RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10090
(395 letters)
>d1jp4a_ e.7.1.1 (A:) PIPase {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 304
Score = 90.1 bits (222), Expect = 5e-21
Identities = 86/173 (49%), Positives = 107/173 (61%), Gaps = 7/173 (4%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
+ IV S D T+ADR + I SSL+ FP +TIIGEE G +V E I
Sbjct: 30 DLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPG------EVDQELI 83
Query: 283 ISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALA 342
E IL + CP + E+D+VVWVDP+DGT+EYT+G LD+VTVLIGI+ GKA+A
Sbjct: 84 EDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYEGKAIA 143
Query: 343 GVIHQPFYNYQNKESGAQLGRTIWGIQDLGVGGYTPNPPPANKRIITTTRYES 395
G+I+QP+YNYQ A LGRTIWG+ LG G+ PA K IITTTR S
Sbjct: 144 GIINQPYYNYQ-AGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHS 195
Score = 53.5 bits (127), Expect = 1e-08
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 135 RKYARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMC 194
R I S D T+ADR + I SSL+ FP +TIIGEE G
Sbjct: 23 RCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPG------ 76
Query: 195 DVPPEWIISDVDEAILAKTCPPSLQTLAEKDIV 227
+V E I E IL + CP + E+D+V
Sbjct: 77 EVDQELIEDGQSEEILKQPCPSQYSAIKEEDLV 109
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 84.7 bits (208), Expect = 1e-18
Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 49/229 (21%)
Query: 208 AILAKTC---PPSLQTLAEKDIVGDKSK---NDFSTEADRSAETCIISSLASLFPSI--T 259
A +A+ C Q L E+ G+K+K DF T AD + I ++ + FP +
Sbjct: 16 ANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKK 75
Query: 260 IIGEEG----RESGHTHKMCDVPPEWIISDV---------------------DEAILAKT 294
I GEE + G M P E + D
Sbjct: 76 IFGEESNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPA 135
Query: 295 CPPSLQTLAEKDIVVWVDPLDGTREYTQGF-------------LDHVTVLIGISA--HGK 339
+ + + +WVDP+D T +Y +G L VTVLIG+ G
Sbjct: 136 LDSVEINIPQDILGIWVDPIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGV 195
Query: 340 ALAGVIHQPFYNYQNKESGAQLGRTIWGIQDLGVGGYTPNPPPANKRII 388
L GVI+QPF + Q+ + G+ WG+ LG ++ PP + +
Sbjct: 196 PLMGVINQPFVS-QDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTRSNS 243
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP
phosphatase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 354
Score = 63.2 bits (152), Expect = 1e-11
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 30/182 (16%)
Query: 219 QTLAEKDIVGDKSKNDFS--TEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCD 276
+ +KND S T D +A+T II+++ S FP ++GEE +
Sbjct: 25 SEVISHKDSTTITKNDNSPVTTGDYAAQTIIINAIKSNFPDDKVVGEESSSGLSDAFVSG 84
Query: 277 VPPEWIISDVDEAILAKTCPPSLQTL---------------------AEKDIVVWVDPLD 315
+ E +D K K +DP+D
Sbjct: 85 ILNEIKANDEVYNKNYKKDDFLFTNDQFPLKSLEDVRQIIDFGNYEGGRKGRFWCLDPID 144
Query: 316 GTREYTQGFLDHVTVLIGISAHGKALAGVIHQP-----FYNYQNKESGAQLGRTIWGIQD 370
GT+ + +G V + + G G I P Y Q+ + G ++
Sbjct: 145 GTKGFLRGE--QFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKGHESFGYIFRAVRG 202
Query: 371 LG 372
LG
Sbjct: 203 LG 204
>d2hhma_ e.7.1.1 (A:) Inositol monophosphatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 272
Score = 38.8 bits (89), Expect = 7e-04
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 136 KYARRRYKR---IQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHK 192
+ K + S D T D+ E +ISS+ +PS + IGEE +G
Sbjct: 17 EVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSI 76
Query: 193 MCDVPPEWII 202
+ D P WII
Sbjct: 77 LTD-NPTWII 85
Score = 38.1 bits (87), Expect = 0.001
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 223 EKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDVPPEWI 282
E +++ S D T D+ E +ISS+ +PS + IGEE +G + D P WI
Sbjct: 26 EMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTD-NPTWI 84
Query: 283 I 283
I
Sbjct: 85 I 85
>d1vdwa_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 253
Score = 38.1 bits (87), Expect = 0.001
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 201 IISDVDEAILAKTCPPSLQTLAEKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSI 258
II D D I+ P + + D + D+ AE IIS L ++
Sbjct: 12 IIRDFDHNIM-----PLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGVNV 64
Score = 31.1 bits (69), Expect = 0.17
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 133 ETRKYARRRYKRIQGD-----KSKNDFSTEADRSAETCIISSLASLFPSI 177
+ + + D + D+ AE IIS L ++
Sbjct: 15 DFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGVNV 64
>d1g0ha_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 252
Score = 37.8 bits (86), Expect = 0.001
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 201 IISDVDEAILAKTCPPSLQTLAEKDIVGDKSKNDFSTEADRSAETCIISSLASLFPSITI 260
I ++++ IL P + +VG D + D+ +E + L SL +I
Sbjct: 10 IAKEIEKEIL-----PYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYLKSLNVNIVS 64
Query: 261 IGEEGRESGHTHKMC 275
++ +
Sbjct: 65 EELGVIDNSSEWTVV 79
Score = 34.3 bits (77), Expect = 0.017
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 133 ETRKYARRRYKRIQGD-----KSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRES 187
E K + R D + D+ +E + L SL +I ++
Sbjct: 13 EIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYLKSLNVNIVSEELGVIDN 72
Query: 188 GHTHKMC 194
+
Sbjct: 73 SSEWTVV 79
>d1lbva_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 35.8 bits (81), Expect = 0.006
Identities = 10/51 (19%), Positives = 14/51 (27%)
Query: 227 VGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDV 277
VG + ADR AE + L ++ G D
Sbjct: 33 VGMGKDGTPTKAADRVAEDAALEILRKERVTVVTEESGVLGEGDVFVALDP 83
Score = 35.0 bits (79), Expect = 0.010
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 137 YARRRYKRIQGDKSKNDFSTEADRSAETCIISSLASLFPSITIIGEEGRESGHTHKMCDV 196
R R K + G + ADR AE + L ++ G D
Sbjct: 25 PLRERVKDV-GMGKDGTPTKAADRVAEDAALEILRKERVTVVTEESGVLGEGDVFVALDP 83
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
{Methanoculleus marisnigri [TaxId: 2198]}
Length = 264
Score = 29.5 bits (66), Expect = 0.60
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 286 VDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQGFLDHVTVLIGISAHGKALAGVI 345
+ +L P + L ++ V + G + + V + HGK
Sbjct: 40 TERDLLENYIPEGFE-LLAPEVQVAFNKFTEINWLHGGQYNLINVAAPVRFHGKKDELDG 98
Query: 346 HQPFYNYQNKESGAQLGRTIWGI 368
++NK + GR GI
Sbjct: 99 AYTLVVWENKTAPILGGREQTGI 121
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 26.2 bits (58), Expect = 2.4
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 269 GHTHKMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTRE--YTQGF 324
+++M D D ++ + L+ L + + V G RE Y
Sbjct: 31 TRSNRMHD------FEDSEQVVHQ------LERLIARGLATLVPRQSGQREDRYMHLI 76
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 27.4 bits (59), Expect = 3.0
Identities = 13/124 (10%), Positives = 27/124 (21%), Gaps = 2/124 (1%)
Query: 272 HKMCDVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVVWVDPLDGTREYTQ--GFLDHVT 329
K P IS + S Y G
Sbjct: 198 QKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATP 257
Query: 330 VLIGISAHGKALAGVIHQPFYNYQNKESGAQLGRTIWGIQDLGVGGYTPNPPPANKRIIT 389
+ I++ AL ++ + + + + L + + P + +T
Sbjct: 258 PVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLT 317
Query: 390 TTRY 393
Sbjct: 318 AVYV 321
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 25.1 bits (55), Expect = 4.3
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 195 DVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVGDK 230
+VPP + +D +A+ P + + + VG +
Sbjct: 22 NVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMR 57
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 26.9 bits (59), Expect = 4.7
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 90 WDSLSPQEQAKFPFNIRDLDWTKYLETYVKGILVYQ 125
W+ L +Q + ++ +++ + + K I +
Sbjct: 22 WNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFN 57
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 25.3 bits (55), Expect = 5.8
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 195 DVPPEWIISDVDEAILAKTCPPSLQTLAEKDIVGDKSKN 233
D+ +++ + +A+ P SL L + G + +
Sbjct: 39 DLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRF 77
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase C, RluC {Escherichia coli [TaxId: 562]}
Length = 227
Score = 25.7 bits (55), Expect = 10.0
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 16 WWYCYHLVEDKTVYAIQSLFYHYLFAYIVDFCAPLTKSKLRLV-PIYQRIDKVMDVLE 72
Y + + A L +L A + F P T +R+ P+ + + + + +
Sbjct: 167 DRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKMR 224
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,560,376
Number of extensions: 72255
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 24
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)