Query psy1009
Match_columns 129
No_of_seqs 134 out of 178
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:38:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ezd_A High mobility group pro 91.3 0.075 2.6E-06 29.6 1.2 12 10-21 2-13 (26)
2 2lo0_A Uncharacterized protein 74.0 2 6.7E-05 29.1 2.4 27 98-124 26-52 (75)
3 3eoj_A Bacteriochlorophyll A p 42.3 4.5 0.00015 33.9 -0.4 15 71-85 283-297 (366)
4 3c5t_B Exendin-4, exenatide; l 34.1 9.3 0.00032 21.8 0.2 19 2-20 11-29 (31)
5 3mfq_A TROA, high-affinity zin 29.3 63 0.0021 25.2 4.3 64 23-86 115-178 (282)
6 1jrj_A Exendin-4; Trp-CAGE, GL 27.9 18 0.00061 21.6 0.7 19 2-20 19-37 (39)
7 3hh8_A Metal ABC transporter s 25.1 43 0.0015 26.3 2.7 64 24-87 136-199 (294)
8 3ujp_A Mn transporter subunit; 23.6 46 0.0016 26.5 2.6 64 23-86 142-205 (307)
9 1xvl_A Mn transporter, MNTC pr 23.6 49 0.0017 26.4 2.8 63 24-86 157-219 (321)
10 1toa_A Tromp-1, protein (perip 23.5 47 0.0016 26.4 2.6 66 23-88 149-214 (313)
No 1
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=91.28 E-value=0.075 Score=29.58 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=9.9
Q ss_pred cccccCCCCCCc
Q psy1009 10 VEGTNQRGRPRK 21 (129)
Q Consensus 10 p~GKRpRGRPRk 21 (129)
|..|||||||+-
T Consensus 2 ptpKrpRgRpkG 13 (26)
T 2ezd_A 2 PTPKRPRGRPKG 13 (26)
T ss_dssp CSCCCCSSCCTT
T ss_pred CCCcCCCCCcCc
Confidence 467999999974
No 2
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=74.02 E-value=2 Score=29.15 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred CCCCCCCCCCcCCCcchHHHHHHHHhh
Q psy1009 98 PREPGVAGGDVCSSESFNEDIAVFSKQ 124 (129)
Q Consensus 98 ~~~~~~~~~~~~~~~sf~~d~~~f~~~ 124 (129)
|...+++|.+|-..+.|-+|+.-|++|
T Consensus 26 ~~a~g~sg~~vl~TeeFW~DL~gFL~q 52 (75)
T 2lo0_A 26 KPAVGPSGESVVATEAFWDDLQGFLEQ 52 (75)
T ss_dssp -----CCSSTTTTSHHHHHHHHHHHHH
T ss_pred cccccchHHHHHhHHHHHHHHHHHHHH
Confidence 444566899999999999999999986
No 3
>3eoj_A Bacteriochlorophyll A protein; excitation energy transfer, beta sheet, gamma-turns, chromophore, electron transport, magnesium; HET: BCL; 1.30A {Prosthecochloris aestuarii 2K} SCOP: b.75.1.1 PDB: 4bcl_A* 3oeg_A* 3vdi_A* 1m50_A* 3eni_A* 1ksa_A* 3bsd_A*
Probab=42.27 E-value=4.5 Score=33.92 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.4
Q ss_pred hhhhhhcCCchHHHH
Q psy1009 71 HCALCFRHPLFPLLA 85 (129)
Q Consensus 71 ~~~~i~~hplfpll~ 85 (129)
.+++|.+|||.||.-
T Consensus 283 g~rrilnhpliplvH 297 (366)
T 3eoj_A 283 GLRRILNHPLIPLVH 297 (366)
T ss_dssp TEEEECCCCHHHHHH
T ss_pred CchhhhcCCccceee
Confidence 357899999999973
No 4
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=34.08 E-value=9.3 Score=21.84 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=12.8
Q ss_pred hhhhhhcccccccCCCCCC
Q psy1009 2 LLTLIEGMVEGTNQRGRPR 20 (129)
Q Consensus 2 ~K~ilegkp~GKRpRGRPR 20 (129)
+|..+.|-.+||+++|-|+
T Consensus 11 akdFv~WL~ngk~~~~~p~ 29 (31)
T 3c5t_B 11 VRLFIEWLKNGGPSSGAPP 29 (31)
T ss_dssp HHHHHHHHHTTGGGC----
T ss_pred HHHHHHHHHhCCCCCCCCC
Confidence 4667899999999999775
No 5
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=29.35 E-value=63 Score=25.17 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=40.9
Q ss_pred cHHHHHHHhccCChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhcCCchHHHHH
Q psy1009 23 YIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLAL 86 (129)
Q Consensus 23 W~D~Vk~Dl~~~~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~hplfpll~l 86 (129)
+.+.|...|..+++++.....+|-+.+..-+.++...-.+.++......|..|..||-|.-|+-
T Consensus 115 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~ 178 (282)
T 3mfq_A 115 AVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAA 178 (282)
T ss_dssp HHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHH
Confidence 4456777777777777766777777777666665554444444333344556778999987763
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.86 E-value=18 Score=21.56 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.9
Q ss_pred hhhhhhcccccccCCCCCC
Q psy1009 2 LLTLIEGMVEGTNQRGRPR 20 (129)
Q Consensus 2 ~K~ilegkp~GKRpRGRPR 20 (129)
.|..++|-++||+++|-|.
T Consensus 19 ak~fv~wL~~~k~r~~~pp 37 (39)
T 1jrj_A 19 VRLFIEWLKNGGPSSGAPP 37 (39)
T ss_dssp HHHHHHHHHTTGGGSSSCC
T ss_pred HHHHHHHHHcCCCCCCCCC
Confidence 4677889999999999875
No 7
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=25.09 E-value=43 Score=26.32 Aligned_cols=64 Identities=8% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHHHHhccCChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhcCCchHHHHHH
Q psy1009 24 IRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALI 87 (129)
Q Consensus 24 ~D~Vk~Dl~~~~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~hplfpll~ll 87 (129)
.+.|...|..++.++......|-+.+..-+.++...-.+.++......|..|..||-|.-|+-=
T Consensus 136 a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~ 199 (294)
T 3hh8_A 136 SKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKA 199 (294)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHH
Confidence 4456666666667666666667777766666665544444444333446778899999888733
No 8
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=23.60 E-value=46 Score=26.53 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=38.7
Q ss_pred cHHHHHHHhccCChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhcCCchHHHHH
Q psy1009 23 YIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLAL 86 (129)
Q Consensus 23 W~D~Vk~Dl~~~~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~hplfpll~l 86 (129)
+.+.|...|..++.++......|-+.+..-+.++...-.+.++......|..|..||-|--|+-
T Consensus 142 ~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~ 205 (307)
T 3ujp_A 142 YVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLAR 205 (307)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHH
Confidence 3455666666666666555566666666655555543344444333445667778999988773
No 9
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=23.57 E-value=49 Score=26.44 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=39.5
Q ss_pred HHHHHHHhccCChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhcCCchHHHHH
Q psy1009 24 IRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLAL 86 (129)
Q Consensus 24 ~D~Vk~Dl~~~~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~hplfpll~l 86 (129)
.+.|...|..+++++......|-+.+..-+.++...-.+.++......|..|..||-|--|+-
T Consensus 157 a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~ 219 (321)
T 1xvl_A 157 VENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLAR 219 (321)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHH
Confidence 345556665566666666666666666655555544444444334456778889999988773
No 10
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=23.52 E-value=47 Score=26.42 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=42.0
Q ss_pred cHHHHHHHhccCChHHHHHHHHhhHHHHHHHHhhccchhhhhhhhhhhhhhhhhcCCchHHHHHHH
Q psy1009 23 YIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIF 88 (129)
Q Consensus 23 W~D~Vk~Dl~~~~~~~~kelA~DRe~WR~lv~a~~P~~~qi~~~~~~~~~~~i~~hplfpll~llf 88 (129)
+.+.|...|..+++++.....+|-+.+..-+.++...-.++++......|..|..||-|.-|+-=|
T Consensus 149 ~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~y 214 (313)
T 1toa_A 149 SVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAY 214 (313)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHH
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHC
Confidence 344566666656666666666666666666666555444454444445677899999998887433
Done!