Query psy1009
Match_columns 129
No_of_seqs 134 out of 178
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 17:38:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02178 AT_hook: AT hook moti 93.2 0.035 7.6E-07 27.1 0.5 10 13-22 1-10 (13)
2 smart00384 AT_hook DNA binding 90.9 0.11 2.4E-06 29.8 0.9 13 13-25 1-13 (26)
3 PF03790 KNOX1: KNOX1 domain ; 85.9 0.75 1.6E-05 29.4 2.3 26 70-95 2-27 (45)
4 PF05570 DUF765: Circovirus pr 53.3 8.4 0.00018 22.3 1.1 16 3-18 12-27 (29)
5 PF02327 BChl_A: Bacteriochlor 46.3 6 0.00013 34.3 -0.2 15 71-85 275-289 (357)
6 PF14621 RFX5_DNA_bdg: RFX5 DN 45.0 7.9 0.00017 31.7 0.2 12 11-22 66-77 (219)
7 PF07797 DUF1639: Protein of u 30.0 28 0.00061 22.7 1.0 24 10-34 13-36 (50)
8 KOG1473|consensus 28.4 28 0.0006 35.4 1.1 12 12-23 5-16 (1414)
9 PF15630 CENP-S: Kinetochore c 26.9 86 0.0019 21.6 3.0 22 83-124 34-55 (76)
10 PHA03163 hypothetical protein; 26.2 63 0.0014 23.5 2.3 34 90-123 26-59 (92)
11 cd01137 PsaA Metal binding pro 25.4 70 0.0015 26.2 2.8 60 26-85 132-191 (287)
12 cd00119 LYZ1 C-type lysozyme ( 23.9 24 0.00052 26.6 -0.2 9 87-95 2-10 (123)
13 PF08780 NTase_sub_bind: Nucle 23.1 1.6E+02 0.0035 21.5 4.1 57 24-92 63-123 (124)
14 PF10488 PP1c_bdg: Phosphatase 23.1 86 0.0019 27.2 3.0 37 38-77 269-305 (307)
15 PF00062 Lys: C-type lysozyme/ 22.6 21 0.00046 26.8 -0.7 7 88-94 3-9 (125)
16 COG1777 Predicted transcriptio 22.5 35 0.00077 28.2 0.5 14 11-24 62-75 (217)
17 PF10023 DUF2265: Predicted am 20.8 1.1E+02 0.0025 26.7 3.3 41 77-127 159-199 (337)
18 PF03792 PBC: PBC domain; Int 20.4 1.4E+02 0.0029 24.4 3.4 21 68-88 26-46 (191)
No 1
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=93.17 E-value=0.035 Score=27.10 Aligned_cols=10 Identities=60% Similarity=1.142 Sum_probs=4.2
Q ss_pred ccCCCCCCcc
Q psy1009 13 TNQRGRPRKE 22 (129)
Q Consensus 13 KRpRGRPRkR 22 (129)
+|+||||++.
T Consensus 1 ~r~RGRP~k~ 10 (13)
T PF02178_consen 1 KRKRGRPRKN 10 (13)
T ss_dssp S--SS--TT-
T ss_pred CCcCCCCccc
Confidence 5899999974
No 2
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=90.91 E-value=0.11 Score=29.82 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=10.1
Q ss_pred ccCCCCCCcccHH
Q psy1009 13 TNQRGRPRKEYIR 25 (129)
Q Consensus 13 KRpRGRPRkRW~D 25 (129)
+|+||||+|.=.+
T Consensus 1 kRkRGRPrK~~~~ 13 (26)
T smart00384 1 KRKRGRPRKAPKD 13 (26)
T ss_pred CCCCCCCCCCCCc
Confidence 5899999986443
No 3
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=85.93 E-value=0.75 Score=29.36 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred hhhhhhhcCCchHHHHHHHHHhhhhh
Q psy1009 70 VHCALCFRHPLFPLLALIFEKCELAT 95 (129)
Q Consensus 70 ~~~~~i~~hplfpll~llfekce~at 95 (129)
.=|+.|..||+||-|-.-+=-|-.--
T Consensus 2 ~iKA~I~~HP~Y~~Ll~Ayi~C~KVG 27 (45)
T PF03790_consen 2 AIKAKIASHPLYPRLLAAYIDCQKVG 27 (45)
T ss_pred hHHHHHHcCCCcHHHHHHHHHHHhcC
Confidence 34889999999998876666675543
No 4
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=53.32 E-value=8.4 Score=22.34 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=12.9
Q ss_pred hhhhhcccccccCCCC
Q psy1009 3 LTLIEGMVEGTNQRGR 18 (129)
Q Consensus 3 K~ilegkp~GKRpRGR 18 (129)
..|+..+|+.+||.||
T Consensus 12 sdils~~pqs~rppgr 27 (29)
T PF05570_consen 12 SDILSSKPQSKRPPGR 27 (29)
T ss_pred HHHHhcCccccCCCCC
Confidence 4578888999988886
No 5
>PF02327 BChl_A: Bacteriochlorophyll A protein; InterPro: IPR003426 Bacteriochlorophyll A (or FMO) protein is involved in the energy transfer system of photosynthetic bacteria, such as Green Sulphur Bacteria. Bacteriochlorophyll A acts as a light-harvesting complex that directs light energy from the chlorosomes attached to the cell membrane to the reaction centre []. The protein forms a homotrimer, with each monomer unit containing seven molecules of bacteriochlorophyll A.; GO: 0015979 photosynthesis; PDB: 3EOJ_A 3ENI_C 3BSD_A.
Probab=46.27 E-value=6 Score=34.26 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=8.6
Q ss_pred hhhhhhcCCchHHHH
Q psy1009 71 HCALCFRHPLFPLLA 85 (129)
Q Consensus 71 ~~~~i~~hplfpll~ 85 (129)
.+++|.+|||.||.-
T Consensus 275 g~rrilnhpliplvH 289 (357)
T PF02327_consen 275 GLRRILNHPLIPLVH 289 (357)
T ss_dssp TEEEE----CHHHHH
T ss_pred cchhhhcCCccceee
Confidence 357899999999964
No 6
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=44.98 E-value=7.9 Score=31.72 Aligned_cols=12 Identities=50% Similarity=1.049 Sum_probs=10.6
Q ss_pred ccccCCCCCCcc
Q psy1009 11 EGTNQRGRPRKE 22 (129)
Q Consensus 11 ~GKRpRGRPRkR 22 (129)
+.||.||||||.
T Consensus 66 dAKRKRGRPRKK 77 (219)
T PF14621_consen 66 DAKRKRGRPRKK 77 (219)
T ss_pred hhhhhcCCCccC
Confidence 689999999974
No 7
>PF07797 DUF1639: Protein of unknown function (DUF1639); InterPro: IPR012438 This approximately 50-residue region is found in a number of sequences derived from hypothetical plant proteins. This region features a highly basic 5 amino-acid stretch towards its centre.
Probab=30.00 E-value=28 Score=22.71 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=17.2
Q ss_pred cccccCCCCCCcccHHHHHHHhccC
Q psy1009 10 VEGTNQRGRPRKEYIRDVETAMGYQ 34 (129)
Q Consensus 10 p~GKRpRGRPRkRW~D~Vk~Dl~~~ 34 (129)
+.|.||..||+||=+. |.+.+..+
T Consensus 13 m~G~kpprRPkKRpk~-Vqk~ld~l 36 (50)
T PF07797_consen 13 MTGSKPPRRPKKRPKN-VQKQLDSL 36 (50)
T ss_pred HhCCCCCCCCCcccHH-HHHHHhhc
Confidence 4689999999998664 55555544
No 8
>KOG1473|consensus
Probab=28.42 E-value=28 Score=35.42 Aligned_cols=12 Identities=50% Similarity=0.728 Sum_probs=7.7
Q ss_pred cccCCCCCCccc
Q psy1009 12 GTNQRGRPRKEY 23 (129)
Q Consensus 12 GKRpRGRPRkRW 23 (129)
+-|||||||||=
T Consensus 5 ~arpRGRp~k~p 16 (1414)
T KOG1473|consen 5 VARPRGRPRKRP 16 (1414)
T ss_pred CCCCCCCCCCCC
Confidence 456777777653
No 9
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=26.93 E-value=86 Score=21.57 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCCCCcCCCcchHHHHHHHHhh
Q psy1009 83 LLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124 (129)
Q Consensus 83 ll~llfekce~at~~~~~~~~~~~~~~~~~sf~~d~~~f~~~ 124 (129)
|-.|.|.+|+ +|..|+.+|+++
T Consensus 34 l~ELv~~q~~--------------------~~a~DLe~FAkH 55 (76)
T PF15630_consen 34 LTELVYKQLE--------------------NLAKDLEAFAKH 55 (76)
T ss_dssp HHHHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------HHHHHHHHHHHh
Confidence 4458999887 356899999885
No 10
>PHA03163 hypothetical protein; Provisional
Probab=26.23 E-value=63 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=28.0
Q ss_pred HhhhhhcCCCCCCCCCCCcCCCcchHHHHHHHHh
Q psy1009 90 KCELATCTPREPGVAGGDVCSSESFNEDIAVFSK 123 (129)
Q Consensus 90 kce~at~~~~~~~~~~~~~~~~~sf~~d~~~f~~ 123 (129)
-|...|..|.+...--+..|++|.|.--+..|.-
T Consensus 26 ~~~~n~t~p~~~~~FYs~~C~ADtY~psL~SFSS 59 (92)
T PHA03163 26 LCQNNSTTPHDFDMFHQYDCNADRFAPQLLSFSS 59 (92)
T ss_pred HHhcCCCCCCCCcccccCCCCcccccchHHHHHH
Confidence 4677777788877777788999999999999875
No 11
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.41 E-value=70 Score=26.19 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHhccCChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhcCCchHHHH
Q psy1009 26 DVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLA 85 (129)
Q Consensus 26 ~Vk~Dl~~~~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~hplfpll~ 85 (129)
.|.+.|..+..++-.....|-+.+..-+.+....-.+.++......+..+..||-|.-|+
T Consensus 132 ~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~ 191 (287)
T cd01137 132 NIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFATIPAEKRKLVTSEGAFSYFA 191 (287)
T ss_pred HHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCEEEEecccHHHHH
Confidence 444444444444433444455555544444444333333333334567888999998876
No 12
>cd00119 LYZ1 C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycan of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.
Probab=23.92 E-value=24 Score=26.56 Aligned_cols=9 Identities=67% Similarity=1.302 Sum_probs=4.9
Q ss_pred HHHHhhhhh
Q psy1009 87 IFEKCELAT 95 (129)
Q Consensus 87 lfekce~at 95 (129)
+|++||||-
T Consensus 2 ~~~rCeLa~ 10 (123)
T cd00119 2 IFTRCELAK 10 (123)
T ss_pred cCcHhHHHH
Confidence 355666653
No 13
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=23.10 E-value=1.6e+02 Score=21.45 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=33.6
Q ss_pred HHHHHHHhccC---ChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhh-hhhhcCCchHHHHHHHHHhh
Q psy1009 24 IRDVETAMGYQ---NYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHC-ALCFRHPLFPLLALIFEKCE 92 (129)
Q Consensus 24 ~D~Vk~Dl~~~---~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~-~~i~~hplfpll~llfekce 92 (129)
+|.+++-.+.. +.+.|.++..+|... +|+|+......= ..| ..-.+|++.-|.++.|
T Consensus 63 r~~~r~A~~~glI~d~e~Wl~m~~~RN~t-----------sHtYde~~a~~i~~~I-~~~y~~~~~~L~~~l~ 123 (124)
T PF08780_consen 63 RDVFREAFKAGLIDDGEIWLDMLEDRNLT-----------SHTYDEETAEEIYERI-PDDYLPLFKELLEKLE 123 (124)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHG-----------GGTTSHHHHHHHHHTH-H-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccc-----------cCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 66666666542 455677777777665 888864322211 223 2356788887777655
No 14
>PF10488 PP1c_bdg: Phosphatase-1 catalytic subunit binding region; InterPro: IPR019523 This entry represents the conserved C terminus of the regulatory subunit (15A and 15B) of protein phosphatase 1. This C-terminal domain appears to be a binding region for the catalytic subunit (PP1C) of protein phosphatase-1, which may in some circumstances also be retroviral in origin since it is found in both herpes simplex virus and in mouse and man. This domain is found in Gadd-34 apoptosis-associated proteins as well as the constitutive repressor of eIF2-alpha phosphorylation/protein phosphatase 1, regulatory (inhibitor) subunit 15b, otherwise known as CReP. Diverse stressful conditions are associated with phosphorylation of the alpha-subunit of eukaryotic translation initiation factor 2 (eIF2-alpha) on serine 51. This signaling event, which is conserved from yeast to mammals, negatively regulates the guanine nucleotide exchange factor, eIF2-B and inhibits the recycling of eIF2 to its active GTP bound form. In mammalian cells eIF2-alpha phosphorylation emerges as an important event in stress signaling that impacts on gene expression at both the translational and transcriptional levels [].
Probab=23.07 E-value=86 Score=27.23 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhc
Q psy1009 38 ELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFR 77 (129)
Q Consensus 38 ~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~ 77 (129)
.|+++|.||.+.++.|....+.=.-++. ..++..||.
T Consensus 269 ~WE~~ArDR~RF~rRI~~~e~~i~~~L~---p~hR~ri~~ 305 (307)
T PF10488_consen 269 PWEQMARDRDRFQRRIAETEEAIGPCLT---PEHRERIWA 305 (307)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhCC---HHHHHHHHh
Confidence 6899999999999998876654444433 356777764
No 15
>PF00062 Lys: C-type lysozyme/alpha-lactalbumin family; InterPro: IPR001916 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 22 GH22 from CAZY comprises enzymes with two known activities; lysozyme type C (3.2.1.17 from EC) and alpha-lactalbumins. Asp and/or the carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base. Alpha-lactalbumin [, ] is a milk protein that acts as the regulatory subunit of lactose synthetase, acting to promote the conversion of galactosyltransferase to lactose synthase, which is essential for milk production. In the mammary gland, alpha-lactalbumin changes the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. Lysozymes (3.2.1.17 from EC) act as bacteriolytic enzymes by hydrolyzing the beta(1->4) bonds between N-acetylglucosamine and N-acetylmuramic acid in the peptidoglycan of prokaryotic cell walls. It has also been recruited for a digestive role in certain ruminants and colobine monkeys []. There are at least five different classes of lysozymes []: C (chicken type), G (goose type), phage-type (T4), fungi (Chalaropsis), and bacterial (Bacillus subtilis). There are few similarities in the sequences of the different types of lysozymes. Lysozyme type C and alpha-lactalbumin are similar both in terms of primary sequence and structure, and probably evolved from a common ancestral protein []. Around 35 to 40% of the residues are conserved in both proteins as well as the positions of the four disulphide bonds. There is, however, no similarity in function. Another significant difference between the two enzymes is that all lactalbumins have the ability to bind calcium [], while this property is restricted to only a few lysozymes []. The binding site was deduced using high resolution X-ray structure analysis and was shown to consist of three aspartic acid residues. It was first suggested that calcium bound to lactalbumin stabilised the structure, but recently it has been claimed that calcium controls the release of lactalbumin from the golgi membrane and that the pattern of ion binding may also affect the catalytic properties of the lactose synthetase complex.; PDB: 1HFX_A 1HMK_A 1HFY_B 1FKQ_A 1FKV_A 3B0K_B 1HML_A 1B9O_A 1A4V_A 3B0O_A ....
Probab=22.57 E-value=21 Score=26.81 Aligned_cols=7 Identities=71% Similarity=1.478 Sum_probs=3.4
Q ss_pred HHHhhhh
Q psy1009 88 FEKCELA 94 (129)
Q Consensus 88 fekce~a 94 (129)
|++||||
T Consensus 3 ~~rCeLa 9 (125)
T PF00062_consen 3 FTRCELA 9 (125)
T ss_dssp C-HHHHH
T ss_pred ccHhHHH
Confidence 5555555
No 16
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=22.52 E-value=35 Score=28.24 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.6
Q ss_pred ccccCCCCCCcccH
Q psy1009 11 EGTNQRGRPRKEYI 24 (129)
Q Consensus 11 ~GKRpRGRPRkRW~ 24 (129)
.+|.|||||||=|.
T Consensus 62 ie~~~Rg~~rKYY~ 75 (217)
T COG1777 62 IEKIPRGRPRKYYM 75 (217)
T ss_pred ccccccCCCcceee
Confidence 36889999999874
No 17
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=20.83 E-value=1.1e+02 Score=26.68 Aligned_cols=41 Identities=39% Similarity=0.416 Sum_probs=28.7
Q ss_pred cCCchHHHHHHHHHhhhhhcCCCCCCCCCCCcCCCcchHHHHHHHHhhhhc
Q psy1009 77 RHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQRSV 127 (129)
Q Consensus 77 ~hplfpll~llfekce~at~~~~~~~~~~~~~~~~~sf~~d~~~f~~~~~~ 127 (129)
.-|-.=|-.|||+ |||-+. --|-..-.|||-.+.||.+.++
T Consensus 159 ~~~~~~LA~LIfH--ELaHq~--------~Yv~~dt~FNEsfAtfVe~~G~ 199 (337)
T PF10023_consen 159 RYPDGELARLIFH--ELAHQT--------LYVKGDTAFNESFATFVEREGA 199 (337)
T ss_pred CCCchHHHHHHHH--HHhhce--------eecCCCchhhHHHHHHHHHHHH
Confidence 3455567779999 788764 1122334899999999998765
No 18
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.42 E-value=1.4e+02 Score=24.39 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=16.2
Q ss_pred hhhhhhhhhcCCchHHHHHHH
Q psy1009 68 SSVHCALCFRHPLFPLLALIF 88 (129)
Q Consensus 68 ~~~~~~~i~~hplfpll~llf 88 (129)
..+-|.++-.||++|.|--+|
T Consensus 26 aqa~K~~l~~hr~k~ALfsVL 46 (191)
T PF03792_consen 26 AQARKHALNCHRMKPALFSVL 46 (191)
T ss_pred HHHhchhhcCCCCchhhHHHH
Confidence 356678899999999988444
Done!