RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1009
(129 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 5e-06
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 46/134 (34%)
Query: 15 QRGRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCAL 74
++G+ IR +NY + + + + +T+ +IF+ I+ +
Sbjct: 1679 EKGK----RIR--------ENYSAMIF--ETIVDGKLKTE-------KIFKEINEHSTSY 1717
Query: 75 CFRHP---LF------PLLAL----IFEKCELATCTPREPGVAG---GD----VCSSESF 114
FR L P L L FE + P + AG G+ ++
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 115 N-EDIA--VFSKQR 125
+ E + VF R
Sbjct: 1778 SIESLVEVVF--YR 1789
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein
binding; NMR {Aspergillus fumigatus}
Length = 75
Score = 27.5 bits (60), Expect = 0.57
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 89 EKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQR 125
E+ E G +G V ++E+F +D+ F +QR
Sbjct: 17 EQKESYEPPKPAVGPSGESVVATEAFWDDLQGFLEQR 53
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, hydrolase, protein-ligand complex; HET:
NLA; 1.50A {Homo sapiens} PDB: 5pnt_A* 1xww_A 1bvh_A
1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Length = 157
Score = 26.7 bits (60), Expect = 2.0
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 30 AMGYQNYMELKRLAQNRNEWRRRTKLLL 57
M N +L R + + + +LL
Sbjct: 90 CMDESNLRDLNRKSNQVKTCKAKIELLG 117
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 27.1 bits (59), Expect = 2.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 43 AQNRNEWRR-RTKLLLPTNRQIFQLISSVHCALC 75
++NR+ W R KL+ N + + + S LC
Sbjct: 288 SENRDVWAELRQKLIFDGNEETLKKVDSAVFCLC 321
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching,
transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Length = 540
Score = 26.8 bits (58), Expect = 2.6
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 5 LIEGMVEGTNQR-GRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQI 63
+ EG R R + +Y R TA+ ++ + ++R + L+ R+
Sbjct: 92 IKEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKA 151
Query: 64 FQLISSVHCALCFRHPLFPLL 84
+ H PLL
Sbjct: 152 EEGGQVELITSNATHGYSPLL 172
>2e1n_A PEX, period extender; circadian clock, DNA binding protein,
circadian clock protei; 1.80A {Synechococcus elongatus
pcc 7942}
Length = 138
Score = 25.5 bits (56), Expect = 4.1
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 5 LIEGMVEGTNQRGRPRKEY-IRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQI 63
+I G + RGRPR+ Y + R W R T+RQ+
Sbjct: 83 IISGYWKKVEGRGRPRRMYQL----AQAN------DDRSRDLAQLWERYLSSSAATDRQL 132
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein;
2.90A {Synechococcus SP}
Length = 148
Score = 25.6 bits (56), Expect = 4.4
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 5 LIEGMVEGTNQRGRPRKEY-IRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQI 63
+I G + RGRPR+ Y + R W R T+RQ+
Sbjct: 93 IISGYWKKVEGRGRPRRMYQL----AQAN------DDRSRDLAQLWERYLSSSAATDRQL 142
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast
collaboratory for structural genomics, secsg; 2.00A
{Pyrococcus furiosus} SCOP: a.149.1.2
Length = 133
Score = 25.5 bits (55), Expect = 4.8
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 21/67 (31%)
Query: 84 LALIFEKCELATCTPREPGVAGGDVCS---------------------SESFNEDIAVFS 122
LA+ E L+ R A GD ++ ++ FS
Sbjct: 48 LAIALELTGLSKNLRRVDKHAKGDYAEALIAKAWLMGLISEREAVEIIKKNLYPEVLDFS 107
Query: 123 KQRSVVG 129
K++ +G
Sbjct: 108 KKKEAIG 114
>2dql_A PEX protein; circadian clock associated protein, circadian clock
protein; 1.70A {Anabaena SP}
Length = 115
Score = 24.7 bits (54), Expect = 6.3
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 11/48 (22%)
Query: 5 LIEGMVEGTNQRGRPRKEY-IRDVETAMGYQNYMELKRLAQNRNEWRR 51
I G + RGRPR+ Y + + + W+
Sbjct: 71 AITGYWKKLEGRGRPRRMYQV----SPEW------QHQAEDLARLWQN 108
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 24.4 bits (53), Expect = 9.5
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 24 IRDVETAMGYQNYMELKRLAQNRN 47
I+DV + Y + + + + +
Sbjct: 119 IKDVYDKVDYLSSLGKTQTSGPSS 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.418
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,913,421
Number of extensions: 98668
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 15
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)