BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1009
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P79937|MEIS1_XENLA Homeobox protein Meis1 OS=Xenopus laevis GN=meis1 PE=1 SV=1
Length = 390
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/49 (95%), Positives = 48/49 (97%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 79 YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 127
>sp|Q60954|MEIS1_MOUSE Homeobox protein Meis1 OS=Mus musculus GN=Meis1 PE=1 SV=1
Length = 390
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 57/72 (79%), Gaps = 6/72 (8%)
Query: 59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
TN + SSV+ AL + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct: 56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115
Query: 113 SFNEDIAVFSKQ 124
SFNEDIAVF+KQ
Sbjct: 116 SFNEDIAVFAKQ 127
>sp|O00470|MEIS1_HUMAN Homeobox protein Meis1 OS=Homo sapiens GN=MEIS1 PE=1 SV=1
Length = 390
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 57/72 (79%), Gaps = 6/72 (8%)
Query: 59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
TN + SSV+ AL + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct: 56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115
Query: 113 SFNEDIAVFSKQ 124
SFNEDIAVF+KQ
Sbjct: 116 SFNEDIAVFAKQ 127
>sp|O46339|HTH_DROME Homeobox protein homothorax OS=Drosophila melanogaster GN=hth PE=1
SV=1
Length = 487
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLALIFEKCELATCTPREPGV GGDVCSSESFNEDIA+FSKQ
Sbjct: 98 YEHPLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQ 146
>sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE=1 SV=2
Length = 477
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/49 (89%), Positives = 48/49 (97%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATCTPREPGVAGGDVCSS+SFNEDIAVF+KQ
Sbjct: 81 YGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ 129
>sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE=1 SV=2
Length = 477
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/49 (89%), Positives = 48/49 (97%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATCTPREPGVAGGDVCSS+SFNEDIAVF+KQ
Sbjct: 81 YGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ 129
>sp|Q6DIF3|MEIS3_XENTR Homeobox protein meis3 OS=Xenopus tropicalis GN=meis3 PE=2 SV=2
Length = 453
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREP--GVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATC+PR+ GGDVCSS+SFNEDIAVF+KQ
Sbjct: 71 YGHPLFPLLALVFEKCELATCSPRDNSGSFPGGDVCSSDSFNEDIAVFAKQ 121
>sp|Q7ZY13|MEI3B_XENLA Homeobox protein meis3-B OS=Xenopus laevis GN=meis3-b PE=2 SV=2
Length = 451
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREP--GVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATC+PR+ GGDVCSS+SFNEDIAVF+KQ
Sbjct: 71 YGHPLFPLLALVFEKCELATCSPRDNSGSFPGGDVCSSDSFNEDIAVFAKQ 121
>sp|Q5U4X3|MEI3A_XENLA Homeobox protein meis3-A OS=Xenopus laevis GN=meis3-a PE=2 SV=1
Length = 453
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREP--GVAGGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATC+PR+ GGDVCSS+SFNEDIAVF+KQ
Sbjct: 71 YGHPLFPLLALVFEKCELATCSPRDNSGSFPGGDVCSSDSFNEDIAVFAKQ 121
>sp|P97368|MEIS3_MOUSE Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE=2 SV=2
Length = 378
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 44/55 (80%), Gaps = 6/55 (10%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVA------GGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATC+PR+ A GGDVCSS+SFNEDIA F+KQ
Sbjct: 64 YGHPLFPLLALVFEKCELATCSPRDGASAGLGSPPGGDVCSSDSFNEDIAAFAKQ 118
>sp|Q99687|MEIS3_HUMAN Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3
Length = 375
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 44/55 (80%), Gaps = 6/55 (10%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVA------GGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATC+PR+ A GGDVCSS+SFNEDIA F+KQ
Sbjct: 61 YGHPLFPLLALVFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQ 115
>sp|A8K0S8|ME3L2_HUMAN Putative homeobox protein Meis3-like 2 OS=Homo sapiens GN=MEIS3P2
PE=2 SV=1
Length = 358
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 6/55 (10%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREPGVA------GGDVCSSESFNEDIAVFSKQ 124
+ HPLFPLLAL+FEKCELATC+PR+ A GGDVCSS+SFNED F+KQ
Sbjct: 61 YGHPLFPLLALVFEKCELATCSPRDGAGAGLGTPRGGDVCSSDSFNEDNTAFAKQ 115
>sp|A8WL06|UNC62_CAEBR Homeobox protein unc-62 OS=Caenorhabditis briggsae GN=unc-62 PE=3
SV=2
Length = 725
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREP---GVAGGDVCSSESFNEDIAVFSKQ 124
+ HPL+PLL ++FEKCELAT TPRE G DVCSS SF +D+ F K
Sbjct: 101 YAHPLYPLLVVLFEKCELATSTPRETSRDGTTSSDVCSSASFKDDLNEFVKH 152
>sp|Q9N5D6|UNC62_CAEEL Homeobox protein unc-62 OS=Caenorhabditis elegans GN=unc-62 PE=1
SV=1
Length = 564
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 76 FRHPLFPLLALIFEKCELATCTPREP---GVAGGDVCSSESFNEDIAVFSKQ 124
+ HPL+PLL L+FEKCELAT TPR+ G DVCSS SF +D+ F +
Sbjct: 101 YAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRH 152
>sp|A6NDR6|ME3L1_HUMAN Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1
PE=5 SV=2
Length = 274
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 92 ELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
EL PR GGDVCSS+SFNED F+KQ
Sbjct: 4 ELGWGHPR-----GGDVCSSDSFNEDNTAFAKQ 31
>sp|Q01175|VP5_EHDV1 Outer capsid protein VP5 OS=Epizootic hemorrhagic disease virus 1
GN=S5 PE=3 SV=1
Length = 527
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 19 PRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQ 62
P KE I+D+ G Q M+L+ L +NRNE + +LP R+
Sbjct: 290 PTKEEIKDLSLVEGIQ--MKLQNLEENRNEVLHIQEEILPKLRE 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,399,656
Number of Sequences: 539616
Number of extensions: 1641488
Number of successful extensions: 4306
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4279
Number of HSP's gapped (non-prelim): 22
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)