BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10090
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JP4|A Chain A, Crystal Structure Of An Enzyme Displaying Both Inositol-
Polyphosphate 1-Phosphatase And 3'-Phosphoadenosine-5'-
Phosphate Phosphatase Activities
Length = 308
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 220 TLAEKD--IVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDV 277
+AE D IV S D T+ADR + I SSL+ FP +TIIGEE G +V
Sbjct: 29 VIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPG------EV 82
Query: 278 PPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAH 337
E I E IL + CP + E+D+VVWVDP+DGT+EYT+G LD+VTVLIGI+
Sbjct: 83 DQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYE 142
Query: 338 GKALAGVIHQPFYNYQNKESGAQLGRTIWGIQDLGVGGYTPNPPPANKRIITTTRYES 395
GKA+AG+I+QP+YNYQ A LGRTIWG+ LG G+ PA K IITTTR S
Sbjct: 143 GKAIAGIINQPYYNYQAGPD-AVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHS 199
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 150 SKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEAI 209
S D T+ADR + I SSL+ FP +TIIGEE G +V E I E I
Sbjct: 42 SATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPG------EVDQELIEDGQSEEI 95
Query: 210 LAKTCPPSLQTLAEKDIV 227
L + CP + E+D+V
Sbjct: 96 LKQPCPSQYSAIKEEDLV 113
>pdb|2WEF|A Chain A, Human 3'(2'), 5'-Bisphosphate Nucleotidase 1 (Bpnt1) In
Complex With Amp, Po4 And Magnesium
Length = 311
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 112/181 (61%), Gaps = 13/181 (7%)
Query: 219 QTLAEKD--IVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCD 276
+ +AE D IV D T+ADR A+ I SSLA FP +TIIGEE S +
Sbjct: 24 RVIAEGDLGIVEKTCATDLQTKADRLAQMSICSSLARKFPKLTIIGEEDLPSEEVDQELI 83
Query: 277 VPPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISA 336
+W E IL + CP + E+D+VVWVDPLDGT+EYT+G LD+VTVLIGI+
Sbjct: 84 EDSQW------EEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAY 137
Query: 337 HGKALAGVIHQPFYNYQNKESG--AQLGRTIWGIQDLGVGGYTPNPPPANKRIITTTRYE 394
GKA+AGVI+QP+YNY E+G A LGRTIWG+ LG G+ PA K IITTTR
Sbjct: 138 EGKAIAGVINQPYYNY---EAGPDAVLGRTIWGVLGLGAFGFQLKEVPAGKHIITTTRSH 194
Query: 395 S 395
S
Sbjct: 195 S 195
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 153 DFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEAILAK 212
D T+ADR A+ I SSLA FP +TIIGEE S + +W E IL +
Sbjct: 41 DLQTKADRLAQMSICSSLARKFPKLTIIGEEDLPSEEVDQELIEDSQW------EEILKQ 94
Query: 213 TCPPSLQTLAEKDIV 227
CP + E+D+V
Sbjct: 95 PCPSQYSAIKEEDLV 109
>pdb|2QFL|A Chain A, Structure Of Suhb: Inositol Monophosphatase And Extragenic
Suppressor From E. Coli
Length = 267
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 36/135 (26%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
K NDF T D++AE II ++ +P TII EE E T D +W+I
Sbjct: 34 KGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEESGELEGT----DQDVQWVI------ 83
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPF 349
DPLDGT + + L H V I + G+ V++ P
Sbjct: 84 ----------------------DPLDGTTNFIK-RLPHFAVSIAVRIKGRTEVAVVYDPM 120
Query: 350 YN---YQNKESGAQL 361
N + GAQL
Sbjct: 121 RNELFTATRGQGAQL 135
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 149 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVD 206
K NDF T D++AE II ++ +P TII EE E T D +W+I +D
Sbjct: 34 KGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEESGELEGT----DQDVQWVIDPLD 87
>pdb|1INP|A Chain A, Crystal Structure Of Inositol Polyphosphate 1-phosphatase
At 2.3 Angstroms Resolution
Length = 400
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 71/208 (34%)
Query: 234 DFSTEADRSAETCIISSLASLFPSI--TIIGEEGRESGHTHKMCDVPPEWIISDVDEAIL 291
DF T AD + I ++ + FP + I GEE E + +D+ E I+
Sbjct: 48 DFKTLADVLVQEVIKENMENKFPGLGKKIFGEESNE--------------LTNDLGEKII 93
Query: 292 AKTCPPSLQTLA--------------------------------------EKDIV-VWVD 312
+ P +T+A +DI+ +WVD
Sbjct: 94 MRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVD 153
Query: 313 PLDGTREYTQGFLD-------------HVTVLIGIS--AHGKALAGVIHQPFYNYQNKES 357
P+D T +Y +G D VTVLIG+ G L GVI+QPF + Q+ +
Sbjct: 154 PIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVS-QDLHT 212
Query: 358 GAQLGRTIWGIQDLGVGGYTPNPPPANK 385
G+ WG+ LG ++ PP + +
Sbjct: 213 RRWKGQCYWGLSYLGTNIHSLLPPVSTR 240
>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
Length = 277
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
E +I+ S D T D+ E +I+S+ +PS + IGEE +G + D P WI
Sbjct: 30 EMNIMVKSSPADLVTATDQKVEKMLITSIKEKYPSHSFIGEESVAAGEKSILTD-NPTWI 88
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
I DP+DGT + GF V V IG + K
Sbjct: 89 I----------------------------DPIDGTTNFVHGF-PFVAVSIGFVVNKKMEF 119
Query: 343 GVIH 346
G+++
Sbjct: 120 GIVY 123
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 133 ETRKYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHK 192
E + A + I S D T D+ E +I+S+ +PS + IGEE +G
Sbjct: 21 EVVREALKNEMNIMVKSSPADLVTATDQKVEKMLITSIKEKYPSHSFIGEESVAAGEKSI 80
Query: 193 MCDVPPEWIISDVD 206
+ D P WII +D
Sbjct: 81 LTD-NPTWIIDPID 93
>pdb|1IMA|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMA|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMC|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMC|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMD|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IMD|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IME|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IME|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMF|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|4AS4|A Chain A, Structure Of Human Inositol Monophosphatase 1
pdb|4AS4|B Chain B, Structure Of Human Inositol Monophosphatase 1
Length = 277
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
E +++ S D T D+ E +ISS+ +PS + IGEE +G + D P WI
Sbjct: 30 EMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTD-NPTWI 88
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
I DP+DGT + F V V IG + + K
Sbjct: 89 I----------------------------DPIDGTTNFVHRF-PFVAVSIGFAVNKKIEF 119
Query: 343 GVIH 346
GV++
Sbjct: 120 GVVY 123
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 153 DFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVD 206
D T D+ E +ISS+ +PS + IGEE +G + D P WII +D
Sbjct: 41 DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTD-NPTWIIDPID 93
>pdb|2HHM|A Chain A, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|2HHM|B Chain B, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|1AWB|A Chain A, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
pdb|1AWB|B Chain B, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
Length = 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
E +++ S D T D+ E +ISS+ +PS + IGEE +G + D P WI
Sbjct: 29 EMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTD-NPTWI 87
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
I DP+DGT + F V V IG + + K
Sbjct: 88 I----------------------------DPIDGTTNFVHRF-PFVAVSIGFAVNKKIEF 118
Query: 343 GVIH 346
GV++
Sbjct: 119 GVVY 122
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 153 DFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVD 206
D T D+ E +ISS+ +PS + IGEE +G + D P WII +D
Sbjct: 40 DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTD-NPTWIIDPID 92
>pdb|2P3N|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3N|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3N|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3N|D Chain D, Thermotoga Maritima Impase Tm1415
pdb|2P3V|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3V|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3V|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3V|D Chain D, Thermotoga Maritima Impase Tm1415
Length = 256
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 41/130 (31%)
Query: 234 DFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEAILAK 293
D TE DR A+ I+ + FP I+ EEG
Sbjct: 36 DIVTEIDREAQRMIVDEIRKFFPDENIMAEEG---------------------------- 67
Query: 294 TCPPSLQTLAEKDIVVWV-DPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPFYN- 351
+ EK +W+ DP+DGT + G L + ++ + +G+ GV+H P N
Sbjct: 68 --------IFEKGDRLWIIDPIDGTINFVHG-LPNFSISLAYVENGEVKLGVVHAPALNE 118
Query: 352 --YQNKESGA 359
Y + SGA
Sbjct: 119 TLYAEEGSGA 128
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 141 RYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEG 184
R ++ D TE DR A+ I+ + FP I+ EEG
Sbjct: 24 RVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEG 67
>pdb|2FVZ|A Chain A, Human Inositol Monophosphosphatase 2
pdb|2FVZ|B Chain B, Human Inositol Monophosphosphatase 2
pdb|2FVZ|C Chain C, Human Inositol Monophosphosphatase 2
pdb|2FVZ|D Chain D, Human Inositol Monophosphosphatase 2
Length = 273
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 143 KRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
KR+ S D TE D E IIS L FPS I EE SG + P WII
Sbjct: 27 KRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTH-SPTWII 85
Query: 203 SDVD 206
+D
Sbjct: 86 DPID 89
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
EK + S D TE D E IIS L FPS I EE SG + P WI
Sbjct: 26 EKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTH-SPTWI 84
Query: 283 ISDVD 287
I +D
Sbjct: 85 IDPID 89
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 143 KRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
KR+ S D TE D E IIS L FPS I EE SG + P WII
Sbjct: 53 KRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTH-SPTWII 111
Query: 203 SDVD 206
+D
Sbjct: 112 DPID 115
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
EK + S D TE D E IIS L FPS I EE SG + P WI
Sbjct: 52 EKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTH-SPTWI 110
Query: 283 ISDVD 287
I +D
Sbjct: 111 IDPID 115
>pdb|3LUZ|A Chain A, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Via Combined Iodide Sad
Molecular Replacement
pdb|3LUZ|B Chain B, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Via Combined Iodide Sad
Molecular Replacement
pdb|3LV0|A Chain A, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Native
pdb|3LV0|B Chain B, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Native
Length = 267
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 33/119 (27%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
K D+ ++ADR AE I + L+ P + EE E I D
Sbjct: 40 KGPADYVSQADRKAEKIIFNELSKARPKFGFLMEE-------------SEEIIGEDSQHR 86
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQP 348
+ VDPLDGT + G + V I + + GK +AGVI+ P
Sbjct: 87 FI-------------------VDPLDGTTNFLHG-IPFFAVSIALESQGKIVAGVIYNP 125
>pdb|3T0J|A Chain A, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|B Chain B, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|C Chain C, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|D Chain D, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
Length = 283
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 32/114 (28%)
Query: 233 NDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEAILA 292
ND T D++ E I ++ +P+ ++GEE GH H D+D +
Sbjct: 43 NDLVTNVDKATEDFIFDTILETYPNHQVLGEE----GHGH------------DIDTS--- 83
Query: 293 KTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIH 346
K V VDP+DGT + ++ + IGI GK AG ++
Sbjct: 84 ------------KGTVWVVDPIDGTLNFVHQ-QENFAISIGIYIDGKPYAGFVY 124
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 145 IQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKM-CDVPPEWIIS 203
I+ + ND T D++ E I ++ +P+ ++GEE GH H + W++
Sbjct: 36 IETKSNPNDLVTNVDKATEDFIFDTILETYPNHQVLGEE----GHGHDIDTSKGTVWVVD 91
Query: 204 DVD 206
+D
Sbjct: 92 PID 94
>pdb|3QBU|A Chain A, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
pdb|3QBU|B Chain B, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
pdb|3QBU|C Chain C, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
pdb|3QBU|D Chain D, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
Length = 326
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 196 VPPEWIISDVDEAILAKTCPPSLQTLAEKDI------VGDK-SKNDFSTEADRSAETCII 248
V P W S++ +L K +L D VGD SK D+S EA + I
Sbjct: 157 VAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKPLI- 215
Query: 249 SSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKDI- 307
G E+ + ++P W + D+ + K P S ++ +DI
Sbjct: 216 ---------------RGVET----NLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPRDIG 256
Query: 308 VVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPFYNYQNKESGAQ 360
+W+D D + +T+ +SA + L ++H+ + NK G +
Sbjct: 257 QMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVL--LMHEKIIEHINKHEGVR 307
>pdb|2PCR|A Chain A, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|B Chain B, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|C Chain C, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|D Chain D, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
Length = 264
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 310 WVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPFYNYQNKESGAQLGRTIWGIQ 369
++DPLDGT+ Y GF V +G+ + + G ++ P+++ + WG +
Sbjct: 84 FIDPLDGTKNYINGF-PIFAVSVGLVKGEEPIVGAVYLPYFD-----------KLYWGAK 131
Query: 370 DLG 372
LG
Sbjct: 132 GLG 134
>pdb|3B8B|A Chain A, Crystal Structure Of Cysq From Bacteroides
Thetaiotaomicron, A Bacterial Member Of The Inositol
Monophosphatase Family
Length = 292
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 311 VDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPFYN---YQNKESGAQLGRTIWG 367
VDPLDGT+E+ + TV I + + + GVI+ P + + +GA I G
Sbjct: 104 VDPLDGTKEFIKRN-GEFTVNIALVQNAVPVXGVIYVPVKKELYFAVEGTGAYKXSGIVG 162
Query: 368 IQDLGV 373
++D GV
Sbjct: 163 LEDEGV 168
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 150 SKNDFS--TEADRSAETCIISSLASLFPSITIIGEE 183
+KND S T D +A+T II+++ S FP ++GEE
Sbjct: 38 TKNDNSPVTTGDYAAQTIIINAIKSNFPDDKVVGEE 73
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 231 SKNDFS--TEADRSAETCIISSLASLFPSITIIGEE 264
+KND S T D +A+T II+++ S FP ++GEE
Sbjct: 38 TKNDNSPVTTGDYAAQTIIINAIKSNFPDDKVVGEE 73
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 133 ETRKYARRRYKRIQGDKSKND----FSTEADRSAETCIISSLASLFP 175
E Y RRRY R + K+D ST+ DR+ + +++LA+LFP
Sbjct: 48 ELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSA-MTNLAALFP 93
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 276
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 110 WTKYLETYVKGILVYQLQDKLDPETRKYARRRYKRIQGDKSKNDFSTEADRSAETCIISS 169
+TK L+ + L+ +L K PETRK R R ++ +K KN T + + A C++S
Sbjct: 91 FTKVLDRSSRNELL-KLVKKYAPETRKARRDRLTKVAEEKKKNPKGTVSTK-APLCVVSG 148
Query: 170 LASLFPSI 177
L + +I
Sbjct: 149 LQEVTRTI 156
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 36 YHYLFAYIVDFCAPLTKSKLR-LVPIYQRIDKVMDVLEPFSTNEWSFIN----ENIHTLW 90
Y++LF L K++LR +P ++ +V+D+ F+ E I ++
Sbjct: 13 YYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDI----GCGRGEFLELCKEEGIESIG 68
Query: 91 DSLSPQEQAKF---PFNIRDLDWTKYLET----YVKGILVYQLQDKLDPE 133
++ ++ KF FN+ D +YL++ Y+ G+++ + LDPE
Sbjct: 69 VDIN-EDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 249 SSLASLFPSITI---IGEEGRESGHTHKMCDVPPEWIISDVDEAILAKTCPPSLQ-TLAE 304
+ L ++FP + + + G + G ++C +P W+ DE +L + T AE
Sbjct: 304 NHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAE 363
Query: 305 KDIVVWVDPLDGTRE-YTQGFLDHVT 329
++++ P+ G + + G L HV
Sbjct: 364 REMLRNKVPVTGLKTPFRDGLLKHVA 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,649,772
Number of Sequences: 62578
Number of extensions: 534125
Number of successful extensions: 1154
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 41
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)