BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10091
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JP4|A Chain A, Crystal Structure Of An Enzyme Displaying Both Inositol-
Polyphosphate 1-Phosphatase And 3'-Phosphoadenosine-5'-
Phosphate Phosphatase Activities
Length = 308
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAIL 182
RSH+ +V + AM PD V+RVGGAGNK++ ++EGKA AYV+A+ GCK+WDTCAPE IL
Sbjct: 196 RSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVIL 255
Query: 183 NAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYISRIPQEVKDKLV 236
+A GG LTD+HG P Y V +N GV+A ++YY SR+P+ VK L+
Sbjct: 256 HAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAAL--RNYEYYASRVPESVKSALI 307
>pdb|2WEF|A Chain A, Human 3'(2'), 5'-Bisphosphate Nucleotidase 1 (Bpnt1) In
Complex With Amp, Po4 And Magnesium
Length = 311
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAIL 182
RSH+ +V + AM PD V+RVGGAGNK++ ++EGKA AYV+A+ GCK+WDTCAPE IL
Sbjct: 192 RSHSNKLVTDCVAAMNPDAVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVIL 251
Query: 183 NAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYISRIPQEVKDKLV 236
+A GG LTD+HG Y V +N GV+AT +DYY SR+P+ +K+ LV
Sbjct: 252 HAVGGKLTDIHGNVLQYHKDVKHMNSAGVLATL--RNYDYYASRVPESIKNALV 303
>pdb|1INP|A Chain A, Crystal Structure Of Inositol Polyphosphate 1-phosphatase
At 2.3 Angstroms Resolution
Length = 400
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 122 LRSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAI 181
+ + ++ L + + + R GAG K L V+ G A Y+++ +WD+CA AI
Sbjct: 265 ISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCAAHAI 324
Query: 182 LNAQGGLLTDVHGVPYDYTDTVDPL-------------------NKGGVIATAVKSEHDY 222
L A GG + D+ DT L NKGG+IA + + +
Sbjct: 325 LRAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLET 384
Query: 223 YISRIPQEV 231
++SR+ Q +
Sbjct: 385 FLSRLLQHL 393
>pdb|2HHM|A Chain A, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|2HHM|B Chain B, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|1AWB|A Chain A, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
pdb|1AWB|B Chain B, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
Length = 276
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 112 DFCAPLTKSKLRSHNT-SVVQAVLDAMK-----PDEVVR-VGGAGNKVLLVMEGKAHAYV 164
D L ++L S T V+ VL M+ P +R VG A + LV G A AY
Sbjct: 152 DITKSLLVTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYY 211
Query: 165 YANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYD 198
C WD I+ GG+L DV G P+D
Sbjct: 212 EMGIHC--WDVAGAGIIVTEAGGVLMDVTGGPFD 243
>pdb|1IMA|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMA|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMC|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMC|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMD|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IMD|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IME|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IME|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMF|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|4AS4|A Chain A, Structure Of Human Inositol Monophosphatase 1
pdb|4AS4|B Chain B, Structure Of Human Inositol Monophosphatase 1
Length = 277
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 112 DFCAPLTKSKLRSHNT-SVVQAVLDAMK-----PDEVVR-VGGAGNKVLLVMEGKAHAYV 164
D L ++L S T V+ VL M+ P +R VG A + LV G A AY
Sbjct: 153 DITKSLLVTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYY 212
Query: 165 YANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYD 198
C WD I+ GG+L DV G P+D
Sbjct: 213 EMGIHC--WDVAGAGIIVTEAGGVLMDVTGGPFD 244
>pdb|4AS5|A Chain A, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|B Chain B, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|C Chain C, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|D Chain D, Structure Of Mouse Inositol Monophosphatase 1
Length = 277
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 145 VGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYD 198
VG A + LV G A AY C WD I+ GG+L DV G P+D
Sbjct: 193 VGTAAVNMCLVATGGADAYYEMGIHC--WDMAGAGIIVTEAGGVLMDVTGGPFD 244
>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
Length = 277
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 145 VGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYD 198
VG A + LV G A AY C WD I+ GG+L DV G P+D
Sbjct: 193 VGTAALNMCLVAAGAADAYYEMGIHC--WDVAGAGIIVTEAGGVLLDVTGGPFD 244
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 171 KRWDTCAPEAILNAQGGLLTD-VHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYIS 225
K WD A I++ GG+ TD + VP D+ + KG + ++ + HD +S
Sbjct: 291 KIWDHAAGNVIVHEAGGIHTDAMEDVPLDFGNGRTLATKGVIASSGPRELHDLVVS 346
>pdb|2FVZ|A Chain A, Human Inositol Monophosphosphatase 2
pdb|2FVZ|B Chain B, Human Inositol Monophosphosphatase 2
pdb|2FVZ|C Chain C, Human Inositol Monophosphosphatase 2
pdb|2FVZ|D Chain D, Human Inositol Monophosphosphatase 2
Length = 273
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 143 VRVGGAGNKVLL-VMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYD 198
VRV G+ L + G A AY C WD A I+ GG++ D G P D
Sbjct: 186 VRVIGSSTLALCHLASGAADAYYQFGLHC--WDLAAATVIIREAGGIVIDTSGGPLD 240
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
Length = 299
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 143 VRVGGAGNKVLL-VMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYD 198
VRV G+ L + G A AY C WD A I+ GG++ D G P D
Sbjct: 212 VRVIGSSTLALCHLASGAADAYYQFGLHC--WDLAAATVIIREAGGIVIDTSGGPLD 266
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 17 DVIPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDN 58
DVIP+D+ +NA ++ Y KT+ LP NYV S DN
Sbjct: 262 DVIPSDLQLNA-------TSYMVYNKTA-ALPTQNYVDSIDN 295
>pdb|3GPU|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec4- Loop Deletion Complex
Length = 256
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 155 VMEGKAHAYVYANAG--CKRWDTCAPEAILNAQG 186
VM+G+ H YVY G CKR T + ++ +G
Sbjct: 214 VMKGQHHLYVYGRQGNPCKRCGTPIEKTVVAGRG 247
>pdb|1JEB|A Chain A, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
Mouse Beta2)
pdb|1JEB|C Chain C, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
Mouse Beta2)
Length = 142
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 120 SKLRSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYV 164
++LR+H + VV AV DA+K + +GGA +K+ + HAY+
Sbjct: 54 AQLRAHGSKVVAAVGDAVK--SIDDIGGALSKL-----SELHAYI 91
>pdb|3W4U|A Chain A, Human Zeta-2 Beta-2-s Hemoglobin
pdb|3W4U|C Chain C, Human Zeta-2 Beta-2-s Hemoglobin
pdb|3W4U|E Chain E, Human Zeta-2 Beta-2-s Hemoglobin
Length = 142
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 120 SKLRSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYV 164
++LR+H + VV AV DA+K + +GGA +K+ + HAY+
Sbjct: 54 AQLRAHGSKVVAAVGDAVK--SIDDIGGALSKL-----SELHAYI 91
>pdb|1ZZ6|A Chain A, Crystal Structure Of Apo-hppe
pdb|1ZZ6|B Chain B, Crystal Structure Of Apo-hppe
pdb|1ZZ7|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ7|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ8|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|C Chain C, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ9|A Chain A, Crystal Structure Of Feii Hppe
pdb|1ZZ9|B Chain B, Crystal Structure Of Feii Hppe
pdb|1ZZ9|C Chain C, Crystal Structure Of Feii Hppe
pdb|1ZZB|A Chain A, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZB|B Chain B, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZC|A Chain A, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|1ZZC|B Chain B, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|2BNM|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNM|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNN|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNN|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNO|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNO|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|3SCF|A Chain A, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|B Chain B, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|C Chain C, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCG|A Chain A, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|B Chain B, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|C Chain C, Fe(Ii)-Hppe With R-Hpp
Length = 198
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Query: 128 SVVQAVLDAM--KPDEV-VRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAP-EAILN 183
S+V V+D + PD+ G AGN+ L V+EG+ H K D P EA+L
Sbjct: 116 SLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIH--------MKWGDKENPKEALLP 167
Query: 184 AQGGLLTDVHGVPYDYT 200
+ + H VP+ +T
Sbjct: 168 TGASMFVEEH-VPHAFT 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,361,543
Number of Sequences: 62578
Number of extensions: 296191
Number of successful extensions: 711
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 16
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)