RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10090
(395 letters)
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 159 bits (405), Expect = 3e-46
Identities = 83/163 (50%), Positives = 103/163 (63%), Gaps = 7/163 (4%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
S D T+ADR + I SSL+ FP +TIIGEE G +V E I E
Sbjct: 41 TSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPG------EVDQELIEDGQSEE 94
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPF 349
IL + CP + E+D+VVWVDP+DGT+EYT+G LD+VTVLIGI+ GKA+AG+I+QP+
Sbjct: 95 ILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPY 154
Query: 350 YNYQNKESGAQLGRTIWGIQDLGVGGYTPNPPPANKRIITTTR 392
YNYQ A LGRTIWG+ LG G+ PA K IITTTR
Sbjct: 155 YNYQAG-PDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTR 196
Score = 65.6 bits (160), Expect = 4e-12
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 135 RKYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMC 194
R I S D T+ADR + I SSL+ FP +TIIGEE G
Sbjct: 27 RCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPG------ 80
Query: 195 DVPPEWIISDVDEAILAKTCPPSLQTLAEKDIV 227
+V E I E IL + CP + E+D+V
Sbjct: 81 EVDQELIEDGQSEEILKQPCPSQYSAIKEEDLV 113
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 115 bits (290), Expect = 4e-29
Identities = 56/257 (21%), Positives = 91/257 (35%), Gaps = 76/257 (29%)
Query: 147 GDKSKNDFSTEADRSAETCIISSLASLFPSI--TIIGEEGRESGHTHKMCDVPPEWIISD 204
K DF T AD + I ++ + FP + I GEE E + +D
Sbjct: 42 NKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKIFGEESNE--------------LTND 87
Query: 205 VDEAILAKTCPPSLQTLAEKDIVGDKSKNDFSTEADRSAETCIISSLAS-LFPSITIIGE 263
+ E I+ + P E++ V SK ++ A + + +F S +
Sbjct: 88 LGEKIIMRLGPT------EEETVALLSK---VLNGNKLASEALAKVVHQDVFFSDPALDS 138
Query: 264 EGRESGHTHKMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQG 323
++P + + +WVDP+D T +Y +G
Sbjct: 139 VE---------INIPQDIL-------------------------GIWVDPIDSTYQYIKG 164
Query: 324 -------------FLDHVTVLIGISA--HGKALAGVIHQPFYNYQNKESGAQLGRTIWGI 368
L VTVLIG+ G L GVI+QPF + G+ WG+
Sbjct: 165 SADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTR-RWKGQCYWGL 223
Query: 369 QDLGVGGYTPNPPPANK 385
LG ++ PP + +
Sbjct: 224 SYLGTNIHSLLPPVSTR 240
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis}
Length = 299
Score = 83.1 bits (206), Expect = 4e-18
Identities = 30/142 (21%), Positives = 40/142 (28%), Gaps = 32/142 (22%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
+ + S D T D E + LA L P I+GEEG W+
Sbjct: 43 DGAVRAKSSPTDPVTVVDTDTERLLRDRLAQLRPGDPILGEEGGGPADVTATPSDRVTWV 102
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
+ DP+DGT + G V IG G +A
Sbjct: 103 L----------------------------DPIDGTVNFVYGI-PAYAVSIGAQVGGITVA 133
Query: 343 GVIHQPFYN---YQNKESGAQL 361
G + GA L
Sbjct: 134 GAVADVAARTVYSAATGLGAHL 155
Score = 62.7 bits (153), Expect = 3e-11
Identities = 15/54 (27%), Positives = 19/54 (35%)
Query: 149 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
S D T D E + LA L P I+GEEG W++
Sbjct: 50 SSPTDPVTVVDTDTERLLRDRLAQLRPGDPILGEEGGGPADVTATPSDRVTWVL 103
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 77.3 bits (191), Expect = 3e-16
Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 36/152 (23%)
Query: 218 LQTLAEKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDV 277
Q + E + + D T D+ + LA+ FP ++ E E + ++
Sbjct: 33 PQLIMEMTTETKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAE---EKSNAMITNEI 89
Query: 278 PPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAH 337
WI+ DP+DGT + + +++
Sbjct: 90 NHLWIM----------------------------DPIDGTANLVKQQ-EDYCIILAYFYE 120
Query: 338 GKALAGVIHQPFYN---YQNKESGAQL-GRTI 365
GK + ++ + + GA G +
Sbjct: 121 GKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKM 152
Score = 56.1 bits (136), Expect = 4e-09
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 104 NIRDLDWTKYLETYVKGILVYQLQDKLDPETRKYARRRYKRIQGD--KSKNDFSTEADRS 161
++ D + + + + + + + + + D T D+
Sbjct: 8 HMTDKTLQQIDKLICSWLK----------QIDNVIPQLIMEMTTETKRHRFDLVTNVDKQ 57
Query: 162 AETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
+ LA+ FP ++ E E + ++ WI+
Sbjct: 58 IQQQFQQFLATYFPEHQLLAE---EKSNAMITNEINHLWIM 95
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 76.9 bits (190), Expect = 4e-16
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 34/140 (24%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
S D T D+ E +I+S+ +PS + IGEE +G + P WII
Sbjct: 37 SSPADLVTATDQKVEKMLITSIKEKYPSHSFIGEESVAAGEKSIL-TDNPTWII------ 89
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPF 349
DP+DGT + GF V V IG + K G+++
Sbjct: 90 ----------------------DPIDGTTNFVHGF-PFVAVSIGFVVNKKMEFGIVYSCL 126
Query: 350 YN---YQNKESGAQL-GRTI 365
+ K GA G+ +
Sbjct: 127 EDKMYTGRKGKGAFCNGQKL 146
Score = 60.3 bits (147), Expect = 1e-10
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 138 ARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVP 197
A + I S D T D+ E +I+S+ +PS + IGEE +G +
Sbjct: 26 ALKNEMNIMVKSSPADLVTATDQKVEKMLITSIKEKYPSHSFIGEESVAAGEKSIL-TDN 84
Query: 198 PEWII 202
P WII
Sbjct: 85 PTWII 89
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 76.0 bits (188), Expect = 6e-16
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 38/147 (25%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
+K+ + +K + DF + D+++E I + FP ++GEE G W
Sbjct: 30 KKENIEEKGEKDFVSYVDKTSEERIKEVILKFFPDHEVVGEEMGAEGS-----GSEYRWF 84
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
I DPLDGT+ Y GF V +G+ + +
Sbjct: 85 I----------------------------DPLDGTKNYINGF-PIFAVSVGLVKGEEPIV 115
Query: 343 GVIHQPFYN---YQNKESGAQL-GRTI 365
G ++ P+++ + K GA + G+ I
Sbjct: 116 GAVYLPYFDKLYWGAKGLGAYVNGKRI 142
Score = 55.6 bits (135), Expect = 5e-09
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 149 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
K + DF + D+++E I + FP ++GEE G W I
Sbjct: 37 KGEKDFVSYVDKTSEERIKEVILKFFPDHEVVGEEMGAEGS-----GSEYRWFI 85
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 76.1 bits (188), Expect = 8e-16
Identities = 38/140 (27%), Positives = 47/140 (33%), Gaps = 34/140 (24%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
S D TE D E IIS L FPS I EE SG + P WII
Sbjct: 33 TSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTH-SPTWII------ 85
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPF 349
DP+DGT + F V V IG + + GVI+
Sbjct: 86 ----------------------DPIDGTCNFVHRF-PTVAVSIGFAVRQELEFGVIYHCT 122
Query: 350 YN---YQNKESGAQL-GRTI 365
+ GA G+ +
Sbjct: 123 EERLYTGRRGRGAFCNGQRL 142
Score = 61.0 bits (149), Expect = 9e-11
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 138 ARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVP 197
A KR+ S D TE D E IIS L FPS I EE SG +
Sbjct: 22 ALTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTH-S 80
Query: 198 PEWII 202
P WII
Sbjct: 81 PTWII 85
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 75.3 bits (186), Expect = 1e-15
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 36/142 (25%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
+ K NDF T D++AE II ++ +P TII EE E T D +W+
Sbjct: 27 DAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEESGELEGT----DQDVQWV 82
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
I DPLDGT + + H V I + G+
Sbjct: 83 I----------------------------DPLDGTTNFIKRL-PHFAVSIAVRIKGRTEV 113
Query: 343 GVIHQPFYN---YQNKESGAQL 361
V++ P N + GAQL
Sbjct: 114 AVVYDPMRNELFTATRGQGAQL 135
Score = 54.9 bits (133), Expect = 1e-08
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 139 RRRYKRIQG----DKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMC 194
+ Y+ K NDF T D++AE II ++ +P TII EE E T
Sbjct: 20 AKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEESGELEGT---- 75
Query: 195 DVPPEWII 202
D +W+I
Sbjct: 76 DQDVQWVI 83
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus
horikoshii} SCOP: e.7.1.1
Length = 254
Score = 73.0 bits (180), Expect = 6e-15
Identities = 26/154 (16%), Positives = 43/154 (27%), Gaps = 40/154 (25%)
Query: 216 PSLQTLAEKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMC 275
P + + D + D+ AE IIS L + ++ E E G +
Sbjct: 23 PLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGVN--VVSE---EIGRIDQ-- 75
Query: 276 DVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGIS 335
++ DPLDG+ + G V + I
Sbjct: 76 GSDYTVVV----------------------------DPLDGSYNFINGI-PFFAVSVAIF 106
Query: 336 AHGKALAGVIHQPFYN---YQNKESGAQL-GRTI 365
+ I++P G+ L G I
Sbjct: 107 HEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKI 140
Score = 50.7 bits (122), Expect = 2e-07
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 149 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
D + D+ AE IIS L + ++ E E G + ++
Sbjct: 37 SPSGDETKVVDKVAENIIISKFKDLGVN--VVSE---EIGRIDQ--GSDYTVVV 83
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 72.2 bits (178), Expect = 1e-14
Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 39/135 (28%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
D TE DR A+ I+ + FP I+ EEG WII
Sbjct: 32 TGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFEKGDRL-------WII------ 78
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPF 349
DP+DGT + G + ++ + +G+ GV+H P
Sbjct: 79 ----------------------DPIDGTINFVHGL-PNFSISLAYVENGEVKLGVVHAPA 115
Query: 350 YN---YQNKESGAQL 361
N Y + SGA
Sbjct: 116 LNETLYAEEGSGAFF 130
Score = 53.7 bits (130), Expect = 2e-08
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 140 RRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPE 199
R ++ D TE DR A+ I+ + FP I+ EEG
Sbjct: 23 GRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFEKGDRL------- 75
Query: 200 WII 202
WII
Sbjct: 76 WII 78
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 72.3 bits (178), Expect = 2e-14
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 36/140 (25%)
Query: 230 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 289
+ ND T D++ E I ++ +P+ ++GEEG W++
Sbjct: 40 SNPNDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDIDT---SKGTVWVV------ 90
Query: 290 ILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVIHQPF 349
DP+DGT + ++ + IGI GK AG ++
Sbjct: 91 ----------------------DPIDGTLNFVHQQ-ENFAISIGIYIDGKPYAGFVYDVM 127
Query: 350 YN---YQNKESGAQL-GRTI 365
+ + GA + +
Sbjct: 128 ADVLYHAKVGEGAYRGSQPL 147
Score = 54.5 bits (132), Expect = 2e-08
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 136 KYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCD 195
K + I+ + ND T D++ E I ++ +P+ ++GEEG
Sbjct: 27 KQLMEQNLTIETKSNPNDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDIDT---S 83
Query: 196 VPPEWII 202
W++
Sbjct: 84 KGTVWVV 90
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 71.8 bits (177), Expect = 2e-14
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 36/142 (25%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
+ V K D+ ++ADR AE I + L+ P + EE E D +I
Sbjct: 33 QNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGE----DSQHRFI 88
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
+ DPLDGT + G V I + + GK +A
Sbjct: 89 V----------------------------DPLDGTTNFLHGI-PFFAVSIALESQGKIVA 119
Query: 343 GVIHQPFYN---YQNKESGAQL 361
GVI+ P + + SGA
Sbjct: 120 GVIYNPINDELFTAERGSGAFF 141
Score = 53.7 bits (130), Expect = 2e-08
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 149 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWII 202
K D+ ++ADR AE I + L+ P + EE E D +I+
Sbjct: 40 KGPADYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGE----DSQHRFIV 89
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory
for structural genomics hyperthermophIle, PSI; 2.80A
{Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 68.4 bits (168), Expect = 3e-13
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 40/144 (27%)
Query: 226 IVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISD 285
+V D + D+ AE I+S + L + ++ E E G + I+
Sbjct: 41 LVKISPSGDETKLVDKLAEDLILSRITELGVN--VVSE---EVGVIDN--ESEYTVIV-- 91
Query: 286 VDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVI 345
DPLDG+ + G + + + K + +I
Sbjct: 92 --------------------------DPLDGSYNFIAGI-PFFALSLAVFKKDKPIYAII 124
Query: 346 HQPFYN---YQNKESGAQL-GRTI 365
++P GA L G+ I
Sbjct: 125 YEPMTERFFEGIPGEGAFLNGKRI 148
Score = 49.2 bits (118), Expect = 7e-07
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 135 RKYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMC 194
+ ++ D + D+ AE I+S + L + ++ E E G
Sbjct: 31 PFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRITELGVN--VVSE---EVGVIDN-- 83
Query: 195 DVPPEWII 202
+ I+
Sbjct: 84 ESEYTVIV 91
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Length = 357
Score = 67.7 bits (165), Expect = 1e-12
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 30/171 (17%)
Query: 230 KSKNDFS--TEADRSAETCIISSLASLFPSITIIGEEG-----RESGHTHKMCDVPPEWI 282
+KND S T D +A+T II+++ S FP ++GEE + +
Sbjct: 37 ITKNDNSPVTTGDYAAQTIIINAIKSNFPDDKVVGEESSSGLSDAFVSGILNEIKANDEV 96
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVW----------------VDPLDGTREYTQGFLD 326
+ + + +D+ +DP+DGT+ + +G +
Sbjct: 97 YNKNYKKDDFLFTNDQFPLKSLEDVRQIIDFGNYEGGRKGRFWCLDPIDGTKGFLRG--E 154
Query: 327 HVTVLIGISAHGKALAGVIHQP-----FYNYQNKESGAQLGRTIWGIQDLG 372
V + + G G I P Y Q+ + G ++ LG
Sbjct: 155 QFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKGHESFGYIFRAVRGLG 205
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 63.9 bits (156), Expect = 8e-12
Identities = 30/149 (20%), Positives = 42/149 (28%), Gaps = 43/149 (28%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
VG + ADR AE + L + ++ EE G +
Sbjct: 29 RVKDVGMGKDGTPTKAADRVAEDAALEILRKERVT--VVTEESGVLG------EGDVFVA 80
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGK--- 339
+ DPLDGT T+G +V + S K
Sbjct: 81 L----------------------------DPLDGTFNATRGI-PVYSVSLCFSYSDKLKD 111
Query: 340 ALAGVIHQPFYN--YQNKESGAQL-GRTI 365
A G ++ Y SGA G I
Sbjct: 112 AFFGYVYNLATGDEYYADSSGAYRNGERI 140
Score = 45.8 bits (109), Expect = 8e-06
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 16/75 (21%)
Query: 136 KYARRRYKRIQGD--------KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRES 187
R+ + + ADR AE + L + ++ EE
Sbjct: 15 GEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAEDAALEILRKERVT--VVTEESGVL 72
Query: 188 GHTHKMCDVPPEWII 202
G + +
Sbjct: 73 G------EGDVFVAL 81
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
hydrolase; HET: IPD; 2.30A {Methanocaldococcus
jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Length = 252
Score = 62.2 bits (152), Expect = 3e-11
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 40/144 (27%)
Query: 226 IVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISD 285
+VG D + D+ +E + L S ++ I+ E E G +I
Sbjct: 30 VVGTSPSGDETEIFDKISEDIALKYLKS--LNVNIVSE---ELGVIDN--SSEWTVVI-- 80
Query: 286 VDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVI 345
DP+DG+ + G G+ + + G+
Sbjct: 81 --------------------------DPIDGSFNFINGI-PFFAFCFGVFKNNEPYYGLT 113
Query: 346 HQPFYN---YQNKESGAQL-GRTI 365
++ K GA L GR I
Sbjct: 114 YEFLTKSFYEAYKGKGAYLNGRKI 137
Score = 44.9 bits (107), Expect = 2e-05
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 135 RKYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMC 194
+ R+ + G D + D+ +E + L S ++ I+ E E G
Sbjct: 20 PYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYLKS--LNVNIVSE---ELGVIDN-- 72
Query: 195 DVPPEWII 202
+I
Sbjct: 73 SSEWTVVI 80
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 58.8 bits (143), Expect = 5e-10
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 47/139 (33%)
Query: 230 KSKNDFS--TEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVD 287
+ K D S T ADR A I++ L ++ EEG+ + + W
Sbjct: 52 ERKADNSPLTIADRKAHEAIVAILNE--TPFPVLSEEGKHMDYAVR-----RGW------ 98
Query: 288 EAILAKTCPPSLQTLAEKDIVVW-VDPLDGTREYTQG---FLDHVTVLIGISAHGKALAG 343
T W VDPLDGT+E+ + F TV I + + + G
Sbjct: 99 -----DTL--------------WIVDPLDGTKEFIKRNGEF----TVNIALVQNAVPVMG 135
Query: 344 VIHQP-----FYNYQNKES 357
VI+ P ++ + +
Sbjct: 136 VIYVPVKKELYFAVEGTGA 154
Score = 36.5 bits (85), Expect = 0.011
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 142 YKRIQGD---KSKNDFS--TEADRSAETCIISSLASLFPSITIIGEEGRESGHTHK 192
Y+ + D + K D S T ADR A I++ L ++ EEG+ + +
Sbjct: 42 YEDPKSDFEIERKADNSPLTIADRKAHEAIVAILNE--TPFPVLSEEGKHMDYAVR 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 4e-04
Identities = 49/331 (14%), Positives = 91/331 (27%), Gaps = 103/331 (31%)
Query: 22 LVEDKTVYAIQSLFYHYLFAYIVDFCAPLTKSKLRLVPIYQRIDKVMDVLEPFSTNEWSF 81
D L +L Y+ P + + ++ + L F E +
Sbjct: 48 FAADDEPTTPAELVGKFL-GYVSSLVEPSKVGQ------FDQVLNL--CLTEF---ENCY 95
Query: 82 INEN-IHTLWDSLSPQEQAKFPFNIRDLDWTKYLETYVKGILVYQLQDKLDPETRKYARR 140
+ N IH L L + ++L ++ Y R A+R
Sbjct: 96 LEGNDIHALAAKLLQENDTTLV-KTKEL-----IKNY------IT--------ARIMAKR 135
Query: 141 RYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIG---------EEGRESGHTH 191
+ + KS + A L I G EE R+ T+
Sbjct: 136 PFDK----KSNSALFRAVGEGN--------AQLV---AIFGGQGNTDDYFEELRDLYQTY 180
Query: 192 KMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVGDK--SKN-DF----STEADRSAE 244
V + I K +L L + +K ++ + ++ +
Sbjct: 181 H----------VLVGDLI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 245 TCIISSLASLFPSITIIGEEGRESGH---THKMCDVPPEWI------ISDVDEAILAKTC 295
++S S P I +I + H T K+ P + + + ++
Sbjct: 229 DYLLSIPIS-CPLIGVI-----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 296 P------PSLQTLAEKDIVV--WVDPLDGTR 318
S K I V ++ G R
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFI----GVR 309
Score = 32.7 bits (74), Expect = 0.27
Identities = 46/268 (17%), Positives = 77/268 (28%), Gaps = 106/268 (39%)
Query: 125 QLQDK----LDPETRKYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITII 180
QLQ++ L T +A + ++ +T A+ L F + +
Sbjct: 32 QLQEQFNKILPEPTEGFA-----------ADDEPTTPAE----------LVGKF--LGYV 68
Query: 181 GEEGRESGHTHKMCDVPPEWIISDVDEAIL--------AKTCPPSLQT--LAEKDIVGDK 230
E + V +++ + L A T + K+++
Sbjct: 69 SSL-VEPSKVGQFDQVL-NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI--- 123
Query: 231 SKNDFS--TEADRSAETCIISSL--------ASLFPSITIIG---------EEGRESGHT 271
KN + A R + S+L A L I G EE R+ T
Sbjct: 124 -KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV---AIFGGQGNTDDYFEELRDLYQT 179
Query: 272 HKMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGF------- 324
+ V + I K +L L LD + +TQG
Sbjct: 180 YH----------VLVGDLI--KFSAETLSELIR-------TTLDAEKVFTQGLNILEWLE 220
Query: 325 ----------LDHVTV---LIGIS--AH 337
L + + LIG+ AH
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Score = 29.2 bits (65), Expect = 2.8
Identities = 37/231 (16%), Positives = 72/231 (31%), Gaps = 69/231 (29%)
Query: 89 LWDSLSPQEQAKFPFNIRDLDWTKYLETYVKGILVYQLQDKLDPETRKYARRRYKRIQGD 148
+W+ + + F+I D+ + + ++ E K R Y + +
Sbjct: 1645 VWNRADNHFKDTYGFSILDI-----VINNPVNLTIH-----FGGEKGKRIRENYSAMIFE 1694
Query: 149 KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEA 208
+ D + ++ I + S T E+G
Sbjct: 1695 -TIVDGKLKTEK-----IFKEINEHSTSYTFRSEKG------------------------ 1724
Query: 209 ILAKTCP--PSLQTLAEKDIVGD-KSKNDFSTEADR--------SAETCIISSLASLFP- 256
+L+ T P+L TL EK D KSK +A +A ++SLA +
Sbjct: 1725 LLSATQFTQPAL-TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA----LASLADVMSI 1779
Query: 257 --SITII---GE------EGRESGHT-HKMCDVPPEWIISDVDEAILAKTC 295
+ ++ G E G + + M + P + + + L
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.004
Identities = 57/330 (17%), Positives = 106/330 (32%), Gaps = 81/330 (24%)
Query: 29 YAIQSLFYHYLFAYIVDFCAPLTKSKLRLVPIYQRIDKVMDVLEPFSTNEWSFINENIHT 88
Y + + + A++ +F + + + + ID + ++ + + +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRL------ 67
Query: 89 LWDSLSPQEQAKFPFNIRDLDWTKYLETYVKGILVYQLQDK-LDPE--TRKYARRRYKRI 145
W LS QE+ F + ++ Y L+ ++ + P TR Y +R
Sbjct: 68 FWTLLSKQEEMVQKF-VEEVLRINY------KFLMSPIKTEQRQPSMMTRMYIEQR---- 116
Query: 146 QGDKSKNDFSTEADRSAE-----TCIISSLASLFPS--ITIIGEEGRESGHT-------- 190
D+ ND A + + +L L P+ + I G G SG T
Sbjct: 117 --DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCL 172
Query: 191 -HKMCDVPPE---WI---ISDVDEAILAKTCPPSLQTLAEKDIVGDKSKNDFSTEADRSA 243
+K+ W+ + E +L LQ L + S++D S+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 244 ETCIISSLASLFPSITIIGEEGRESGHTHKMC-----DVPPEWIISDVDEAILAKTCPPS 298
+ I + L L S ++ C +V + + + K
Sbjct: 228 HS-IQAELRRLLKS------------KPYENCLLVLLNVQNAKAWNAFN--LSCKI---- 268
Query: 299 LQTLAEKDIVVWVDPLDGTREYTQGFLDHV 328
L T K + D L T LDH
Sbjct: 269 LLTTRFKQV---TDFLSAAT-TTHISLDHH 294
Score = 37.5 bits (86), Expect = 0.008
Identities = 45/355 (12%), Positives = 97/355 (27%), Gaps = 112/355 (31%)
Query: 68 MDVLEPFSTNEWSFINENIHTLWDSLSPQEQAKFPFNIRDLDWTKYLETYVKGILVYQLQ 127
MD F T E + ++I + F + + D K ++ K IL +
Sbjct: 7 MD----FETGEHQYQYKDI-------LSVFEDAF---VDNFD-CKDVQDMPKSILSKEEI 51
Query: 128 DKL----DPETRKY---------ARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLF 174
D + D + ++ + + ++ S+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---- 107
Query: 175 PSITIIGEEGRESGHTHKMCDVPPEWIISDV--DEAILA-KTCPPSLQTL-AEKDIV--G 228
+T + E R+ ++ + + +V + L + L L K+++ G
Sbjct: 108 --MTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDG 157
Query: 229 DKS--KNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI---I 283
K + A + C+ + W+
Sbjct: 158 VLGSGK---TWVA---LDVCLSYKVQCKMD------------FKIF--------WLNLKN 191
Query: 284 SDVDEAILAKTCPPSLQTL---AEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKA 340
+ E +L LQ L + + D + + L+ +
Sbjct: 192 CNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 341 LAGVIHQPFYNYQNKESGAQLGRTIWGIQDLGVGGYTPNPPPANKRIITTTRYES 395
L ++ N QN + W +L +I+ TTR++
Sbjct: 247 L--LV---LLNVQNAK--------AWNAFNLSC------------KILLTTRFKQ 276
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-
acetylglucosamine, N-acetylglucosamine-1-phosphate,
transferase; 1.90A {Candida albicans} PDB: 2yqh_A*
2yqj_A* 2yqs_A*
Length = 486
Score = 29.8 bits (66), Expect = 1.6
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 88 TLWDSLSPQEQAKFPFNIRDLDWTKYLETYVK 119
+DSL+ +Q +F + ++ L + V+
Sbjct: 23 QYYDSLTIDQQQEFIDQLSTIEEPAKLISTVE 54
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 29.9 bits (67), Expect = 1.8
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Query: 195 DVPPEWIISDVDEAI--LAKTCPPSLQTLAEKDIVGDKSKNDFSTEADRSAETCIISSLA 252
D+ P ++S D +I +AK P + + ++ + +E D+ E
Sbjct: 252 DIAPTLLLS--DSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRK 309
Query: 253 SLFPSITIIGEEGRESGHTHKMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKD 306
I ++ + + P + + + P S++ E+
Sbjct: 310 IKPSMWKNIIQDALALPPS----EWPDVDGGAARRHESQSASAPKSIRVWKERY 359
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 28.9 bits (65), Expect = 2.9
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 195 DVPPEWIISDVDEAI--LAKTCPPSLQTLAEKDIVGDKSKND 234
D+ +++ +E + +A+ P SL L + G + +
Sbjct: 232 DLAVNFVVR--EEHLWSVARYMPGSLGELDSLGLSGSEIRFH 271
Score = 27.7 bits (62), Expect = 7.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 276 DVPPEWIISDVDEAI--LAKTCPPSLQTLAE 304
D+ +++ +E + +A+ P SL L
Sbjct: 232 DLAVNFVVR--EEHLWSVARYMPGSLGELDS 260
>2r17_C Vacuolar protein sorting-associated protein 35; protein
transport, membrane, phosphorylation; 2.80A {Homo
sapiens}
Length = 298
Score = 28.4 bits (63), Expect = 3.9
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 49 PLTKSKLRLVPIYQRIDKVMDVLEPFSTNEWSFINENIHTLWDSLSPQ 96
PL + +L Y+ KV D E +SF ++ I L + +
Sbjct: 49 PLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAE 96
>3c8w_A Acetoacetate decarboxylase ADC; YP_094708.1, structural GE joint
center for structural genomics, JCSG, protein structu
initiative; HET: LCK CIT; 1.60A {Legionella pneumophila
subsp} SCOP: d.347.1.1
Length = 255
Score = 27.3 bits (60), Expect = 7.9
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 278 PPEWIISD---------VDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTR--EYTQGFLD 326
+ + D +L PP ++ L ++ D T +YT
Sbjct: 32 AGPYRFINREFFIIAYETDPDLLQAILPPDMELLEPVVKFEFIRMPDSTGFGDYT----- 86
Query: 327 HVTVLIGISAHGKALAGVIHQPFYNYQNKESGAQLGRTIWGI 368
++ + G+ + + + GR IWG
Sbjct: 87 ESGQVVPVRYKGEE---GGFTISM-FLDCHAPIAGGREIWGF 124
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 9.0
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 131 DPET-RKYARRRYKRIQ-----GDKSKNDFSTEADRSAE 163
+PE+ RK+ + KR+Q + ++ +A + E
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase,
alternative splicing; HET: UD1; 1.90A {Homo sapiens}
SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 27.4 bits (60), Expect = 9.4
Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 88 TLWDSLSPQEQAKFPFNIRDLDWTKYLETYVKGILVYQLQDK 129
W+ L +Q + ++ +++ + L + + + Q
Sbjct: 20 RFWNELEEAQQVELYAELQAMNF-EELNFFFQKAIEGFNQSS 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,292,437
Number of extensions: 375883
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 65
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)