPNFVMSAAHCVANVNVRAVRVVLGA 57
Query: 94 INGIVXXXXXXXQRRDVLDV-RIHPN-YSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
N R V V RI N Y L N+I +L+L+ + + + LP
Sbjct: 58 HN-----LSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 152 NVTY-DSENCVITGWG 166
+ C+ GWG
Sbjct: 113 GRRLGNGVQCLAMGWG 128
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CGATLI P+ VM+AAHCV N+ V ++V G +N + REP Q V +I+
Sbjct: 26 CGATLIAPNFVMSAAHCVANVNVRAVRVVLG-----AHNLSRREP-TRQVFAVQRIF-EN 78
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQ-NCIVTGWGKDKFGVEGRY 445
++ + NDI ++ L+ + ++ +A P + C+ GWG G
Sbjct: 79 GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWG--LLGRNRGI 136
Query: 446 QSTLKKVEVKLVP-----RNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGP 500
S L+++ V +V NVC L + R GV C GD G P
Sbjct: 137 ASVLQELNVTVVTSLCRRSNVC--TLVRGRQAGV------------------CFGDXGSP 176
Query: 501 LVCQ-LKNERDRFTQVGIVSWGIGCGSDT-PGVYVDVRKFKKWI 542
LVC L + F + GC S P + V +F WI
Sbjct: 177 LVCNGLIHGIASFVRG-------GCASGLYPDAFAPVAQFVNWI 213
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR +P+M+ L R + CGA+LI PN ++AAHCV +V
Sbjct: 2 VGGRRARPHAWPFMVSL--QLRGGHF--CGATLIAPNFVMSAAHCVANVNVRAVRVVLGA 57
Query: 94 INGIVXXXXXXXQRRDVLDV-RIHPN-YSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
N R V V RI N Y L N+I +L+L+ + + + LP
Sbjct: 58 HN-----LSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 152 NVTY-DSENCVITGWG 166
+ C+ GWG
Sbjct: 113 GRRLGNGVQCLAMGWG 128
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
C LI V+TAAHC N+ + G T RE Q V + + +
Sbjct: 26 CAGALIAKDWVLTAAHC--NLNKRSQVILGAHSIT-------REEPTKQIMLVKKEFPYP 76
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN-CIVTGWGKDKFGVEGRY 445
++ T D+ L+ L + ++ + P ++ C V GWG+ +
Sbjct: 77 CYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSAS--W 134
Query: 446 QSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQDACKGDGGGPLV 502
TL++V + ++ R VC + V ++ +CA GG +D+C GD G PL+
Sbjct: 135 SDTLREVNITIIDRKVCNDR-NHYNFNPVIGMN--MVCAGSLRGG--RDSCNGDSGSPLL 189
Query: 503 CQLKNERDRFTQVGIVSWGI--GCGSDT-PGVYVDV-RKFKKWILDNSHGKI 550
C+ G+ S+G+ CG PGVY+ + +K WI+ G +
Sbjct: 190 CE-------GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV 234
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG SLI ++AAHC Y V GE I+ + Q + + HPN++
Sbjct: 25 CGGSLINSQWVVSAAHC--YKSRIQVRLGEHNIDVL----EGNEQFINAAKIITHPNFNG 78
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
TL+N+I L+KLSS + + + LP +E C+I+GWG
Sbjct: 79 NTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWG 122
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 312 NKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEW--DTITNNRTDR 369
N I S+ CG +LI V++AAHC + I+VR GE D + N
Sbjct: 10 NSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNIDVLEGNE--- 62
Query: 370 EPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNC 429
Q ++I H NF T+ NDI LI L P + + + P S + C
Sbjct: 63 -----QFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-C 116
Query: 430 IVTGWGKDK 438
+++GWG K
Sbjct: 117 LISGWGNTK 125
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HPN++ TL+N+I L+KLSS + + + LP +E C+I+GWG
Sbjct: 73 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWG 122
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV-QYDVTYSVAAGEW 92
I GR P+M L +RN + CG L+ P LTAAHC+ Q + G
Sbjct: 2 IGGREVIPHSRPYMASL---QRNGSHL-CGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLH 57
Query: 93 FIN--GIVXXXXXXXQRRDVLDVRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLP 149
++ G+ Q HP Y LENN+ALL+L + I P+ LP
Sbjct: 58 TLDSPGLTFHIKAAIQ---------HPRYKPVPALENNLALLQLDGKVKPSRTIRPLALP 108
Query: 150 D-WNVTYDSENCVITGWGRDSADG 172
V C + GWG G
Sbjct: 109 SKRQVVAAGTRCSMAGWGLTHQGG 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREP-FPYQERTVSQIYIH 385
CG L+ P V+TAAHC+ R + + T P + + Q H
Sbjct: 26 CGGVLVHPKWVLTAAHCLAQ--------RMAQLRLVLGLHTLDSPGLTFHIKAAIQ---H 74
Query: 386 ENFE-AKTVFNDIALIILDFPF-PVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
++ + N++AL+ LD P + LA C + GWG G G
Sbjct: 75 PRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQG--G 132
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFIC-ASGGPNQDACKGDGGGPLV 502
R L++++++++ +C +R L S +C A+ +Q CKGD GGPLV
Sbjct: 133 RLSRVLRELDLQVLDTRMCNN----SRFWN-GSLSPSMVCLAADSKDQAPCKGDSGGPLV 187
Query: 503 C 503
C
Sbjct: 188 C 188
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 242 HPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD-WNVTYDSENCVITGWG 292
HP Y LENN+ALL+L + I P+ LP V C + GWG
Sbjct: 74 HPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWG 126
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 31/224 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
CG +LI ++TAAHCV++ V+ + G + + + E ER +S H
Sbjct: 30 CGGSLIDNKWILTAAHCVHD-AVSVVVYLG------SAVQYEGEAVVNSERIIS----HS 78
Query: 387 NFEAKTVFNDIALIILDFPFPVKN--HIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGR 444
F T ND+ALI + N I L ++++ V+GWG+
Sbjct: 79 MFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT--- 135
Query: 445 YQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQ 504
L+ ++ + C Q+ G+ + +S IC + C GD GGP V
Sbjct: 136 --VILQYTYNLVIDNDRCAQEYPP----GI--IVESTICGDTSDGKSPCFGDSGGPFVLS 187
Query: 505 LKNERDRFTQVGIVSW--GIGCGSDTPGVYVDVRKFKKWILDNS 546
KN +G+VS+ G GC S P + V + WI N+
Sbjct: 188 DKN-----LLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNT 226
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I+G Y G FP+ L ++ CG SLI LTAAHCV V+ V G
Sbjct: 2 INGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLG--- 58
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---D 150
+ + ++ H ++ +T N++AL+K+ ++++ D I PI LP +
Sbjct: 59 -SAVQYEGEAVVNSERIIS---HSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEE 113
Query: 151 WNVTYDSENCVITGWGRDSAD 171
N +++ ++GWG+ + D
Sbjct: 114 LNNKFENIWATVSGWGQSNTD 134
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREP-FPYQERTVSQIYIH 385
CG L+ P V+TAAHC+ R + + T P + + Q H
Sbjct: 26 CGGVLVHPKWVLTAAHCLAQ--------RMAQLRLVLGLHTLDSPGLTFHIKAAIQ---H 74
Query: 386 ENFEAKTVF-NDIALIILDFPF-PVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
++ ND+AL+ LD P + LA C + GWG G G
Sbjct: 75 PRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQG--G 132
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFIC-ASGGPNQDACKGDGGGPLV 502
R L++++++++ +C +R L S +C A+ +Q CKGD GGPLV
Sbjct: 133 RLSRVLRELDLQVLDTRMCNN----SRFWN-GSLSPSMVCLAADSKDQAPCKGDSGGPLV 187
Query: 503 C 503
C
Sbjct: 188 C 188
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 18/138 (13%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV-QYDVTYSVAAGEW 92
I GR P+M L +RN + CG L+ P LTAAHC+ Q + G
Sbjct: 2 IGGREVIPHSRPYMASL---QRNGSHL-CGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLH 57
Query: 93 FIN--GIVXXXXXXXQRRDVLDVRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLP 149
++ G+ Q HP Y LEN++ALL+L + I P+ LP
Sbjct: 58 TLDSPGLTFHIKAAIQ---------HPRYKPVPALENDLALLQLDGKVKPSRTIRPLALP 108
Query: 150 D-WNVTYDSENCVITGWG 166
V C + GWG
Sbjct: 109 SKRQVVAAGTRCSMAGWG 126
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 242 HPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPD-WNVTYDSENCVITGWG 292
HP Y LEN++ALL+L + I P+ LP V C + GWG
Sbjct: 74 HPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWG 126
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 36/221 (16%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
C LI + VMTAAHC I V G + T +Q+ V + + H
Sbjct: 30 CSGFLIRRNFVMTAAHCAGR----SITVLLGAHNKKVKEDT------WQKLEVEKQFPHP 79
Query: 387 NFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYD---DQNCIVTGWGKDKFGVEG 443
++ + V NDI L+ L + +G+ P SA+ + C GWG+ V
Sbjct: 80 KYDDRLVLNDIMLLKLKEKANLT--LGVGTLPISAKSNSIPPGRVCRAVGWGRT--NVNE 135
Query: 444 RYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQ--DACKGDGGGPL 501
TL++V+++++ C+ H G P + + KGD GGPL
Sbjct: 136 PPSDTLQEVKMRILDPQACKH---------FEDFHQEPQLCVGNPKKIRNVYKGDSGGPL 186
Query: 502 VCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
+C GI S+ + + P V+ + ++ WI
Sbjct: 187 LCA-------GIAQGIASYVLR-NAKPPSVFTRISHYRPWI 219
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXX 104
P+M L C LI N +TAAHC +T + A +
Sbjct: 13 PYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHCAGRSITVLLGAHNKKVK------EDT 66
Query: 105 XQRRDVLDVRIHPNYSTETLENNIALLKL--SSNIDFDDYIHPICLPDWNVTYDSENCVI 162
Q+ +V HP Y + N+I LLKL +N+ PI N C
Sbjct: 67 WQKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPISAKS-NSIPPGRVCRA 125
Query: 163 TGWGRDSAD 171
GWGR + +
Sbjct: 126 VGWGRTNVN 134
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 90/231 (38%), Gaps = 39/231 (16%)
Query: 320 VTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTV 379
V N CG TLI V+TA HC ++++ G + N+ FP ++
Sbjct: 18 VYANGSLCGGTLINQEWVLTARHCDRG----NMRIYLGMHNLKVLNKDALRRFPKEK--- 70
Query: 380 SQIYIHENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDK 438
Y N T+++ DI LI L+ P HI P++ C + GWG
Sbjct: 71 ---YFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSV-CRIMGWGTIT 126
Query: 439 FGVEGRYQSTLKKV----EVKLVPRNVCQQQLRKTRLGGVFKLHDSFICAS---GGPNQD 491
+TL V + ++ VCQ + L + +CA GG +D
Sbjct: 127 -----SPNATLPDVPHCANINILDYAVCQAAYKG--------LAATTLCAGILEGG--KD 171
Query: 492 ACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKWI 542
CKGD GGPL+C +F + V PG+Y V + WI
Sbjct: 172 TCKGDSGGPLICN-----GQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWI 217
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 91/254 (35%), Gaps = 47/254 (18%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRG 356
E E+P+++A+ T+ + C LI V+TAAHC +I+++
Sbjct: 6 ECNINEHPFLVALYTS--------ASSTIHCAGALINREWVLTAAHCDRR----NIRIKL 53
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
G N ++ P + + DI LI L P HI
Sbjct: 54 GMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLD-----KDIMLIRLRRPVTYSTHIAPVS 108
Query: 417 TPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL------RKTR 470
P+ + + C + GWGK Y + +V C+ +T
Sbjct: 109 LPSRSRGVGSR-CRIMGWGKISTTT---YPDVPHCTNIFIVKHKWCEPLYPWVPADSRTL 164
Query: 471 LGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-GCGSD-T 528
G+ K GG +D C GD GGPL+C + GIV+ G CG
Sbjct: 165 CAGILK---------GG--RDTCHGDSGGPLICNGEMH-------GIVAGGSEPCGQHLK 206
Query: 529 PGVYVDVRKFKKWI 542
P VY V + WI
Sbjct: 207 PAVYTKVFDYNNWI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G E P+++ L Y C +LI LTAAHC + ++ +
Sbjct: 2 VGGDECNINEHPFLVAL--YTSASSTIHCAGALINREWVLTAAHCDRRNIRIKLGMHSKN 59
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I + L+ + PN L+ +I L++L + + +I P+ LP +
Sbjct: 60 IRNEDEQIRVPRGKYFCLNTKF-PN----GLDKDIMLIRLRRPVTYSTHIAPVSLPSRSR 114
Query: 154 TYDSENCVITGWGRDS 169
S C I GWG+ S
Sbjct: 115 GVGSR-CRIMGWGKIS 129
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 113 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENC----VITGWG 166
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD +TGWG
Sbjct: 11 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 69
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 239 VRIHPNYS-TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENC----VITGWG 292
+ IHP Y+ E L+ +IAL+KL + F DYIHP+CLPD +TGWG
Sbjct: 11 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 69
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 92/227 (40%), Gaps = 39/227 (17%)
Query: 325 FQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYI 384
F C TLI V+TAAHC N T+ +++ G N + Q R + +I
Sbjct: 24 FFCSGTLINEEWVLTAAHCDN----TNFQMKLGVHSKKVLNEDE------QTRNPKEKFI 73
Query: 385 HENFEAKTVFN-DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG 443
N + V + DI LI LD HI + + S+ C + GWG ++
Sbjct: 74 CPNKKNDEVLDKDIMLIKLDSRVSNSEHI-VPLSLPSSPPSVGSVCHIMGWGSIT-PIKV 131
Query: 444 RYQSTLKKVEVKLVPRNVCQQQL------RKTRLGGVFKLHDSFICASGGPNQDACKGDG 497
Y + L+ VCQ +T G+ + GG +D C GD
Sbjct: 132 TYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILE---------GG--KDTCGGDS 180
Query: 498 GGPLVCQLKNERDRFTQVGIVSWGIG-CGSD-TPGVYVDVRKFKKWI 542
GGPL+C + + GIVS+G CG PGVY V + WI
Sbjct: 181 GGPLICNGQFQ-------GIVSFGAHPCGQGLKPGVYTKVFDYNHWI 220
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 48 LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQR 107
LV F+ N F C +LI LTAAHC + + + Q
Sbjct: 15 LVAFF---NSTGFFCSGTLINEEWVLTAAHCDNTNFQMKLGVHSKKV------LNEDEQT 65
Query: 108 RDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
R+ + I PN E L+ +I L+KL S + ++I P+ LP + S C I GWG
Sbjct: 66 RNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSV-CHIMGWG 124
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Query: 490 QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+D+C+GD GGP+VC + + GIVSWG GC + PGVY V + WI
Sbjct: 45 KDSCQGDSGGPVVCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 91
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Query: 490 QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+D+C+GD GGP+VC + + GIVSWG GC + PGVY V + WI
Sbjct: 45 KDSCQGDSGGPVVCNGQLQ-------GIVSWGYGCAQKNKPGVYTKVCNYVNWI 91
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 31/226 (13%)
Query: 322 ENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQ 381
N F CG TLI V+TAAHC +N + ++ G N ++ P + +
Sbjct: 21 SNGFLCGGTLINQDWVVTAAHCDSN----NFQLLFGVHSKKILNEDEQTRDPKE-----K 71
Query: 382 IYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGV 441
+ + V DI LI LD HI P+S C + GWGK
Sbjct: 72 FFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSV-CRIMGWGK-TIPT 129
Query: 442 EGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGG 498
+ Y + ++ VC+ ++ ++ +CA GG +D C D G
Sbjct: 130 KEIYPDVPHCANINILDHAVCRTAYSWRQVA------NTTLCAGILQGG--RDTCHFDSG 181
Query: 499 GPLVCQLKNERDRFTQVGIVSW-GIGCGS-DTPGVYVDVRKFKKWI 542
GPL+C + GIVSW G CG PGVY V + WI
Sbjct: 182 GPLICNGIFQ-------GIVSWGGHPCGQPGEPGVYTKVFDYLDWI 220
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHC--VQYDVTYSVAAGEWF 93
G E ++VLF N F CG +LI + +TAAHC + + + V + +
Sbjct: 4 GDECNINEHRSLVVLF----NSNGFLCGGTLINQDWVVTAAHCDSNNFQLLFGVHSKKIL 59
Query: 94 INGIVXXXXXXXQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
Q RD + PN + ++ +I L+KL S++ ++I P+ LP
Sbjct: 60 --------NEDEQTRDPKEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPLSLPSSP 111
Query: 153 VTYDSENCVITGWGR 167
+ S C I GWG+
Sbjct: 112 PSVGSV-CRIMGWGK 125
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 389 EAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEG-RYQS 447
+ K +D+ L+ L P + + + + P E C +GWG + G + +
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELG-STCEASGWGSIEPGPDDFEFPD 60
Query: 448 TLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPN-QDACKGDGGGPLVCQLK 506
++ V++ L+ C K+ +S +CA P +D C GD GGPL+C
Sbjct: 61 EIQCVQLTLLQNTFCADAHPD-------KVTESMLCAGYLPGGKDTCMGDSGGPLICNGM 113
Query: 507 NERDRFTQVGIVSWG-IGCGS-DTPGVYVDVRKFKKWILD 544
+ GI SWG CGS + P +Y + + WI D
Sbjct: 114 WQ-------GITSWGHTPCGSANKPSIYTKLIFYLDWIDD 146
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 55/324 (16%)
Query: 233 RRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPI----CLPD--WNVTYDSENC 286
R D LDV + + L N + + L+S D + ++ + CL D + + +S++
Sbjct: 152 REDYLDVYV---FGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQSL 208
Query: 287 VITG--WGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV 344
+ G W T + + PW I + +K C ++ + V+TAAHC
Sbjct: 209 SLCGMVWEHRKG-TDYHKQPWQAKISVIRPSKGHE------SCMGAVVSEYFVLTAAHCF 261
Query: 345 N-NIPVTDIKVR-GGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIIL 402
+ IKV GGE + P Y + I E ++ D+ALI L
Sbjct: 262 TVDDKEHSIKVSVGGEKRDLEIEVVLFHP-NYNINGKKEAGIPEFYDY-----DVALIKL 315
Query: 403 DFPFPVKNHIG---LACT----------PNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTL 449
I L CT P + + + + K F E + T
Sbjct: 316 KNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTR 375
Query: 450 KKVEVKLV-PRNVCQQQLRKTRLGGVFKLHD-------SFICASG-GPNQD--ACKGDGG 498
K+V +K + C++ + G K+ D F+C G P D C+GD G
Sbjct: 376 KEVYIKNGDKKGSCERDAQYA--PGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSG 433
Query: 499 GPLVCQLKNERDRFTQVGIVSWGI 522
GPL+ ++R RF QVG++SWG+
Sbjct: 434 GPLIV---HKRSRFIQVGVISWGV 454
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 37 RNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFING 96
+ T + + PW + + + + C +++ LTAAHC ++V E I
Sbjct: 219 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC------FTVDDKEHSIKV 272
Query: 97 IVXXXXXXXQRRD--VLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHP 145
V ++RD + V HPNY+ E + ++AL+KL + + + I P
Sbjct: 273 SVGG-----EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRP 327
Query: 146 ICLP 149
ICLP
Sbjct: 328 ICLP 331
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 39/253 (15%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRG 356
+T + PW +A+ T E CG ++ V+TAAHCV + I ++
Sbjct: 5 KTDIKQVPWTVAVRTYP-------GEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQ- 56
Query: 357 GEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLAC 416
E + + +P+ VS +Y+ + +T+ NDIA++ L P + GL
Sbjct: 57 YESTNLWEDPGKSDPY------VSHVYLS-FYRQETMENDIAILELSRPLKLD---GLKS 106
Query: 417 TPNSAEEYD-----DQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRL 471
P + + + +V+G+G + LK ++ +V + C +T+
Sbjct: 107 KPAKLPDIEFRPKTGSDVLVSGYGDGQ--TMDPKDHDLKSAQLTVVDLDEC-----RTKY 159
Query: 472 GGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGV 531
G +F F G + ++ GD G P V Q T VG+ ++ P V
Sbjct: 160 GPIFLSLQVFCAQKVGVSLES--GDAGDPTVQQ-------DTLVGVAAYFPKRPEGAPEV 210
Query: 532 YVDVRKFKKWILD 544
+ V + WI D
Sbjct: 211 FTKVGSYVSWIQD 223
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 29/144 (20%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV----------QYDVTY 85
G T + PW + + Y E CG +++ LTAAHCV QY+ T
Sbjct: 3 GEKTDIKQVPWTVAVRTYP-GEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYEST- 60
Query: 86 SVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPN-YSTETLENNIALLKLSSNIDFDDY-I 143
W G + D ++ + Y ET+EN+IA+L+LS + D
Sbjct: 61 ----NLWEDPG----------KSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKS 106
Query: 144 HPICLPDWNVTYDS-ENCVITGWG 166
P LPD + + +++G+G
Sbjct: 107 KPAKLPDIEFRPKTGSDVLVSGYG 130
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHC---VQYDVT-YSVAAGEWFINGI 97
G PW + L R ++F CG SL+ LTA C +T Y V G F N
Sbjct: 7 GNSPWTVSL--RNRQGQHF-CGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQN-- 61
Query: 98 VXXXXXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP-DWNVTYD 156
QR V + P+ S + LLKL ++ + + ICLP +W V
Sbjct: 62 PQHGEPSLQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICLPPEWYVVPP 115
Query: 157 SENCVITGWGRDSADG 172
C I GWG G
Sbjct: 116 GTKCEIAGWGETKGTG 131
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 43/250 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVN--NIPVTDIKVRGGE 358
G PW +++ N+ G CG +L+ ++TA C + ++P+T +V G
Sbjct: 7 GNSPWTVSLR----NRQGQ-----HFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLG- 56
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTP 418
T+ N EP Q V+++ + + + L+ L+ + + L C P
Sbjct: 57 --TLFQNPQHGEP-SLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLP 107
Query: 419 NSAEEY---DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVF 475
E Y C + GWG+ K G T+ V + NV Q + G
Sbjct: 108 --PEWYVVPPGTKCEIAGWGETK----GTGNDTVLNVALL----NVISNQECNIKHRG-- 155
Query: 476 KLHDSFICASG--GPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-SDTPGVY 532
++ +S +C G P AC+GD GGPL C N + GI+ C S P V+
Sbjct: 156 RVRESEMCTEGLLAP-VGACEGDYGGPLACFTHNS---WVLEGIIIPNRVCARSRWPAVF 211
Query: 533 VDVRKFKKWI 542
V F WI
Sbjct: 212 TRVSVFVDWI 221
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 252 NNIALLKLSSNIDFDDYIHPICLP-DWNVTYDSENCVITGWG 292
+ + LLKL ++ + + ICLP +W V C I GWG
Sbjct: 84 SQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWG 125
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 481 FICASG-GPNQD--ACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
F+C G P D C+GD GGPL+ ++R RF QVG++SWG+
Sbjct: 421 FLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGV 462
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 37 RNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFING 96
+ T + + PW + + + + C +++ LTAAHC ++V E I
Sbjct: 227 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC------FTVDDKEHSIKV 280
Query: 97 IVXXXXXXXQRRD--VLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHP 145
V ++RD + V HPNY+ E + ++AL+KL + + + I P
Sbjct: 281 SVGG-----EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRP 335
Query: 146 ICLP 149
ICLP
Sbjct: 336 ICLP 339
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 239 VRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHPICLP 275
V HPNY+ E + ++AL+KL + + + I PICLP
Sbjct: 294 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 339
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 481 FICASG-GPNQD--ACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
F+C G P D C+GD GGPL+ ++R RF QVG++SWG+
Sbjct: 214 FLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGV 255
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 37 RNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFING 96
+ T + + PW + + + + C +++ LTAAHC ++V E I
Sbjct: 20 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC------FTVDDKEHSIKV 73
Query: 97 IVXXXXXXXQRRD--VLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHP 145
V ++RD + V HPNY+ E + ++AL+KL + + + I P
Sbjct: 74 SVGG-----EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRP 128
Query: 146 ICLP 149
ICLP
Sbjct: 129 ICLP 132
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 239 VRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHPICLP 275
V HPNY+ E + ++AL+KL + + + I PICLP
Sbjct: 87 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 132
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 481 FICASG-GPNQD--ACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
F+C G P D C+GD GGPL+ ++R RF QVG++SWG+
Sbjct: 646 FLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGV 687
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 37 RNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFING 96
+ T + + PW + + + + C +++ LTAAHC ++V E I
Sbjct: 452 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC------FTVDDKEHSIKV 505
Query: 97 IVXXXXXXXQRRD--VLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHP 145
V ++RD + V HPNY+ E + ++AL+KL + + + I P
Sbjct: 506 SVGG-----EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRP 560
Query: 146 ICLP 149
ICLP
Sbjct: 561 ICLP 564
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 239 VRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHPICLP 275
V HPNY+ E + ++AL+KL + + + I PICLP
Sbjct: 519 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 564
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 481 FICASG-GPNQD--ACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
F+C G P D C+GD GGPL+ ++R RF QVG++SWG+
Sbjct: 665 FLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGV 706
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 37 RNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFING 96
+ T + + PW + + + + C +++ LTAAHC ++V E I
Sbjct: 471 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC------FTVDDKEHSIKV 524
Query: 97 IVXXXXXXXQRRD--VLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHP 145
V ++RD + V HPNY+ E + ++AL+KL + + + I P
Sbjct: 525 SVGG-----EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRP 579
Query: 146 ICLP 149
ICLP
Sbjct: 580 ICLP 583
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 239 VRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHPICLP 275
V HPNY+ E + ++AL+KL + + + I PICLP
Sbjct: 538 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 583
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 481 FICASG-GPNQD--ACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
F+C G P D C+GD GGPL+ ++R RF QVG++SWG+
Sbjct: 655 FLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGV 696
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 37 RNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFING 96
+ T + + PW + + + + C +++ LTAAHC ++V E I
Sbjct: 461 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC------FTVDDKEHSIKV 514
Query: 97 IVXXXXXXXQRRD--VLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHP 145
V ++RD + V HPNY+ E + ++AL+KL + + + I P
Sbjct: 515 SVGG-----EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRP 569
Query: 146 ICLP 149
ICLP
Sbjct: 570 ICLP 573
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 239 VRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHPICLP 275
V HPNY+ E + ++AL+KL + + + I PICLP
Sbjct: 528 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 573
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 23/181 (12%)
Query: 375 QERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCI--VT 432
QE + ++ H + TV DI LI L PV + C P +++Y + + V+
Sbjct: 170 QEVEIEKVIFHP--DNSTV--DIGLIKLKQKVPVNERVMPICLP--SKDYVNVGLVGYVS 223
Query: 433 GWGKDKFGVEGRYQSTLKKVEVKLVPRNVC----------QQQLRKTRLGGVFKLHDSFI 482
GWG++ + LK V + + + C +++ K+ +G L++
Sbjct: 224 GWGRN---ANLNFTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTF 280
Query: 483 CASGGPNQ-DACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFKKW 541
CA Q D C GD G K++ D + GI+S+ C + GVYV V W
Sbjct: 281 CAGLSKYQEDTCYGDAGSAFAVHDKDD-DTWYAAGILSFDKSCRTAEYGVYVRVTSILDW 339
Query: 542 I 542
I
Sbjct: 340 I 340
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXX 101
G FPW + + GA+LI LT A ++ A + I +
Sbjct: 112 GSFPWQAKMISHHN----LTSGATLINEQWLLTTAKNLRLGHKNDTKAKD--IAPTLRLY 165
Query: 102 XXXXQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV 161
Q ++ V HP+ ST +I L+KL + ++ + PICLP +
Sbjct: 166 VGKKQEVEIEKVIFHPDNSTV----DIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGY 221
Query: 162 ITGWGRDS 169
++GWGR++
Sbjct: 222 VSGWGRNA 229
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 232 QRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGW 291
Q ++ V HP+ ST +I L+KL + ++ + PICLP + ++GW
Sbjct: 170 QEVEIEKVIFHPDNSTV----DIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGW 225
Query: 292 GRDSAETFFGEYPWMM 307
GR++ F ++M
Sbjct: 226 GRNANLNFTEHLKYVM 241
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 116 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 166
HPN++ TL+N+I L+KLSS + + + LP +E C+I+GWG
Sbjct: 30 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWG 79
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 242 HPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG 292
HPN++ TL+N+I L+KLSS + + + LP +E C+I+GWG
Sbjct: 30 HPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWG 79
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 380 SQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDK 438
++I H NF T+ NDI LI L P + + + P S + C+++GWG K
Sbjct: 25 AKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTE-CLISGWGNTK 82
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 479 DSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
D F+C+ ++ CKG+ GG + + R RF QVG+VSWG+
Sbjct: 418 DQFLCSGTQEDESPCKGESGGAVFLE---RRFRFFQVGLVSWGL 458
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
C +LI LTAAHC + +S+ W +N + + + I P +
Sbjct: 249 CRGALISDQWVLTAAHCFRDGNDHSL----WRVN-VGDPKSQWGKEFLIEKAVISPGFDV 303
Query: 122 ETLEN---------NIALLKLSSNIDFDDYIHPICLP 149
+N +IALLKL+ + + PICLP
Sbjct: 304 FAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLP 340
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 479 DSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
D F+C+ ++ CKG+ GG + + R RF QVG+VSWG+
Sbjct: 426 DQFLCSGTQEDESPCKGESGGAVFLE---RRFRFFQVGLVSWGL 466
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
C +LI LTAAHC + +S+ W +N + + + I P +
Sbjct: 257 CRGALISDQWVLTAAHCFRDGNDHSL----WRVN-VGDPKSQWGKEFLIEKAVISPGFDV 311
Query: 122 ETLEN---------NIALLKLSSNIDFDDYIHPICLP 149
+N +IALLKL+ + + PICLP
Sbjct: 312 FAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLP 348
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQY 81
+ G + G PW ++LF +++ + CGASLI LTAAHC+ Y
Sbjct: 2 VEGSDAEIGMSPWQVMLF--RKSPQELLCGASLISDRWVLTAAHCLLY 47
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 20/193 (10%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG +I N LT A C +V + N + V +H Y
Sbjct: 79 CGGVIIRENFVLTTAKCSLLHRNITVKT---YFNRTSQDPLMI----KITHVHVHMRYDA 131
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGWGRDSADGGG--- 174
+ EN+++LL+L I P+C P+ ++ +++GW R+ D G
Sbjct: 132 DAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLT 191
Query: 175 --PLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLYDVTYSVAA----GEWFINGIVXXXX 228
P+ E+ V + + + ++ + SV G WF+ G++
Sbjct: 192 TRPVTLVEGEECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQP 251
Query: 229 XXXQRRDVLDVRI 241
Q VL ++
Sbjct: 252 VGGQAHMVLVTKV 264
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 302 EYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDT 361
+ PW + LTN KD CG +I + V+T A C ++ +I V+
Sbjct: 63 DLPWQVK-LTNSEGKDF--------CGGVIIRENFVLTTAKC--SLLHRNITVK------ 105
Query: 362 ITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS- 420
NRT ++P + ++ +++H ++A ND++L+ L++P CTP
Sbjct: 106 TYFNRTSQDPLMIK---ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKD 162
Query: 421 -AEEY--DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKT 469
AE +++GW ++ + ++L V LV C Q L T
Sbjct: 163 FAEHLLIPRTRGLLSGWARNGTDL----GNSLTTRPVTLVEGEECGQVLNVT 210
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW----NVTYDSENCVITGW 291
+ V +H Y + EN+++LL+L I P+C P+ ++ +++GW
Sbjct: 120 ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGW 179
Query: 292 GRDSAE 297
R+ +
Sbjct: 180 ARNGTD 185
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 20/193 (10%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVXXXXXXXQRRDVLDVRIHPNYST 121
CG +I N LT A C +V + N + V +H Y
Sbjct: 120 CGGVIIRENFVLTTAKCSLLHRNITVKT---YFNRTSQDPLMI----KITHVHVHMRYDA 172
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWN----VTYDSENCVITGWGRDSADGGG--- 174
+ EN+++LL+L I P+C P+ + + +++GW R+ D G
Sbjct: 173 DAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLT 232
Query: 175 --PLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLYDVTYSVAA----GEWFINGIVXXXX 228
P+ E+ V + + + ++ + SV G WF+ G++
Sbjct: 233 TRPVTLVEGEECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQP 292
Query: 229 XXXQRRDVLDVRI 241
Q VL ++
Sbjct: 293 VGGQAHMVLVTKV 305
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 302 EYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDT 361
+ PW + LTN KD CG +I + V+T A C ++ +I V+
Sbjct: 104 DLPWQVK-LTNSEGKDF--------CGGVIIRENFVLTTAKC--SLLHRNITVK------ 146
Query: 362 ITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS- 420
NRT ++P + ++ +++H ++A ND++L+ L++P CTP
Sbjct: 147 TYFNRTSQDPLMIK---ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKD 203
Query: 421 -AEEY--DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKT 469
AE +++GW ++ + ++L V LV C Q L T
Sbjct: 204 FAEHLLIPRTRGLLSGWARNGTDL----GNSLTTRPVTLVEGEECGQVLNVT 251
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN----VTYDSENCVITGW 291
+ V +H Y + EN+++LL+L I P+C P+ + + +++GW
Sbjct: 161 ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGW 220
Query: 292 GRDSAE 297
R+ +
Sbjct: 221 ARNGTD 226
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization,
Patterson Search, Structure Determination, Refinement,
Structure And Comparison With Its Components And With
The Bovine Trypsin- Pancreatic Trypsin Inhibitor
Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHC 78
I GR PW + +++Y F+CG L+ P LTAAHC
Sbjct: 2 IGGRECEKNSHPWQVAIYHYSS----FQCGGVLVNPKWVLTAAHC 42
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 303 YPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNN 346
+PW +AI + FQCG L+ P V+TAAHC N+
Sbjct: 12 HPWQVAIYH----------YSSFQCGGVLVNPKWVLTAAHCKND 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,686,906
Number of Sequences: 62578
Number of extensions: 778908
Number of successful extensions: 3926
Number of sequences better than 100.0: 354
Number of HSP's better than 100.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 1204
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)