RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10089
(559 letters)
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 327 bits (841), Expect = e-108
Identities = 118/261 (45%), Positives = 156/261 (59%), Gaps = 12/261 (4%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
ITG + AE +GE+PWM+A+L N E CG +LI P VV+T AHCVN+
Sbjct: 130 ITG-QTNEAE--YGEFPWMVAVLKA--NVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSY 184
Query: 348 P--VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFP 405
+ IK+R GEWDT T++E PYQER + Q+ IH NF KTV ND+AL++LD P
Sbjct: 185 QSNLDAIKIRAGEWDT----LTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRP 240
Query: 406 FPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
++IG C P ++ +D C +GWGK +FG RY + LKK+++ V R+ CQ
Sbjct: 241 LVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQAD 300
Query: 466 LRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG 525
LR TRLG F L +F+CA G +D C GDGG PL C R+ Q+GIV+WGIGCG
Sbjct: 301 LRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCG 360
Query: 526 -SDTPGVYVDVRKFKKWILDN 545
+ PGVY +V F+ WI
Sbjct: 361 DENVPGVYANVAHFRNWIDQE 381
Score = 154 bits (391), Expect = 4e-42
Identities = 67/239 (28%), Positives = 99/239 (41%), Gaps = 68/239 (28%)
Query: 39 TYFGEFPWMLVLFYYKRNM----EYFKCGASLIGPNIALTAAHCVQYDVT----YSVAAG 90
+GEFPWM+ + E CG SLI P++ LT AHCV + + AG
Sbjct: 137 AEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAG 196
Query: 91 EWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
EW E+E Q R + V IH N++ +T+ N++ALL L + D I ICLP
Sbjct: 197 EWDTL--TEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQ 254
Query: 151 WNVTY---------------------------------DSENC-------------VIT- 163
+ + D + C V+
Sbjct: 255 QSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQ 314
Query: 164 -----GW--GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
G G+D+ DGG PL CP +P+ + Q+GI AW + C ++PG+Y +V +
Sbjct: 315 TFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAH 373
Score = 102 bits (255), Expect = 1e-23
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ AGEW E+E Q R + V IH N++ +T+ N++ALL L + D I
Sbjct: 191 IKIRAGEWDTL--TEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIG 248
Query: 271 PICLPDWNVTYDSENCVITGWGRDSAETFFGEYP 304
ICLP + +DS C +GWG+ Y
Sbjct: 249 TICLPQQSQIFDSTECFASGWGKKE-FGSRHRYS 281
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 246 bits (630), Expect = 6e-78
Identities = 78/262 (29%), Positives = 118/262 (45%), Gaps = 27/262 (10%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD----I 352
+T E+PW I S F CG +LI ++TAAHCV +
Sbjct: 28 DTVPEEFPWTAMIG-----YKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALN 82
Query: 353 KVRGGEWDTITNNRTDRE-----PFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFP 405
KVR GEW+T T+ P + + + H ++ + ++DIALI L+
Sbjct: 83 KVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQ 142
Query: 406 FPVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
N+I C P EE Q V GWG+ + G+Y + +K+ V +V C +
Sbjct: 143 VEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTE---TGQYSTIKQKLAVPVVHAEQCAK 199
Query: 465 QLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGC 524
++ S +CA G +D+C GD GGPL+ + N +F G+VS+G C
Sbjct: 200 TFGAAG----VRVRSSQLCAGGEKAKDSCGGDSGGPLLAERAN--QQFFLEGLVSFGATC 253
Query: 525 GS-DTPGVYVDVRKFKKWILDN 545
G+ PG+Y V K++ WI N
Sbjct: 254 GTEGWPGIYTKVGKYRDWIEGN 275
Score = 145 bits (368), Expect = 6e-40
Identities = 60/239 (25%), Positives = 88/239 (36%), Gaps = 69/239 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYK-RNMEYFKCGASLIGPNIALTAAHCVQYDVT------YSVA 88
G +T EFPW ++ Y N E F CG SLI +TAAHCV V V
Sbjct: 26 GDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVR 85
Query: 89 AGEW-------FINGIVEEELEEEQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDF 139
GEW + ++ + + HP+Y ++ ++IAL++L+ ++F
Sbjct: 86 LGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEF 145
Query: 140 DDYIHPICLPDWNVT-YDSENCVITGWGR------------------------------- 167
+YI P+CLP N + + GWGR
Sbjct: 146 TNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKTFGAAG 205
Query: 168 ----------------DS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
DS D GGPL+ FF G+ ++ C T PG+Y
Sbjct: 206 VRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQ--QFFLEGLVSFGATCGTEGWPGIY 262
Score = 83.1 bits (206), Expect = 6e-18
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 211 YSVAAGEW-------FINGIVEEELEEEQRRDVLDVRIHPNY--STETLENNIALLKLSS 261
V GEW + ++ + + HP+Y ++ ++IAL++L+
Sbjct: 82 NKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNR 141
Query: 262 NIDFDDYIHPICLPDWNVT-YDSENCVITGWGR 293
++F +YI P+CLP N + + GWGR
Sbjct: 142 QVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGR 174
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 244 bits (624), Expect = 1e-75
Identities = 77/264 (29%), Positives = 116/264 (43%), Gaps = 31/264 (11%)
Query: 297 ETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRG 356
E PWM + + E+ F CG +I ++TAAHCV+ + ++R
Sbjct: 124 EVKLSSRPWMALLRYQQFG------ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRL 177
Query: 357 GEWDTITNNRTDREPF------PYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKN 410
GE T ++ P + + IHE ++A+ + +DIAL+ L+ P +
Sbjct: 178 GEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQK 237
Query: 411 HIGLACTPNSAE----EYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
HI C P + E VTGWG + G L + V L PR+ C Q
Sbjct: 238 HIKPICLPITDELKEKAEQISTYFVTGWGTTE---NGSSSDVLLQANVPLQPRSACSQAY 294
Query: 467 RKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLK---NERDRFTQVGIVSWG-I 522
R+ + S +C GG QD+CKGD GGPL + + + GIVS G +
Sbjct: 295 RRA-------VPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVV 347
Query: 523 GCGS-DTPGVYVDVRKFKKWILDN 545
CG PG+Y +V ++ +WI D
Sbjct: 348 TCGQISLPGLYTNVGEYVQWITDT 371
Score = 152 bits (386), Expect = 3e-41
Identities = 59/237 (24%), Positives = 81/237 (34%), Gaps = 65/237 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--YSVAAGEWF 93
G PWM +L Y + F CG ++I LTAAHCV Y + GE
Sbjct: 122 GYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHR 181
Query: 94 IN--------GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHP 145
I+ G ++ + IH Y + ++IALLKL+ ++ F +I P
Sbjct: 182 ISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKP 241
Query: 146 ICLPD----WNVTYDSENCVITGWGR---------------------------------- 167
ICLP +TGWG
Sbjct: 242 ICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQAYRRAVPLS 301
Query: 168 ----------DS--ADGGGPLVCPSK---EDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
DS D GGPL P++ E + GI + V C +PGLY
Sbjct: 302 QLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLY 358
Score = 86.1 bits (213), Expect = 3e-18
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 211 YSVAAGEWFIN--------GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSN 262
Y + GE I+ G ++ + IH Y + ++IALLKL+ +
Sbjct: 173 YEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRS 232
Query: 263 IDFDDYIHPICLPD----WNVTYDSENCVITGWGR 293
+ F +I PICLP +TGWG
Sbjct: 233 VPFQKHIKPICLPITDELKEKAEQISTYFVTGWGT 267
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 227 bits (580), Expect = 4e-71
Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 30/261 (11%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G ++ E+PW +++ + + CG ++I V+ AAHC+
Sbjct: 1 IVG-GIEARP---YEFPWQVSVRRK--------SSDSHFCGGSIINDRWVVCAAHCMQGE 48
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+ + GE D + Q V I+++EN++ T+ ND+++I
Sbjct: 49 APALVSLVVGEHD-----SSAAST-VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAIT 102
Query: 408 VKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR 467
++G C P+ A +Y + +GWG G + L+ V + + C
Sbjct: 103 FDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVC-CPAVLRYVTLNITTNAFCDAVYT 161
Query: 468 KTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGC 524
++D ICA +G ++D+C+GD GGPL + + F+ VGIVSWGIGC
Sbjct: 162 SDT------IYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGS--GIFSLVGIVSWGIGC 213
Query: 525 GSDTPGVYVDVRKFKKWILDN 545
S PGVY V WI D
Sbjct: 214 ASGYPGVYSRVGFHAGWITDT 234
Score = 152 bits (387), Expect = 4e-43
Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 63/231 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV--TYSVAAGEWF 93
G EFPW + + ++ + CG S+I + AAHC+Q + S+ GE
Sbjct: 4 GIEARPYEFPWQVSVRR--KSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHD 61
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ Q DV + ++ NY TLEN+++++K + I FD + PIC PD
Sbjct: 62 SSAASTVR----QTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAN 117
Query: 154 TYDSENCVITGWGRDSADG----------------------------------------- 172
Y +GWG ++ G
Sbjct: 118 DYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTG 177
Query: 173 -----------GGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY-DVTY 211
GGPL F VGI +W + C PG+Y V +
Sbjct: 178 MTDRDSCQGDSGGPLSVKDGSG--IFSLVGIVSWGIGCASGYPGVYSRVGF 226
Score = 95.0 bits (237), Expect = 3e-22
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
S+ GE + Q DV + ++ NY TLEN+++++K + I FD +
Sbjct: 53 VSLVVGEHDSSAASTVR----QTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVG 108
Query: 271 PICLPDWNVTYDSENCVITGWGR 293
PIC PD Y +GWG
Sbjct: 109 PICAPDPANDYVYRKSQCSGWGT 131
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 219 bits (560), Expect = 3e-68
Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 39/262 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--N 345
I G G D+ E G +PW++ + + + CGA+L+ +++AAHCV
Sbjct: 1 IVG-GSDAKE---GAWPWVVGLYYD----------DRLLCGASLVSSDWLVSAAHCVYGR 46
Query: 346 NIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFP 405
N+ + G +++ R + +I I+ ++ + NDIA++ L+F
Sbjct: 47 NLEPSKWTAILGLHM-----KSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFK 101
Query: 406 FPVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
++I P + +NC + GWG + G L++ +V L+ CQQ
Sbjct: 102 VNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQ--GTTADILQEADVPLLSNERCQQ 159
Query: 465 QLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
Q+ + + ++ ICA GG D+C+GD GGPL+CQ E +R+ G+ S+G
Sbjct: 160 QMPEYN------ITENMICAGYEEGG--IDSCQGDSGGPLMCQ---ENNRWFLAGVTSFG 208
Query: 522 IGCGS-DTPGVYVDVRKFKKWI 542
C + PGVY V +F +WI
Sbjct: 209 YECALPNRPGVYARVSRFTEWI 230
Score = 143 bits (362), Expect = 2e-39
Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 66/232 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT----YSVAAGE 91
G + G +PW++ L+Y R CGASL+ + ++AAHCV ++ G
Sbjct: 4 GSDAKEGAWPWVVGLYYDDR----LLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGL 59
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ + + R + ++ I+P+Y+ +N+IA++ L +++ DYI PI LP+
Sbjct: 60 HMKSNLTSPQ---TVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEE 116
Query: 152 NVTYDS-ENCVITGWGRDSADG-------------------------------------- 172
N + NC I GWG G
Sbjct: 117 NQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYE 176
Query: 173 -----------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGPL+C +F G+ ++ C P+ PG+Y V+
Sbjct: 177 EGGIDSCQGDSGGPLMCQENN---RWFLAGVTSFGYECALPNRPGVYARVSR 225
Score = 89.6 bits (223), Expect = 2e-20
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
++ G + + + R + ++ I+P+Y+ +N+IA++ L +++ DYI
Sbjct: 53 WTAILGLHMKSNLTSPQ---TVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQ 109
Query: 271 PICLPDWNVTYDS-ENCVITGWGR 293
PI LP+ N + NC I GWG
Sbjct: 110 PISLPEENQVFPPGRNCSIAGWGT 133
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 217 bits (554), Expect = 4e-67
Identities = 76/267 (28%), Positives = 112/267 (41%), Gaps = 38/267 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G+ + GE PW + +L N CG TLI V++AAHC + I
Sbjct: 1 IVG-GKVCPK---GECPWQVLLLVN----------GAQLCGGTLINTIWVVSAAHCFDKI 46
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
++ GE D ++ + Q R V+Q+ I + T +DIAL+ L P
Sbjct: 47 KNWRNLIAVLGEHD-----LSEHDG-DEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPV 100
Query: 407 PVKNHIGLACTPNSAEE----YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
+ +H+ C P + +V+GWG+ G L + V + C
Sbjct: 101 VLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDR--GATALELMVLNVPRLMTQDC 158
Query: 463 QQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVS 519
QQ RK G + + CA G +D+CKGD GGP + R + GIVS
Sbjct: 159 LQQSRKV--GDSPNITEYMFCAGYSDGS--KDSCKGDSGGPHAT---HYRGTWYLTGIVS 211
Query: 520 WGIGCG-SDTPGVYVDVRKFKKWILDN 545
WG GC GVY V ++ +W+
Sbjct: 212 WGQGCATVGHFGVYTRVSQYIEWLQKL 238
Score = 139 bits (352), Expect = 6e-38
Identities = 51/233 (21%), Positives = 78/233 (33%), Gaps = 72/233 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G+ GE PW ++L CG +LI ++AAHC GE
Sbjct: 4 GKVCPKGECPWQVLLLVNG----AQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEH 59
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ E +EQ R V V I Y T ++IALL+L + D++ P+CLP+
Sbjct: 60 DLS----EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERT 115
Query: 153 VT----YDSENCVITGW------------------------------------------- 165
+ +++GW
Sbjct: 116 FSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYM 175
Query: 166 --------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
+DS D GGP + T++ GI +W C T G+Y
Sbjct: 176 FCAGYSDGSKDSCKGDSGGPHATHYRG---TWYLTGIVSWGQGCATVGHFGVY 225
Score = 89.6 bits (223), Expect = 3e-20
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
GE ++ E +EQ R V V I Y T ++IALL+L + D++
Sbjct: 52 LIAVLGEHDLS----EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVV 107
Query: 271 PICLPDWNVT----YDSENCVITGWGR 293
P+CLP+ + +++GWG+
Sbjct: 108 PLCLPERTFSERTLAFVRFSLVSGWGQ 134
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 214 bits (547), Expect = 3e-66
Identities = 83/264 (31%), Positives = 121/264 (45%), Gaps = 36/264 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G +S+ GE+PW +++ T CG +LI V+TAAHC + +
Sbjct: 1 IVG-GTESSW---GEWPWQVSLQVKL-------TAQRHLCGGSLIGHQWVLTAAHCFDGL 49
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
P ++ G + +D + +I IH+N++ +DIALI L P
Sbjct: 50 PLQDVWRIYSGILE-----LSDITK-DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPL 103
Query: 407 PVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
P+ + NC VTGWG K G Q+ L+KV + LV CQ++
Sbjct: 104 EYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEK--GEIQNILQKVNIPLVTNEECQKR 161
Query: 466 LRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
+ + + +CA GG +DACKGD GGPLVC+ + VGI SWG
Sbjct: 162 YQDYK------ITQRMVCAGYKEGG--KDACKGDSGGPLVCK---HNGMWRLVGITSWGE 210
Query: 523 GCGS-DTPGVYVDVRKFKKWILDN 545
GC + PGVY V ++ WIL+
Sbjct: 211 GCARREQPGVYTKVAEYMDWILEK 234
Score = 142 bits (360), Expect = 4e-39
Identities = 58/231 (25%), Positives = 88/231 (38%), Gaps = 63/231 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G + +GE+PW V K + CG SLIG LTAAHC + + +G
Sbjct: 4 GTESSWGEWPWQ-VSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGIL 62
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ I ++ + ++ IH NY ++IAL+KL + +++ ++ PI LP
Sbjct: 63 ELSDITKDT----PFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKG 118
Query: 153 VT-YDSENCVITGWG--------------------------------------------- 166
T NC +TGWG
Sbjct: 119 DTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKE 178
Query: 167 --RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
+D+ D GGPLVC + VGI +W C + PG+Y V
Sbjct: 179 GGKDACKGDSGGPLVCKHNG---MWRLVGITSWGEGCARREQPGVYTKVAE 226
Score = 87.7 bits (218), Expect = 9e-20
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ + +G ++ I ++ + ++ IH NY ++IAL+KL + +++ ++
Sbjct: 55 WRIYSGILELSDITKDT----PFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQK 110
Query: 271 PICLPDWNVT-YDSENCVITGWGR 293
PI LP T NC +TGWG
Sbjct: 111 PISLPSKGDTSTIYTNCWVTGWGF 134
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 214 bits (546), Expect = 1e-65
Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 25/265 (9%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G+D+A G +PWM+++ + + CG +L+ ++TAAHC
Sbjct: 1 IIG-GQDAAH---GAWPWMVSLQIFTYHNNR----RYHVCGGSLLNSQWLLTAAHCFRIK 52
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
VTD ++ G + +P P QER V +I IHE + A + NDIAL+ + P
Sbjct: 53 KKVTDWRLIFGAKEVEWGTNKPVKP-PLQERYVEKIIIHEKYSASSEANDIALMKITPPV 111
Query: 407 PVKNHIGLACTPNSAEE--YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ IG C P Q C V GWG + R L++ V L+ +C
Sbjct: 112 TCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENAR-RTSPMLQEARVDLIDLGLCNS 170
Query: 465 QLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
G ++ + +CA G D C+GD GGPL+C+ + + + VGI SWG
Sbjct: 171 ---TRWYNG--RIRSTNVCAGYPEGK--IDTCQGDSGGPLMCK-DSAENSYVVVGITSWG 222
Query: 522 IGCG-SDTPGVYVDVRKFKKWILDN 545
+GC + PGVY + WI
Sbjct: 223 VGCARAKRPGVYTSTWSYLNWIASK 247
Score = 140 bits (354), Expect = 7e-38
Identities = 58/239 (24%), Positives = 88/239 (36%), Gaps = 62/239 (25%)
Query: 34 ISGRNTYFGEFPWM--LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVA 88
I G++ G +PWM L +F Y N Y CG SL+ LTAAHC + + +
Sbjct: 2 IGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLI 61
Query: 89 AGEWFINGIVEEELE-EEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPIC 147
G + + ++ Q R V + IH YS + N+IAL+K++ + +I P C
Sbjct: 62 FGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGC 121
Query: 148 LPDWNVT--YDSENCVITGW---------------------------------------- 165
LP + + C + GW
Sbjct: 122 LPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRST 181
Query: 166 ---------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
D+ D GGPL+C + ++ VGI +W V C PG+Y
Sbjct: 182 NVCAGYPEGKIDTCQGDSGGPLMCKDSAE-NSYVVVGITSWGVGCARAKRPGVYTSTWS 239
Score = 90.5 bits (225), Expect = 2e-20
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 211 YSVAAGEWFINGIVEEELE-EEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ + G + + ++ Q R V + IH YS + N+IAL+K++ + +I
Sbjct: 58 WRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFI 117
Query: 270 HPICLPDWNVT--YDSENCVITGWGR 293
P CLP + + C + GWG
Sbjct: 118 GPGCLPQFRAGPPRVPQTCWVAGWGF 143
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 212 bits (541), Expect = 2e-65
Identities = 79/264 (29%), Positives = 121/264 (45%), Gaps = 36/264 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G S GE+PW + + T + CG ++I ++TAAHC +
Sbjct: 1 IVG-GTASVR---GEWPWQVTLHTTSPTQ-------RHLCGGSIIGNQWILTAAHCFYGV 49
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
++V G N+++ + V +I IH+ ++ DIAL+ L+
Sbjct: 50 ESPKILRVYSGIL-----NQSEIKE-DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTV 103
Query: 407 PVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
+ P+ E +C VTGWG K + Q+TL+K ++ LV CQ++
Sbjct: 104 NYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKR 161
Query: 466 LRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
R + + ICA GG +DACKGD GGPL C+ + + VGI SWG
Sbjct: 162 YRGHK------ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGE 210
Query: 523 GCGS-DTPGVYVDVRKFKKWILDN 545
GC + PGVY +V ++ WIL+
Sbjct: 211 GCAQRERPGVYTNVVEYVDWILEK 234
Score = 139 bits (352), Expect = 4e-38
Identities = 56/231 (24%), Positives = 79/231 (34%), Gaps = 63/231 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G + GE+PW V + + CG S+IG LTAAHC + V +G
Sbjct: 4 GTASVRGEWPWQ-VTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGIL 62
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ I E+ V ++ IH Y +IALLKL + +++ D PI LP
Sbjct: 63 NQSEI----KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKG 118
Query: 153 VTY-DSENCVITGWGRDSADG--------------------------------------- 172
+C +TGWG
Sbjct: 119 ERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Query: 173 ----------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGPL C E + VGI +W C + PG+Y +V
Sbjct: 179 GGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVYTNVVE 226
Score = 86.9 bits (216), Expect = 1e-19
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
V +G + I E+ V ++ IH Y +IALLKL + +++ D
Sbjct: 54 ILRVYSGILNQSEI----KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ 109
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
PI LP +C +TGWG
Sbjct: 110 RPISLPSKGERNVIYTDCWVTGWGY 134
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 211 bits (540), Expect = 4e-65
Identities = 75/266 (28%), Positives = 111/266 (41%), Gaps = 43/266 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G++ + GE PW ++ + N CG T++ ++TAAHC+
Sbjct: 1 IVG-GQECKD---GECPWQALLINEE---------NEGFCGGTILSEFYILTAAHCLYQ- 46
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
KVR G+ N E V + H F +T DIA++ L P
Sbjct: 47 -AKRFKVRVGD-----RNTEQEEG-GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPIT 99
Query: 408 VKNHIGLACTPN----SAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQ 463
+ ++ AC P + + IV+G+G+ G + LK +EV V RN C+
Sbjct: 100 FRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK--GEQSTRLKMLEVPYVDRNSCK 157
Query: 464 QQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSW 520
F + + CA + +DAC+GD GGP V +D + GIVSW
Sbjct: 158 LSSS-------FIITQNMFCAGYDTKQ--EDACQGDSGGPHVT---RFKDTYFVTGIVSW 205
Query: 521 GIGCG-SDTPGVYVDVRKFKKWILDN 545
G GC G+Y V F KWI +
Sbjct: 206 GEGCARKGKYGIYTKVTAFLKWIDRS 231
Score = 146 bits (371), Expect = 1e-40
Identities = 49/225 (21%), Positives = 78/225 (34%), Gaps = 63/225 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ GE PW +L + CG +++ LTAAHC+ + V G+
Sbjct: 4 GQECKDGECPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTE 60
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT- 154
+E E +V V H ++ ET + +IA+L+L + I F + P CLP+ +
Sbjct: 61 ----QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 155 ---YDSENCVITGWGRDSADG--------------------------------------- 172
+ +++G+GR G
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 173 ---------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
GGP V T+F GI +W C G+Y
Sbjct: 177 QEDACQGDSGGPHVT---RFKDTYFVTGIVSWGEGCARKGKYGIY 218
Score = 86.9 bits (216), Expect = 2e-19
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 231 EQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT----YDSENC 286
E +V V H ++ ET + +IA+L+L + I F + P CLP+ + +
Sbjct: 66 EAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTG 125
Query: 287 VITGWGR 293
+++G+GR
Sbjct: 126 IVSGFGR 132
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 210 bits (538), Expect = 4e-65
Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 52/265 (19%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G +A+ GE+P+M+ + CG L +V+TAAHCV+
Sbjct: 1 VVG-GTRAAQ---GEFPFMVRL--------------SMGCGGALYAQDIVLTAAHCVSGS 42
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFP- 405
T I GG D + + +++ F +T D ALI L P
Sbjct: 43 GNNTSITATGGV--------VDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI 94
Query: 406 -FPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
P + Y+ V GWG ++ G G Q L K V V C+
Sbjct: 95 NQPT-------LKIATTTAYNQGTFTVAGWGANREG--GSQQRYLLKANVPFVSDAACRS 145
Query: 465 QLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
+ + ICA + +D C+GD GGP+ + + D + QVGIVSWG
Sbjct: 146 SSSFIL------VANEMICAGYDTKQ--EDTCQGDSGGPMFRK--DNADEWVQVGIVSWG 195
Query: 522 IGCG-SDTPGVYVDVRKFKKWILDN 545
GC GVY +V F I
Sbjct: 196 EGCARKGKYGVYTEVSTFASAIASA 220
Score = 129 bits (327), Expect = 1e-34
Identities = 46/225 (20%), Positives = 66/225 (29%), Gaps = 74/225 (32%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G GEFP+M+ L CG +L +I LTAAHCV + G
Sbjct: 4 GTRAAQGEFPFMVRLSMG--------CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV 55
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ + V P ++ ET + AL+KL+ I+ P
Sbjct: 56 DLQS------SSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----PTLKIATT 104
Query: 153 VTYDSENCVITGWGRDSADG---------------------------------------- 172
Y+ + GWG + G
Sbjct: 105 TAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTK 164
Query: 173 ---------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
GGP+ D + QVGI +W C G+Y
Sbjct: 165 QEDTCQGDSGGPMFRKDNAD--EWVQVGIVSWGEGCARKGKYGVY 207
Score = 75.7 bits (187), Expect = 8e-16
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 222 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 281
G+V+ + + V P ++ ET + AL+KL+ I+ P Y
Sbjct: 53 GVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----PTLKIATTTAY 107
Query: 282 DSENCVITGWGR 293
+ + GWG
Sbjct: 108 NQGTFTVAGWGA 119
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 210 bits (538), Expect = 7e-65
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 42/269 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G D+ E GE+PW +++ CGA+LI P+ +++AAHC +
Sbjct: 1 VVG-GTDADE---GEWPWQVSLHALG---------QGHICGASLISPNWLVSAAHCYIDD 47
Query: 348 P------VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALII 401
T G +++ R QER + +I H F T DIAL+
Sbjct: 48 RGFRYSDPTQWTAFLGLH-----DQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 402 LDFPFPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRN 460
L+ P + + P+++ + + VTGWG ++G G L+K E++++ +
Sbjct: 103 LEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYG--GTGALILQKGEIRVINQT 160
Query: 461 VCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGI 517
C+ L + ++ +C SGG D+C+GD GGPL R Q G+
Sbjct: 161 TCENLLPQ-------QITPRMMCVGFLSGG--VDSCQGDSGGPLSSV--EADGRIFQAGV 209
Query: 518 VSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
VSWG GC + PGVY + F+ WI +N
Sbjct: 210 VSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 142 bits (360), Expect = 4e-39
Identities = 54/230 (23%), Positives = 82/230 (35%), Gaps = 66/230 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--------YSV 87
G + GE+PW + L + CGASLI PN ++AAHC D ++
Sbjct: 4 GTDADEGEWPWQVSLHALGQ---GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 88 AAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPIC 147
G + Q R + + HP ++ T + +IALL+L ++ + PI
Sbjct: 61 FLGLHDQSQRSAPG---VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPIS 117
Query: 148 LPDWNVTY-DSENCVITGWG---------------------------------------- 166
LPD + + + +TGWG
Sbjct: 118 LPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCV 177
Query: 167 ------RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
DS D GGPL + FQ G+ +W C + PG+Y
Sbjct: 178 GFLSGGVDSCQGDSGGPLSSVEADG--RIFQAGVVSWGDGCAQRNKPGVY 225
Score = 90.0 bits (224), Expect = 2e-20
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
++ G + Q R + + HP ++ T + +IALL+L ++ +
Sbjct: 58 WTAFLGLHDQSQRSAPG---VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 114
Query: 271 PICLPDWNVTY-DSENCVITGWGR 293
PI LPD + + + +TGWG
Sbjct: 115 PISLPDASHVFPAGKAIWVTGWGH 138
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 211 bits (538), Expect = 1e-64
Identities = 82/278 (29%), Positives = 113/278 (40%), Gaps = 45/278 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--- 344
I G D+ G PW + + + CGA+LI V+TAAHC+
Sbjct: 1 IVE-GSDAEI---GMSPWQVMLFRKSPQE--------LLCGASLISDRWVLTAAHCLLYP 48
Query: 345 ---NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-NDIALI 400
N D+ VR G+ RT E + + +IYIH + + DIAL+
Sbjct: 49 PWDKNFTENDLLVRIGKHS-----RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 103
Query: 401 ILDFPFPVKNHIGLACTPNSAEE----YDDQNCIVTGWGK----DKFGVEGRYQSTLKKV 452
L P ++I C P+ VTGWG V S L+ V
Sbjct: 104 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV 163
Query: 453 EVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA----SGGPNQDACKGDGGGPLVCQLKNE 508
+ +V R VC+ R ++ D+ CA G DAC+GD GGP V +
Sbjct: 164 NLPIVERPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPF 215
Query: 509 RDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILDN 545
+R+ Q+GIVSWG GC G Y V + KKWI
Sbjct: 216 NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV 253
Score = 133 bits (336), Expect = 1e-35
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--------YSV 87
G + G PW ++LF ++ + CGASLI LTAAHC+ Y V
Sbjct: 4 GSDAEIGMSPWQVMLFR--KSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 61
Query: 88 AAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYIHPI 146
G+ E E+ + + IHP Y+ E L+ +IAL+KL + F DYIHP+
Sbjct: 62 RIGKHSRT---RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 147 CLPDWNVT----YDSENCVITGWGR 167
CLPD +TGWG
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGN 143
Score = 86.2 bits (214), Expect = 4e-19
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYI 269
V G+ E E+ + + IHP Y+ E L+ +IAL+KL + F DYI
Sbjct: 59 LLVRIGKHSRT---RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYI 115
Query: 270 HPICLPDWNVT----YDSENCVITGWGR 293
HP+CLPD +TGWG
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGN 143
Score = 38.1 bits (89), Expect = 0.005
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 166 GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTYSVAAGEWFIN 221
D+ D GGP V S + ++Q+GI +W C G Y V +W I
Sbjct: 197 RGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK---KW-IQ 251
Query: 222 GIVEEE 227
++++
Sbjct: 252 KVIDQF 257
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 209 bits (534), Expect = 2e-64
Identities = 62/270 (22%), Positives = 102/270 (37%), Gaps = 45/270 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--- 344
I G G+ + G +PW + + + G L+ ++TAAH +
Sbjct: 1 IIG-GQKAKM---GNFPWQVFTNIH------------GRGGGALLGDRWILTAAHTLYPK 44
Query: 345 --NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF---EAKTVFNDIAL 399
+ V G + E + ++ +H ++ E+ DIAL
Sbjct: 45 EHEAQSNASLDVFLGHTNV-------EELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 97
Query: 400 IILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVP 458
+ L+ + ++ C P++ YD V+G+G +E + L+ V + +
Sbjct: 98 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVAN 153
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQV 515
C+ LR + + CA S QDAC+GD GG + DR+
Sbjct: 154 PQACENWLRGK--NRMDVFSQNMFCAGHPSLK--QDACQGDSGGVFAVRD-PNTDRWVAT 208
Query: 516 GIVSWGIGCGSDTPGVYVDVRKFKKWILDN 545
GIVSWGIGC G Y V + WI
Sbjct: 209 GIVSWGIGCS-RGYGFYTKVLNYVDWIKKE 237
Score = 128 bits (325), Expect = 3e-34
Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 72/251 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G FPW + + R G +L+G LTAAH + + + +
Sbjct: 4 GQKAKMGNFPWQVFTNIHGR------GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVF 57
Query: 96 -GIVE-EELEEEQRRDVLDVRIHPNYS---TETLENNIALLKLSSNIDFDDYIHPICLPD 150
G EEL + + V +HP+Y + E +IALL+L +++ + PICLPD
Sbjct: 58 LGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPD 117
Query: 151 WNVTYDS-ENCVITGWG------------------------------------------- 166
+ YD ++G+G
Sbjct: 118 NDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCA 177
Query: 167 ------RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTYSVAAG 216
+D+ D GG + GI +W + C G Y V V
Sbjct: 178 GHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGCSRG--YGFYTKVLNYV--- 231
Query: 217 EWFINGIVEEE 227
+W I +EEE
Sbjct: 232 DW-IKKEMEEE 241
Score = 84.2 bits (209), Expect = 1e-18
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 198 VCTPDMPGLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYS---TETLENNI 254
+ + + + V G + EL + + V +HP+Y + E +I
Sbjct: 41 LYPKEHEAQSNASLDVFLGHTNVE-----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDI 95
Query: 255 ALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVITGWGR 293
ALL+L +++ + PICLPD + YD ++G+G
Sbjct: 96 ALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV 135
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 209 bits (534), Expect = 2e-64
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 42/269 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--N 345
I G G+ + G++PW + IL L+ + V+TAAH V
Sbjct: 1 IYG-GQKAKP---GDFPWQVLIL------------GGTTAAGALLYDNWVLTAAHAVYEQ 44
Query: 346 NIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-NDIALIILDF 404
+ + +R G ++ + Y + ++IHE + F NDIALI L+
Sbjct: 45 KHDASALDIRMGTLKRLSPH--------YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNN 96
Query: 405 PFPVKNHIGLACTPNSAEEY---DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNV 461
+ ++I C P E D +GWG + G L V++ +V
Sbjct: 97 KVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ---RGFLARNLMYVDIPIVDHQK 153
Query: 462 CQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIV 518
C K + + +CA SGG +D+C+GD GG LV E +R+ GIV
Sbjct: 154 CTAAYEKPPYPR-GSVTANMLCAGLESGG--KDSCRGDSGGALVFLDS-ETERWFVGGIV 209
Query: 519 SWG-IGCGS-DTPGVYVDVRKFKKWILDN 545
SWG + CG GVY V + WI +
Sbjct: 210 SWGSMNCGEAGQYGVYTKVINYIPWIENI 238
Score = 130 bits (330), Expect = 5e-35
Identities = 51/232 (21%), Positives = 77/232 (33%), Gaps = 70/232 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G+FPW +++ +L+ N LTAAH V A I
Sbjct: 4 GQKAKPGDFPWQVLILGG------TTAAGALLYDNWVLTAAHAVY---EQKHDASALDIR 54
Query: 96 -GIVEEELEEEQRRDVLDVRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLPDWNV 153
G ++ + V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 55 MGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEA 114
Query: 154 TY---DSENCVITGW--------------------------------------------- 165
+ +GW
Sbjct: 115 ESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLC 174
Query: 166 ------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
G+DS D GG LV E +F GI +W S+ C G+Y
Sbjct: 175 AGLESGGKDSCRGDSGGALVFLDSET-ERWFVGGIVSWGSMNCGEAGQYGVY 225
Score = 81.9 bits (203), Expect = 1e-17
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 222 GIVEEELEEEQRRDVLDVRIHPNYSTET-LENNIALLKLSSNIDFDDYIHPICLPDWNVT 280
G ++ + V IH Y+ + +N+IAL+KL++ + + I PICLP
Sbjct: 56 GTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE 115
Query: 281 Y---DSENCVITGWGR 293
+ +GWG
Sbjct: 116 SFMRTDDIGTASGWGL 131
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 208 bits (532), Expect = 4e-64
Identities = 82/266 (30%), Positives = 118/266 (44%), Gaps = 37/266 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G D+ GE+P+ ++ I + CGA++ + +TA HCV
Sbjct: 1 IVG-GTDATL---GEFPYQLSFQETFIG------FSFHFCGASIYNENYAITAGHCVYGD 50
Query: 348 PVTD---IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDF 404
+ +++ GE D N + Q TVS+I +HENF+ + NDI+L+ L
Sbjct: 51 DYENPSGLQIVAGELDMSVNEGS------EQIITVSKIILHENFDYNLLDNDISLLKLSG 104
Query: 405 PFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+++ P + IVTGWG G G L+KV V LV C+
Sbjct: 105 SLTFNDNVAPIALPEQGHTA-TGDVIVTGWGTTSEG--GNTPDVLQKVTVPLVSDEDCRA 161
Query: 465 QLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
G ++ DS ICA GG +D+C+GD GGPL ++ GIVSWG
Sbjct: 162 DY------GADEILDSMICAGVPEGG--KDSCQGDSGGPLAA---SDTGSTYLAGIVSWG 210
Query: 522 IGCGS-DTPGVYVDVRKFKKWILDNS 546
GC PGVY +V WI N+
Sbjct: 211 YGCARPGYPGVYTEVSYHVDWIKANA 236
Score = 145 bits (368), Expect = 2e-40
Identities = 62/232 (26%), Positives = 90/232 (38%), Gaps = 64/232 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV-----TYSVAAG 90
G + GEFP+ L + CGAS+ N A+TA HCV D + AG
Sbjct: 4 GTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAG 63
Query: 91 EWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
E ++ E Q V + +H N+ L+N+I+LLKLS ++ F+D + PI LP+
Sbjct: 64 ELDMSVNEGSE----QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPE 119
Query: 151 WNVTYDSENCVITGWGRDSADG-------------------------------------- 172
T + ++TGWG S G
Sbjct: 120 QGHTATG-DVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVP 178
Query: 173 -----------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGPL D + + GI +W C P PG+Y +V+Y
Sbjct: 179 EGGKDSCQGDSGGPLAA---SDTGSTYLAGIVSWGYGCARPGYPGVYTEVSY 227
Score = 90.0 bits (224), Expect = 1e-20
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 199 CTPDMPGLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLK 258
C + AGE ++ E Q V + +H N+ L+N+I+LLK
Sbjct: 46 CVYGDDYENPSGLQIVAGELDMSVNEGSE----QIITVSKIILHENFDYNLLDNDISLLK 101
Query: 259 LSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGR 293
LS ++ F+D + PI LP+ T + ++TGWG
Sbjct: 102 LSGSLTFNDNVAPIALPEQGHTATG-DVIVTGWGT 135
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 209 bits (533), Expect = 4e-64
Identities = 85/272 (31%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
I G G + +PW AI G F CG LI +++AAHC
Sbjct: 1 IKG-GLFADI---ASHPWQAAIFAKHRRSPGER----FLCGGILISSCWILSAAHCFQER 52
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
P + V G R Q+ V + +H+ F+ T NDIAL+ L
Sbjct: 53 FPPHHLTVILGRT-----YRVVPGE-EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDS 106
Query: 407 PVK----NHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNV 461
+ + C P + + D C ++G+GK + Y LK+ V+L P +
Sbjct: 107 SRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALS-PFYSERLKEAHVRLYPSSR 165
Query: 462 CQQQLRKTRLGGVFKLHDSFICA---SGGPNQ----DACKGDGGGPLVCQLKNERDRFTQ 514
C Q L + D+ +CA G Q DAC+GD GGPLVC R T
Sbjct: 166 CTSQ---HLLNR--TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL---NDGRMTL 217
Query: 515 VGIVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
VGI+SWG+GCG D PGVY V + WI DN
Sbjct: 218 VGIISWGLGCGQKDVPGVYTKVTNYLDWIRDN 249
Score = 128 bits (323), Expect = 7e-34
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 14/150 (9%)
Query: 36 GRNTYFGEFPWM--LVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAG 90
G PW + + + E F CG LI L+AAHC Q +V G
Sbjct: 4 GLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILG 63
Query: 91 EWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNID----FDDYIHPI 146
+ EEEQ+ +V +H + +T +N+IALL+L S+ + +
Sbjct: 64 RTYRVVP----GEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTV 119
Query: 147 CLPDWNVTY-DSENCVITGWGRDSADGGGP 175
CLP ++ D C ++G+G+ A
Sbjct: 120 CLPPADLQLPDWTECELSGYGKHEALSPFY 149
Score = 84.3 bits (209), Expect = 2e-18
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNID----FD 266
+V G + EEEQ+ +V +H + +T +N+IALL+L S+
Sbjct: 58 LTVILGRTYRVVP----GEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQES 113
Query: 267 DYIHPICLPDWNVTY-DSENCVITGWGR 293
+ +CLP ++ D C ++G+G+
Sbjct: 114 SVVRTVCLPPADLQLPDWTECELSGYGK 141
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 208 bits (531), Expect = 5e-64
Identities = 73/265 (27%), Positives = 108/265 (40%), Gaps = 41/265 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G + E GE+PW ++ + +CGATLI +++AAHC
Sbjct: 1 IVG-GTEVEE---GEWPWQASLQWD----------GSHRCGATLINATWLVSAAHCFTTY 46
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
G +R + +I +HE ++ + DI+L L P
Sbjct: 47 KNPARWTASFGVTIK----------PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPV 96
Query: 407 PVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
P N + C P+++ E VTG+G K G Q+ L++ +V L+ C
Sbjct: 97 PYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKND--GYSQNHLRQAQVTLIDATTCN-- 152
Query: 466 LRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
+ +CA G DAC+GD GGPLV + RD + GIVSWG
Sbjct: 153 -EPQAYND--AITPRMLCAGSLEGK--TDACQGDSGGPLVSS--DARDIWYLAGIVSWGD 205
Query: 523 GCG-SDTPGVYVDVRKFKKWILDNS 546
C + PGVY V + WI +
Sbjct: 206 ECAKPNKPGVYTRVTALRDWITSKT 230
Score = 136 bits (345), Expect = 4e-37
Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 70/232 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G GE+PW L + +CGA+LI ++AAHC ++ + G
Sbjct: 4 GTEVEEGEWPWQASLQWDGS----HRCGATLINATWLVSAAHCFTTYKNPARWTASFGV- 58
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ +R + + +H Y + + +I+L +LSS + + + +H +CLPD +
Sbjct: 59 -------TIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDAS 111
Query: 153 VT-YDSENCVITGW---------------------------------------------- 165
+ +TG+
Sbjct: 112 YEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSL 171
Query: 166 --GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
D+ D GGPLV D ++ GI +W C P+ PG+Y VT
Sbjct: 172 EGKTDACQGDSGGPLVSSDARD--IWYLAGIVSWGDECAKPNKPGVYTRVTA 221
Score = 86.1 bits (214), Expect = 3e-19
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 230 EEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT-YDSENCVI 288
+ +R + + +H Y + + +I+L +LSS + + + +H +CLPD + + +
Sbjct: 63 SKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFV 122
Query: 289 TGWGR 293
TG+G
Sbjct: 123 TGFGA 127
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 209 bits (533), Expect = 7e-64
Identities = 71/264 (26%), Positives = 107/264 (40%), Gaps = 32/264 (12%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
ITG G + G++PW ++I V CG +L+ V++AAHC +
Sbjct: 1 ITG-GSSAVA---GQWPWQVSITYE----------GVHVCGGSLVSEQWVLSAAHCFPSE 46
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
+V+ G + T+ I H ++ + DIAL+ L P
Sbjct: 47 HHKEAYEVKLGAH-----QLDSYSE-DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPI 100
Query: 407 PVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
+I P + + +C VTGWG V L+++EV L+ R C
Sbjct: 101 TFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSL 160
Query: 466 LR-KTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG 521
+ + + +CA GG +DAC+GD GGPL C + GIVSWG
Sbjct: 161 YNIDAKPEEPHFVQEDMVCAGYVEGG--KDACQGDSGGPLSCP---VEGLWYLTGIVSWG 215
Query: 522 IGCGS-DTPGVYVDVRKFKKWILD 544
CG+ + PGVY + WI
Sbjct: 216 DACGARNRPGVYTLASSYASWIQS 239
Score = 126 bits (319), Expect = 3e-33
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAGEW 92
G + G++PW + + Y CG SL+ L+AAHC + Y V G
Sbjct: 4 GSSAVAGQWPWQVSITYEG----VHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH 59
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
++ E+ + + D+ HP+Y E + +IALL+LS I F YI PI LP
Sbjct: 60 QLDSYSEDA----KVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQ 115
Query: 153 VTYDS-ENCVITGWGRDSADGGGP 175
++ + +C +TGWG +
Sbjct: 116 ASFPNGLHCTVTGWGHVAPSVSLL 139
Score = 87.0 bits (216), Expect = 3e-19
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
Y V G ++ E+ + + D+ HP+Y E + +IALL+LS I F YI
Sbjct: 52 YEVKLGAHQLDSYSEDA----KVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIR 107
Query: 271 PICLPDWNVTYDS-ENCVITGWGR 293
PI LP ++ + +C +TGWG
Sbjct: 108 PISLPAAQASFPNGLHCTVTGWGH 131
Score = 41.9 bits (99), Expect = 3e-04
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 166 GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
G+D+ D GGPL CP + ++ GI +W C + PG+Y +
Sbjct: 186 GKDACQGDSGGPLSCPVEG---LWYLTGIVSWGDACGARNRPGVYTLASS 232
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 208 bits (531), Expect = 9e-64
Identities = 75/270 (27%), Positives = 118/270 (43%), Gaps = 45/270 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G+ + G+ PW + +L +K CGA LI P V+TAAHC++
Sbjct: 1 LID-GKMTRR---GDSPWQVVLLDSK---------KKLACGAVLIHPSWVLTAAHCMDES 47
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+ VR GE+D + + + ++++H N+ T NDIAL+ L P
Sbjct: 48 K--KLLVRLGEYDLRRWEKW------ELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPAT 99
Query: 408 VKNHIGLACTPNSAEEYDD-----QNCIVTGWGKDKFG---VEGRYQSTLKKVEVKLVPR 459
+ I C P+S + Q +VTGWG + L +++ +VP
Sbjct: 100 LSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPH 159
Query: 460 NVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVG 516
N C + + + ++ +CA QDAC+GD GGP+V + VG
Sbjct: 160 NECSEVMS-------NMVSENMLCAGILGDR--QDACEGDSGGPMVAS---FHGTWFLVG 207
Query: 517 IVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
+VSWG GCG GVY V ++ WI +
Sbjct: 208 LVSWGEGCGLLHNYGVYTKVSRYLDWIHGH 237
Score = 141 bits (357), Expect = 1e-38
Identities = 62/231 (26%), Positives = 87/231 (37%), Gaps = 69/231 (29%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ T G+ PW +VL K+ CGA LI P+ LTAAHC+ V GE+ +
Sbjct: 4 GKMTRRGDSPWQVVLLDSKK---KLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLR 60
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
+ E D+ +V +HPNYS T +N+IALL L+ I PICLPD +
Sbjct: 61 ----RWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAE 116
Query: 156 DSE-----NCVITGW--------------------------------------------- 165
++TGW
Sbjct: 117 RELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLC 176
Query: 166 ------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
+D+ D GGP+V T+F VG+ +W C G+Y
Sbjct: 177 AGILGDRQDACEGDSGGPMVASFHG---TWFLVGLVSWGEGCGLLHNYGVY 224
Score = 88.1 bits (219), Expect = 8e-20
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
V GE+ + + E D+ +V +HPNYS T +N+IALL L+ I
Sbjct: 50 LLVRLGEYDLR----RWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIV 105
Query: 271 PICLPDWNVTYDSE-----NCVITGWGR 293
PICLPD + ++TGWG
Sbjct: 106 PICLPDSGLAERELNQAGQETLVTGWGY 133
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 207 bits (529), Expect = 1e-63
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 45/267 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G D+ G++PW + + CG +++ ++TAAHCV
Sbjct: 1 VVG-GEDAKP---GQFPWQVVLNGK----------VDAFCGGSIVNEKWIVTAAHCVET- 45
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF--EAKTVFNDIALIILDFP 405
I V GE + + E Q+R V +I H NF T +DIAL+ LD P
Sbjct: 46 -GVKITVVAGEHN-----IEETEH-TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEP 98
Query: 406 FPVKNHIGLACTPN---SAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
+ +++ C + + + V+GWG+ GR L+ + V LV R C
Sbjct: 99 LVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHK--GRSALVLQYLRVPLVDRATC 156
Query: 463 QQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVS 519
+ + F + ++ CA GG +D+C+GD GGP V + GI+S
Sbjct: 157 LRSTK-------FTITNNMFCAGFHEGG--RDSCQGDSGGPHVTE---VEGTSFLTGIIS 204
Query: 520 WGIGCGS-DTPGVYVDVRKFKKWILDN 545
WG C G+Y V ++ WI +
Sbjct: 205 WGEECAMKGKYGIYTKVSRYVNWIKEK 231
Score = 140 bits (354), Expect = 2e-38
Identities = 59/226 (26%), Positives = 85/226 (37%), Gaps = 65/226 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G + G+FPW +VL CG S++ +TAAHCV+ V +V AGE I
Sbjct: 4 GEDAKPGQFPWQVVLNGKV----DAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIE 59
Query: 96 GIVEEELEEEQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
E EQ+R+V+ + H N+ + T ++IALL+L + + Y+ PIC+ D
Sbjct: 60 ----ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 154 T---YDSENCVITGWGRDSADG-------------------------------------- 172
T + ++GWGR G
Sbjct: 116 TNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHE 175
Query: 173 ----------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
GGP V E T F GI +W C G+Y
Sbjct: 176 GGRDSCQGDSGGPHVT---EVEGTSFLTGIISWGEECAMKGKYGIY 218
Score = 84.9 bits (211), Expect = 7e-19
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNY--STETLENNIALLKLSSNIDFDDY 268
+V AGE I E EQ+R+V+ + H N+ + T ++IALL+L + + Y
Sbjct: 49 ITVVAGEHNIE----ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSY 104
Query: 269 IHPICLPDWNVT---YDSENCVITGWGR 293
+ PIC+ D T + ++GWGR
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGR 132
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 209 bits (533), Expect = 1e-63
Identities = 82/278 (29%), Positives = 114/278 (41%), Gaps = 45/278 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--- 344
I G D+ G PW + + + CGA+LI V+TAAHC+
Sbjct: 31 IVE-GSDAEI---GMSPWQVMLFRKSPQE--------LLCGASLISDRWVLTAAHCLLYP 78
Query: 345 ---NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-EAKTVFNDIALI 400
N D+ VR G+ RT E + + +IYIH + + + DIAL+
Sbjct: 79 PWDKNFTENDLLVRIGKHS-----RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 133
Query: 401 ILDFPFPVKNHIGLACTPNSAEE----YDDQNCIVTGWGK----DKFGVEGRYQSTLKKV 452
L P ++I C P+ VTGWG V S L+ V
Sbjct: 134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV 193
Query: 453 EVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA----SGGPNQDACKGDGGGPLVCQLKNE 508
+ +V R VC+ R ++ D+ CA G DAC+GD GGP V +
Sbjct: 194 NLPIVERPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPF 245
Query: 509 RDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILDN 545
+R+ Q+GIVSWG GC G Y V + KKWI
Sbjct: 246 NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV 283
Score = 133 bits (336), Expect = 2e-35
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--------YSV 87
G + G PW ++LF ++ + CGASLI LTAAHC+ Y V
Sbjct: 34 GSDAEIGMSPWQVMLFR--KSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 91
Query: 88 AAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYIHPI 146
G+ E E+ + + IHP Y+ E L+ +IAL+KL + F DYIHP+
Sbjct: 92 RIGKHSRT---RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 148
Query: 147 CLPDWNVT----YDSENCVITGWGR 167
CLPD +TGWG
Sbjct: 149 CLPDRETAASLLQAGYKGRVTGWGN 173
Score = 86.7 bits (215), Expect = 5e-19
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYI 269
V G+ E E+ + + IHP Y+ E L+ +IAL+KL + F DYI
Sbjct: 89 LLVRIGKHSRT---RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYI 145
Query: 270 HPICLPDWNVT----YDSENCVITGWGR 293
HP+CLPD +TGWG
Sbjct: 146 HPVCLPDRETAASLLQAGYKGRVTGWGN 173
Score = 38.1 bits (89), Expect = 0.005
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 166 GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTYSVAAGEWFIN 221
D+ D GGP V S + ++Q+GI +W C G Y V +W I
Sbjct: 227 RGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK---KW-IQ 281
Query: 222 GIVEEE 227
++++
Sbjct: 282 KVIDQF 287
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 207 bits (529), Expect = 2e-63
Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 30/261 (11%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--N 345
I G G+++ ++PW +++ + CG +LI P V+TAAHCV +
Sbjct: 1 IVG-GQEAPR---SKWPWQVSLRVRD-------RYWMHFCGGSLIHPQWVLTAAHCVGPD 49
Query: 346 NIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFP 405
+ ++V+ E + Q VS+I +H F DIAL+ L+ P
Sbjct: 50 VKDLATLRVQLREQHLYYQD---------QLLPVSRIIVHPQFYIIQTGADIALLELEEP 100
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ + + P ++E + C VTGWG LK+V+V ++ ++C
Sbjct: 101 VNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDA 160
Query: 465 QLRKTRLGG--VFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
+ G V + D +CA G +D+C+GD GGPLVC+ + Q G+VSWG
Sbjct: 161 KYHLGAYTGDDVRIIRDDMLCA-GNSQRDSCQGDSGGPLVCK---VNGTWLQAGVVSWGE 216
Query: 523 GCGS-DTPGVYVDVRKFKKWI 542
GC + PG+Y V + WI
Sbjct: 217 GCAQPNRPGIYTRVTYYLDWI 237
Score = 131 bits (333), Expect = 2e-35
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV----TYSVAAGE 91
G+ ++PW + L R +F CG SLI P LTAAHCV DV T V E
Sbjct: 4 GQEAPRSKWPWQVSLRVRDRYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLRE 62
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
+ ++Q V + +HP + +IALL+L ++ +H + LP
Sbjct: 63 QHLYY-------QDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPA 115
Query: 152 NVTY-DSENCVITGWGRDSADGGGP 175
+ T+ C +TGWG D P
Sbjct: 116 SETFPPGMPCWVTGWGDVDNDEPLP 140
Score = 88.1 bits (219), Expect = 6e-20
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
T V E + ++Q V + +HP + +IALL+L ++ +
Sbjct: 55 TLRVQLREQHLYY-------QDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRV 107
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
H + LP + T+ C +TGWG
Sbjct: 108 HTVMLPPASETFPPGMPCWVTGWGD 132
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 207 bits (528), Expect = 2e-63
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 48/276 (17%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNN- 346
I GR + + G PW+ + CG +L+ ++TAAHC++
Sbjct: 1 IFN-GRPAQK---GTTPWIAMLSHLN---------GQPFCGGSLLGSSWIVTAAHCLHQS 47
Query: 347 -------------IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTV 393
+ +D K+ G+ + ++ Q V +H ++ T
Sbjct: 48 LDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDEN------EQHLGVKHTTLHPQYDPNTF 101
Query: 394 FNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVE 453
ND+AL+ L + + C P + + IV+GWGK R+ TL ++E
Sbjct: 102 ENDVALVELLESPVLNAFVMPICLP-EGPQQEGAMVIVSGWGKQF---LQRFPETLMEIE 157
Query: 454 VKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERD 510
+ +V + CQ+ + K+ ICA GG +DAC GD GGP+V + ER
Sbjct: 158 IPIVDHSTCQKAYAPLK----KKVTRDMICAGEKEGG--KDACAGDSGGPMVTLNR-ERG 210
Query: 511 RFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
++ VG VSWG CG D GVY + K WI
Sbjct: 211 QWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 138 bits (350), Expect = 1e-37
Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 76/239 (31%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT----------- 84
GR G PW+ +L + CG SL+G + +TAAHC+ +
Sbjct: 4 GRPAQKGTTPWIAMLSHLNG---QPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 85 -----YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDF 139
+ + G+ + E EQ V +HP Y T EN++AL++L +
Sbjct: 61 LSPSDFKIILGKHWRL----RSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVL 116
Query: 140 DDYIHPICLPDWNVTYDSENCVITGWGR-------------------------------- 167
+ ++ PICLP+ + +++GWG+
Sbjct: 117 NAFVMPICLPEGPQQ-EGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKK 175
Query: 168 ----------------DSADG--GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
D+ G GGP+V ++E ++ VG +W C D G+Y
Sbjct: 176 KVTRDMICAGEKEGGKDACAGDSGGPMVTLNRER-GQWYLVGTVSWGDDCGKKDRYGVY 233
Score = 90.8 bits (226), Expect = 9e-21
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ + G+ + E EQ V +HP Y T EN++AL++L + + ++
Sbjct: 66 FKIILGKHWRL----RSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVM 121
Query: 271 PICLPDWNVTYDSENCVITGWGRDSAETFFGEYP 304
PICLP+ + +++GWG+ F +P
Sbjct: 122 PICLPEGPQQ-EGAMVIVSGWGK----QFLQRFP 150
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 208 bits (530), Expect = 1e-62
Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G D+ +PW + + G LI + V+TAAH V
Sbjct: 83 IIG-GSDADI---KNFPWQVFF-------------DNPWAGGALINEYWVLTAAHVVEGN 125
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-------EAKTVFNDIALI 400
+ + G + T ++IH + NDIAL+
Sbjct: 126 --REPTMYVGSTS-----VQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALV 178
Query: 401 ILDFPFPVKNHIGLACTPNSAEEY---DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLV 457
L P + + C P ++ +Y D +++GWG+ + + LK + +
Sbjct: 179 RLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTE---KRDRAVRLKAARLPVA 235
Query: 458 PRNVCQQQLRKTRLGGV--FKLHDSFICA--SGGPNQDACKGDGGGPLVCQLKNERDRFT 513
P C++ + + + ICA G D+CKGD GG Q N++ +F
Sbjct: 236 PLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKG--MDSCKGDSGGAFAVQDPNDKTKFY 293
Query: 514 QVGIVSWGIGCGSDTPGVYVDVRKFKKWILDN 545
G+VSWG CG T G+Y V+ + WI+
Sbjct: 294 AAGLVSWGPQCG--TYGLYTRVKNYVDWIMKT 323
Score = 129 bits (327), Expect = 1e-33
Identities = 46/229 (20%), Positives = 71/229 (31%), Gaps = 75/229 (32%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G + FPW + + G +LI LTAAH V+ + ++ G
Sbjct: 86 GSDADIKNFPWQVFF-------DNPWAGGALINEYWVLTAAHVVEGNREPTMYVGST--- 135
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYST-------ETLENNIALLKLSSNIDFDDYIHPICL 148
+ L + + V IHP + +N+IAL++L + + PICL
Sbjct: 136 SVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICL 195
Query: 149 PDWNVTY---DSENCVITGW---------------------------------------- 165
P + Y D + +I+GW
Sbjct: 196 PGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAY 255
Query: 166 -------------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC 199
G DS D GG D T F+ G+ +W C
Sbjct: 256 VFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQC 304
Score = 80.2 bits (198), Expect = 1e-16
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 222 GIVEEELEEEQRRDVLDVRIHPNYST-------ETLENNIALLKLSSNIDFDDYIHPICL 274
+ L + + V IHP + +N+IAL++L + + PICL
Sbjct: 136 SVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICL 195
Query: 275 PDWNVTY---DSENCVITGWGR 293
P + Y D + +I+GWGR
Sbjct: 196 PGTSSDYNLMDGDLGLISGWGR 217
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 207 bits (529), Expect = 1e-62
Identities = 64/270 (23%), Positives = 103/270 (38%), Gaps = 45/270 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--- 344
I G G+ + G +PW + + + G L+ ++TAAH +
Sbjct: 90 IIG-GQKAKM---GNFPWQVFTNIHG------------RGGGALLGDRWILTAAHTLYPK 133
Query: 345 --NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF---EAKTVFNDIAL 399
+ V G + E + ++ +H ++ E+ DIAL
Sbjct: 134 EHEAQSNASLDVFLGHTNV-------EELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 186
Query: 400 IILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVP 458
+ L+ + ++ C P++ YD V+G+G +E + L+ V + +
Sbjct: 187 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVAN 242
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQV 515
C+ LR VF + CA S QDAC+GD GG + DR+
Sbjct: 243 PQACENWLRGKNRMDVFS--QNMFCAGHPSLK--QDACQGDSGGVFAVR-DPNTDRWVAT 297
Query: 516 GIVSWGIGCGSDTPGVYVDVRKFKKWILDN 545
GIVSWGIGC G Y V + WI
Sbjct: 298 GIVSWGIGCS-RGYGFYTKVLNYVDWIKKE 326
Score = 125 bits (317), Expect = 2e-32
Identities = 47/226 (20%), Positives = 75/226 (33%), Gaps = 74/226 (32%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV-------QYDVTYSVA 88
G+ G FPW + + R G +L+G LTAAH + Q + + V
Sbjct: 93 GQKAKMGNFPWQVFTNIHGR------GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVF 146
Query: 89 AGEWFINGIVEEELEEEQRRDVLDVRIHPNYS---TETLENNIALLKLSSNIDFDDYIHP 145
G + EL + + V +HP+Y + E +IALL+L +++ + P
Sbjct: 147 LGHTNVE-----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLP 201
Query: 146 ICLPDWNVTYDS-ENCVITGWGR------------------------------------- 167
ICLPD + YD ++G+G
Sbjct: 202 ICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQ 261
Query: 168 ------------DS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC 199
D+ D GG + GI +W + C
Sbjct: 262 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTD-RWVATGIVSWGIGC 306
Score = 84.4 bits (209), Expect = 5e-18
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 197 VVCTPDMPGLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYS---TETLENN 253
+ + + + V G + EL + + V +HP+Y + E +
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTNVE-----ELMKLGNHPIRRVSVHPDYRQDESYNFEGD 183
Query: 254 IALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVITGWGR 293
IALL+L +++ + PICLPD + YD ++G+G
Sbjct: 184 IALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV 224
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 215 bits (549), Expect = 2e-62
Identities = 79/264 (29%), Positives = 121/264 (45%), Gaps = 36/264 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G S GE+PW + + T CG ++I ++TAAHC +
Sbjct: 388 IVG-GTASVR---GEWPWQVTLHTTS-------PTQRHLCGGSIIGNQWILTAAHCFYGV 436
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
++V G N+++ + V +I IH+ ++ DIAL+ L+
Sbjct: 437 ESPKILRVYSGIL-----NQSEIKE-DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTV 490
Query: 407 PVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
+ C P+ + +C VTGWG K + Q+TL+K ++ LV CQ++
Sbjct: 491 NYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKR 548
Query: 466 LRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
R + + ICA GG +DACKGD GGPL C+ + + VGI SWG
Sbjct: 549 YRGHK------ITHKMICAGYREGG--KDACKGDSGGPLSCK---HNEVWHLVGITSWGE 597
Query: 523 GCGS-DTPGVYVDVRKFKKWILDN 545
GC + PGVY +V ++ WIL+
Sbjct: 598 GCAQRERPGVYTNVVEYVDWILEK 621
Score = 141 bits (358), Expect = 4e-36
Identities = 59/231 (25%), Positives = 84/231 (36%), Gaps = 63/231 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G + GE+PW V + + CG S+IG LTAAHC + V +G
Sbjct: 391 GTASVRGEWPWQ-VTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGIL 449
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ I E+ V ++ IH Y +IALLKL + +++ D PICLP
Sbjct: 450 NQSEI----KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKG 505
Query: 153 VT-YDSENCVITGWG--------------------------------------------- 166
+C +TGWG
Sbjct: 506 DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 565
Query: 167 --RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
+D+ D GGPL C E + VGI +W C + PG+Y +V
Sbjct: 566 GGKDACKGDSGGPLSCKHNE---VWHLVGITSWGEGCAQRERPGVYTNVVE 613
Score = 87.6 bits (217), Expect = 2e-18
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
V +G + I E+ V ++ IH Y +IALLKL + +++ D
Sbjct: 442 LRVYSGILNQSEI----KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQR 497
Query: 271 PICLPDWNVT-YDSENCVITGWGR 293
PICLP +C +TGWG
Sbjct: 498 PICLPSKGDRNVIYTDCWVTGWGY 521
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 204 bits (521), Expect = 6e-62
Identities = 77/270 (28%), Positives = 109/270 (40%), Gaps = 38/270 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G + PW AI + + CG +L+ P V++A HC +
Sbjct: 24 IIG-GEFTTI---ENQPWFAAIYRRHRGGSVT-----YVCGGSLMSPCWVISATHCFIDY 74
Query: 348 P-VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDF 404
P D V G + V + +H+++ A T+ NDIAL+ +
Sbjct: 75 PKKEDYIVYLGRS-----RLNSNTQ-GEMKFEVENLILHKDYSADTLAHHNDIALLKIRS 128
Query: 405 PFPVK----NHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPR 459
I C P+ + +C +TG+GK+ + Y LK VKL+
Sbjct: 129 KEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST-DYLYPEQLKMTVVKLISH 187
Query: 460 NVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVG 516
CQQ G ++ +CA D+C+GD GGPLVC + R T G
Sbjct: 188 RECQQ---PHYYGS--EVTTKMLCAADPQWK--TDSCQGDSGGPLVCS---LQGRMTLTG 237
Query: 517 IVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
IVSWG GC D PGVY V F WI +
Sbjct: 238 IVSWGRGCALKDKPGVYTRVSHFLPWIRSH 267
Score = 126 bits (318), Expect = 6e-33
Identities = 59/256 (23%), Positives = 89/256 (34%), Gaps = 75/256 (29%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNME-YFKCGASLIGPNIALTAAHCVQYDV---TYSVAAGE 91
G T PW ++ R + CG SL+ P ++A HC Y V G
Sbjct: 27 GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGR 86
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSS----NIDFDDYIHP 145
+N + E + +V ++ +H +YS +TL ++ IALLK+ S I
Sbjct: 87 SRLNSNT----QGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 142
Query: 146 ICLPDWNVTY-DSENCVITGWGRDSADG-------------------------------- 172
ICLP +C ITG+G++++
Sbjct: 143 ICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT 202
Query: 173 -------------------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGPLVC GI +W C D PG+Y V++
Sbjct: 203 KMLCAADPQWKTDSCQGDSGGPLVC---SLQGRMTLTGIVSWGRGCALKDKPGVYTRVSH 259
Query: 212 SVAAGEWFINGIVEEE 227
+ W I +EE
Sbjct: 260 FL---PW-IRSHTKEE 271
Score = 78.9 bits (195), Expect = 1e-16
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSS----NI 263
Y V G +N + E + +V ++ +H +YS +TL ++ IALLK+ S
Sbjct: 79 DYIVYLGRSRLNSNTQGE----MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCA 134
Query: 264 DFDDYIHPICLPDWNVTY-DSENCVITGWGR 293
I ICLP +C ITG+G+
Sbjct: 135 QPSRTIQTICLPSMYNDPQFGTSCEITGFGK 165
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 207 bits (529), Expect = 6e-62
Identities = 76/272 (27%), Positives = 115/272 (42%), Gaps = 45/272 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G GRD++ G +PW +++ + CG +L+ V+TAAHC
Sbjct: 118 IVG-GRDTSL---GRWPWQVSLRYD----------GAHLCGGSLLSGDWVLTAAHCFPER 163
Query: 348 --PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF------NDIAL 399
++ +V G + + V + H + NDIAL
Sbjct: 164 NRVLSRWRVFAGA--------VAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIAL 215
Query: 400 IILDFPFPVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVP 458
+ L P P+ +I C P + + D + C VTGWG ++ G+ L++ V ++
Sbjct: 216 VHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYY--GQQAGVLQEARVPIIS 273
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQ-LKNERDRFTQ 514
+VC G ++ CA GG DAC+GD GGP VC+ + R+
Sbjct: 274 NDVCN---GADFYGN--QIKPKMFCAGYPEGG--IDACQGDSGGPFVCEDSISRTPRWRL 326
Query: 515 VGIVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
GIVSWG GC PGVY V F++WI
Sbjct: 327 CGIVSWGTGCALAQKPGVYTKVSDFREWIFQA 358
Score = 128 bits (323), Expect = 7e-33
Identities = 61/237 (25%), Positives = 84/237 (35%), Gaps = 68/237 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
GR+T G +PW + L Y CG SL+ + LTAAHC + W +
Sbjct: 121 GRDTSLGRWPWQVSLRYDGA----HLCGGSLLSGDWVLTAAHCFP---ERNRVLSRWRVF 173
Query: 96 -GIVEEELEEEQRRDVLDVRIHPNY------STETLENNIALLKLSSNIDFDDYIHPICL 148
G V + + V V H Y ++E N+IAL+ LSS + +YI P+CL
Sbjct: 174 AGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCL 233
Query: 149 PDWNVT-YDSENCVITGW------------------------------------------ 165
P D + C +TGW
Sbjct: 234 PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFC 293
Query: 166 ------GRDS--ADGGGPLVCPSKEDPT-TFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
G D+ D GGP VC T + GI +W C PG+Y V+
Sbjct: 294 AGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSD 350
Score = 79.0 bits (195), Expect = 5e-16
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 222 GIVEEELEEEQRRDVLDVRIHPNY------STETLENNIALLKLSSNIDFDDYIHPICLP 275
G V + + V V H Y ++E N+IAL+ LSS + +YI P+CLP
Sbjct: 175 GAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLP 234
Query: 276 DWNVT-YDSENCVITGWGR 293
D + C +TGWG
Sbjct: 235 AAGQALVDGKICTVTGWGN 253
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 207 bits (528), Expect = 1e-61
Identities = 64/270 (23%), Positives = 103/270 (38%), Gaps = 45/270 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--- 344
I G G+ + G +PW + + + G L+ ++TAAH +
Sbjct: 158 IIG-GQKAKM---GNFPWQVFTNIHG------------RGGGALLGDRWILTAAHTLYPK 201
Query: 345 --NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF---EAKTVFNDIAL 399
+ V G + E + ++ +H ++ E+ DIAL
Sbjct: 202 EHEAQSNASLDVFLGHTNV-------EELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 254
Query: 400 IILDFPFPVKNHIGLACTPNSAEEYDD-QNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVP 458
+ L+ + ++ C P++ YD V+G+G +E + L+ V + +
Sbjct: 255 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV----MEEKIAHDLRFVRLPVAN 310
Query: 459 RNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQV 515
C+ LR VF + CA S QDAC+GD GG + DR+
Sbjct: 311 PQACENWLRGKNRMDVFS--QNMFCAGHPSLK--QDACQGDSGGVFAVR-DPNTDRWVAT 365
Query: 516 GIVSWGIGCGSDTPGVYVDVRKFKKWILDN 545
GIVSWGIGC G Y V + WI
Sbjct: 366 GIVSWGIGCS-RGYGFYTKVLNYVDWIKKE 394
Score = 126 bits (319), Expect = 5e-32
Identities = 57/256 (22%), Positives = 88/256 (34%), Gaps = 82/256 (32%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCV-------QYDVTYSVA 88
G+ G FPW + + R G +L+G LTAAH + Q + + V
Sbjct: 161 GQKAKMGNFPWQVFTNIHGR------GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVF 214
Query: 89 AGEWFINGIVEEELEEEQRRDVLDVRIHPNYS---TETLENNIALLKLSSNIDFDDYIHP 145
G + EEL + + V +HP+Y + E +IALL+L +++ + P
Sbjct: 215 LGHTNV-----EELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLP 269
Query: 146 ICLPDWNVTYDS-ENCVITGWG-------------------------------------- 166
ICLPD + YD ++G+G
Sbjct: 270 ICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQ 329
Query: 167 -----------RDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
+D+ D GG + GI +W + C G Y V
Sbjct: 330 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTD-RWVATGIVSWGIGCSRG--YGFYTKVLN 386
Query: 212 SVAAGEWFINGIVEEE 227
V +W I +EEE
Sbjct: 387 YV---DW-IKKEMEEE 398
Score = 83.7 bits (207), Expect = 2e-17
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 198 VCTPDMPGLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYS---TETLENNI 254
+ + + + V G + EEL + + V +HP+Y + E +I
Sbjct: 198 LYPKEHEAQSNASLDVFLGHTNV-----EELMKLGNHPIRRVSVHPDYRQDESYNFEGDI 252
Query: 255 ALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVITGWGR 293
ALL+L +++ + PICLPD + YD ++G+G
Sbjct: 253 ALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV 292
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 200 bits (512), Expect = 3e-61
Identities = 51/247 (20%), Positives = 85/247 (34%), Gaps = 33/247 (13%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
+ PW +A+ T CG ++ V+TAAHCV + I ++
Sbjct: 9 KQVPWTVAVRTYPGE-------ESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYES-- 59
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKN-HIGLACTPN 419
T+ P + + +T+ NDIA++ L P + A P+
Sbjct: 60 ------TNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPD 113
Query: 420 SAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLH 478
+ +V+G+G + LK ++ +V + C+ + G L
Sbjct: 114 IEFRPKTGSDVLVSGYGDGQTM--DPKDHDLKSAQLTVVDLDECRTKY------GPIFLS 165
Query: 479 DSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKF 538
CA GD G P V Q T VG+ ++ P V+ V +
Sbjct: 166 LQVFCA-QKVGVSLESGDAGDPTVQQ-------DTLVGVAAYFPKRPEGAPEVFTKVGSY 217
Query: 539 KKWILDN 545
WI D
Sbjct: 218 VSWIQDI 224
Score = 133 bits (338), Expect = 4e-36
Identities = 45/244 (18%), Positives = 74/244 (30%), Gaps = 70/244 (28%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGEWF 93
G T + PW + + Y CG +++ LTAAHCV T +
Sbjct: 3 GEKTDIKQVPWTVAVRTYPGEESLT-CGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDY-IHPICLPDWN 152
+ + + + Y ET+EN+IA+L+LS + D P LPD
Sbjct: 62 LWE------DPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIE 115
Query: 153 VT-YDSENCVITGWGRDSADG--------------------------------------- 172
+ +++G+G
Sbjct: 116 FRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVG 175
Query: 173 --------GGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY-DVTYSVAAGEWFINGI 223
G P V VG+AA+ P ++ V V W I I
Sbjct: 176 VSLESGDAGDPTVQQDT-------LVGVAAYFPKRPEGAPEVFTKVGSYV---SW-IQDI 224
Query: 224 VEEE 227
++++
Sbjct: 225 IKKK 228
Score = 78.0 bits (193), Expect = 1e-16
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 205 GLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNID 264
T + + + + + Y ET+EN+IA+L+LS +
Sbjct: 47 DQKPETIVIQYESTNLWE------DPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLK 100
Query: 265 FDDY-IHPICLPDWNVT-YDSENCVITGWGR 293
D P LPD + +++G+G
Sbjct: 101 LDGLKSKPAKLPDIEFRPKTGSDVLVSGYGD 131
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 201 bits (514), Expect = 3e-61
Identities = 76/270 (28%), Positives = 106/270 (39%), Gaps = 38/270 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
I G G + PW AI + + CG +LI P V++A HC +
Sbjct: 1 IIG-GEFTTI---ENQPWFAAIYRRHRGGSVT-----YVCGGSLISPCWVISATHCFIDY 51
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDF 404
D V G + V + +H+++ A T+ NDIAL+ +
Sbjct: 52 PKKEDYIVYLGRS-----RLNSNTQ-GEMKFEVENLILHKDYSADTLAHHNDIALLKIRS 105
Query: 405 PFPVK----NHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPR 459
I P+ + +C +TG+GK+ Y LK VKL+
Sbjct: 106 KEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTD-YLYPEQLKMTVVKLISH 164
Query: 460 NVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVG 516
CQQ G ++ +CA D+C+GD GGPLVC + R T G
Sbjct: 165 RECQQ---PHYYGS--EVTTKMLCAADPQWK--TDSCQGDSGGPLVCS---LQGRMTLTG 214
Query: 517 IVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
IVSWG GC D PGVY V F WI +
Sbjct: 215 IVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 125 bits (316), Expect = 6e-33
Identities = 55/240 (22%), Positives = 82/240 (34%), Gaps = 71/240 (29%)
Query: 36 GRNTYFGEFPWMLVLFYYKR-NMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAGE 91
G T PW ++ R + CG SLI P ++A HC Y V G
Sbjct: 4 GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGR 63
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSS----NIDFDDYIHP 145
+N + E + +V ++ +H +YS +TL ++ IALLK+ S I
Sbjct: 64 SRLNSN----TQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 146 ICLPDWNVTY-DSENCVITGWGRDSADG-------------------------------- 172
I LP +C ITG+G++++
Sbjct: 120 ISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT 179
Query: 173 -------------------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGPLVC GI +W C D PG+Y V++
Sbjct: 180 KMLCAADPQWKTDSCQGDSGGPLVC---SLQGRMTLTGIVSWGRGCALKDKPGVYTRVSH 236
Score = 78.8 bits (195), Expect = 1e-16
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSS----NI 263
Y V G +N + E + +V ++ +H +YS +TL ++ IALLK+ S
Sbjct: 56 DYIVYLGRSRLNSN----TQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCA 111
Query: 264 DFDDYIHPICLPDWNVTY-DSENCVITGWGR 293
I I LP +C ITG+G+
Sbjct: 112 QPSRTIQTISLPSMYNDPQFGTSCEITGFGK 142
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 200 bits (512), Expect = 4e-61
Identities = 71/269 (26%), Positives = 109/269 (40%), Gaps = 38/269 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G +++ GE+PW ++ CGA+L+ ++A+HCV+ +
Sbjct: 1 VIG-GTNASP---GEFPWQLSQQRQS-------GSWSHSCGASLLSSTSALSASHCVDGV 49
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTV--FNDIALIILDFP 405
+I+V G W + Q V +HEN+ A T NDIA++ L
Sbjct: 50 LPNNIRVIAGLWQQSDTS-------GTQTANVDSYTMHENYGAGTASYSNDIAILHLATS 102
Query: 406 FPVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ +I A P + Y C+++GWG+ L+K + ++ C
Sbjct: 103 ISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGT--NNLPDILQKSSIPVITTAQCTA 160
Query: 465 QLRKTRLGGVFKLHDSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSW-- 520
+ G + D+ IC P AC GD GGPL C VG+ SW
Sbjct: 161 AMVGV---GGANIWDNHICV-QDPAGNTGACNGDSGGPLNCP----DGGTRVVGVTSWVV 212
Query: 521 --GIGCGS-DTPGVYVDVRKFKKWILDNS 546
G+G D P VY V + WI DNS
Sbjct: 213 SSGLGACLPDYPSVYTRVSAYLGWIGDNS 241
Score = 137 bits (348), Expect = 1e-37
Identities = 61/239 (25%), Positives = 82/239 (34%), Gaps = 73/239 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV--TYSVAAGEWF 93
G N GEFPW + + CGASL+ AL+A+HCV + V AG W
Sbjct: 4 GTNASPGEFPWQ-LSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQ 62
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTET--LENNIALLKLSSNIDFDDYIHPICLPDW 151
+ + Q +V +H NY T N+IA+L L+++I I LP
Sbjct: 63 QS-----DTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPAN 117
Query: 152 NVT-YDSENCVITGW--------------------------------------------- 165
N Y CVI+GW
Sbjct: 118 NNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICV 177
Query: 166 -----GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVV-----CTPDMPGLY-DVTY 211
+ D GGPL CP VG+ +W V C PD P +Y V+
Sbjct: 178 QDPAGNTGACNGDSGGPLNCPDG----GTRVVGVTSWVVSSGLGACLPDYPSVYTRVSA 232
Score = 85.4 bits (212), Expect = 6e-19
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTET--LENNIALLKLSSNIDFDD 267
V AG W + + Q +V +H NY T N+IA+L L+++I
Sbjct: 53 NIRVIAGLWQQS-----DTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGG 107
Query: 268 YIHPICLPDWNVT-YDSENCVITGWGR 293
I LP N Y CVI+GWGR
Sbjct: 108 NIQAAVLPANNNNDYAGTTCVISGWGR 134
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 206 bits (526), Expect = 5e-61
Identities = 82/278 (29%), Positives = 114/278 (41%), Gaps = 45/278 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G D+ G PW + + + CGA+LI V+TAAHC+
Sbjct: 166 IVE-GSDAEI---GMSPWQVMLFRKSPQE--------LLCGASLISDRWVLTAAHCLLYP 213
Query: 348 P------VTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-EAKTVFNDIALI 400
P D+ VR G+ RT E + + +IYIH + + + DIAL+
Sbjct: 214 PWDKNFTENDLLVRIGKHS-----RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM 268
Query: 401 ILDFPFPVKNHIGLACTPNSAEE----YDDQNCIVTGWGK----DKFGVEGRYQSTLKKV 452
L P ++I C P+ VTGWG V S L+ V
Sbjct: 269 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV 328
Query: 453 EVKLVPRNVCQQQLRKTRLGGVFKLHDSFICA----SGGPNQDACKGDGGGPLVCQLKNE 508
+ +V R VC+ R ++ D+ CA G DAC+GD GGP V +
Sbjct: 329 NLPIVERPVCKDSTR-------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK-SPF 380
Query: 509 RDRFTQVGIVSWGIGCG-SDTPGVYVDVRKFKKWILDN 545
+R+ Q+GIVSWG GC G Y V + KKWI
Sbjct: 381 NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV 418
Score = 131 bits (331), Expect = 1e-33
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--------YSV 87
G + G PW ++LF ++ + CGASLI LTAAHC+ Y V
Sbjct: 169 GSDAEIGMSPWQVMLFR--KSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 226
Query: 88 AAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYIHPI 146
G+ E E+ + + IHP Y+ E L+ +IAL+KL + F DYIHP+
Sbjct: 227 RIGKHSRT---RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 283
Query: 147 CLPDWNVT----YDSENCVITGWGR 167
CLPD +TGWG
Sbjct: 284 CLPDRETAASLLQAGYKGRVTGWGN 308
Score = 86.8 bits (215), Expect = 2e-18
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNIDFDDYI 269
V G+ E E+ + + IHP Y+ E L+ +IAL+KL + F DYI
Sbjct: 224 LLVRIGKHSRT---RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYI 280
Query: 270 HPICLPDWNVT----YDSENCVITGWGR---DSAETFFGEYP 304
HP+CLPD +TGWG P
Sbjct: 281 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 322
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 200 bits (510), Expect = 1e-60
Identities = 67/269 (24%), Positives = 98/269 (36%), Gaps = 43/269 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
I G G S G +PW+ AI C +L+ V++AAHC ++
Sbjct: 1 IIG-GSSSLP---GSHPWLAAIYIGD-----------SFCAGSLVHTCWVVSAAHCFSHS 45
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-EAKTVFNDIALIILDFP 405
P + V G+ Q + + + + +D+ LI L
Sbjct: 46 PPRDSVSVVLGQH-----FFNRTTD-VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKK 99
Query: 406 FPVK----NHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRN 460
+ C P + C + GWG V Y S+L++ V LV +
Sbjct: 100 GDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENV-SGYSSSLREALVPLVADH 158
Query: 461 VCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGI 517
C G + + +CA DAC+GD GGPL C+ + GI
Sbjct: 159 KCS---SPEVYGA--DISPNMLCAGYFDCK--SDACQGDSGGPLACE---KNGVAYLYGI 208
Query: 518 VSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
+SWG GCG PGVY V + WI D
Sbjct: 209 ISWGDGCGRLHKPGVYTRVANYVDWINDR 237
Score = 124 bits (313), Expect = 2e-32
Identities = 48/238 (20%), Positives = 76/238 (31%), Gaps = 74/238 (31%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAGEW 92
G ++ G PW+ ++ C SL+ ++AAHC + + SV G+
Sbjct: 4 GSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH 58
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNID----FDDYIHPIC 147
F N + Q + + YS ++++ L++L D ++ PIC
Sbjct: 59 FFNRT----TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPIC 114
Query: 148 LPDWNVTY-DSENCVITGW----------------------------------------- 165
LP+ T+ C I GW
Sbjct: 115 LPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNM 174
Query: 166 --------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
D+ D GGPL C E + GI +W C PG+Y V
Sbjct: 175 LCAGYFDCKSDACQGDSGGPLAC---EKNGVAYLYGIISWGDGCGRLHKPGVYTRVAN 229
Score = 81.1 bits (201), Expect = 2e-17
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNID----F 265
SV G+ F N + Q + + YS ++++ L++L D
Sbjct: 51 VSVVLGQHFFNRT----TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 266 DDYIHPICLPDWNVTY-DSENCVITGWGR 293
++ PICLP+ T+ C I GWG
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGH 135
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 204 bits (521), Expect = 2e-60
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 42/269 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--N 345
I G G+ + G++PW + IL L+ + V+TAAH V
Sbjct: 162 IYG-GQKAKP---GDFPWQVLILGG------------TTAAGALLYDNWVLTAAHAVYEQ 205
Query: 346 NIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-NDIALIILDF 404
+ + +R G ++ + Y + ++IHE + F NDIALI L+
Sbjct: 206 KHDASALDIRMGTLKRLSPH--------YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNN 257
Query: 405 PFPVKNHIGLACTPNSAEEY---DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNV 461
+ ++I C P E D +GWG + G L V++ +V
Sbjct: 258 KVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ---RGFLARNLMYVDIPIVDHQK 314
Query: 462 CQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIV 518
C K + + +CA SGG +D+C+GD GG LV E +R+ GIV
Sbjct: 315 CTAAYEKPPYPR-GSVTANMLCAGLESGG--KDSCRGDSGGALVFLDS-ETERWFVGGIV 370
Query: 519 SWG-IGCGS-DTPGVYVDVRKFKKWILDN 545
SWG + CG GVY V + WI +
Sbjct: 371 SWGSMNCGEAGQYGVYTKVINYIPWIENI 399
Score = 128 bits (324), Expect = 9e-33
Identities = 51/232 (21%), Positives = 76/232 (32%), Gaps = 70/232 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G+ G+FPW +++ +L+ N LTAAH V A I
Sbjct: 165 GQKAKPGDFPWQVLILGG------TTAAGALLYDNWVLTAAHAVY---EQKHDASALDIR 215
Query: 96 -GIVEEELEEEQRRDVLDVRIHPNYSTETLENN-IALLKLSSNIDFDDYIHPICLPDWNV 153
G ++ + V IH Y+ + +N IAL+KL++ + + I PICLP
Sbjct: 216 MGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEA 275
Query: 154 TY---DSENCVITGW--------------------------------------------- 165
+ +GW
Sbjct: 276 ESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLC 335
Query: 166 ------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
G+DS D GG LV E +F GI +W S+ C G+Y
Sbjct: 336 AGLESGGKDSCRGDSGGALVFLDSETE-RWFVGGIVSWGSMNCGEAGQYGVY 386
Score = 80.6 bits (199), Expect = 2e-16
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 222 GIVEEELEEEQRRDVLDVRIHPNYSTETLENN-IALLKLSSNIDFDDYIHPICLPDWNVT 280
G ++ + V IH Y+ + +N IAL+KL++ + + I PICLP
Sbjct: 217 GTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE 276
Query: 281 Y---DSENCVITGWGR 293
+ +GWG
Sbjct: 277 SFMRTDDIGTASGWGL 292
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 200 bits (511), Expect = 2e-60
Identities = 67/269 (24%), Positives = 98/269 (36%), Gaps = 43/269 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
I G G S G +PW+ AI C +L+ V++AAHC ++
Sbjct: 36 IIG-GSSSLP---GSHPWLAAIYIGD-----------SFCAGSLVHTCWVVSAAHCFSHS 80
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-EAKTVFNDIALIILDFP 405
P + V G+ Q + + + + +D+ LI L
Sbjct: 81 PPRDSVSVVLGQH-----FFNRTTD-VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKK 134
Query: 406 FPVK----NHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRN 460
+ C P + C + GWG V Y S+L++ V LV +
Sbjct: 135 GDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENV-SGYSSSLREALVPLVADH 193
Query: 461 VCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGI 517
C G + + +CA DAC+GD GGPL C+ + GI
Sbjct: 194 KCS---SPEVYGA--DISPNMLCAGYFDCK--SDACQGDSGGPLACE---KNGVAYLYGI 243
Query: 518 VSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
+SWG GCG PGVY V + WI D
Sbjct: 244 ISWGDGCGRLHKPGVYTRVANYVDWINDR 272
Score = 123 bits (312), Expect = 5e-32
Identities = 48/238 (20%), Positives = 76/238 (31%), Gaps = 74/238 (31%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAGEW 92
G ++ G PW+ ++ C SL+ ++AAHC + + SV G+
Sbjct: 39 GSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH 93
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNID----FDDYIHPIC 147
F N + Q + + YS ++++ L++L D ++ PIC
Sbjct: 94 FFNRT----TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPIC 149
Query: 148 LPDWNVTY-DSENCVITGW----------------------------------------- 165
LP+ T+ C I GW
Sbjct: 150 LPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNM 209
Query: 166 --------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
D+ D GGPL C E + GI +W C PG+Y V
Sbjct: 210 LCAGYFDCKSDACQGDSGGPLAC---EKNGVAYLYGIISWGDGCGRLHKPGVYTRVAN 264
Score = 82.0 bits (203), Expect = 2e-17
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST-ETLENNIALLKLSSNID---- 264
+ SV G+ F N + Q + + YS ++++ L++L D
Sbjct: 85 SVSVVLGQHFFNRT----TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 140
Query: 265 FDDYIHPICLPDWNVTY-DSENCVITGWGR 293
++ PICLP+ T+ C I GWG
Sbjct: 141 RSQFVQPICLPEPGSTFPAGHKCQIAGWGH 170
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 198 bits (505), Expect = 3e-60
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 45/264 (17%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G ++ G++P++++I N CG +L+ + V+TAAHCV+
Sbjct: 1 IVG-GTSASA---GDFPFIVSISRN----------GGPWCGGSLLNANTVLTAAHCVSGY 46
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+ ++R G + ++S + +H ++ ND+A++ L P
Sbjct: 47 AQSGFQIRAGSLSRTSGG---------ITSSLSSVRVHPSYSGNN--NDLAILKLSTSIP 95
Query: 408 VKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
+IG A S + + V GWG G L KV V +V R C+ Q
Sbjct: 96 SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSS-TPVNLLKVTVPIVSRATCRAQY 154
Query: 467 RKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG 523
G + + CA SGG +D+C+GD GGP+V T +G VSWG G
Sbjct: 155 ------GTSAITNQMFCAGVSSGG--KDSCQGDSGGPIVDS------SNTLIGAVSWGNG 200
Query: 524 CGS-DTPGVYVDVRKFKKWILDNS 546
C + GVY V + +I +
Sbjct: 201 CARPNYSGVYASVGALRSFIDTYA 224
Score = 126 bits (320), Expect = 8e-34
Identities = 50/231 (21%), Positives = 74/231 (32%), Gaps = 74/231 (32%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--YSVAAGEWF 93
G + G+FP+++ + CG SL+ N LTAAHCV + + AG
Sbjct: 4 GTSASAGDFPFIVSISRNG----GPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLS 59
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ VR+HP+YS N++A+LKLS++I I L
Sbjct: 60 RT-------SGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGS 110
Query: 154 T-YDSENCVITGWGRDSADG---------------------------------------- 172
+ + GWG S G
Sbjct: 111 DPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSS 170
Query: 173 ----------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGP+V S +G +W C P+ G+Y V
Sbjct: 171 GGKDSCQGDSGGPIVDSS------NTLIGAVSWGNGCARPNYSGVYASVGA 215
Score = 79.1 bits (196), Expect = 5e-17
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ + AG + VR+HP+YS N++A+LKLS++I I
Sbjct: 51 FQIRAGSLSRT-------SGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIG 101
Query: 271 PICLPDWNVT-YDSENCVITGWGR 293
L + + GWG
Sbjct: 102 YARLAASGSDPVAGSSATVAGWGA 125
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 198 bits (507), Expect = 3e-60
Identities = 75/261 (28%), Positives = 113/261 (43%), Gaps = 35/261 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G D+ +PW +++ + N CG TLI P+ V+TAAHC++N
Sbjct: 14 VVG-GEDAIP---HSWPWQISLQYLRDNT------WRHTCGGTLITPNHVLTAAHCISN- 62
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+V G+ + + V I++HE + + V NDIALI L
Sbjct: 63 -TLTYRVALGKNN-----LEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVE 116
Query: 408 VKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
+ + I +AC P+ D C VTGWG+ G + L++ +V C Q
Sbjct: 117 LGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTN--GPIAAELQQGLQPVVDYATCSQ-- 172
Query: 467 RKTRLGGVFKLHDSFICA--SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG- 523
+ G + ++ +CA G AC GD GGPL CQ ++ GIVS+G G
Sbjct: 173 -RDWWGT--TVKETMVCAGGDGV--ISACNGDSGGPLNCQ---ADGQWDVRGIVSFGSGL 224
Query: 524 -CG-SDTPGVYVDVRKFKKWI 542
C P V+ V + WI
Sbjct: 225 SCNTFKKPTVFTRVSAYIDWI 245
Score = 145 bits (369), Expect = 2e-40
Identities = 54/225 (24%), Positives = 83/225 (36%), Gaps = 59/225 (26%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G + +PW + L Y + N CG +LI PN LTAAHC+ +TY VA G+ +
Sbjct: 17 GEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLE 76
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
E V + +H +++ + N+IAL+KL+ ++ D I CLP
Sbjct: 77 VEDEAG---SLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLL 133
Query: 156 -DSENCVITGWGRDSADG------------------------------------------ 172
C +TGWGR +G
Sbjct: 134 PQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVI 193
Query: 173 -------GGPLVCPSKEDPTTFFQVGIAAW--SVVC-TPDMPGLY 207
GGPL C + + GI ++ + C T P ++
Sbjct: 194 SACNGDSGGPLNCQADG---QWDVRGIVSFGSGLSCNTFKKPTVF 235
Score = 89.6 bits (223), Expect = 3e-20
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
TY VA G+ + E V + +H +++ + N+IAL+KL+ ++ D I
Sbjct: 65 TYRVALGKNNLEVEDEAG---SLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTI 121
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
CLP C +TGWGR
Sbjct: 122 QVACLPSEGSLLPQDYPCFVTGWGR 146
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 197 bits (504), Expect = 4e-60
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 37/246 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI-PVTDIKVRGGEW 359
G+YP+ +++ + +CGA+++ + V+TAAHCV+ + + +KV G
Sbjct: 10 GKYPYQVSLRLS----------GSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVG-- 57
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
TN ++ V +++N++ + ND+AL+ L P + +
Sbjct: 58 ---TNYLSE----SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLST 110
Query: 420 SAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ E+ + C +TGWG + G G + L+++E+ + P+ C++ +++ D
Sbjct: 111 NDEDLESNPCTLTGWGSTRLG--GNTPNALQEIELIVHPQKQCERDQ--------WRVID 160
Query: 480 SFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKFK 539
S IC + AC GD GGPLV Q+GIVS+G C P VY V F
Sbjct: 161 SHICTLTKRGEGACHGDSGGPLVAN-------GAQIGIVSFGSPCALGEPDVYTRVSSFV 213
Query: 540 KWILDN 545
WI N
Sbjct: 214 SWINAN 219
Score = 141 bits (359), Expect = 3e-39
Identities = 54/226 (23%), Positives = 83/226 (36%), Gaps = 68/226 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAGEW 92
G++ G++P+ + L +CGAS++ N LTAAHCV V G
Sbjct: 4 GKDAPVGKYPYQVSLRLSG----SHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTN 59
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+++ E DV D ++ NY L N++AL+ L++ I F+D + PI L +
Sbjct: 60 YLS-------ESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTND 112
Query: 153 VTYDSENCVITGWGRDSADG---------------------------------------- 172
+S C +TGWG G
Sbjct: 113 EDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEG 172
Query: 173 ------GGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY-DVTY 211
GGPLV Q+GI ++ C P +Y V+
Sbjct: 173 ACHGDSGGPLVANGA-------QIGIVSFGSPCALGEPDVYTRVSS 211
Score = 91.8 bits (229), Expect = 2e-21
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
V G +++ E DV D ++ NY L N++AL+ L++ I F+D +
Sbjct: 51 RLKVHVGTNYLS-------ESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLV 103
Query: 270 HPICLPDWNVTYDSENCVITGWGR 293
PI L + +S C +TGWG
Sbjct: 104 QPIKLSTNDEDLESNPCTLTGWGS 127
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 195 bits (498), Expect = 5e-59
Identities = 77/261 (29%), Positives = 120/261 (45%), Gaps = 44/261 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
+ G G + +PW +++ T + CG TLI P V+TAAHC+ +
Sbjct: 18 VVG-GCVAHP---HSWPWQVSLRTRF---------GMHFCGGTLISPEWVLTAAHCLEKS 64
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
+ KV G + QE VS++++ DIAL+ L P
Sbjct: 65 PRPSSYKVILGAHQEVNLE------PHVQEIEVSRLFLEPTR------KDIALLKLSSPA 112
Query: 407 PVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
+ + + AC P+ D C +TGWG+ + LK+ ++ ++ VC
Sbjct: 113 VITDKVIPACLPSPNYVVADRTECFITGWGETQ---GTFGAGLLKEAQLPVIENKVCN-- 167
Query: 466 LRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
R L G ++ + +CA +GG D+C+GD GGPLVC E+D++ G+ SWG+
Sbjct: 168 -RYEFLNG--RVQSTELCAGHLAGG--TDSCQGDAGGPLVCF---EKDKYILQGVTSWGL 219
Query: 523 GCGS-DTPGVYVDVRKFKKWI 542
GC + PGVYV V +F WI
Sbjct: 220 GCARPNKPGVYVRVSRFVTWI 240
Score = 123 bits (311), Expect = 3e-32
Identities = 59/231 (25%), Positives = 80/231 (34%), Gaps = 71/231 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAGEW 92
G + +PW + L CG +LI P LTAAHC++ +Y V G
Sbjct: 21 GCVAHPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH 77
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
+ Q +V + + P +IALLKLSS D + P CLP N
Sbjct: 78 QEVNLEPHV----QEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPN 127
Query: 153 VTY-DSENCVITGWGR-------------------------------------------- 167
D C ITGWG
Sbjct: 128 YVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLA 187
Query: 168 ---DS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
DS D GGPLVC + + G+ +W + C P+ PG+Y V+
Sbjct: 188 GGTDSCQGDAGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSR 235
Score = 77.3 bits (191), Expect = 4e-16
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+Y V G + Q +V + + P +IALLKLSS D +
Sbjct: 69 SYKVILGAHQEVNLEPHV----QEIEVSRLFLEPTR------KDIALLKLSSPAVITDKV 118
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
P CLP N D C ITGWG
Sbjct: 119 IPACLPSPNYVVADRTECFITGWGE 143
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 195 bits (498), Expect = 5e-59
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 35/256 (13%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
G ++ G +PW +++ CG +LI + V+TAAHC T
Sbjct: 19 GEEAVP---GSWPWQVSLQDKT---------GFHFCGGSLINENWVVTAAHCGVT---TS 63
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNH 411
V GE+D +++ Q+ +++++ + + + T+ NDI L+ L
Sbjct: 64 DVVVAGEFDQGSSSEKI------QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT 117
Query: 412 IGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTR 470
+ C P++++++ C+ TGWG ++ L++ + L+ C++
Sbjct: 118 VSAVCLPSASDDFAAGTTCVTTGWGLTRYT-NANTPDRLQQASLPLLSNTNCKKYWGT-- 174
Query: 471 LGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTP 529
K+ D+ ICA G +C GD GGPLVC+ + +T VGIVSWG S TP
Sbjct: 175 -----KIKDAMICA-GASGVSSCMGDSGGPLVCK---KNGAWTLVGIVSWGSSTCSTSTP 225
Query: 530 GVYVDVRKFKKWILDN 545
GVY V W+
Sbjct: 226 GVYARVTALVNWVQQT 241
Score = 135 bits (341), Expect = 2e-36
Identities = 57/221 (25%), Positives = 80/221 (36%), Gaps = 60/221 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G G +PW + L + CG SLI N +TAAHC + V AGE+
Sbjct: 19 GEEAVPGSWPWQVSLQDKTG---FHFCGGSLINENWVVTAAHCGVTT-SDVVVAGEFDQG 74
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
E+ Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP + +
Sbjct: 75 SSSEKI----QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF 130
Query: 156 -DSENCVITGWG---------------------------------------------RDS 169
CV TGWG S
Sbjct: 131 AAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSS 190
Query: 170 --ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
D GGPLVC + VGI +W + PG+Y
Sbjct: 191 CMGDSGGPLVCKKNG---AWTLVGIVSWGSSTCSTSTPGVY 228
Score = 89.6 bits (223), Expect = 2e-20
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ V AGE+ E+ Q+ + V + Y++ T+ N+I LLKLS+ F +
Sbjct: 63 SDVVVAGEFDQGSSSEKI----QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTV 118
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
+CLP + + CV TGWG
Sbjct: 119 SAVCLPSASDDFAAGTTCVTTGWGL 143
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 194 bits (495), Expect = 1e-58
Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 37/249 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
+ PW + +L + CG +++ + V+TAA CV+ +DI + G
Sbjct: 10 TKEPWAVGVLVD----------EKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSY 59
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNH-IGLACTPN 419
T +++ + T+ N+ A+I + P + + P+
Sbjct: 60 RTTK----------GTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPS 109
Query: 420 SAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLH 478
+ D + +V+GWG F Y L + +V R C++Q ++ ++
Sbjct: 110 LLYDPEPDTSVLVSGWGSTNFK-SLEYSGDLMEANFTVVDRKSCEEQYKQIEADK--YIY 166
Query: 479 DSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDV 535
D CA GD G P V T VG+ S+ S+ P V++ V
Sbjct: 167 DGVFCAGGEYDE--TYIGYGDAGDPAVQN-------GTLVGVASYISSMPSEFPSVFLRV 217
Query: 536 RKFKKWILD 544
+ I D
Sbjct: 218 GYYVLDIKD 226
Score = 120 bits (303), Expect = 3e-31
Identities = 40/252 (15%), Positives = 71/252 (28%), Gaps = 82/252 (32%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT--YSVAAGEWF 93
G+ + + PW + + + CG S++ N +TAA CV S+ G +
Sbjct: 4 GKKSDITKEPWAVGVLVDE----KPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSY 59
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDY-IHPICLPDWN 152
+ + Y T++NN A+++ I DD I LP
Sbjct: 60 RT-------TKGTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLL 111
Query: 153 VT-YDSENCVITGW---------------------------------------------- 165
+ +++GW
Sbjct: 112 YDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFC 171
Query: 166 ------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY-DVTYSVAAG 216
D G P V VG+A++ + P ++ V Y V
Sbjct: 172 AGGEYDETYIGYGDAGDPAVQNGT-------LVGVASYISSMPSEFPSVFLRVGYYV--- 221
Query: 217 EWFINGIVEEEL 228
I I+ ++
Sbjct: 222 LD-IKDIISGKV 232
Score = 73.4 bits (181), Expect = 6e-15
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDY-I 269
S+ G + + + Y T++NN A+++ I DD
Sbjct: 51 ISIHYGSSYRT-------TKGTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTT 102
Query: 270 HPICLPDWNVT-YDSENCVITGWGR 293
I LP + +++GWG
Sbjct: 103 KKIELPSLLYDPEPDTSVLVSGWGS 127
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 192 bits (490), Expect = 7e-58
Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 35/261 (13%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G GR + +PW +++ S + CG +LI VMTAAHCV++
Sbjct: 1 VVG-GRVAQP---NSWPWQISLQYK------SGSSYYHTCGGSLIRQGWVMTAAHCVDS- 49
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDFP 405
+V GE N E Q TV+ ++IH + + V DIAL+ L+
Sbjct: 50 -ARTWRVVLGEH-----NLNTNEG-KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQ 102
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ + + LA P S + ++ C +TGWGK G G +LK+ + V C
Sbjct: 103 ASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTG--GPLSDSLKQAWLPSVDHATCSS 160
Query: 465 QLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSW--GI 522
G + + +CA GG C GD GGPL CQ + G+ S+
Sbjct: 161 ---SGWWGS--TVKTTMVCA-GGGANSGCNGDSGGPLNCQ---VNGSYYVHGVTSFVSSS 211
Query: 523 GCG-SDTPGVYVDVRKFKKWI 542
GC S P V+ V + W+
Sbjct: 212 GCNASKKPTVFTRVSAYISWM 232
Score = 133 bits (338), Expect = 4e-36
Identities = 54/226 (23%), Positives = 82/226 (36%), Gaps = 61/226 (26%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
GR +PW + L Y + Y CG SLI +TAAHCV T+ V GE +N
Sbjct: 4 GRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWRVVLGEHNLN 63
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDDYIHPICLPDWNV 153
+EQ V V IH ++++ + IALL+L++ + + LP N
Sbjct: 64 TNE----GKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQ 119
Query: 154 TY-DSENCVITGWGRDSADG---------------------------------------- 172
++ C ITGWG+ S G
Sbjct: 120 ILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGA 179
Query: 173 --------GGPLVCPSKEDPTTFFQVGIAAW--SVVC-TPDMPGLY 207
GGPL C +++ G+ ++ S C P ++
Sbjct: 180 NSGCNGDSGGPLNCQVNG---SYYVHGVTSFVSSSGCNASKKPTVF 222
Score = 81.1 bits (201), Expect = 1e-17
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDD 267
T+ V GE +N +E Q V V IH ++++ + IALL+L++ +
Sbjct: 52 TWRVVLGEHNLNTNEGKE----QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNS 107
Query: 268 YIHPICLPDWNVTY-DSENCVITGWGR 293
+ LP N ++ C ITGWG+
Sbjct: 108 AVQLAALPPSNQILPNNNPCYITGWGK 134
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 193 bits (493), Expect = 9e-58
Identities = 48/284 (16%), Positives = 92/284 (32%), Gaps = 54/284 (19%)
Query: 273 CLPDWNVTYDSENC---------VITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTEN 323
C + + D + C V+T R + PW + + ++
Sbjct: 28 CAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL---QDLPWQVKLTNSE---------G 75
Query: 324 VFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIY 383
CG +I + V+T A C +I V+ NRT ++P ++ ++
Sbjct: 76 KDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYF------NRTSQDP---LMIKITHVH 124
Query: 384 IHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEE----YDDQNCIVTGWGKDKF 439
+H ++A ND++L+ L++P CTP +++GW ++
Sbjct: 125 VHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNG- 183
Query: 440 GVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGG 499
++L V LV C Q L + C A G
Sbjct: 184 ---TDLGNSLTTRPVTLVEGEECGQVLN-------VTVTTRTYCERSS--VAAMHWMDGS 231
Query: 500 PLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
+ + R + G++ G + V ++ W
Sbjct: 232 VVTRE---HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 271
Score = 142 bits (360), Expect = 1e-38
Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 60/227 (26%)
Query: 28 YDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSV 87
+ R + PW + L + CG +I N LT A C +V
Sbjct: 48 ACGVLTSEKRAPDLQDLPWQVKLTNSEG---KDFCGGVIIRENFVLTTAKCSLLHRNITV 104
Query: 88 AAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPIC 147
+ ++ + V +H Y + EN+++LL+L I P+C
Sbjct: 105 KTYFNRTS-------QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVC 157
Query: 148 LPDWN----VTYDSENCVITGWGRDSA--------------------------------- 170
P+ + + +++GW R+
Sbjct: 158 TPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYC 217
Query: 171 ----------DGGGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY 207
G + + ++F G+ V L
Sbjct: 218 ERSSVAAMHWMDGSVVTREHRG---SWFLTGVLGSQPVGGQAHMVLV 261
Score = 86.3 bits (214), Expect = 6e-19
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN----VTYDSE 284
++ + V +H Y + EN+++LL+L I P+C P+ + +
Sbjct: 113 QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRT 172
Query: 285 NCVITGWGRDSAET 298
+++GW R+ +
Sbjct: 173 RGLLSGWARNGTDL 186
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 192 bits (489), Expect = 1e-57
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 37/263 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G D+ +PW +++ + + CG TL+ V+TAAHC+++
Sbjct: 1 VVG-GEDARP---NSWPWQVSLQYDSSGQWR------HTCGGTLVDQSWVLTAAHCISS- 49
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDFP 405
+V G + + EP VS++ +H+++ + + NDIAL+ L P
Sbjct: 50 -SRTYRVVLGRH-----SLSTNEP-GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASP 102
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ + I L C P + ++ C VTGWG+ + G L++ ++ +V C +
Sbjct: 103 VSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTN--GASPDILQQGQLLVVDYATCSK 160
Query: 465 QLRKTRLGGVFKLHDSFICA--SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG- 521
G + + ICA G +C GD GGPL CQ N ++ GIVS+G
Sbjct: 161 ---PGWWGS--TVKTNMICAGGDGI--ISSCNGDSGGPLNCQGAN--GQWQVHGIVSFGS 211
Query: 522 -IGCGS-DTPGVYVDVRKFKKWI 542
+GC P V+ V + WI
Sbjct: 212 SLGCNYYHKPSVFTRVSNYIDWI 234
Score = 133 bits (337), Expect = 7e-36
Identities = 51/227 (22%), Positives = 78/227 (34%), Gaps = 61/227 (26%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G + +PW + L Y CG +L+ + LTAAHC+ TY V G ++
Sbjct: 4 GEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRHSLS 63
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETL--ENNIALLKLSSNIDFDDYIHPICLPDWNV 153
V + +H ++++ L N+IALLKL+S + D I CLP
Sbjct: 64 TNEPGS----LAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGT 119
Query: 154 TY-DSENCVITGWG---------------------------------------------- 166
++ C +TGWG
Sbjct: 120 ILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDG 179
Query: 167 -RDS--ADGGGPLVCPSKEDPTTFFQVGIAAW--SVVC-TPDMPGLY 207
S D GGPL C + GI ++ S+ C P ++
Sbjct: 180 IISSCNGDSGGPLNCQGANG--QWQVHGIVSFGSSLGCNYYHKPSVF 224
Score = 80.3 bits (199), Expect = 3e-17
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETL--ENNIALLKLSSNIDFDD 267
TY V G ++ V + +H ++++ L N+IALLKL+S + D
Sbjct: 52 TYRVVLGRHSLSTNEPGS----LAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTD 107
Query: 268 YIHPICLPDWNVTY-DSENCVITGWGR 293
I CLP ++ C +TGWGR
Sbjct: 108 KIQLGCLPAAGTILPNNYVCYVTGWGR 134
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 194 bits (494), Expect = 1e-57
Identities = 46/290 (15%), Positives = 90/290 (31%), Gaps = 48/290 (16%)
Query: 264 DFDDYIHPICLPDWNVTYDSENCVITGWGRDS------AETFFGEYPWMMAILTNKINKD 317
+ C + + D + CV + PW + + ++
Sbjct: 60 PGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSE---- 115
Query: 318 GSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQER 377
CG +I + V+T A C +I V+ NRT ++P
Sbjct: 116 -----GKDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYF------NRTSQDP---LMI 159
Query: 378 TVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN----SAEEYDDQNCIVTG 433
++ +++H ++A ND++L+ L++P CTP +++G
Sbjct: 160 KITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSG 219
Query: 434 WGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDAC 493
W ++ ++L V LV C Q L + C A
Sbjct: 220 WARNG----TDLGNSLTTRPVTLVEGEECGQVLN-------VTVTTRTYCERSS--VAAM 266
Query: 494 KGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWI 542
G + + R + G++ G + V ++ W
Sbjct: 267 HWMDGSVVTRE---HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 312
Score = 140 bits (354), Expect = 2e-37
Identities = 33/219 (15%), Positives = 59/219 (26%), Gaps = 60/219 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
R + PW + L + CG +I N LT A C +V +
Sbjct: 97 KRAPDLQDLPWQVKLTNSEG---KDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTS 153
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT- 154
+ + V +H Y + EN+++LL+L I P+C P+ +
Sbjct: 154 Q-------DPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAE 206
Query: 155 ---YDSENCVITGWGRDSA----------------------------------------- 170
+++GW R+
Sbjct: 207 HLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSSVAAM 266
Query: 171 --DGGGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLY 207
G + + ++F G+ V L
Sbjct: 267 HWMDGSVVTREHRG---SWFLTGVLGSQPVGGQAHMVLV 302
Score = 85.1 bits (211), Expect = 2e-18
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT----YDSE 284
++ + V +H Y + EN+++LL+L I P+C P+ +
Sbjct: 154 QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRT 213
Query: 285 NCVITGWGRDSAET 298
+++GW R+ +
Sbjct: 214 RGLLSGWARNGTDL 227
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 191 bits (488), Expect = 2e-57
Identities = 66/261 (25%), Positives = 101/261 (38%), Gaps = 39/261 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NN 346
I G G++ + P+M +I CG LI P V+TAAHC
Sbjct: 3 IIG-GKEVSP---HSRPFMASIQYG----------GHHVCGGVLIDPQWVLTAAHCQYRF 48
Query: 347 IPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPF 406
V G ++ + E Q + + + NDI L+ L
Sbjct: 49 TKGQSPTVVLGA-----HSLSKNEA-SKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAA 102
Query: 407 PVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
+ H+ + + C VTGWG R TL++V V ++ R +C
Sbjct: 103 KLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPD-SLRPSDTLREVTVTVLSRKLCN--- 158
Query: 467 RKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG 523
++ G + +CA G +D+CKGD GGPL+C + IVS G
Sbjct: 159 SQSYYNGDPFITKDMVCAGDAKGQ--KDSCKGDAGGPLIC-------KGVFHAIVSGGHE 209
Query: 524 CGS-DTPGVYVDV-RKFKKWI 542
CG PG+Y + +K++ WI
Sbjct: 210 CGVATKPGIYTLLTKKYQTWI 230
Score = 120 bits (304), Expect = 2e-31
Identities = 42/231 (18%), Positives = 70/231 (30%), Gaps = 72/231 (31%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAAG 90
I G+ P+M + Y + CG LI P LTAAHC + +V G
Sbjct: 4 IGGKEVSPHSRPFMASIQYGG----HHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLG 59
Query: 91 EWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPD 150
++ + E +Q ++ +++ N+I L+KL + + ++ + +
Sbjct: 60 AHSLS---KNE-ASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRS 115
Query: 151 WNVTYDSENCVITGW--------------------------------------------- 165
C +TGW
Sbjct: 116 KTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVC 175
Query: 166 ------GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
+DS D GGPL+C I + C PG+Y
Sbjct: 176 AGDAKGQKDSCKGDAGGPLICK-------GVFHAIVSGGHECGVATKPGIY 219
Score = 82.2 bits (204), Expect = 8e-18
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+V G ++ + E +Q ++ +++ N+I L+KL + + ++
Sbjct: 54 PTVVLGAHSLS---KNE-ASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVK 109
Query: 271 PICLPDWNVTYDSENCVITGWGR 293
+ + C +TGWG
Sbjct: 110 MLHIRSKTSLRSGTKCKVTGWGA 132
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 200 bits (510), Expect = 2e-57
Identities = 76/267 (28%), Positives = 106/267 (39%), Gaps = 43/267 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G+ + G+ PW +AI + CG I ++TAAHC+
Sbjct: 322 IVG-GKRAQL---GDLPWQVAIKDA----------SGITCGGIYIGGCWILTAAHCLRAS 367
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
++ D + V +I HEN+ A T NDIALI +
Sbjct: 368 KTHRYQIWTTVVD-----WIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGN 422
Query: 408 ----VKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
AC P S + + CIV+GWG++K + +L+ EVKL+ C
Sbjct: 423 KKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREK---DNERVFSLQWGEVKLISN--C 477
Query: 463 QQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVS 519
+ CA G DACKGD GGPLVC + + G+VS
Sbjct: 478 SKFYGNRF------YEKEMECAGTYDGS--IDACKGDSGGPLVCM--DANNVTYVWGVVS 527
Query: 520 WGIGCG-SDTPGVYVDVRKFKKWILDN 545
WG CG + PGVY V + WI +
Sbjct: 528 WGENCGKPEFPGVYTKVANYFDWISYH 554
Score = 132 bits (334), Expect = 3e-33
Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 63/228 (27%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ G+ G+ PW + + CG IG LTAAHC++ Y +
Sbjct: 323 VGGKRAQLGDLPWQVAIKDASG----ITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTV 378
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDD----YIHPIC 147
+ +L+ V + H NY+ T +N+IAL+++ + + D P C
Sbjct: 379 V---DWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPAC 435
Query: 148 LPDWNVTY-DSENCVITGWGRDSADG---------------------------------- 172
+P + ++ C+++GWGR+ +
Sbjct: 436 VPWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLISNCSKFYGNRFYEKEMECAGT 495
Query: 173 ------------GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
GGPLVC + + G+ +W C P+ PG+Y
Sbjct: 496 YDGSIDACKGDSGGPLVCMDANN--VTYVWGVVSWGENCGKPEFPGVY 541
Score = 79.2 bits (195), Expect = 9e-16
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDD-- 267
Y + + +L+ V + H NY+ T +N+IAL+++ + + D
Sbjct: 371 RYQIWTTVV---DWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCE 427
Query: 268 --YIHPICLPDWNVTY-DSENCVITGWGR 293
P C+P + ++ C+++GWGR
Sbjct: 428 LPRSIPACVPWSPYLFQPNDTCIVSGWGR 456
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 190 bits (484), Expect = 5e-57
Identities = 62/257 (24%), Positives = 104/257 (40%), Gaps = 31/257 (12%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
G D+ + W +++ K CG +LI P V+TA HC++
Sbjct: 2 GEDAVP---YSWSWQVSLQYEKDGA------FHHTCGGSLIAPDWVVTAGHCIST--SRT 50
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDFPFPVK 409
+V GE+D ++ +++H + + V NDIAL+ L +
Sbjct: 51 YQVVLGEYDRSVLEGSE----QVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 106
Query: 410 NHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRK 468
+ + LA P + + ++ C ++GWG+ G G L++ + V C Q
Sbjct: 107 DKVQLANLPPAGDILPNEAPCYISGWGRLYTG--GPLPDKLQQALLPTVDYEHCSQ---W 161
Query: 469 TRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSW--GIGCGS 526
G + + +CA GG + C GD GGPL C + + G+ S+ GC +
Sbjct: 162 DWWGI--TVKKTMVCA-GGDTRSGCNGDSGGPLNCPAAD--GSWQVHGVTSFVSAFGCNT 216
Query: 527 -DTPGVYVDVRKFKKWI 542
P V+ V F WI
Sbjct: 217 IKKPTVFTRVSAFIDWI 233
Score = 137 bits (348), Expect = 2e-37
Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 58/227 (25%)
Query: 35 SGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFI 94
+G + + W + L Y K + CG SLI P+ +TA HC+ TY V GE+
Sbjct: 1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDR 60
Query: 95 NGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDDYIHPICLPDWN 152
+ V E E+ + D+ +HP +++ + IAL+KLS + D + LP
Sbjct: 61 S--VLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAG 118
Query: 153 VTY-DSENCVITGWGRDSADG--------------------------------------- 172
+ C I+GWGR G
Sbjct: 119 DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGD 178
Query: 173 ---------GGPLVCPSKEDPTTFFQVGIAAW--SVVC-TPDMPGLY 207
GGPL CP+ + ++ G+ ++ + C T P ++
Sbjct: 179 TRSGCNGDSGGPLNCPAADG--SWQVHGVTSFVSAFGCNTIKKPTVF 223
Score = 82.3 bits (204), Expect = 7e-18
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDD 267
TY V GE+ + V E E+ + D+ +HP +++ + IAL+KLS + D
Sbjct: 50 TYQVVLGEYDRS--VLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGD 107
Query: 268 YIHPICLPDWNVTY-DSENCVITGWGR 293
+ LP + C I+GWGR
Sbjct: 108 KVQLANLPPAGDILPNEAPCYISGWGR 134
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 188 bits (481), Expect = 1e-56
Identities = 61/247 (24%), Positives = 95/247 (38%), Gaps = 38/247 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
WM+++ N CG +LI V+TA C + + D + G D
Sbjct: 9 TNIGWMVSLRYR----------NKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHD 58
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ Q VSQ+ +D+ L+ L P + + + PN
Sbjct: 59 VHGRGDEKCK----QVLNVSQLVYGPE------GSDLVLMKLARPAVLDDFVSTIDLPNY 108
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ +C V GWG Y L+ + ++ C Q R G L++
Sbjct: 109 GSTIPEKTSCSVYGWGYTG---LINYDGLLRVAHLYIMGNEKCSQHHR-----GKVTLNE 160
Query: 480 SFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDV 535
S ICA G C+GD GGPLVC+ + +G++ G GC + PG++V V
Sbjct: 161 SEICAGAEKIG--SGPCEGDYGGPLVCE---QHKMRMVLGVIVPGRGCAIPNRPGIFVRV 215
Query: 536 RKFKKWI 542
+ KWI
Sbjct: 216 AYYAKWI 222
Score = 122 bits (308), Expect = 6e-32
Identities = 47/224 (20%), Positives = 74/224 (33%), Gaps = 69/224 (30%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV--TYSVAAGEWFINGIVE 99
WM+ L Y CG SLI + LTA C Y G ++G +
Sbjct: 9 TNIGWMVSLRYRN----KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGD 64
Query: 100 EELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT-YDSE 158
E+ + Q +V + P +++ L+KL+ DD++ I LP++ T +
Sbjct: 65 EKCK--QVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKT 116
Query: 159 NCVITGWGR-----------------------------------------------DS-- 169
+C + GWG
Sbjct: 117 SCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCE 176
Query: 170 ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
D GGPLVC + +G+ C P+ PG++ V Y
Sbjct: 177 GDYGGPLVCEQHK---MRMVLGVIVPGRGCAIPNRPGIFVRVAY 217
Score = 78.8 bits (195), Expect = 1e-16
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
Y G ++G +E+ + Q +V + P +++ L+KL+ DD++
Sbjct: 49 DYEAWLGIHDVHGRGDEKCK--QVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFV 100
Query: 270 HPICLPDWNVT-YDSENCVITGWGR 293
I LP++ T + +C + GWG
Sbjct: 101 STIDLPNYGSTIPEKTSCSVYGWGY 125
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 188 bits (480), Expect = 2e-56
Identities = 65/263 (24%), Positives = 107/263 (40%), Gaps = 38/263 (14%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G ++ +P +++ S + CG TLI + VMTAAHCV+
Sbjct: 1 VVG-GTEAQR---NSWPSQISLQYR------SGSSWAHTCGGTLIRQNWVMTAAHCVDR- 49
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF--NDIALIILDFP 405
+V GE N Q V +I +H + V DIAL+ L
Sbjct: 50 -ELTFRVVVGEH-----NLNQNNG-TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQS 102
Query: 406 FPVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQ 464
+ +++ L P + ++ C +TGWG + G+ TL++ + V +C
Sbjct: 103 VTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTN--GQLAQTLQQAYLPTVDYAICSS 160
Query: 465 QLRKTRLGGVFKLHDSFICA--SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG- 521
+ G + +S +CA G + C+GD GGPL C ++ G+ S+
Sbjct: 161 ---SSYWGS--TVKNSMVCAGGDGV--RSGCQGDSGGPLHCL---VNGQYAVHGVTSFVS 210
Query: 522 -IGCGS-DTPGVYVDVRKFKKWI 542
+GC P V+ V + WI
Sbjct: 211 RLGCNVTRKPTVFTRVSAYISWI 233
Score = 134 bits (339), Expect = 3e-36
Identities = 50/227 (22%), Positives = 80/227 (35%), Gaps = 62/227 (27%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G +P + L Y + CG +LI N +TAAHCV ++T+ V GE +N
Sbjct: 4 GTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLN 63
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDDYIHPICLPDWNV 153
E Q V + +HP ++T+ + IALL+L+ ++ + Y+ LP
Sbjct: 64 QNNGTE----QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGT 119
Query: 154 TY-DSENCVITGWG---------------------------------------------- 166
++ C ITGWG
Sbjct: 120 ILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDG 179
Query: 167 -RDS--ADGGGPLVCPSKEDPTTFFQVGIAAW--SVVC-TPDMPGLY 207
R D GGPL C + G+ ++ + C P ++
Sbjct: 180 VRSGCQGDSGGPLHCLVNG---QYAVHGVTSFVSRLGCNVTRKPTVF 223
Score = 81.9 bits (203), Expect = 1e-17
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENN--IALLKLSSNIDFDD 267
T+ V GE +N E Q V + +HP ++T+ + IALL+L+ ++ +
Sbjct: 52 TFRVVVGEHNLNQNNGTE----QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS 107
Query: 268 YIHPICLPDWNVTY-DSENCVITGWGR 293
Y+ LP ++ C ITGWG
Sbjct: 108 YVQLGVLPRAGTILANNSPCYITGWGL 134
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 186 bits (474), Expect = 1e-55
Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 41/249 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV--NNIPVTDIKVRGGE 358
G PW +++ + CG +L+ ++TA C ++P+T +V G
Sbjct: 7 GNSPWTVSLRNRQ---------GQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 359 WDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTP 418
N EP Q V+++ + + + L+ L+ + + L C P
Sbjct: 58 LF---QNPQHGEP-SLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLP 107
Query: 419 NSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKL 477
C + GWG+ K + L + ++ C + R ++
Sbjct: 108 PEWYVVPPGTKCEIAGWGETK---GTGNDTVLNVALLNVISNQECNIKHRG-------RV 157
Query: 478 HDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYV 533
+S +C AC+GD GGPL C + + GI+ C P V+
Sbjct: 158 RESEMCTEGLLAP--VGACEGDYGGPLACF---THNSWVLEGIIIPNRVCARSRWPAVFT 212
Query: 534 DVRKFKKWI 542
V F WI
Sbjct: 213 RVSVFVDWI 221
Score = 123 bits (312), Expect = 2e-32
Identities = 47/224 (20%), Positives = 64/224 (28%), Gaps = 68/224 (30%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT----YSVAAGEWFINGI 97
G PW + L + CG SL+ LTA C Y V G F N
Sbjct: 7 GNSPWTVSLRNRQG---QHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQ 63
Query: 98 VEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY-D 156
E QR V + P+ + + LLKL ++ + + ICLP
Sbjct: 64 HGEP--SLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLPPEWYVVPP 115
Query: 157 SENCVITGWGRDSADG-------------------------------------------- 172
C I GWG G
Sbjct: 116 GTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACE 175
Query: 173 ---GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY-DVTY 211
GGPL C ++ GI + VC P ++ V+
Sbjct: 176 GDYGGPLAC---FTHNSWVLEGIIIPNRVCARSRWPAVFTRVSV 216
Score = 78.0 bits (193), Expect = 2e-16
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
Y V G F N E QR V + P+ + + LLKL ++ + +
Sbjct: 50 GYEVWLGTLFQNPQHGEP--SLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRV 101
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
ICLP C I GWG
Sbjct: 102 ALICLPPEWYVVPPGTKCEIAGWGE 126
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 184 bits (469), Expect = 5e-55
Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M ++ N CG L+ V++AAHC+ + ++V G
Sbjct: 10 HARPYMASVQLN----------GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGA-- 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
++ + EP + V + H + + T+ +D+ L+ L + +
Sbjct: 58 ---HSLSQPEP-SKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 421 AEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ C V GWG GR +L+ V + ++ R C + R + +
Sbjct: 114 DRDVAPGTLCDVAGWGIVNHA--GRRPDSLQHVLLPVLDRATCNR-----RTHHDGAITE 166
Query: 480 SFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDVRK 537
+CA +D+CKGD GGPLVC G+V+ G CG+ PG+Y V
Sbjct: 167 RLMCA-ESNRRDSCKGDAGGPLVCG-------GVLEGVVTSGSRVCGNRKKPGIYTRVAS 218
Query: 538 FKKWI 542
+ WI
Sbjct: 219 YAAWI 223
Score = 119 bits (302), Expect = 4e-31
Identities = 44/227 (19%), Positives = 71/227 (31%), Gaps = 68/227 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ GR P+M + CG L+ L+AAHC++ D V G
Sbjct: 2 LGGREAEAHARPYMASVQLNG----AHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGA 57
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
++ + ++ DVL HP+ +T+++++ LL+LS + P+
Sbjct: 58 HSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 152 NVTY-DSENCVITGWGRDSADG-------------------------------------- 172
+ C + GWG + G
Sbjct: 114 DRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAES 173
Query: 173 ----------GGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
GGPLVC G+ S VC PG+Y
Sbjct: 174 NRRDSCKGDAGGPLVCGG-------VLEGVVTSGSRVCGNRKKPGIY 213
Score = 78.0 bits (193), Expect = 1e-16
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
V G ++ + ++ DVL HP+ +T+++++ LL+LS +
Sbjct: 50 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAV 105
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
P+ + C + GWG
Sbjct: 106 RPLPWQRVDRDVAPGTLCDVAGWGI 130
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 184 bits (469), Expect = 5e-55
Identities = 53/245 (21%), Positives = 83/245 (33%), Gaps = 44/245 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
++P++ +I CG LI VMTAA C + V G
Sbjct: 10 RQFPFLASIQNQ----------GRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGA-- 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ RE ++ ++ + ND+ L+ LD + + + + P
Sbjct: 58 ---YDLRRRER-QSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQ 113
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
C V GWG + G GR + V V + P + C
Sbjct: 114 NATVEAGTRCQVAGWGSQRSG--GRLSRFPRFVNVTVTPEDQC---------------RP 156
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
+ +C G C GDGG PLVC+ G+ S+ +G P + V
Sbjct: 157 NNVCT-GVLTRRGGICNGDGGTPLVCE-------GLAHGVASFSLGPCGRGPDFFTRVAL 208
Query: 538 FKKWI 542
F+ WI
Sbjct: 209 FRDWI 213
Score = 122 bits (308), Expect = 5e-32
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 58/209 (27%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGEWFINGIVE 99
+FP++ + R+ CG +LI +TAA C Q +V G + +
Sbjct: 10 RQFPFLASIQNQGRHF----CGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLR---R 62
Query: 100 EELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT-YDSE 158
E + ++ + Y + N++ LL+L + + + LP N T
Sbjct: 63 RE-RQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGT 121
Query: 159 NCVITGWGRDSADG----------------------------------------GGPLVC 178
C + GWG + G G PLVC
Sbjct: 122 RCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGDGGTPLVC 181
Query: 179 PSKEDPTTFFQVGIAAWSVVCTPDMPGLY 207
G+A++S+ P +
Sbjct: 182 E-------GLAHGVASFSLGPCGRGPDFF 203
Score = 77.2 bits (191), Expect = 3e-16
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+V G + + E + ++ + Y + N++ LL+L + +
Sbjct: 50 VSTVVLGAYDLR---RRE-RQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSV 105
Query: 270 HPICLPDWNVT-YDSENCVITGWGR 293
+ LP N T C + GWG
Sbjct: 106 TILPLPLQNATVEAGTRCQVAGWGS 130
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 182 bits (465), Expect = 2e-54
Identities = 63/261 (24%), Positives = 97/261 (37%), Gaps = 41/261 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G ++ +P A+ + +++ CG +LI P ++TAAHC++
Sbjct: 1 IVG-GVEAVP---NSWPHQAALFID----------DMYFCGGSLISPEWILTAAHCMDG- 45
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+ V G +N + E + +HEN+ + + NDIA+I L P
Sbjct: 46 -AGFVDVVLGA-----HNIREDEATQ-VTIQSTDFTVHENYNSFVISNDIAVIRLPVPVT 98
Query: 408 VKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR 467
+ I P S + TGWG G L++V+V ++ C
Sbjct: 99 LTAAIATVGLP-STDVGVGTVVTPTGWGLPSDSALG-ISDVLRQVDVPIMSNADCDA--- 153
Query: 468 KTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-- 525
G V D IC + C GD GGPL GI S+G G
Sbjct: 154 --VYGIV---TDGNICIDSTGGKGTCNGDSGGPLNYN-------GLTYGITSFGAAAGCE 201
Query: 526 SDTPGVYVDVRKFKKWILDNS 546
+ P + V F WI +
Sbjct: 202 AGYPDAFTRVTYFLDWIQTQT 222
Score = 138 bits (349), Expect = 1e-37
Identities = 44/221 (19%), Positives = 63/221 (28%), Gaps = 65/221 (29%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G +P LF + CG SLI P LTAAHC+ V G I
Sbjct: 4 GVEAVPNSWPHQAALFIDD----MYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIR 59
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
E+ + D +H NY++ + N+IA+++L + I + LP +
Sbjct: 60 ----EDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTD-VG 114
Query: 156 DSENCVITGWGRDSADG------------------------------------------- 172
TGWG S
Sbjct: 115 VGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDSTGGKGTC 174
Query: 173 ----GGPLVCPSKEDPTTFFQVGIAAWSVV--CTPDMPGLY 207
GGPL GI ++ C P +
Sbjct: 175 NGDSGGPLNYNGL-------TYGITSFGAAAGCEAGYPDAF 208
Score = 86.8 bits (216), Expect = 1e-19
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
V G I E+ + D +H NY++ + N+IA+++L + I
Sbjct: 48 FVDVVLGAHNIR----EDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAI 103
Query: 270 HPICLPDWNVTYDSENCVITGWGRDS 295
+ LP + TGWG S
Sbjct: 104 ATVGLPSTD-VGVGTVVTPTGWGLPS 128
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 182 bits (465), Expect = 2e-54
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 43/259 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G + + GE PW ++ + N CG T++ ++TAAHC+
Sbjct: 1 IVG-GYNCKD---GEVPWQALLINEE---------NEGFCGGTILSEFYILTAAHCLYQ- 46
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
KVR G+ N E V + H F +T DIA++ L P
Sbjct: 47 -AKRFKVRVGD-----RNTEQEEGGE-AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPIT 99
Query: 408 VKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR 467
+ ++ A P +A C+++GWG Y L+ ++ ++ + C+
Sbjct: 100 FRMNVAPASLP-TAPPATGTKCLISGWGNTASS-GADYPDELQCLDAPVLSQAKCEASYP 157
Query: 468 KTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGC 524
K+ + C GG +D+C+GD GGP+VC G+VSWG GC
Sbjct: 158 -------GKITSNMFCVGFLEGG--KDSCQGDSGGPVVC-------NGQLQGVVSWGDGC 201
Query: 525 GS-DTPGVYVDVRKFKKWI 542
+ PGVY V + KWI
Sbjct: 202 AQKNKPGVYTKVYNYVKWI 220
Score = 127 bits (322), Expect = 7e-34
Identities = 53/222 (23%), Positives = 78/222 (35%), Gaps = 65/222 (29%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G N GE PW +L + CG +++ LTAAHC+ + V G+
Sbjct: 4 GYNCKDGEVPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTE 60
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
EE E +V V H ++ ET + +IA+L+L + I F + P LP
Sbjct: 61 --QEEG--GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPA- 115
Query: 156 DSENCVITGWG-----------------------------------------------RD 168
C+I+GWG +D
Sbjct: 116 TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKD 175
Query: 169 S--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
S D GGP+VC G+ +W C + PG+Y
Sbjct: 176 SCQGDSGGPVVC-------NGQLQGVVSWGDGCAQKNKPGVY 210
Score = 79.1 bits (196), Expect = 7e-17
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVI 288
E +V V H ++ ET + +IA+L+L + I F + P LP C+I
Sbjct: 64 GGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPA-TGTKCLI 122
Query: 289 TGWGR 293
+GWG
Sbjct: 123 SGWGN 127
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 181 bits (462), Expect = 7e-54
Identities = 60/261 (22%), Positives = 94/261 (36%), Gaps = 43/261 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G GR+ P+M ++ N CG L+ P V+TAAHC+
Sbjct: 1 IIG-GREVIP---HSRPYMASLQRN----------GSHLCGGVLVHPKWVLTAAHCLAQR 46
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-EAKTVFNDIALIILDFPF 406
+++ G + P + H + + ND+AL+ LD
Sbjct: 47 M-AQLRLVLGLH--------TLDS-PGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKV 96
Query: 407 PVKNHIGLACTPNSAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQ 465
I P+ + C + GWG G GR L++++++++ +C
Sbjct: 97 KPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQG--GRLSRVLRELDLQVLDTRMCN-- 152
Query: 466 LRKTRLGGVFKLHDSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG 523
G L S +C + Q CKGD GGPLVC G++S+
Sbjct: 153 -NSRFWNG--SLSPSMVCL-AADSKDQAPCKGDSGGPLVCG-----KGRVLAGVLSFSSR 203
Query: 524 -CGS-DTPGVYVDVRKFKKWI 542
C P V V + WI
Sbjct: 204 VCTDIFKPPVATAVAPYVSWI 224
Score = 120 bits (304), Expect = 2e-31
Identities = 47/229 (20%), Positives = 67/229 (29%), Gaps = 71/229 (31%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT-YSVAAGEW 92
I GR P+M L ++ CG L+ P LTAAHC+ + + G
Sbjct: 2 IGGREVIPHSRPYMASLQRNGSHL----CGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLH 57
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNY-STETLENNIALLKLSSNIDFDDYIHPICLPDW 151
++ + HP Y LEN++ALL+L + I P+ LP
Sbjct: 58 TLDS-------PGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSK 110
Query: 152 NVTY-DSENCVITGWGRDSADG-------------------------------------- 172
C + GWG G
Sbjct: 111 RQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAA 170
Query: 173 ------------GGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
GGPLVC G+ ++ S VC P +
Sbjct: 171 DSKDQAPCKGDSGGPLVCGKG-----RVLAGVLSFSSRVCTDIFKPPVA 214
Score = 79.2 bits (196), Expect = 7e-17
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNY-STETLENNIALLKLSSNIDFDDYI 269
+ G ++ + HP Y LEN++ALL+L + I
Sbjct: 50 LRLVLGLHTLDS-------PGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTI 102
Query: 270 HPICLPDWNVTY-DSENCVITGWGR 293
P+ LP C + GWG
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGL 127
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 180 bits (460), Expect = 1e-53
Identities = 64/245 (26%), Positives = 95/245 (38%), Gaps = 37/245 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M ++ +CG LI V+TAAHC + I V G
Sbjct: 10 HSRPYMAYLMIWDQKSL-------KRCGGFLIRDDFVLTAAHCWGS----SINVTLGA-- 56
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N ++EP Q V + H + K NDI L+ L+ + P++
Sbjct: 57 ---HNIKEQEP-TQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSN 112
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ Q C V GWG + G++ TL++V++ + C+ LR +
Sbjct: 113 KAQVKPGQTCSVAGWG--QTAPLGKHSHTLQEVKMTVQEDRKCESDLRH------YYDST 164
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
+C G P + + KGD GGPLVC GIVS+G G P V
Sbjct: 165 IELCV-GDPEIKKTSFKGDSGGPLVCN-------KVAQGIVSYGRNNG-MPPRACTKVSS 215
Query: 538 FKKWI 542
F WI
Sbjct: 216 FVHWI 220
Score = 117 bits (295), Expect = 3e-30
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G P+M +CG LI + LTAAHC + + +V G
Sbjct: 2 IGGHEAKPHSRPYM-AYLMIWDQKSLKRCGGFLIRDDFVLTAAHC--WGSSINVTLGAHN 58
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
I E+E +Q V HP Y+ + N+I LL+L + P+ LP
Sbjct: 59 IK---EQE-PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKA 114
Query: 154 TYDS-ENCVITGWGRDSADGGGP 175
+ C + GWG+ + G
Sbjct: 115 QVKPGQTCSVAGWGQTAPLGKHS 137
Score = 75.6 bits (187), Expect = 1e-15
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCV 287
+Q V HP Y+ + N+I LL+L + P+ LP + C
Sbjct: 64 PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCS 123
Query: 288 ITGWGR 293
+ GWG+
Sbjct: 124 VAGWGQ 129
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 179 bits (457), Expect = 3e-53
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M + CG LI V+TAAHC +I V G
Sbjct: 10 HSRPYMAHLDIVTEKG------LRVICGGFLISRQFVLTAAHCKGR----EITVILGA-- 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
++ RE Q+ V + IHE++ + +DI L+ L+ + + + P+
Sbjct: 58 ---HDVRKRES-TQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSP 113
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
++ + C GWG K GV TL++VE++++ C + +
Sbjct: 114 SDFIHPGAMCWAAGWG--KTGVRDPTSYTLREVELRIMDEKACVDYR--------YYEYK 163
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
+C G P + A GD GGPL+C GIVS+G P ++ V
Sbjct: 164 FQVCV-GSPTTLRAAFMGDSGGPLLCA-------GVAHGIVSYGHPDAK-PPAIFTRVST 214
Query: 538 FKKWI 542
+ WI
Sbjct: 215 YVPWI 219
Score = 118 bits (299), Expect = 8e-31
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
P+M L CG LI LTAAHC +V G + + E
Sbjct: 10 HSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGR--EITVILGAHDVR---KRE 64
Query: 102 LEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENC 160
+Q+ V IH +Y++ ++I LLKL ++ ++ + LP + C
Sbjct: 65 -STQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMC 123
Query: 161 VITGWGRDSADGGGP 175
GWG+
Sbjct: 124 WAAGWGKTGVRDPTS 138
Score = 75.6 bits (187), Expect = 1e-15
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+V G + + E +Q+ V IH +Y++ ++I LLKL ++ +
Sbjct: 50 EITVILGAHDVR---KRE-STQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAV 105
Query: 270 HPICLPDWNVTYDS-ENCVITGWGR 293
+ + LP + C GWG+
Sbjct: 106 NVVPLPSPSDFIHPGAMCWAAGWGK 130
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 179 bits (456), Expect = 4e-53
Identities = 62/245 (25%), Positives = 90/245 (36%), Gaps = 39/245 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M + +CG L+ V+TAAHC + +I V G
Sbjct: 10 HSRPYMAYLQIQS-------PAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGA-- 56
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N RE Q T + H + +T+ NDI L+ L ++ P +
Sbjct: 57 ---HNIQRREN-TQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
E C V GWG+ R TL++V++++ C +
Sbjct: 113 QEGLRPGTLCTVAGWGRVS---MRRGTDTLREVQLRVQRDRQCLRIFG-------SYDPR 162
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
IC G + A KGD GGPL+C GIVS+G G P V+ V
Sbjct: 163 RQICV-GDRRERKAAFKGDSGGPLLCN-------NVAHGIVSYGKSSG-VPPEVFTRVSS 213
Query: 538 FKKWI 542
F WI
Sbjct: 214 FLPWI 218
Score = 114 bits (288), Expect = 2e-29
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
P+M + +CG L+ + LTAAHC + +V G I E
Sbjct: 10 HSRPYM-AYLQIQSPAGQSRCGGFLVREDFVLTAAHC--WGSNINVTLGAHNIQ---RRE 63
Query: 102 LEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENC 160
+Q HP Y+ T++N+I LL+LS + + ++P+ LP C
Sbjct: 64 -NTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLC 122
Query: 161 VITGWGRDSADGG 173
+ GWGR S G
Sbjct: 123 TVAGWGRVSMRRG 135
Score = 74.9 bits (185), Expect = 1e-15
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+V G I E +Q HP Y+ T++N+I LL+LS + + +
Sbjct: 49 NINVTLGAHNIQ---RRE-NTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNV 104
Query: 270 HPICLPDWNVTYDS-ENCVITGWGR 293
+P+ LP C + GWGR
Sbjct: 105 NPVALPRAQEGLRPGTLCTVAGWGR 129
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 178 bits (453), Expect = 2e-52
Identities = 61/247 (24%), Positives = 89/247 (36%), Gaps = 37/247 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
E+ +++A+ T++ CG TLI V+TAAHC + +++ G
Sbjct: 10 NEHRFLVALYTSR--------SRTLFCGGTLINQEWVLTAAHCDRK----NFRIKLGM-- 55
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+++ + + + DI LI LD P HI P S
Sbjct: 56 ---HSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLP-S 111
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
+ C + GWG+ EG Y V + L+ +C+
Sbjct: 112 SPPSVGSVCRIMGWGRISPT-EGTYPDVPHCVNINLLEYEMCRAPYP----EFELPATSR 166
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDV 535
+CA GG +D CKGD GGPL+C GI SWG C P Y V
Sbjct: 167 TLCAGILEGG--KDTCKGDSGGPLIC-------NGQFQGIASWGDDPCAQPHKPAAYTKV 217
Query: 536 RKFKKWI 542
WI
Sbjct: 218 FDHLDWI 224
Score = 117 bits (295), Expect = 4e-30
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G E +++ L+ + CG +LI LTAAHC + + + + G
Sbjct: 2 IGGDECNINEHRFLVALYTSRSR--TLFCGGTLINQEWVLTAAHCDRKN--FRIKLGMHS 57
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+E+ R + + + +I L++L S + +I P LP
Sbjct: 58 KK---VPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPP 114
Query: 154 TYDSENCVITGWGRDSADGG 173
+ S C I GWGR S G
Sbjct: 115 SVGSV-CRIMGWGRISPTEG 133
Score = 76.5 bits (189), Expect = 6e-16
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 24/141 (17%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ + G +E+ R + + + +I L++L S + +I
Sbjct: 49 FRIKLGMHSKK---VPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIA 105
Query: 271 PICLPDWNVTYDSENCVITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGAT 330
P LP + S C I GWG +I+ +V C
Sbjct: 106 PFSLPSSPPSVGSV-CRIMGWG--------------------RISPTEGTYPDVPHCVNI 144
Query: 331 LILPHVVMTAAHCVNNIPVTD 351
+L + + A + +P T
Sbjct: 145 NLLEYEMCRAPYPEFELPATS 165
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 177 bits (452), Expect = 2e-52
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 38/245 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M +L K CG L+ V+TAAHC+ + I V G
Sbjct: 10 HSRPYMAFLLFKTSGKS-------HICGGFLVREDFVLTAAHCLGS----SINVTLGA-- 56
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N +RE Q V + H ++ +T+ NDI L+ L + + + P S
Sbjct: 57 ---HNIMERER-TQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
E C V GWG + GV L++V++++ C + + +
Sbjct: 113 LAEVKPGMMCSVAGWG--RLGVNMPSTDKLQEVDLEVQSEEKCIARFK-------NYIPF 163
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
+ ICA G P+ +++ GD GGPLVC GIVS+G G+ TP VY +
Sbjct: 164 TQICA-GDPSKRKNSFSGDSGGPLVCN-------GVAQGIVSYGRNDGT-TPDVYTRISS 214
Query: 538 FKKWI 542
F WI
Sbjct: 215 FLSWI 219
Score = 116 bits (293), Expect = 6e-30
Identities = 42/132 (31%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 45 PWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEELEE 104
P+M L + + CG L+ + LTAAHC + +V G I E E
Sbjct: 13 PYMAFLLFKTSGKSHI-CGGFLVREDFVLTAAHC--LGSSINVTLGAHNIM---ERE-RT 65
Query: 105 EQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENCVIT 163
+Q V HP+Y+ ETL N+I LLKL+ D D + PI LP C +
Sbjct: 66 QQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVA 125
Query: 164 GWGRDSADGGGP 175
GWGR +
Sbjct: 126 GWGRLGVNMPST 137
Score = 75.2 bits (186), Expect = 1e-15
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ +V G I E E +Q V HP+Y+ ETL N+I LLKL+ D D +
Sbjct: 49 SINVTLGAHNIM---ERE-RTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKV 104
Query: 270 HPICLPDWNVTYDS-ENCVITGWGR 293
PI LP C + GWGR
Sbjct: 105 SPINLPRSLAEVKPGMMCSVAGWGR 129
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 176 bits (450), Expect = 3e-52
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 44/246 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P S+ CG +L+ + V++AAHC + ++VR GE
Sbjct: 10 YSQPHQ-----------VSLNSGYHFCGGSLVNENWVVSAAHCYKS----RVEVRLGE-- 52
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N E Q + S++ H N+ + + NDI LI L P + ++ P S
Sbjct: 53 ---HNIKVTEGSE-QFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTS 108
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
C V+GWG + L+ + + ++ + C G + ++
Sbjct: 109 -CAPAGTMCTVSGWGNTMSS--TADSNKLQCLNIPILSYSDCNN-----SYPG--MITNA 158
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVR 536
CA GG +D+C+GD GGP+VC G+VSWG GC PGVY V
Sbjct: 159 MFCAGYLEGG--KDSCQGDSGGPVVCN-------GELQGVVSWGYGCAEPGNPGVYAKVC 209
Query: 537 KFKKWI 542
F W+
Sbjct: 210 IFNDWL 215
Score = 119 bits (302), Expect = 3e-31
Identities = 56/221 (25%), Positives = 77/221 (34%), Gaps = 68/221 (30%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G P + L Y CG SL+ N ++AAHC + V GE I
Sbjct: 4 GYECKAYSQPHQVSLNSG-----YHFCGGSLVNENWVVSAAHCYKSR--VEVRLGEHNIK 56
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
V E EQ V HPNYS+ ++N+I L+KLS + Y+ P+ LP
Sbjct: 57 --VTEG--SEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP- 111
Query: 156 DSENCVITGWG----------------------------------------------RDS 169
C ++GWG +DS
Sbjct: 112 AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDS 171
Query: 170 ADG--GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
G GGP+VC + G+ +W C P PG+Y
Sbjct: 172 CQGDSGGPVVCNGE-------LQGVVSWGYGCAEPGNPGVY 205
Score = 78.7 bits (195), Expect = 8e-17
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
V GE I V E EQ V HPNYS+ ++N+I L+KLS + Y+
Sbjct: 46 VEVRLGEHNIK--VTEG--SEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQ 101
Query: 271 PICLPDWNVTYDSENCVITGWGR 293
P+ LP C ++GWG
Sbjct: 102 PVALPTSCAP-AGTMCTVSGWGN 123
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 176 bits (450), Expect = 4e-52
Identities = 63/245 (25%), Positives = 97/245 (39%), Gaps = 38/245 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M + N CG LI + V+TAAHC I V G
Sbjct: 10 HSRPYMAYLEIVTSNG------PSKFCGGFLIRRNFVLTAAHCAGR----SITVTLGA-- 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N T+ E +Q+ V + + H + T+ +DI L+ L + +G P+
Sbjct: 58 ---HNITEEED-TWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQ 113
Query: 421 AEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ C V GWG + GV TL++V+++L+ C H+
Sbjct: 114 FNFVPPGRMCRVAGWG--RTGVLKPGSDTLQEVKLRLMDPQACS------HFRD--FDHN 163
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
+C G P + A KGD GGPL+C GIVS+G P V+ +
Sbjct: 164 LQLCV-GNPRKTKSAFKGDSGGPLLCA-------GVAQGIVSYGRSDAK-PPAVFTRISH 214
Query: 538 FKKWI 542
++ WI
Sbjct: 215 YRPWI 219
Score = 116 bits (294), Expect = 4e-30
Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
P+M L N CG LI N LTAAHC + +V G + I EEE
Sbjct: 10 HSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC--AGRSITVTLGA---HNITEEE 64
Query: 102 LEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENC 160
+ Q+ +V+ HP Y+T TL ++I LLKL + + P C
Sbjct: 65 -DTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMC 123
Query: 161 VITGWGRDSADGGGP 175
+ GWGR G
Sbjct: 124 RVAGWGRTGVLKPGS 138
Score = 74.5 bits (184), Expect = 2e-15
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ +V G + I EEE + Q+ +V+ HP Y+T TL ++I LLKL +
Sbjct: 50 SITVTLGA---HNITEEE-DTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAV 105
Query: 270 HPICLPDWNVTYDS-ENCVITGWGR 293
+ P C + GWGR
Sbjct: 106 GTLPFPSQFNFVPPGRMCRVAGWGR 130
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 176 bits (450), Expect = 4e-52
Identities = 61/245 (24%), Positives = 89/245 (36%), Gaps = 36/245 (14%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M K+ CG L+ V+TAAHC + V G
Sbjct: 10 HSRPYMAYYEFLKVGG------KKMFCGGFLVRDKFVLTAAHCKGR----SMTVTLGA-- 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N +E Q V++ H ++ NDI L+ L + P
Sbjct: 58 ---HNIKAKEE-TQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRR 113
Query: 421 AEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
C V GWG K +G + TL +V++ + VC+ Q + +
Sbjct: 114 NAHVKPGDECYVAGWG--KVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSY------NRA 165
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRK 537
+ IC G + + D GGPLVC+ GIVS+G GS P V+ V
Sbjct: 166 NEICV-GDSKIKGASFEEDSGGPLVCK-------RAAAGIVSYGQTDGS-APQVFTRVLS 216
Query: 538 FKKWI 542
F WI
Sbjct: 217 FVSWI 221
Score = 119 bits (300), Expect = 7e-31
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
P+M + K + CG L+ LTAAHC + +V G I +E
Sbjct: 10 HSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGR--SMTVTLGAHNIK---AKE 64
Query: 102 LEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-ENC 160
E +Q V HP+Y+ + N+I LLKL N + P+ LP N + C
Sbjct: 65 -ETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDEC 123
Query: 161 VITGWGRDSADGGGP 175
+ GWG+ + DG P
Sbjct: 124 YVAGWGKVTPDGEFP 138
Score = 75.6 bits (187), Expect = 1e-15
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ +V G I +E E +Q V HP+Y+ + N+I LLKL N +
Sbjct: 50 SMTVTLGAHNIK---AKE-ETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAV 105
Query: 270 HPICLPDWNVTYDS-ENCVITGWGR 293
P+ LP N + C + GWG+
Sbjct: 106 RPLNLPRRNAHVKPGDECYVAGWGK 130
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 184 bits (468), Expect = 5e-52
Identities = 54/318 (16%), Positives = 103/318 (32%), Gaps = 68/318 (21%)
Query: 278 NVTYDSENCVITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVV 337
+ + C + R + + + PW I + +K C ++ + V
Sbjct: 203 DESQSLSLCGMVWEHRKGTD--YHKQPWQAKISVIRPSK------GHESCMGAVVSEYFV 254
Query: 338 MTAAHCV-NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENF-------- 388
+TAAHC + IKV G ++ + + H N+
Sbjct: 255 LTAAHCFTVDDKEHSIKVSVGGEK--------------RDLEIEVVLFHPNYNINGKKEA 300
Query: 389 -EAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFG------ 440
+ D+ALI L I C P + + T + K
Sbjct: 301 GIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQD 360
Query: 441 ----VEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFK--------LHDSFICA---S 485
+ L + EV + + R + + + F+C S
Sbjct: 361 IKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVS 420
Query: 486 GGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI--GCG---------SDTPGVYVD 534
+ + C+GD GGPL+ +R RF QVG++SWG+ C + +++
Sbjct: 421 PYADPNTCRGDSGGPLIVH---KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHIN 477
Query: 535 VRKFKKWILDNSHGKIID 552
+ + W+ + + +
Sbjct: 478 LFQVLPWLKEKLQDEDLG 495
Score = 118 bits (298), Expect = 9e-29
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 25/148 (16%)
Query: 33 PISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAA 89
+ T + + PW + + + + C +++ LTAAHC D + V+
Sbjct: 215 WEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSV 274
Query: 90 GEWFINGIVEEELEEEQRRDVLDVRIHPNYST---------ETLENNIALLKLSSNIDFD 140
G ++ ++ V HPNY+ E + ++AL+KL + + +
Sbjct: 275 GGE------------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYG 322
Query: 141 DYIHPICLPDWNVTYDS-ENCVITGWGR 167
I PICLP T + T +
Sbjct: 323 QTIRPICLPCTEGTTRALRLPPTTTCQQ 350
Score = 72.6 bits (178), Expect = 9e-14
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 229 EEEQRRDVLDVRIHPNYST---------ETLENNIALLKLSSNIDFDDYIHPICLPDWNV 279
E++ ++ V HPNY+ E + ++AL+KL + + + I PICLP
Sbjct: 276 GEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEG 335
Query: 280 TYDS-ENCVITGWGR 293
T + T +
Sbjct: 336 TTRALRLPPTTTCQQ 350
Score = 34.9 bits (80), Expect = 0.063
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 164 GWGRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-----------TPDMPGLY-DV 209
++ D GGPL+ + F QVG+ +W VV + ++
Sbjct: 422 YADPNTCRGDSGGPLIVHKRS---RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINL 478
Query: 210 TY 211
Sbjct: 479 FQ 480
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 175 bits (447), Expect = 7e-52
Identities = 69/250 (27%), Positives = 110/250 (44%), Gaps = 45/250 (18%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
+P+ A+ T+ CG LI P V+TAAHC +++V G+
Sbjct: 10 TSHPYQAALYTS----------GHLLCGGVLIHPLWVLTAAHCKKP----NLQVFLGK-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N RE ++ +V + IH +++A + DI L+ L P + I
Sbjct: 54 ---HNLRQRESSQ-EQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERD 109
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
+ +C + GWGK +G + T++ + LV R C+ ++ +
Sbjct: 110 -CSANTTSCHILGWGKTA---DGDFPDTIQCAYIHLVSREECEHAYP-------GQITQN 158
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDV 535
+CA G +D+C+GD GGPLVC G+VSWG I CGS + PGVY +V
Sbjct: 159 MLCAGDEKYG--KDSCQGDSGGPLVCG-------DHLRGLVSWGNIPCGSKEKPGVYTNV 209
Query: 536 RKFKKWILDN 545
++ WI
Sbjct: 210 CRYTNWIQKT 219
Score = 119 bits (302), Expect = 3e-31
Identities = 49/223 (21%), Positives = 77/223 (34%), Gaps = 67/223 (30%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G P+ L+ CG LI P LTAAHC + + V G+
Sbjct: 2 VHGGPCDKTSHPYQAALYTSGH----LLCGGVLIHPLWVLTAAHCKKPN--LQVFLGKHN 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ E +++ V+ IHP+Y + + +I LL+L+ + I P+ L
Sbjct: 56 LR--QRES--SQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCS 111
Query: 154 TYDSENCVITGWG---------------------------------------------RD 168
+ C I GWG +D
Sbjct: 112 ANTTS-CHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKD 170
Query: 169 S--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
S D GGPLVC G+ +W ++ C + + PG+Y
Sbjct: 171 SCQGDSGGPLVCGD-------HLRGLVSWGNIPCGSKEKPGVY 206
Score = 78.0 bits (193), Expect = 1e-16
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVI 288
+++ V+ IHP+Y + + +I LL+L+ + I P+ L + C I
Sbjct: 61 SSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTS-CHI 119
Query: 289 TGWGRDSAETFFGEYP 304
GWG+ T G++P
Sbjct: 120 LGWGK----TADGDFP 131
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 176 bits (448), Expect = 8e-52
Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 43/262 (16%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G G + P+M+ + + C LI V+TAAHC N
Sbjct: 1 IIG-GNEVTP---HSRPYMVLLSLD----------RKTICAGALIAKDWVLTAAHCNLN- 45
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+V G ++ T EP Q V + + + ++ T D+ L+ L
Sbjct: 46 --KRSQVILGA-----HSITREEP-TKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAK 97
Query: 408 VKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
+ ++ + P ++ C V GWG + + TL++VE+ ++ R VC +
Sbjct: 98 INKYVTILHLPKKGDDVKPGTMCQVAGWG--RTHNSASWSDTLREVEITIIDRKVCNDRN 155
Query: 467 RKTRLGGVFKLHDSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-- 522
+ + +CA G +D+C GD G PL+C+ G+ S+G+
Sbjct: 156 HYNFNPVI---GMNMVCA-GSLRGGRDSCNGDSGSPLLCE-------GVFRGVTSFGLEN 204
Query: 523 GCGS-DTPGVYVDV-RKFKKWI 542
CG PGVY+ + +K WI
Sbjct: 205 KCGDPRGPGVYILLSKKHLNWI 226
Score = 115 bits (290), Expect = 2e-29
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
P+M++L ++ + C +LI + LTAAHC + V G I EE
Sbjct: 10 HSRPYMVLLSLDRKTI----CAGALIAKDWVLTAAHCN-LNKRSQVILGAHSIT---REE 61
Query: 102 LEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT-YDSENC 160
+Q V +P Y T E ++ LL+L+ + Y+ + LP C
Sbjct: 62 -PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMC 120
Query: 161 VITGWGRDSADGGGP 175
+ GWGR
Sbjct: 121 QVAGWGRTHNSASWS 135
Score = 76.4 bits (189), Expect = 7e-16
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
V G I EE +Q V +P Y T E ++ LL+L+ + Y+
Sbjct: 48 SQVILGAHSIT---REE-PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVT 103
Query: 271 PICLPDWNVT-YDSENCVITGWGR 293
+ LP C + GWGR
Sbjct: 104 ILHLPKKGDDVKPGTMCQVAGWGR 127
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 175 bits (447), Expect = 8e-52
Identities = 75/247 (30%), Positives = 107/247 (43%), Gaps = 45/247 (18%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
G +PW +A+L+ N CG L+ V+TAAHC N + V G
Sbjct: 10 GSHPWQVALLSG----------NQLHCGGVLVNERWVLTAAHCKMN----EYTVHLGS-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ DR Q S+ + H + +T ND+ L+ L+ + + + P+
Sbjct: 54 ---DTLGDRRA---QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSR 107
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
E C V+GWG + + S L V+VKL+ C + + L +S
Sbjct: 108 CEP-PGTTCTVSGWGTTTSP-DVTFPSDLMCVDVKLISPQDCTKVYKD-------LLENS 158
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDV 535
+CA ++AC GD GGPLVC R T G+VSWG CG + PGVY V
Sbjct: 159 MLCAGIPDSK--KNACNGDSGGPLVC-------RGTLQGLVSWGTFPCGQPNDPGVYTQV 209
Query: 536 RKFKKWI 542
KF KWI
Sbjct: 210 CKFTKWI 216
Score = 124 bits (315), Expect = 4e-33
Identities = 51/225 (22%), Positives = 74/225 (32%), Gaps = 71/225 (31%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G G PW + L + CG L+ LTAAHC Y+V G
Sbjct: 2 IDGAPCARGSHPWQVALLSGNQ----LHCGGVLVNERWVLTAAHCKMN--EYTVHLGSDT 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ QR HP YST+T N++ L+KL+S + + LP
Sbjct: 56 LGD------RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE 109
Query: 154 TYDSENCVITGWG----------------------------------------------- 166
+ C ++GWG
Sbjct: 110 PPGTT-CTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSK 168
Query: 167 RDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
+++ D GGPLVC G+ +W + C P+ PG+Y
Sbjct: 169 KNACNGDSGGPLVCR-------GTLQGLVSWGTFPCGQPNDPGVY 206
Score = 80.3 bits (199), Expect = 3e-17
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
Y+V G + QR HP YST+T N++ L+KL+S +
Sbjct: 47 YTVHLGSDTLGD------RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100
Query: 271 PICLPDWNVTYDSENCVITGWGR 293
+ LP + C ++GWG
Sbjct: 101 KVRLPSRCEPPGTT-CTVSGWGT 122
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 175 bits (446), Expect = 1e-51
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 43/248 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+ +++ + CG +LI V++AAHC + I+VR GE
Sbjct: 10 NTVPYQVSLNSGY-----------HFCGGSLINSQWVVSAAHCYKS----GIQVRLGE-- 52
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N E Q + S+ +H ++ + T+ NDI LI L + + + P S
Sbjct: 53 ---DNINVVEGNE-QFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTS 108
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
C+++GWG K Y LK ++ ++ + C+ ++ +
Sbjct: 109 CAS-AGTQCLISGWGNTKSSGT-SYPDVLKCLKAPILSDSSCKSAYP-------GQITSN 159
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVR 536
CA GG +D+C+GD GGP+VC GIVSWG GC + PGVY V
Sbjct: 160 MFCAGYLEGG--KDSCQGDSGGPVVCS-------GKLQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 537 KFKKWILD 544
+ WI
Sbjct: 211 NYVSWIKQ 218
Score = 120 bits (304), Expect = 1e-31
Identities = 57/222 (25%), Positives = 78/222 (35%), Gaps = 69/222 (31%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G P+ + L Y CG SLI ++AAHC + V GE IN
Sbjct: 4 GYTCGANTVPYQVSLNSG-----YHFCGGSLINSQWVVSAAHCYKSG--IQVRLGEDNIN 56
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTY 155
V E EQ +HP+Y++ TL N+I L+KL S + + I LP +
Sbjct: 57 --VVEG--NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS- 111
Query: 156 DSENCVITGWG-----------------------------------------------RD 168
C+I+GWG +D
Sbjct: 112 AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKD 171
Query: 169 SADG--GGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
S G GGP+VC K GI +W C + PG+Y
Sbjct: 172 SCQGDSGGPVVCSGK-------LQGIVSWGSGCAQKNKPGVY 206
Score = 78.7 bits (195), Expect = 9e-17
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
V GE IN V E EQ +HP+Y++ TL N+I L+KL S + +
Sbjct: 46 IQVRLGEDNIN--VVEG--NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 271 PICLPDWNVTYDSENCVITGWG 292
I LP + C+I+GWG
Sbjct: 102 SISLPTSCAS-AGTQCLISGWG 122
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 173 bits (441), Expect = 8e-51
Identities = 61/260 (23%), Positives = 90/260 (34%), Gaps = 45/260 (17%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G + E+P+++A+ T+ + C LI V+TAAHC
Sbjct: 1 VVG-GDECNI---NEHPFLVALYTS--------ASSTIHCAGALINREWVLTAAHCDRR- 47
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+I+++ G +++ R + + + DI LI L P
Sbjct: 48 ---NIRIKLGM-----HSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVT 99
Query: 408 VKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLR 467
HI P S C + GWGK Y + +V C+
Sbjct: 100 YSTHIAPVSLP-SRSRGVGSRCRIMGWGKIS---TTTYPDVPHCTNIFIVKHKWCEPLYP 155
Query: 468 KTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-G 523
+CA GG +D C GD GGPL+C GIV+ G
Sbjct: 156 WVP------ADSRTLCAGILKGG--RDTCHGDSGGPLICN-------GEMHGIVAGGSEP 200
Query: 524 CGS-DTPGVYVDVRKFKKWI 542
CG P VY V + WI
Sbjct: 201 CGQHLKPAVYTKVFDYNNWI 220
Score = 116 bits (294), Expect = 5e-30
Identities = 45/224 (20%), Positives = 71/224 (31%), Gaps = 65/224 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G E P+++ L+ + C +LI LTAAHC + + + G
Sbjct: 2 VGGDECNINEHPFLVALYTSASS--TIHCAGALINREWVLTAAHCDRRN--IRIKLGMHS 57
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
N +E+ R L+ +I L++L + + +I P+ LP +
Sbjct: 58 KN---IRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSR 114
Query: 154 TYDSENCVITGWGR---------------------------------------------- 167
S C I GWG+
Sbjct: 115 GVGSR-CRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGR 173
Query: 168 DS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
D+ D GGPL+C + GI A S C P +Y
Sbjct: 174 DTCHGDSGGPLICNGE-------MHGIVAGGSEPCGQHLKPAVY 210
Score = 74.9 bits (185), Expect = 2e-15
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ G N +E+ R L+ +I L++L + + +I
Sbjct: 48 NIRIKLGMHSKN---IRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHI 104
Query: 270 HPICLPDWNVTYDSENCVITGWGRDSAETF 299
P+ LP + S C I GWG+ S T+
Sbjct: 105 APVSLPSRSRGVGSR-CRIMGWGKISTTTY 133
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 172 bits (438), Expect = 2e-50
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 47/266 (17%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G ++ G +P+ + ++ CG +LI ++TAAHCV++
Sbjct: 1 IIN-GYEAYT---GLFPYQAGLDITLQDQRRVW------CGGSLIDNKWILTAAHCVHD- 49
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
+ V G + + +I H F T ND+ALI +
Sbjct: 50 -AVSVVVYLGS-----AVQYE----GEAVVNSERIISHSMFNPDTYLNDVALIKIP---H 96
Query: 408 VK--NHIGLACTPNSAEE---YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVC 462
V+ ++I P+ E +++ V+GWG+ L+ ++ + C
Sbjct: 97 VEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTD-----TVILQYTYNLVIDNDRC 151
Query: 463 QQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI 522
Q+ + +S IC + C GD GGP V D+ +G+VS+
Sbjct: 152 AQEY------PPGIIVESTICGDTSDGKSPCFGDSGGPFVLS-----DKNLLIGVVSFVS 200
Query: 523 GCG--SDTPGVYVDVRKFKKWILDNS 546
G G S P + V + WI N+
Sbjct: 201 GAGCESGKPVGFSRVTSYMDWIQQNT 226
Score = 136 bits (346), Expect = 2e-37
Identities = 49/224 (21%), Positives = 79/224 (35%), Gaps = 63/224 (28%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I+G Y G FP+ L ++ CG SLI LTAAHCV V+ V G
Sbjct: 2 INGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAV 61
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLP---D 150
E E + + H ++ +T N++AL+K+ +++ D I PI LP +
Sbjct: 62 QY-------EGEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEE 113
Query: 151 WNVTYDSENCVITGWGRDSADG-------------------------------------- 172
N +++ ++GWG+ + D
Sbjct: 114 LNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGK 173
Query: 173 -------GGPLVCPSKEDPTTFFQVGIAAW--SVVCTPDMPGLY 207
GGP V K +G+ ++ C P +
Sbjct: 174 SPCFGDSGGPFVLSDK-----NLLIGVVSFVSGAGCESGKPVGF 212
Score = 81.9 bits (203), Expect = 9e-18
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ V G E E + + H ++ +T N++AL+K+ +++ D I
Sbjct: 52 SVVVYLGSAVQY-------EGEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNI 103
Query: 270 HPICLP---DWNVTYDSENCVITGWGRDS 295
PI LP + N +++ ++GWG+ +
Sbjct: 104 QPIRLPSGEELNNKFENIWATVSGWGQSN 132
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 171 bits (437), Expect = 3e-50
Identities = 62/249 (24%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW A+L N CGA L+ P ++TAAHC +VR G
Sbjct: 10 HTQPWQAALLLR---------PNQLYCGAVLVHPQWLLTAAHCRKK----VFRVRLGH-- 54
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ + Q + H + ND+ LI L+ + S
Sbjct: 55 ---YSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS-S 110
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
C+V+GWG K + + L+ + + ++ + C+ + ++ D+
Sbjct: 111 HCPSAGTKCLVSGWGTTKSP-QVHFPKVLQCLNISVLSQKRCEDAYPR-------QIDDT 162
Query: 481 FICA--SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCG-SDTPGVYVDVR 536
CA G +D+C+GD GGP+VC + G+VSWG C + PGVY ++
Sbjct: 163 MFCAGDKAG--RDSCQGDSGGPVVCN-------GSLQGLVSWGDYPCARPNRPGVYTNLC 213
Query: 537 KFKKWILDN 545
KF KWI +
Sbjct: 214 KFTKWIQET 222
Score = 126 bits (318), Expect = 2e-33
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 66/224 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I+G + PW L CGA L+ P LTAAHC + + V G +
Sbjct: 2 INGSDCDMHTQPWQAALLL---RPNQLYCGAVLVHPQWLLTAAHCRKK--VFRVRLGHYS 56
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
++ + E +Q + HP YS N++ L+KL+ I + PI +
Sbjct: 57 LSPVYESG---QQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCP 113
Query: 154 TYDSENCVITGWG----------------------------------------------R 167
+ ++ C+++GWG R
Sbjct: 114 SAGTK-CLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGR 172
Query: 168 DS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
DS D GGP+VC G+ +W C P+ PG+Y
Sbjct: 173 DSCQGDSGGPVVCNGS-------LQGLVSWGDYPCARPNRPGVY 209
Score = 79.5 bits (197), Expect = 5e-17
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ V G + ++ + E +Q + HP YS N++ L+KL+ I +
Sbjct: 47 VFRVRLGHYSLSPVYESG---QQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDV 103
Query: 270 HPICLPDWNVTYDSENCVITGWGR 293
PI + + ++ C+++GWG
Sbjct: 104 RPINVSSHCPSAGTK-CLVSGWGT 126
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 171 bits (436), Expect = 3e-50
Identities = 58/247 (23%), Positives = 85/247 (34%), Gaps = 44/247 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
E+ ++ + N CG TLI V+TA HC ++++ G
Sbjct: 10 NEHRFLALVYANG-----------SLCGGTLINQEWVLTARHCDRG----NMRIYLGM-- 52
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N + + + DI LI L+ P HI P S
Sbjct: 53 ---HNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP-S 108
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
C + GWG + ++ VCQ + L +
Sbjct: 109 NPPSVGSVCRIMGWGTITSP-NATLPDVPHCANINILDYAVCQAAYK--------GLAAT 159
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-GCGS-DTPGVYVDV 535
+CA GG +D CKGD GGPL+C +F GI+S G C PG+Y V
Sbjct: 160 TLCAGILEGG--KDTCKGDSGGPLICN-----GQF--QGILSVGGNPCAQPRKPGIYTKV 210
Query: 536 RKFKKWI 542
+ WI
Sbjct: 211 FDYTDWI 217
Score = 118 bits (298), Expect = 1e-30
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 11/140 (7%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G E ++ +++ CG +LI LTA HC + G
Sbjct: 2 IGGDECNINEHRFLALVYAN-----GSLCGGTLINQEWVLTARHC--DRGNMRIYLGMHN 54
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ + +R + + +I L++L+ + +I P+ LP
Sbjct: 55 LK---VLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP 111
Query: 154 TYDSENCVITGWGRDSADGG 173
+ S C I GWG ++
Sbjct: 112 SVGS-VCRIMGWGTITSPNA 130
Score = 78.3 bits (194), Expect = 1e-16
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
+ G + + +R + + +I L++L+ + +I
Sbjct: 46 MRIYLGMHNLK---VLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIA 102
Query: 271 PICLPDWNVTYDSENCVITGWGR 293
P+ LP + S C I GWG
Sbjct: 103 PLSLPSNPPSVGS-VCRIMGWGT 124
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 171 bits (435), Expect = 4e-50
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 48/247 (19%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
+P+M+++ CGATLI P+ VM+AAHCV N+ V ++V G
Sbjct: 10 HAWPFMVSLQLR----------GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGA-- 57
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N + REP Q V +I ++ + NDI ++ L+ + ++ +A P
Sbjct: 58 ---HNLSRREP-TRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ C+ GWG S L+++ V +V ++C+
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRN--RGIASVLQELNVTVVT-SLCR---------------R 154
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGCGS-DTPGVYVDV 535
S +C C GD G PLVC GI S+ GC S P + V
Sbjct: 155 SNVCT-LVRGRQAGVCFGDSGSPLVCN-------GLIHGIASFVRGGCASGLYPDAFAPV 206
Query: 536 RKFKKWI 542
+F WI
Sbjct: 207 AQFVNWI 213
Score = 122 bits (308), Expect = 3e-32
Identities = 44/218 (20%), Positives = 69/218 (31%), Gaps = 60/218 (27%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGE 91
+ GR +P+M+ L + CGA+LI PN ++AAHCV V G
Sbjct: 2 VGGRRARPHAWPFMVSLQLRGGHF----CGATLIAPNFVMSAAHCVANVNVRAVRVVLGA 57
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDW 151
++ E Q V + Y L N+I +L+L+ + + + LP
Sbjct: 58 HNLS---RRE-PTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 152 NVT-YDSENCVITGWGRDSADG-------------------------------------- 172
+ C+ GWG +
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGD 172
Query: 173 -GGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
G PLVC GIA++ C + P +
Sbjct: 173 SGSPLVC-------NGLIHGIASFVRGGCASGLYPDAF 203
Score = 77.2 bits (191), Expect = 2e-16
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
V G ++ E Q V + Y L N+I +L+L+ + + +
Sbjct: 50 AVRVVLGAHNLS---RRE-PTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANV 104
Query: 270 HPICLPDWNVT-YDSENCVITGWGR 293
LP + C+ GWG
Sbjct: 105 QVAQLPAQGRRLGNGVQCLAMGWGL 129
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 171 bits (436), Expect = 5e-50
Identities = 73/270 (27%), Positives = 109/270 (40%), Gaps = 57/270 (21%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTD 351
+ E PW +A+ N +QCG L+ + V+TAAHC N+
Sbjct: 7 SQVDCE---NSQPWHVAVYRF----------NKYQCGGVLLDRNWVLTAAHCYND----K 49
Query: 352 IKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-----------NDIALI 400
+V G+ NN + EP Q R VS+ H +F + ND+ L+
Sbjct: 50 YQVWLGK-----NNFLEDEPSD-QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLL 103
Query: 401 ILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRN 460
L P + + + P + E C+ +GWG ++ +Y L+ V +KL+P
Sbjct: 104 RLSKPADITDVVKPITLP-TEEPKLGSTCLASGWGSTT-PIKFKYPDDLQCVNLKLLPNE 161
Query: 461 VCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGI 517
C + K+ D+ +CA GG C+ D GGPL+C GI
Sbjct: 162 DCDKAHE-------MKVTDAMLCAGEMDGG--SYTCEHDSGGPLICD-------GILQGI 205
Query: 518 VSWGI-GCGS-DTPGVYVDVRKFKKWILDN 545
SWG CG P VY + KF WI +
Sbjct: 206 TSWGPEPCGEPTEPSVYTKLIKFSSWIRET 235
Score = 113 bits (284), Expect = 1e-28
Identities = 52/238 (21%), Positives = 80/238 (33%), Gaps = 80/238 (33%)
Query: 32 EPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGE 91
P+ + PW + ++ + + ++CG L+ N LTAAHC Y+ Y V G+
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNK----YQCGGVLLDRNWVLTAAHC--YNDKYQVWLGK 56
Query: 92 WFINGIVEEELEEEQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFD 140
+E +Q R V HP+++ L N++ LL+LS D
Sbjct: 57 NNFL--EDEP--SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADIT 112
Query: 141 DYIHPICLPDWNVTYDSENCVITGWG---------------------------------- 166
D + PI LP S C+ +GWG
Sbjct: 113 DVVKPITLPTEEPKLGST-CLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKV 171
Query: 167 -------------RDSADG--GGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
+ + GGPL+C GI +W C P P +Y
Sbjct: 172 TDAMLCAGEMDGGSYTCEHDSGGPLIC-------DGILQGITSWGPEPCGEPTEPSVY 222
Score = 69.9 bits (172), Expect = 1e-13
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 229 EEEQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFDDYIHPICLPDW 277
+Q R V HP+++ L N++ LL+LS D D + PI LP
Sbjct: 64 PSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTE 123
Query: 278 NVTYDSENCVITGWGR 293
S C+ +GWG
Sbjct: 124 EPKLGST-CLASGWGS 138
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 168 bits (429), Expect = 5e-49
Identities = 65/271 (23%), Positives = 104/271 (38%), Gaps = 58/271 (21%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G + + PW +A+ CG L+ + V+TAAHC +
Sbjct: 1 VVG-GFNCEK---NSQPWQVAVYYQ----------KEHICGGVLLDRNWVLTAAHCYVD- 45
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-----------ND 396
+V G+ N EP Q R VS+ + H F + +D
Sbjct: 46 ---QYEVWLGK-----NKLFQEEP-SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDD 96
Query: 397 IALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKL 456
+ L+ L P + + + P + E C+ +GWG + L+ V + L
Sbjct: 97 LMLLRLSKPADITDVVKPIALP-TKEPKPGSKCLASGWGSIT-PTRWQKPDDLQCVFITL 154
Query: 457 VPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFT 513
+P C + + K+ D +CA GG +D C+ D GGPL+C
Sbjct: 155 LPNENCAKVYLQ-------KVTDVMLCAGEMGGG--KDTCRDDSGGPLICD-------GI 198
Query: 514 QVGIVSWG-IGCGS-DTPGVYVDVRKFKKWI 542
G S+G + CG P +Y ++ KF WI
Sbjct: 199 LQGTTSYGPVPCGKPGVPAIYTNLIKFNSWI 229
Score = 109 bits (276), Expect = 1e-27
Identities = 50/228 (21%), Positives = 73/228 (32%), Gaps = 80/228 (35%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
PW + ++Y K CG L+ N LTAAHC Y V G+ + +E
Sbjct: 10 NSQPWQVAVYYQK----EHICGGVLLDRNWVLTAAHCYVDQ--YEVWLGKNKLF----QE 59
Query: 102 LEEEQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFDDYIHPICLPD 150
Q R V HP ++ L +++ LL+LS D D + PI LP
Sbjct: 60 EPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPT 119
Query: 151 WNVTYDSENCVITGWGRDSADG-------------------------------------- 172
S+ C+ +GWG +
Sbjct: 120 KEPKPGSK-CLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEM 178
Query: 173 -----------GGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
GGPL+C G ++ V C P +P +Y
Sbjct: 179 GGGKDTCRDDSGGPLICD-------GILQGTTSYGPVPCGKPGVPAIY 219
Score = 68.8 bits (169), Expect = 2e-13
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 229 EEEQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFDDYIHPICLPDW 277
Q R V HP ++ L +++ LL+LS D D + PI LP
Sbjct: 61 PSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTK 120
Query: 278 NVTYDSENCVITGWGR 293
S+ C+ +GWG
Sbjct: 121 EPKPGSK-CLASGWGS 135
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 167 bits (426), Expect = 1e-48
Identities = 69/249 (27%), Positives = 99/249 (39%), Gaps = 45/249 (18%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW A+ CG L+ V+TAAHC VR G+
Sbjct: 10 HSQPWQAALFQG----------ERLICGGVLVGDRWVLTAAHCKKQ----KYSVRLGD-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVF---NDIALIILDFPFPVKNHIGLACT 417
++ R+ P QE V+Q H + +DI LI L + + +
Sbjct: 54 ---HSLQSRDQ-PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL 109
Query: 418 PNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKL 477
N Q CI++GWG + + +TL EVK+ +N C++ K+
Sbjct: 110 ANL-CPKVGQKCIISGWGTVTSP-QENFPNTLNCAEVKIYSQNKCERAYPG-------KI 160
Query: 478 HDSFICA--SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYV 533
+ +CA S G D C+GD GGPLVC GI SWG CG + PGVY
Sbjct: 161 TEGMVCAGSSNG--ADTCQGDSGGPLVCD-------GMLQGITSWGSDPCGKPEKPGVYT 211
Query: 534 DVRKFKKWI 542
+ ++ WI
Sbjct: 212 KICRYTTWI 220
Score = 113 bits (284), Expect = 1e-28
Identities = 56/227 (24%), Positives = 81/227 (35%), Gaps = 71/227 (31%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ GR PW LF +R CG L+G LTAAHC YSV G+
Sbjct: 2 LEGRECIPHSQPWQAALFQGER----LICGGVLVGDRWVLTAAHC--KKQKYSVRLGDHS 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYST---ETLENNIALLKLSSNIDFDDYIHPICLPD 150
+ ++ EQ V HP Y+ E ++I L++L ++ + D + P+ L +
Sbjct: 56 LQ--SRDQ--PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN 111
Query: 151 WNVTYDSENCVITGWG-------------------------------------------- 166
+ C+I+GWG
Sbjct: 112 LCPKVGQK-CIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSS 170
Query: 167 --RDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
D+ D GGPLVC GI +W S C P+ PG+Y
Sbjct: 171 NGADTCQGDSGGPLVCDG-------MLQGITSWGSDPCGKPEKPGVY 210
Score = 71.0 bits (175), Expect = 4e-14
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 229 EEEQRRDVLDVRIHPNYST---ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSEN 285
+ EQ V HP Y+ E ++I L++L ++ + D + P+ L + +
Sbjct: 61 QPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQK- 119
Query: 286 CVITGWGR 293
C+I+GWG
Sbjct: 120 CIISGWGT 127
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 167 bits (425), Expect = 1e-48
Identities = 67/247 (27%), Positives = 95/247 (38%), Gaps = 44/247 (17%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW A++ N C L+ P V++AAHC N + G
Sbjct: 10 HSQPWQAALVME----------NELFCSGVLVHPQWVLSAAHCFQN----SYTIGLGLH- 54
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+ D+EP Q S H + + ND+ LI LD + I +
Sbjct: 55 ---SLEADQEPGS-QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQ 110
Query: 421 AEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDS 480
+C+V+GWG GR + L+ V V +V VC + H S
Sbjct: 111 CPT-AGNSCLVSGWGLLA---NGRMPTVLQCVNVSVVSEEVCSKLYDP-------LYHPS 159
Query: 481 FICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS-DTPGVYVDV 535
CA +D+C GD GGPL+C G+VS+G CG PGVY ++
Sbjct: 160 MFCAGGGQDQ--KDSCNGDSGGPLICN-------GYLQGLVSFGKAPCGQVGVPGVYTNL 210
Query: 536 RKFKKWI 542
KF +WI
Sbjct: 211 CKFTEWI 217
Score = 123 bits (311), Expect = 2e-32
Identities = 46/223 (20%), Positives = 74/223 (33%), Gaps = 66/223 (29%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I+G + PW L C L+ P L+AAHC + +Y++ G
Sbjct: 2 INGEDCSPHSQPWQAALVMENE----LFCSGVLVHPQWVLSAAHC--FQNSYTIGLGLHS 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNV 153
+ E Q + HP Y+ L N++ L+KL ++ D I I +
Sbjct: 56 LEADQEPG---SQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCP 112
Query: 154 TYDSENCVITGWGR---------------------------------------------D 168
T + C+++GWG D
Sbjct: 113 TAGNS-CLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKD 171
Query: 169 S--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
S D GGPL+C + G+ ++ C +PG+Y
Sbjct: 172 SCNGDSGGPLICNG-------YLQGLVSFGKAPCGQVGVPGVY 207
Score = 79.1 bits (196), Expect = 5e-17
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+Y++ G + E Q + HP Y+ L N++ L+KL ++ D I
Sbjct: 46 SYTIGLGLHSLEADQEPG---SQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTI 102
Query: 270 HPICLPDWNVTYDSENCVITGWGR 293
I + T + C+++GWG
Sbjct: 103 RSISIASQCPTAGNS-CLVSGWGL 125
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 167 bits (425), Expect = 1e-48
Identities = 66/261 (25%), Positives = 96/261 (36%), Gaps = 47/261 (18%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
+ G G + E+ ++A + F C TLI V+TAAHC N
Sbjct: 1 VIG-GDECNI---NEHRSLVAFFNS----------TGFFCSGTLINEEWVLTAAHCDNT- 45
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIH-ENFEAKTVFNDIALIILDFPF 406
+ +++ G +++ Q R + +I + + DI LI LD
Sbjct: 46 ---NFQMKLGV-----HSKKVLNEDE-QTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRV 96
Query: 407 PVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQL 466
HI P S+ C + GWG ++ Y + L+ VCQ
Sbjct: 97 SNSEHIVPLSLP-SSPPSVGSVCHIMGWGSIT-PIKVTYPDVPYCAYINLLDDAVCQAGY 154
Query: 467 RKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI- 522
+ +CA GG +D C GD GGPL+C GIVS+G
Sbjct: 155 PELL------TEYRTLCAGILEGG--KDTCGGDSGGPLICN-------GQFQGIVSFGAH 199
Query: 523 GCGS-DTPGVYVDVRKFKKWI 542
CG PGVY V + WI
Sbjct: 200 PCGQGLKPGVYTKVFDYNHWI 220
Score = 116 bits (292), Expect = 8e-30
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
I G E ++ F F C +LI LTAAHC + + + G
Sbjct: 2 IGGDECNINEHRSLVAFFNSTG----FFCSGTLINEEWVLTAAHCDNTN--FQMKLGVHS 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPN-YSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
E+EQ R+ + I PN + E L+ +I L+KL S + ++I P+ LP
Sbjct: 56 KK----VLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSP 111
Query: 153 VTYDSENCVITGWGRDSADGG 173
+ S C I GWG +
Sbjct: 112 PSVGSV-CHIMGWGSITPIKV 131
Score = 75.3 bits (186), Expect = 1e-15
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 229 EEEQRRDVLDVRIHPN-YSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCV 287
E+EQ R+ + I PN + E L+ +I L+KL S + ++I P+ LP + S C
Sbjct: 61 EDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSV-CH 119
Query: 288 ITGWGR 293
I GWG
Sbjct: 120 IMGWGS 125
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 166 bits (424), Expect = 2e-48
Identities = 63/247 (25%), Positives = 95/247 (38%), Gaps = 45/247 (18%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+M ++ CG TLI P V+TAAHC+ +IP + V G
Sbjct: 10 HSRPYMASLQMRG-------NPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA-- 60
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNS 420
+N +EP Q +V+Q++++ N++A+ NDI LI L P + + P
Sbjct: 61 ---HNVRTQEP-TQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQ 115
Query: 421 AEE-YDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHD 479
+ C+ GWG + G L+++ V +V
Sbjct: 116 DQPVPHGTQCLAMGWG--RVGAHDPPAQVLQELNVTVVTFFCRPHN-------------- 159
Query: 480 SFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-GCGS-DTPGVYVDV 535
IC P C GD GGPL+C GI S+ I GC + P + V
Sbjct: 160 --ICT-FVPRRKAGICFGDSGGPLICD-------GIIQGIDSFVIWGCATRLFPDFFTRV 209
Query: 536 RKFKKWI 542
+ WI
Sbjct: 210 ALYVDWI 216
Score = 118 bits (297), Expect = 1e-30
Identities = 47/210 (22%), Positives = 69/210 (32%), Gaps = 57/210 (27%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQ--YDVTYSVAAGEWFINGIVE 99
P+M + N CG +LI P+ LTAAHC++ +V G +
Sbjct: 10 HSRPYM-ASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVR---T 65
Query: 100 EELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDS-E 158
+E +Q V V NY E N+I L++LSS + + + LP +
Sbjct: 66 QE-PTQQHFSVAQV-FLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGT 123
Query: 159 NCVITGWGRDSADG---------------------------------------GGPLVCP 179
C+ GWGR A GGPL+C
Sbjct: 124 QCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICFGDSGGPLICD 183
Query: 180 SKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
GI ++ C T P +
Sbjct: 184 -------GIIQGIDSFVIWGCATRLFPDFF 206
Score = 71.0 bits (175), Expect = 3e-14
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+V G + +E +Q V V NY E N+I L++LSS + +
Sbjct: 53 LVNVVLGAHNVR---TQE-PTQQHFSVAQV-FLNNYDAENKLNDILLIQLSSPANLSASV 107
Query: 270 HPICLPDWNVTYDS-ENCVITGWGR 293
+ LP + C+ GWGR
Sbjct: 108 ATVQLPQQDQPVPHGTQCLAMGWGR 132
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 166 bits (422), Expect = 5e-48
Identities = 70/258 (27%), Positives = 100/258 (38%), Gaps = 56/258 (21%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW +A++ + CG LI P V+TAAHC +N + +V G
Sbjct: 10 NSQPWQVAVINE------------YLCGGVLIDPSWVITAAHCYSN----NYQVLLGR-- 51
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-----------NDIALIILDFPFPVK 409
NN EPF Q R V Q + H ++ V ND+ L+ L P +
Sbjct: 52 ---NNLFKDEPFA-QRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADIT 107
Query: 410 NHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKT 469
+ + P + E C+ +GWG E L+ V + L+ C + +
Sbjct: 108 GGVKVIDLP-TKEPKVGSTCLASGWGSTNPS-EMVVSHDLQCVNIHLLSNEKCIETYKD- 164
Query: 470 RLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CG 525
+ D +CA GG +D C GD GGPL+C GI S G C
Sbjct: 165 ------NVTDVMLCAGEMEGG--KDTCAGDSGGPLICD-------GVLQGITSGGATPCA 209
Query: 526 S-DTPGVYVDVRKFKKWI 542
TP +Y + KF WI
Sbjct: 210 KPKTPAIYAKLIKFTSWI 227
Score = 107 bits (270), Expect = 8e-27
Identities = 52/236 (22%), Positives = 73/236 (30%), Gaps = 82/236 (34%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G PW + + + CG LI P+ +TAAHC Y Y V G
Sbjct: 2 VGGYKCEKNSQPWQVAVINE------YLCGGVLIDPSWVITAAHC--YSNNYQVLLGRNN 53
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFDDY 142
+ +E QRR V HP+Y + N++ LL LS D
Sbjct: 54 LF--KDEP--FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGG 109
Query: 143 IHPICLPDWNVTYDSENCVITGWG------------------------------------ 166
+ I LP S C+ +GWG
Sbjct: 110 VKVIDLPTKEPKVGST-CLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTD 168
Query: 167 -----------RDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
+D+ D GGPL+C GI + + C P P +Y
Sbjct: 169 VMLCAGEMEGGKDTCAGDSGGPLICDG-------VLQGITSGGATPCAKPKTPAIY 217
Score = 68.0 bits (167), Expect = 4e-13
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 229 EEEQRRDVLDVRIHPNYSTETL-----------ENNIALLKLSSNIDFDDYIHPICLPDW 277
QRR V HP+Y + N++ LL LS D + I LP
Sbjct: 59 PFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTK 118
Query: 278 NVTYDSENCVITGWGR 293
S C+ +GWG
Sbjct: 119 EPKVGST-CLASGWGS 133
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 163 bits (416), Expect = 3e-47
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 55/259 (21%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW A+ + FQCG L+ V+TAAHC+++ + ++ G
Sbjct: 10 HSQPWQAALYHF----------STFQCGGILVHRQWVLTAAHCISD----NYQLWLGR-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVF-----------NDIALIILDFPFPVK 409
+N D E Q VS+ + H F + +D+ L+ L P
Sbjct: 54 ---HNLFDDENTA-QFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTI 109
Query: 410 N-HIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRK 468
+ + P + E C+ +GWG + + L+ V++K++P + C++ +
Sbjct: 110 TDAVKVVELP-TEEPEVGSTCLASGWGSIEPE-NFSFPDDLQCVDLKILPNDECKKAHVQ 167
Query: 469 TRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWG-IGC 524
K+ D +C GG +D C GD GGPL+C G+ SWG + C
Sbjct: 168 -------KVTDFMLCVGHLEGG--KDTCVGDSGGPLMCD-------GVLQGVTSWGYVPC 211
Query: 525 GS-DTPGVYVDVRKFKKWI 542
G+ + P V V V + KWI
Sbjct: 212 GTPNKPSVAVRVLSYVKWI 230
Score = 106 bits (268), Expect = 2e-26
Identities = 48/237 (20%), Positives = 77/237 (32%), Gaps = 81/237 (34%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G PW L+++ F+CG L+ LTAAHC+ + Y + G
Sbjct: 2 VGGWECEQHSQPWQAALYHFST----FQCGGILVHRQWVLTAAHCISDN--YQLWLGRHN 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENN-----------IALLKLSSNID-FDD 141
+ ++E Q V + HP ++ LEN+ + LL+L+ D D
Sbjct: 56 LF---DDE-NTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITD 111
Query: 142 YIHPICLPDWNVTYDSENCVITGWGRDSADG----------------------------- 172
+ + LP S C+ +GWG +
Sbjct: 112 AVKVVELPTEEPEVGST-CLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVT 170
Query: 173 --------------------GGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
GGPL+C G+ +W V C TP+ P +
Sbjct: 171 DFMLCVGHLEGGKDTCVGDSGGPLMCDG-------VLQGVTSWGYVPCGTPNKPSVA 220
Score = 64.5 bits (158), Expect = 6e-12
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENN-----------IALLKLSSNID-FDDYIHPICLPD 276
Q V + HP ++ LEN+ + LL+L+ D D + + LP
Sbjct: 61 NTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPT 120
Query: 277 WNVTYDSENCVITGWGR 293
S C+ +GWG
Sbjct: 121 EEPEVGST-CLASGWGS 136
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 170 bits (433), Expect = 5e-47
Identities = 51/299 (17%), Positives = 94/299 (31%), Gaps = 71/299 (23%)
Query: 292 GRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCV-NNIPVT 350
S + PW + I + C LI V+TAAHC + +
Sbjct: 227 ANASDQ---ERTPWHVTIKPK----------SQETCRGALISDQWVLTAAHCFRDGNDHS 273
Query: 351 DIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVF---------NDIALII 401
+V G+ + +E + + I F+ +DIAL+
Sbjct: 274 LWRVNVGDPKS----------QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLK 323
Query: 402 LDFPFPVKNHIGLACTPNSAEEY------DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVK 455
L + H C P + E C + L ++
Sbjct: 324 LAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLN 383
Query: 456 L-----VPRNVCQQQLRKTRL------GGVFKLHDSFICASGGPNQDACKGDGGGPLVCQ 504
+ V C + + + + + D F+C+ ++ CKG+ GG + +
Sbjct: 384 INLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLE 443
Query: 505 LKNERDRFTQVGIVSWGI-----GCG-------------SDTPGVYVDVRKFKKWILDN 545
R RF QVG+VSWG+ G ++++ + + W+ +
Sbjct: 444 ---RRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQH 499
Score = 111 bits (280), Expect = 2e-26
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 30/160 (18%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVT---YSVAAG 90
+S + PW + + + C +LI LTAAHC + + V G
Sbjct: 225 MSANASDQERTPWHVTIKPKSQ----ETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVG 280
Query: 91 EWFINGIVEEELEEEQRRDVLDVRIHPNYST---------ETLENNIALLKLSSNIDFDD 141
+ + + + + I P + E ++IALLKL+ +
Sbjct: 281 DP--------KSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMST 332
Query: 142 YIHPICLPDWNVTYDS------ENCVITGWGRDSADGGGP 175
+ PICLP + C +
Sbjct: 333 HARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPA 372
Score = 70.8 bits (173), Expect = 4e-13
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 23/98 (23%)
Query: 211 YSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST---------ETLENNIALLKLSS 261
+ V G+ + + + + I P + E ++IALLKL+
Sbjct: 275 WRVNVGDP--------KSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQ 326
Query: 262 NIDFDDYIHPICLPDWNVTYDS------ENCVITGWGR 293
+ + PICLP + C
Sbjct: 327 KVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENEL 364
Score = 34.9 bits (80), Expect = 0.077
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 166 GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAW 195
+ GG + + FFQVG+ +W
Sbjct: 428 DESPCKGESGGAVFLERRF---RFFQVGLVSW 456
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 173 bits (439), Expect = 1e-46
Identities = 61/374 (16%), Positives = 116/374 (31%), Gaps = 73/374 (19%)
Query: 219 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDF--DDY--IHPICL 274
+ + + E DV + P + + N +A K + F D + +
Sbjct: 383 LLYIGKDRKNPREDYLDVYVFGVGPLVNQVNI-NALASKKDNEQHVFKVKDMENLEDVFY 441
Query: 275 PDWNVTYDSENCVITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILP 334
+ + C + R + + + PW I ++ C ++
Sbjct: 442 QMIDESQSLSLCGMVWEHRKGTD--YHKQPWQAKISVI------RPSKGHESCMGAVVSE 493
Query: 335 HVVMTAAHCV-NNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTV 393
+ V+TAAHC + IKV G ++ + + H N+
Sbjct: 494 YFVLTAAHCFTVDDKEHSIKVSVGGEK--------------RDLEIEVVLFHPNYNINGK 539
Query: 394 F---------NDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN------CIVTGWGKDK 438
D+ALI L I C P + C
Sbjct: 540 KEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLP 599
Query: 439 FG-----VEGRYQSTLKKVEVKLVP---RNVCQQQLRKTRLGGVFK-----LHDSFICA- 484
+ L + EV + + C++ + K + F+C
Sbjct: 600 AQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTG 659
Query: 485 --SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCG-----------SDTPGV 531
S + + C+GD GGPL+ +R RF QVG++SWG+ +
Sbjct: 660 GVSPYADPNTCRGDSGGPLIVH---KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDF 716
Query: 532 YVDVRKFKKWILDN 545
++++ + W+ +
Sbjct: 717 HINLFQVLPWLKEK 730
Score = 113 bits (283), Expect = 2e-26
Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 30/178 (16%)
Query: 33 PISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDV---TYSVAA 89
+ T + + PW + + + + C +++ LTAAHC D + V+
Sbjct: 457 WEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSV 516
Query: 90 GEWFINGIVEEELEEEQRRDVLDVRIHPNYST---------ETLENNIALLKLSSNIDFD 140
G ++ ++ V HPNY+ E + ++AL+KL + + +
Sbjct: 517 GGE------------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYG 564
Query: 141 DYIHPICLPDWNVTYDSEN------CVITGWGRDSADGGGPLVCPSKEDPTTFFQVGI 192
I PICLP T + C A L +E T +V I
Sbjct: 565 QTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYI 622
Score = 35.4 bits (81), Expect = 0.048
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 164 GWGRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-----------TPDMPGLY-DV 209
++ D GGPL+ + F QVG+ +W VV + ++
Sbjct: 664 YADPNTCRGDSGGPLIVHKRS---RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINL 720
Query: 210 TY 211
Sbjct: 721 FQ 722
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 161 bits (410), Expect = 3e-46
Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 54/258 (20%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW + + + CG L+ P V+TAAHC+ N + G
Sbjct: 10 HSQPWQVLVASR----------GRAVCGGVLVHPQWVLTAAHCIRN----KSVILLGR-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN-----------DIALIILDFPFPVK 409
++ E Q VS + H ++ + N D+ L+ L P +
Sbjct: 54 ---HSLFHPED-TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELT 109
Query: 410 NHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKT 469
+ + + P + E C +GWG + E L+ V++ ++ +VC Q +
Sbjct: 110 DAVKVMDLP-TQEPALGTTCYASGWGSIE-PEEFLTPKKLQCVDLHVISNDVCAQVHPQ- 166
Query: 470 RLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGI-GCG 525
K+ +CA +GG + C GD GGPLVC GI SWG C
Sbjct: 167 ------KVTKFMLCAGRWTGG--KSTCSGDSGGPLVCN-------GVLQGITSWGSEPCA 211
Query: 526 S-DTPGVYVDVRKFKKWI 542
+ P +Y V ++KWI
Sbjct: 212 LPERPSLYTKVVHYRKWI 229
Score = 111 bits (281), Expect = 3e-28
Identities = 49/236 (20%), Positives = 71/236 (30%), Gaps = 80/236 (33%)
Query: 34 ISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWF 93
+ G PW +++ CG L+ P LTAAHC++ + G
Sbjct: 2 VGGWECEKHSQPWQVLVASRG----RAVCGGVLVHPQWVLTAAHCIRNK--SVILLGRHS 55
Query: 94 INGIVEEELEEEQRRDVLDVRIHPNYSTETLENN-----------IALLKLSSNIDFDDY 142
+ E+ Q V HP Y L+N + LL+LS + D
Sbjct: 56 LF--HPED--TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDA 111
Query: 143 IHPICLPDWNVTYDSENCVITGWG------------------------------------ 166
+ + LP + C +GWG
Sbjct: 112 VKVMDLPTQEPALGTT-CYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTK 170
Query: 167 -----------RDS--ADGGGPLVCPSKEDPTTFFQVGIAAW-SVVC-TPDMPGLY 207
+ + D GGPLVC GI +W S C P+ P LY
Sbjct: 171 FMLCAGRWTGGKSTCSGDSGGPLVCNG-------VLQGITSWGSEPCALPERPSLY 219
Score = 70.7 bits (174), Expect = 6e-14
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 229 EEEQRRDVLDVRIHPNYSTETLENN-----------IALLKLSSNIDFDDYIHPICLPDW 277
+ Q V HP Y L+N + LL+LS + D + + LP
Sbjct: 61 DTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQ 120
Query: 278 NVTYDSENCVITGWGR 293
+ C +GWG
Sbjct: 121 EPALGTT-CYASGWGS 135
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 171 bits (433), Expect = 1e-45
Identities = 74/247 (29%), Positives = 113/247 (45%), Gaps = 38/247 (15%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIP-VTDIKVRGGEW 359
+PW +++ T + CG TLI P V+TAAHC+ P + KV G
Sbjct: 571 HSWPWQVSLRTRF---------GMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH 621
Query: 360 DTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPN 419
+ QE VS++++ DIAL+ L P + + + AC P+
Sbjct: 622 QEVNLE------PHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPS 669
Query: 420 SAEEY-DDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLH 478
D C +TGWG+ + LK+ ++ ++ VC + L G ++
Sbjct: 670 PNYVVADRTECFITGWGETQ---GTFGAGLLKEAQLPVIENKVCNR---YEFLNG--RVQ 721
Query: 479 DSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDV 535
+ +CA G D+C+GD GGPLVC K D++ G+ SWG+GC + PGVYV V
Sbjct: 722 STELCA-GHLAGGTDSCQGDSGGPLVCFEK---DKYILQGVTSWGLGCARPNKPGVYVRV 777
Query: 536 RKFKKWI 542
+F WI
Sbjct: 778 SRFVTWI 784
Score = 112 bits (281), Expect = 4e-26
Identities = 59/249 (23%), Positives = 86/249 (34%), Gaps = 70/249 (28%)
Query: 13 NSDPWNHTSAENTEEYDYIEPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIA 72
+ ++ + + + G + +PW + L + CG +LI P
Sbjct: 542 AAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSL---RTRFGMHFCGGTLISPEWV 598
Query: 73 LTAAHCVQYDV---TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIA 129
LTAAHC++ +Y V G + Q +V + + P +IA
Sbjct: 599 LTAAHCLEKSPRPSSYKVILGAHQEVNLEPHV----QEIEVSRLFLEPTR------KDIA 648
Query: 130 LLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWG---------------------- 166
LLKLSS D + P CLP N D C ITGWG
Sbjct: 649 LLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK 708
Query: 167 -------------------------RDSADG--GGPLVCPSKEDPTTFFQVGIAAWSVVC 199
DS G GGPLVC K+ + G+ +W + C
Sbjct: 709 VCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD---KYILQGVTSWGLGC 765
Query: 200 -TPDMPGLY 207
P+ PG+Y
Sbjct: 766 ARPNKPGVY 774
Score = 74.3 bits (182), Expect = 4e-14
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 193 AAWSVVCTPDMPGLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLEN 252
AA C P Y V G + Q +V + + P
Sbjct: 601 AAH---CLEKSPRPSS--YKVILGAHQEVNLEPHV----QEIEVSRLFLEPTR------K 645
Query: 253 NIALLKLSSNIDFDDYIHPICLPDWNVTY-DSENCVITGWGR 293
+IALLKLSS D + P CLP N D C ITGWG
Sbjct: 646 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGE 687
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 158 bits (401), Expect = 5e-45
Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 52/257 (20%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
PW +A+ FQCG L+ P V+TAAHC+++ D ++ G
Sbjct: 10 HSKPWQVAVYHQ----------GHFQCGGVLVHPQWVLTAAHCMSD----DYQIWLGR-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENF-----------EAKTVFNDIALIILDFPFPVK 409
+N + E Q VS ++ F + +D+ L+ L P +
Sbjct: 54 ---HNLSKDED-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARIT 109
Query: 410 NHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKT 469
+ + + P + E C +GWG R TL+ VE++L C +
Sbjct: 110 DAVKILDLP-TQEPKLGSTCYTSGWGLIS-TFTNRGSGTLQCVELRLQSNEKCARAYP-- 165
Query: 470 RLGGVFKLHDSFICASGGPN--QDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIG-CGS 526
K+ + +CA + C GD GG L+C GI SWG C
Sbjct: 166 -----EKMTEFVLCA-THRDDSGSICLGDSGGALICD-------GVFQGITSWGYSECAD 212
Query: 527 -DTPGVYVDVRKFKKWI 542
+ V+ V KKWI
Sbjct: 213 FNDNFVFTKVMPHKKWI 229
Score = 107 bits (270), Expect = 9e-27
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
PW + +++ +F+CG L+ P LTAAHC Y + G ++ +E+
Sbjct: 10 HSKPWQVAVYHQG----HFQCGGVLVHPQWVLTAAHC--MSDDYQIWLGRHNLS--KDED 61
Query: 102 LEEEQRRDVLDVRIHPNY-----------STETLENNIALLKLSSNIDFDDYIHPICLPD 150
Q V D + P + + + +++ LL+L+ D + + LP
Sbjct: 62 --TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPT 119
Query: 151 WNVTYDSENCVITGWGRDSADGG 173
S C +GWG S
Sbjct: 120 QEPKLGST-CYTSGWGLISTFTN 141
Score = 68.8 bits (169), Expect = 2e-13
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 229 EEEQRRDVLDVRIHPNY-----------STETLENNIALLKLSSNIDFDDYIHPICLPDW 277
+ Q V D + P + + + +++ LL+L+ D + + LP
Sbjct: 61 DTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQ 120
Query: 278 NVTYDSENCVITGWGR 293
S C +GWG
Sbjct: 121 EPKLGST-CYTSGWGL 135
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 124 bits (313), Expect = 6e-34
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 36 GRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFIN 95
G G +PW + L + CG SLI N +TAAHC + V AGE+
Sbjct: 4 GEEAVPGSWPWQVSLQDKTG---FHFCGGSLINENWVVTAAHCGV-TTSDVVVAGEFDQG 59
Query: 96 GIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVT- 154
E+ Q+ + V + Y++ T+ N+I LLKLS+ F + +CLP +
Sbjct: 60 SSSEKI----QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF 115
Query: 155 YDSENCVITGWGR 167
CV TGWG
Sbjct: 116 AAGTTCVTTGWGL 128
Score = 100 bits (252), Expect = 2e-25
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 288 ITGWGRDSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNI 347
I G ++ G +PW +++ CG +LI + V+TAAHC
Sbjct: 1 IVN-GEEAVP---GSWPWQVSLQDKT---------GFHFCGGSLINENWVVTAAHCGVT- 46
Query: 348 PVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFP 407
T V GE+D +++ Q+ +++++ + + + T+ NDI L+ L
Sbjct: 47 --TSDVVVAGEFDQGSSSEKI------QKLKIAKVFKNSKYNSLTINNDITLLKLSTAAS 98
Query: 408 VKNHIGLACTPNSAEE-YDDQNCIVTGWGKDKF 439
+ C P+++++ C+ TGWG ++
Sbjct: 99 FSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131
Score = 88.4 bits (220), Expect = 4e-21
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 210 TYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYI 269
+ V AGE+ E+ Q+ + V + Y++ T+ N+I LLKLS+ F +
Sbjct: 48 SDVVVAGEFDQGSSSEKI----QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTV 103
Query: 270 HPICLPDWNVT-YDSENCVITGWGR 293
+CLP + CV TGWG
Sbjct: 104 SAVCLPSASDDFAAGTTCVTTGWGL 128
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 115 bits (291), Expect = 2e-30
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 395 NDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVE-GRYQSTLKKVE 453
+D+ L+ L P + + + + P + E C +GWG + G + + ++ V+
Sbjct: 8 HDLMLLRLQSPAKITDAVKVLELP-TQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQ 66
Query: 454 VKLVPRNVCQQQLRKTRLGGVFKLHDSFICA---SGGPNQDACKGDGGGPLVCQLKNERD 510
+ L+ C K+ +S +CA GG +D C GD GGPL+C N
Sbjct: 67 LTLLQNTFCADAHPD-------KVTESMLCAGYLPGG--KDTCMGDSGGPLIC---NGM- 113
Query: 511 RFTQVGIVSWGIG-CGS-DTPGVYVDVRKFKKWI 542
GI SWG CGS + P +Y + + WI
Sbjct: 114 ---WQGITSWGHTPCGSANKPSIYTKLIFYLDWI 144
Score = 59.9 bits (146), Expect = 6e-11
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 61/139 (43%)
Query: 122 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWG--------------- 166
+ +++ LL+L S D + + LP S C +GWG
Sbjct: 4 KDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGST-CEASGWGSIEPGPDDFEFPDEI 62
Query: 167 ----------------------------------RDS--ADGGGPLVCPSKEDPTTFFQV 190
+D+ D GGPL+C
Sbjct: 63 QCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGM-------WQ 115
Query: 191 GIAAW-SVVC-TPDMPGLY 207
GI +W C + + P +Y
Sbjct: 116 GITSWGHTPCGSANKPSIY 134
Score = 59.5 bits (145), Expect = 7e-11
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 248 ETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSAETFFGEYP 304
+ +++ LL+L S D + + LP S C +GWG E+P
Sbjct: 4 KDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGST-CEASGWGSIEPGPDDFEFP 59
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 109 bits (274), Expect = 6e-29
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 443 GRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLV 502
L++ + L+ C++ K+ D+ ICA G +C GD GGPLV
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWG-------TKIKDAMICA-GASGVSSCMGDSGGPLV 52
Query: 503 CQLKNERDRFTQVGIVSWGIGCGS-DTPGVYVDVRKFKKWILDN 545
C+ + +T VGIVSWG S TPGVY V W+
Sbjct: 53 CK---KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93
Score = 38.3 bits (90), Expect = 7e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 166 GRDS--ADGGGPLVCPSKEDPTTFFQVGIAAWSVVC-TPDMPGLY 207
G S D GGPLVC + + VGI +W + PG+Y
Sbjct: 39 GVSSCMGDSGGPLVC---KKNGAWTLVGIVSWGSSTCSTSTPGVY 80
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 68.9 bits (168), Expect = 1e-13
Identities = 33/244 (13%), Positives = 61/244 (25%), Gaps = 51/244 (20%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
P+ +T C TLI P+ ++T HCV + R
Sbjct: 15 RVAPYNSI---------AYITFGGSSCTGTLIAPNKILTNGHCVY-----NTASRSYSAK 60
Query: 361 TITNNRTDREPFPYQERTVSQIYIHEN-FEAKTVFNDIALIILDFPFP-VKNHIGLACTP 418
+ +++ Y+ D A+I D + +
Sbjct: 61 GSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIR--- 117
Query: 419 NSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLH 478
++G+ DK G+ + TR +
Sbjct: 118 -QVTNLTGTTIKISGYPGDKMRSTGKVSQ--------------WEMSGSVTREDTNLAYY 162
Query: 479 DSFICASGGPNQDACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVDVRKF 538
D G+ G ++ VG+ + G G+ G F
Sbjct: 163 TI----------DTFSGNSGSAML------DQNQQIVGVHNAGYSNGTINGGPKAT-AAF 205
Query: 539 KKWI 542
++I
Sbjct: 206 VEFI 209
Score = 58.8 bits (142), Expect = 4e-10
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 8/137 (5%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
P+ + + C +LI PN LT HCV + S +A G+ +
Sbjct: 15 RVAPYNSIAYITFGGS---SCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDST 71
Query: 102 LEEEQRRDVLDVRIHPNYSTETLENN-IALLKLSSNIDFDDYIHPICLPDWNVTYDSENC 160
++ + + Y A++K +NI + + +
Sbjct: 72 -AVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNI--GNTVGYRSIRQVTNLTG-TTI 127
Query: 161 VITGWGRDSADGGGPLV 177
I+G+ D G +
Sbjct: 128 KISGYPGDKMRSTGKVS 144
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 62.9 bits (154), Expect = 9e-13
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 42 GEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEE 101
PW + +++Y F+CG L+ P LTAAHC Y V G + + E E
Sbjct: 10 NSHPWQVAIYHYSS----FQCGGVLVNPKWVLTAAHCKND--NYEVWLGR---HNLFENE 60
Query: 102 LEEEQRRDVLDVRIHPNYS 120
Q V HP ++
Sbjct: 61 -NTAQFFGVTADFPHPGFN 78
Score = 61.0 bits (149), Expect = 5e-12
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 301 GEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWD 360
+PW +AI + FQCG L+ P V+TAAHC N+ + +V G
Sbjct: 10 NSHPWQVAIYHY----------SSFQCGGVLVNPKWVLTAAHCKND----NYEVWLGR-- 53
Query: 361 TITNNRTDREPFPYQERTVSQIYIHENF 388
+N + E Q V+ + H F
Sbjct: 54 ---HNLFENEN-TAQFFGVTADFPHPGF 77
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 57.8 bits (139), Expect = 1e-09
Identities = 28/214 (13%), Positives = 54/214 (25%), Gaps = 47/214 (21%)
Query: 325 FQCGATLILPH---VVMTAAHCVNN----IPVTDIKVRGGEWDTITNNRTDREPFPYQER 377
F C A ++ V TA HC+++ + D +
Sbjct: 21 FVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPA---------YDYGESEHGVW 71
Query: 378 TVSQIYIHENF-EAKTVFNDIALIILDFPFP--VKNHIGLACTPNSAEEYDDQNCIVTGW 434
++ + +D A +L+ V+ +G A +P + + Q G+
Sbjct: 72 AAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTA-SPIAFNQPRGQYYSAYGY 130
Query: 435 GKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACK 494
G+ + C +G + +
Sbjct: 131 PAAA-PFNGQELHS-------------CHGTATNDPMGSSTQGIPC----------NMTG 166
Query: 495 GDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDT 528
G GGP Q S+G +
Sbjct: 167 GSSGGPWFL---GNGTGGAQNSTNSYGYTFLPNV 197
Score = 47.0 bits (111), Expect = 5e-06
Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 25/176 (14%)
Query: 43 EFPWMLV--LFYYKRNMEYFKCGASLI---GPNIALTAAHCVQYDVTYSVAAGEWFINGI 97
+ +F+ ++ C A+++ + TA HC+ + G++ N +
Sbjct: 3 PADSPHIGKVFFSTNQGDFV-CSANIVASANQSTVATAGHCL-----HDGNGGQFARNFV 56
Query: 98 V----EEELEEEQRRDVLDVRIHPNYS-TETLENNIALLKLSSNID--FDDYIHPICLPD 150
+ E ++ ++ E++ A L + +
Sbjct: 57 FAPAYDYGESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIA 116
Query: 151 WNVTYDSENCVITGWGRDSADGGGPLV-CPSKEDPTTFFQVGIAAWSVVCTPDMPG 205
+N + G+ + G L C T +G + + C +M G
Sbjct: 117 FNQPRG-QYYSAYGYPAAAPFNGQELHSCHG---TATNDPMGSSTQGIPC--NMTG 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 1e-06
Identities = 86/608 (14%), Positives = 162/608 (26%), Gaps = 203/608 (33%)
Query: 25 TEEYDYI--EPISGRNTYFGEFPWMLVLFYYKRNMEYFKCGASLIGPNIALTAAHCVQYD 82
EE D+I + T W L L + ++ F ++ N Y
Sbjct: 48 KEEIDHIIMSKDAVSGTLR--LFWTL-LSKQEEMVQKFV--EEVLRIN----------YK 92
Query: 83 VTYSVAAGEWFINGIVEEELEE-------EQRRDVL--DVRIHPNYSTETLE--NNI--A 129
+ ++ I E+ + ++RD L D ++ Y+ L+ + A
Sbjct: 93 ---------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 130 LLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADGGG-----PLVCPSKEDP 184
LL+L +N +I G G G VC
Sbjct: 144 LLELRPA---------------------KNVLIDGVL-----GSGKTWVALDVC-LSYKV 176
Query: 185 TTFFQVGIAAW-SV--VCTPD-----MPGLY---DVTYSVAAGEWFINGIVEEELEEEQR 233
I W ++ +P+ + L D ++ + + N + + +
Sbjct: 177 QCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAEL 234
Query: 234 RDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENC---VITG 290
R +L + + N LL L + + +N+ +C + T
Sbjct: 235 RRLLKSKPYEN----------CLLVL------LNVQNAKAWNAFNL-----SCKILLTT- 272
Query: 291 WGRDSAETFFGEYPWMMAILTNKINKDGSVTE--------NVFQCG-------ATLILP- 334
R T F I + + ++T C P
Sbjct: 273 --RFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 335 HVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDR---------EPFPYQERTVSQIYIH 385
+ + A + + D W + ++ EP Y++
Sbjct: 329 RLSIIAESIRDGLATWD------NWKHVNCDKLTTIIESSLNVLEPAEYRKM-------- 374
Query: 386 ENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQN--------CIVTGWGKD 437
F+ +VF A I P + L+ + D +V K+
Sbjct: 375 --FDRLSVFPPSAHI----PTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 438 -KFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGD 496
+ Y K+E + L + + + + +F P D
Sbjct: 424 STISIPSIYLELKVKLENE--------YALHR-SIVDHYNIPKTFDSDDLIPPYL----D 470
Query: 497 G------GGPLVCQLKNERD----------RFTQVGIVSWGI--GCGSDTPGVYVDVRKF 538
G L ER RF + I ++ +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 539 KKWILDNS 546
K +I DN
Sbjct: 531 KPYICDND 538
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 44.0 bits (103), Expect = 6e-05
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
++ ++T H V+ + +++ +P T QI +
Sbjct: 36 ASGVVVGKDTLLTNKHVVDA------THGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 89
Query: 387 NFEAKTVFNDIALIILDFPF---PVKNHIGLACTPNSAEEYDDQNCIVTGWGKDK 438
D+A++ + + A N+AE +QN VTG+ DK
Sbjct: 90 G------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDK 138
Score = 40.2 bits (93), Expect = 0.001
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 62 CGASLIGPNIALTAAHCVQYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYST 121
++G + LT H V D T+ + ++ + +
Sbjct: 36 ASGVVVGKDTLLTNKHVV--DATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG--- 90
Query: 122 ETLENNIALLKLSSNID---FDDYIHPICLPDWNVTYDSENCVITGWGRDSADG 172
E ++A++K S N + + P + + T ++N +TG+ D
Sbjct: 91 ---EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVA 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 3e-04
Identities = 100/533 (18%), Positives = 160/533 (30%), Gaps = 183/533 (34%)
Query: 93 FINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPI---CLP 149
+++ +VE + Q VL++ EN L N D IH + L
Sbjct: 67 YVSSLVEPS-KVGQFDQVLNL------CLTEFENCY----LEGN----D-IHALAAKLLQ 110
Query: 150 DWNVTYDSENCVITGWGRDSADGGGPLVCPSKEDPTTFFQ------VGIAA------WSV 197
+ + T +I + P K+ + F+ + A +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPF---DKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 198 VCTPDMPGLYDVTYSVAAGEWFINGIVEEELEEEQRRDVLDVRIHPNYSTETLENNIALL 257
++ LY TY V G+ E L E R + ++ + L N + L
Sbjct: 168 DYFEELRDLYQ-TYHVLVGDLIKF--SAETLSELIRTTLDAEKVFT----QGL-NILEWL 219
Query: 258 KLSSNIDFDDYIH--PICLP--------DWNVTYDSENCVITGW-------------GR- 293
+ SN DY+ PI P + VT + G+ G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-----AKLLGFTPGELRSYLKGATGHS 274
Query: 294 ------------DSAETFFGEYPWMMAILTNKINKDGSVTENVFQCGATLILPHVVMTAA 341
DS E+FF + +L F G
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVL--------------FFIG------------V 308
Query: 342 HCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFNDIALII 401
C P T + E D++ NN P P + I N + V + +
Sbjct: 309 RCYEAYPNTSLPPSILE-DSLENNEG--VPSP-------MLSI-SNLTQEQVQDYVNKTN 357
Query: 402 LDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFGVEGRYQSTLKKVEVKLVPRNV 461
P + I L N A +N +V+G + +G+ TL+K + P +
Sbjct: 358 SHLPAGKQVEISLV---NGA-----KNLVVSGPPQSLYGL----NLTLRKAK---APSGL 402
Query: 462 CQQQL----RKTRLGGVFKL------HDSF-ICASGGPNQDACKGDGGGPLVCQLKNERD 510
Q ++ RK + F L H + AS N+D K +
Sbjct: 403 DQSRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNN-------------- 447
Query: 511 RFTQVGIVSWGIGCGSD--TPGVY-----VDVRKFKKWILDNSHGKIIDTRIR 556
VS+ D P VY D+R I + I+D IR
Sbjct: 448 -------VSFN---AKDIQIP-VYDTFDGSDLRVLSGSISER----IVDCIIR 485
Score = 30.4 bits (68), Expect = 2.0
Identities = 35/215 (16%), Positives = 50/215 (23%), Gaps = 91/215 (42%)
Query: 81 YDVTYSVAAGEW------------F-INGIVEEELEE-------EQRRDVLDVRIHPNYS 120
Y T A W F I IV E+ + RI NYS
Sbjct: 1636 YK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-----RIRENYS 1689
Query: 121 TETLENNIALLKLSSNIDFDDYIHPICLPDWNVTYDSENCVITGWGRDSADGGGPLVCPS 180
E + + I F + + T+ SE G L
Sbjct: 1690 AMIFETIVDGKLKTEKI-FKEINEHST----SYTFRSEK--------------GLL---- 1726
Query: 181 KEDPTTFFQVGIAAWSVVCTPDM--PGLYDVTYSVAA---GEWFINGIVEEELEEEQRRD 235
T F Q + D+ GL + A GE
Sbjct: 1727 --SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE------------------ 1766
Query: 236 VLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIH 270
Y+ AL L+ + + +
Sbjct: 1767 ---------YA--------ALASLADVMSIESLVE 1784
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 38.1 bits (88), Expect = 0.005
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 327 CGATLILPHVVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHE 386
++ ++T H V+ + +++ +P T QI +
Sbjct: 36 ASGVVVGKDTLLTNKHVVDA------THGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 89
Query: 387 NFEAKTVFNDIALIILDFPF---PVKNHIGLACTPNSAEEYDDQNCIVTGWGKDK 438
D+A++ + + A N+AE +QN VTG+ DK
Sbjct: 90 G------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK 138
Score = 35.0 bits (80), Expect = 0.041
Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 25/140 (17%)
Query: 62 CGASLIGPNIALTAAHCV--QYDVTYSVAAGEWFINGIVEEELEEEQRRDV-----LD-- 112
++G + LT H V + +++ A IN + D
Sbjct: 36 ASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLA 95
Query: 113 -VRIHPNYSTETLENNIALLKL--SSNIDFDDYI----HPICLPDWNVTYDSENCVITGW 165
V+ PN + + + + ++ + I +P P ++S+ +
Sbjct: 96 IVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPV-ATMWESKGKITYLK 154
Query: 166 GR------DSADG--GGPLV 177
G + G G P+
Sbjct: 155 GEAMQYDLSTTGGNSGSPVF 174
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 33.9 bits (76), Expect = 0.12
Identities = 29/223 (13%), Positives = 52/223 (23%), Gaps = 34/223 (15%)
Query: 320 VTENVFQCGATLI------LPHVVMTAAHCVNNIPVTD--IKVRGGEWDTITNNRTDREP 371
C +L+ +TA HC T I V ++
Sbjct: 29 SKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPAS 88
Query: 372 FPYQERTVSQIYIHENFEAKTVFNDIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIV 431
+ ++SQ +A +D L+ L+ N
Sbjct: 89 GANGDGSMSQTQSGSTVKATYATSDFTLLELNNAAN-----------------PAFNLFW 131
Query: 432 TGWGKDKFGVEGRYQSTLKKVEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQD 491
GW + G V K + + G + + P+
Sbjct: 132 AGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAG----TTHLNVQWQPSGG 187
Query: 492 ACKGDGGGPLVCQLKNERDRFTQVGIVSWGIGCGSDTPGVYVD 534
+ G + + +G + G S T D
Sbjct: 188 VTEPGSSGSPIYSPEKR-----VLGQLHGGPSSCSATGTNRSD 225
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 30.6 bits (70), Expect = 1.5
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 240 RIHPNY-STET-LENNIALLKLSSNI----DFDDYIHPICLPDWNVTYDSENCVITGWGR 293
P Y E L A +L+ NI Y +P N+ YD++ T +
Sbjct: 449 AYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIP 508
Query: 294 DSAETFF 300
+
Sbjct: 509 YHFRPNY 515
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 29.5 bits (65), Expect = 3.7
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 101 ELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 152
L E R +LD H + + + + ++ + L W
Sbjct: 314 ALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365
Score = 29.5 bits (65), Expect = 3.7
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 227 ELEEEQRRDVLDVRIHPNYSTETLENNIALLKLSSNIDFDDYIHPICLPDWN 278
L E R +LD H + + + + ++ + L W
Sbjct: 314 ALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 28.9 bits (65), Expect = 5.3
Identities = 9/71 (12%), Positives = 15/71 (21%), Gaps = 14/71 (19%)
Query: 22 AENTEEYDYIEPISGRNTYFGEFPWMLVLF---------YYKRNMEYF-KCGASLIGPNI 71
AE+ E + G + Y + G ++
Sbjct: 242 AEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELG--VLAAR- 298
Query: 72 ALTAAHCVQYD 82
T H V
Sbjct: 299 -PTLVHMVNVT 308
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 28.7 bits (65), Expect = 5.8
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 241 IHPNY-STET-LENNIALLKLSSNI----DFDDYIHPICLPDWNVTYDSENCVITGWGRD 294
P + E L A KL+ ++ +Y LP +N+ ++ + +
Sbjct: 454 NDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETLPGYNLVQNATLSQWSDYVLQ 513
Query: 295 SAETFF 300
+ +
Sbjct: 514 NFRPNW 519
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 27.9 bits (62), Expect = 6.6
Identities = 30/201 (14%), Positives = 45/201 (22%), Gaps = 60/201 (29%)
Query: 336 VVMTAAHCVNNIPVTDIKVRGGEWDTITNNRTDREPFPYQERTVSQIYIHENFEAKTVFN 395
+TA HC N G FP N
Sbjct: 27 YFVTAGHCTNISANWSASSGGSVVGVREGTS-----FPT--------------------N 61
Query: 396 DIALIILDFPFPVKNHIGLACTPNSAEEYDDQNCIVTGWGKDKFG----VEGRYQSTLKK 451
D ++ + L Y+ ++ G G + +
Sbjct: 62 DYGIVRYTDGSSPAGTVDL---------YNGSTQDISSAANAVVGQAIKKSGST-TKVTS 111
Query: 452 VEVKLVPRNVCQQQLRKTRLGGVFKLHDSFICASGGPNQDACKGDGGGPLVCQLKNERDR 511
V V V G V+ + + C++G GD GG
Sbjct: 112 GTVTAVNVTVNYGD------GPVYNMVRTTACSAG--------GDSGGAHF-------AG 150
Query: 512 FTQVGIVSWGIGCGSDTPGVY 532
+GI S GC
Sbjct: 151 SVALGIHSGSSGCSGTAGSAI 171
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 28.4 bits (64), Expect = 7.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 HVVMTAAHCVNNIPVTDIKVRGGEWD 360
HVVMT V N ++ +W+
Sbjct: 126 HVVMTMLVLVRNFVPAHEQIINHDWE 151
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 27.9 bits (63), Expect = 9.4
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 20/69 (28%)
Query: 172 GGGPLVCPSKEDPTTFFQVGIAAWSVVCTPDMPGLYDVTYSVAAGEWFINGIVEEELEEE 231
GG PL G+AA + + + G WF+ E+L
Sbjct: 285 GGNPLAM----------AAGVAAIRYLERTRLW-----ERAAELGPWFM-----EKLRAI 324
Query: 232 QRRDVLDVR 240
+ +VR
Sbjct: 325 PSPKIREVR 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.438
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,045,723
Number of extensions: 556297
Number of successful extensions: 2602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1586
Number of HSP's successfully gapped: 391
Length of query: 559
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 461
Effective length of database: 3,965,535
Effective search space: 1828111635
Effective search space used: 1828111635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)