RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1009
         (129 letters)



>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 382

 Score = 24.6 bits (53), Expect = 4.4
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 43  AQNRNEWR--RRTKLLLPTNRQIFQLISSVHCALCFRHP 79
           +  R+EW   R   L   TNR    +I    C +C   P
Sbjct: 228 SDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDGP 266


>d1rl0a_ d.165.1.1 (A:) Dianthin 30 {Clove pink (Dianthus
           caryophyllus) [TaxId: 3570]}
          Length = 255

 Score = 23.8 bits (51), Expect = 8.9
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 35  NYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVH 71
           +Y  +++ A+     + R +L L     I  LI+ + 
Sbjct: 120 DYQAIEKNAKITTGDQSRKELGL----GINLLITMID 152


>d1yrxa1 d.58.10.2 (A:17-130) Sensor of blue light AppA
          {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 114

 Score = 22.9 bits (49), Expect = 10.0
 Identities = 8/56 (14%), Positives = 19/56 (33%)

Query: 23 YIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRH 78
          Y       +  ++ +++   +Q  N   + T  L  +    FQ +     A+    
Sbjct: 5  YRSLAAPDLTLRDLLDIVETSQAHNARAQLTGALFYSQGVFFQWLEGRPAAVAEVM 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,398
Number of extensions: 19495
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 8
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.6 bits)