RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10091
(237 letters)
>gnl|CDD|238818 cd01640, IPPase, IPPase; Inositol polyphosphate-1-phosphatase, a
member of the Mg++ dependent family of inositol
monophosphatase-like domains, hydrolyzes the 1' position
phosphate from inositol 1,3,4-trisphosphate and inositol
1,4-bisphosphate. Members in this group may also exhibit
3'-phosphoadenosine 5'-phosphate phosphatase activity,
and they all appear to be inhibited by lithium. IPPase
is one of the proposed targets of Li+ therapy in
manic-depressive illness.
Length = 293
Score = 135 bits (342), Expect = 1e-38
Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 123 RSHNTSVVQAVL-DAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAI 181
SH+ SV + L A DEV+R GGAG KVL V+EG A AYV++ G K+WD CAPEAI
Sbjct: 190 TSHSHSVKEVQLITAGNKDEVLRAGGAGYKVLQVLEGLADAYVHSTGGIKKWDICAPEAI 249
Query: 182 LNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYISR 226
L A GG +TD+HG P Y+ V P+NKGG++AT ++S H+ Y+ +
Sbjct: 250 LRALGGDMTDLHGEPLSYSKAVKPVNKGGLLAT-IRSNHEAYLDK 293
>gnl|CDD|238816 cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, is a bacterial member of the inositol
monophosphatase family. It has been proposed that CysQ
helps control intracellular levels of PAPS, which is an
intermediate in cysteine biosynthesis (a principal route
of sulfur assimilation).
Length = 242
Score = 69.9 bits (172), Expect = 2e-14
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAIL 182
RSH ++A+L A+ EVV +G K LV EG+A Y WDT A +A+L
Sbjct: 156 RSHPDEELEALLAALGVAEVVSIGS-SLKFCLVAEGEADIYPRL-GPTMEWDTAAGDAVL 213
Query: 183 NAQGGLLTDVHGVPYDYTDTVDPLNKGGVIA 213
A GG ++D+ G P Y D LN IA
Sbjct: 214 RAAGGAVSDLDGSPLTYNRE-DFLN-PDFIA 242
>gnl|CDD|215930 pfam00459, Inositol_P, Inositol monophosphatase family.
Length = 269
Score = 61.6 bits (150), Expect = 2e-11
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 142 VVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTD 201
V VG A K+ LV EG+A AY+ K WD A AIL GG++TD+ G P D
Sbjct: 187 VRSVGSAALKLCLVAEGRADAYIEF-GRLKPWDIAAGVAILREAGGVVTDLDGGPLDL-- 243
Query: 202 TVDPLNKGGVIATAVKSEHDYYISRIPQEVK 232
K VIA K + + + +
Sbjct: 244 -----LKRRVIAANPKVLAELLAALLRDIIL 269
>gnl|CDD|224139 COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS)
3'-phosphatase [Inorganic ion transport and metabolism].
Length = 276
Score = 59.6 bits (145), Expect = 1e-10
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 106 FFAYIVDFCAPLTKSKL----RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAH 161
I KS L RSH + + +L + + V +G +G K LV EG A
Sbjct: 149 LRKKIPIRVRTPPKSLLVVASRSHRSPETEELLAQLGFIQTVSIGSSGLKFCLVAEGAAD 208
Query: 162 AYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYDYT---DTVDPLNKGGVIATA 215
Y WDT A A+L A GG +TD+ G P Y LN G + +
Sbjct: 209 IYPRF-GPTMEWDTAAGHAVLEAAGGHVTDLDGKPLTYNKRDYRESFLNPGFIASGE 264
>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended
(e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding
proteins, many of which may function as fatty acyl CoA
reductases (FAR), acting on medium and long chain fatty
acids, and have been reported to be involved in diverse
processes such as biosynthesis of insect pheromones,
plant cuticular wax production, and mammalian wax
biosynthesis. In Arabidopsis thaliana, proteins with
this particular architecture have also been identified
as the MALE STERILITY 2 (MS2) gene product, which is
implicated in male gametogenesis. Mutations in MS2
inhibit the synthesis of exine (sporopollenin),
rendering plants unable to reduce pollen wall fatty
acids to corresponding alcohols. This N-terminal domain
shares the catalytic triad (but not the upstream Asn)
and characteristic NADP-binding motif of the extended
SDR family. Extended SDRs are distinct from classical
SDRs. In addition to the Rossmann fold (alpha/beta
folding pattern with a central beta-sheet) core region
typical of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 320
Score = 58.5 bits (142), Expect = 4e-10
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 3 GIIRSIYCNPSATADVIPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITW 62
GI+R++ +P+A AD+IP D+ NAL+ +A YS + L +++ SS N TW
Sbjct: 250 GILRTMNADPNAVADIIPVDVVANALLAAAAYSGV----RKPRELEVYHCGSSDVNPFTW 305
Query: 63 LEFSNKTFGAATKIP 77
E K P
Sbjct: 306 GEAEELINQYLKKNP 320
>gnl|CDD|130398 TIGR01331, bisphos_cysQ, 3'(2'),5'-bisphosphate nucleotidase,
bacterial. Sulfate is incorporated into
3-phosphoadenylylsulfate, PAPS, for utilization in
pathways such as methionine biosynthesis. Transfer of
sulfate from PAPS to an acceptor leaves adenosine
3'-5'-bisphosphate, APS. This model describes a form
found in bacteria of the enzyme 3'(2'),5'-bisphosphate
nucleotidase, which removes the 3'-phosphate from APS to
regenerate AMP and help drive the cycle [Central
intermediary metabolism, Sulfur metabolism].
Length = 249
Score = 47.8 bits (114), Expect = 1e-06
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCK-RWDTCAPEAI 181
RSH L + D GG+ K LV EG A +Y G WDT A A+
Sbjct: 160 RSHAEEKTTEYLANLGYDLRT-SGGSSLKFCLVAEGSAD--IYPRLGPTGEWDTAAGHAV 216
Query: 182 LNAQGGLLTDVHGVPYDYTDTVDPLN 207
L A GG + D+ G P Y N
Sbjct: 217 LAAAGGAIFDLDGSPLLYGKRESFRN 242
>gnl|CDD|238815 cd01637, IMPase_like, Inositol-monophosphatase-like domains. This
family of phosphatases is dependent on bivalent metal
ions such as Mg++, and many members are inhibited by Li+
(which is thought to displace a bivalent ion in the
active site). Substrates include
fructose-1,6-bisphosphate, inositol poly- and
monophosphates, PAP and PAPS,
sedoheptulose-1,7-bisphosphate and probably others.
Length = 238
Score = 46.9 bits (112), Expect = 2e-06
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 144 RVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTV 203
G AG + V G+ AY+ + WD A I+ GG++TD+ G + +
Sbjct: 176 IYGSAGLDLAYVAAGRLDAYLSSGLNP--WDYAAGALIVEEAGGIVTDLDG------EPL 227
Query: 204 DPLNKGGVIAT 214
D LN+ G+IA
Sbjct: 228 DTLNRSGIIAA 238
>gnl|CDD|238775 cd01517, PAP_phosphatase, PAP-phosphatase_like domains.
PAP-phosphatase is a member of the inositol
monophosphatase family, and catalyses the hydrolysis of
3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In
Saccharomyces cerevisiae, HAL2 (MET22) is involved in
methionine biosynthesis and provides increased salt
tolerance when over-expressed. Bacterial members of this
domain family may differ in their substrate specificity
and dephosphorylate different targets, as the substrate
binding site does not appear to be conserved in that
sub-set.
Length = 274
Score = 42.3 bits (100), Expect = 8e-05
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 151 KVLLVMEGKAHAYVYANAGC----KRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPL 206
K V G A Y+ K WD A I+ GG +TD G P D+ L
Sbjct: 193 KYAAVARGAADFYLRLPLSMSYREKIWDHAAGVLIVEEAGGKVTDADGKPLDFGKGRKLL 252
Query: 207 NKGGVIAT 214
N GG+IA
Sbjct: 253 NNGGLIAA 260
>gnl|CDD|238814 cd01636, FIG, FIG, FBPase/IMPase/glpX-like domain. A superfamily of
metal-dependent phosphatases with various substrates.
Fructose-1,6-bisphospatase (both the major and the
glpX-encoded variant) hydrolyze
fructose-1,6,-bisphosphate to fructose-6-phosphate in
gluconeogenesis. Inositol-monophosphatases and inositol
polyphosphatases play vital roles in eukaryotic
signalling, as they participate in metabolizing the
messenger molecule Inositol-1,4,5-triphosphate. Many of
these enzymes are inhibited by Li+.
Length = 184
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 124 SHNTSVVQAVLDAMKPDEVVR-VGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAIL 182
SH + + +R VG A K+ LV G A Y + WD A AI+
Sbjct: 115 SHKRVDEKKAELQLLAVYRIRIVGSAVAKMCLVALGLADIYYEPGGKRRAWDVAASAAIV 174
Query: 183 NAQGGLLTDV 192
GG++TD
Sbjct: 175 REAGGIMTDW 184
>gnl|CDD|223559 COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related
enzymes of inositol monophosphatase family [Carbohydrate
transport and metabolism].
Length = 260
Score = 39.6 bits (93), Expect = 7e-04
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 144 RVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTV 203
R G A + V G+ +V G + WD A I+ GG++TD+ G P D
Sbjct: 185 RYGSAALDLAYVAAGRLDGFVEF--GLRPWDIAAGVLIVREAGGIVTDLDGGPLDP---- 238
Query: 204 DPLNKGGVIATAVKSEHD 221
N GG I HD
Sbjct: 239 ---NSGGSIVAGNPKLHD 253
>gnl|CDD|182848 PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase;
Provisional.
Length = 246
Score = 38.5 bits (90), Expect = 0.002
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKR------WDTC 176
RSH + ++ L + + +G + K LV EG+A Y R WDT
Sbjct: 156 RSHADAELKEYLQQLGEHQTTSIGSS-LKFCLVAEGQAQLY-------PRFGPTNIWDTA 207
Query: 177 APEAILNAQGGLLTDVHGVPYDYTDTVDPLNKG 209
A A+ A G + D G DYT LN G
Sbjct: 208 AGHAVAIAAGAHVHDWQGKTLDYTPRESFLNPG 240
>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase.
Length = 491
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 3 GIIRSIYCNPSATADVIPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITW 62
G + +P++ DVIPADM +NA++ + A + S + I++ SS N + +
Sbjct: 292 GKLTCFLADPNSVLDVIPADMVVNAMIVAM---AAHAGGQGSEI--IYHVGSSLKNPVKF 346
Query: 63 LEFSNKTFGAATKIP 77
+ + +K P
Sbjct: 347 SNLHDFAYRYFSKNP 361
>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein. This family
represents the C-terminal region of the male sterility
protein in a number of arabidopsis and drosophila. A
sequence-related jojoba acyl CoA reductase is also
included.
Length = 245
Score = 36.4 bits (85), Expect = 0.006
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1 MAGIIRSIYCNPSATADVIPADMAINAL 28
G++ I +P A D++P D NA+
Sbjct: 218 GLGVLPDILGDPDARLDLVPVDYVANAI 245
>gnl|CDD|238817 cd01639, IMPase, IMPase, inositol monophosphatase and related
domains. A family of Mg++ dependent phosphatases,
inhibited by lithium, many of which may act on inositol
monophosphate substrate. They dephosphorylate inositol
phosphate to generate inositol, which may be recycled
into inositol lipids; in eukaryotes IMPase plays a vital
role in intracellular signaling. IMPase is one of the
proposed targets of Li+ therapy in manic-depressive
illness. This family contains some bacterial members of
the inositol monophosphatase family classified as
SuhB-like. E. coli SuhB has been suggested to
participate in posstranscriptional control of gene
expression, and its inositol monophosphatase activity
doesn't appear to be sufficient for its cellular
function. It has been proposed, that SuhB plays a role
in the biosynthesis of phosphatidylinositol in
mycobacteria.
Length = 244
Score = 33.3 bits (77), Expect = 0.065
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 162 AYV-------YANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIAT 214
AYV Y G K WD A I+ GGL+TD G P+D L G ++A
Sbjct: 191 AYVAAGRLDGYWERGLKPWDVAAGALIVREAGGLVTDFDGGPFD-------LMSGNILAG 243
>gnl|CDD|238819 cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of
Mg++ dependend phosphatases, related to inositol
monophosphatases. These enzymes may dephosphorylate
fructose-1,6-bisphosphate, inositol monophospate,
3'-phosphoadenosine-5'-phosphate, or similar
substrates.
Length = 248
Score = 31.5 bits (72), Expect = 0.26
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 122 LRSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAI 181
+ + + + A++ + R GG LV G+ + AG K +D A I
Sbjct: 158 FTPGDRAAFERLARAVR---LTRYGGDCYAYALVASGRVD--LVVEAGLKPYDVAALIPI 212
Query: 182 LNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIAT 214
+ GG++TD G P G V+A
Sbjct: 213 IEGAGGVITDWDGGP-------LTGGSGRVVAA 238
>gnl|CDD|233360 TIGR01330, bisphos_HAL2, 3'(2'),5'-bisphosphate nucleotidase, HAL2
family. Sulfate is incorporated into
3-phosphoadenylylsulfate, PAPS, for utilization in
pathways such as methionine biosynthesis. Transfer of
sulfate from PAPS to an acceptor leaves adenosine
3'-5'-bisphosphate, APS. This model describes a form
found in plants of the enzyme 3'(2'),5'-bisphosphate
nucleotidase, which removes the 3'-phosphate from APS to
regenerate AMP and help drive the cycle. Sensitivity of
this essential enzyme to sodium and other metal ions
results is responsible for characterization of this
enzyme as a salt tolerance protein. Some members of this
family are active also as inositol 1-monophosphatase.
Length = 353
Score = 31.8 bits (72), Expect = 0.28
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 171 KRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIA 213
K WD A I+ GG++TD G P D+ GVIA
Sbjct: 287 KIWDHAAGNVIVEEAGGIVTDAMGKPLDFGKGRTLALDKGVIA 329
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 31.4 bits (71), Expect = 0.47
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 11 NPSATADVIPADMAINA-LVCSAWYSA------NSYYKKTSPVLPI 49
+P+ DV+PADM +NA L A + N Y +S V P+
Sbjct: 414 DPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPL 459
>gnl|CDD|213680 TIGR02067, his_9_HisN, histidinol-phosphatase, inositol
monophosphatase family. This subfamily belongs to the
inositol monophosphatase family (pfam00459). The members
of this family consist of no more than one per species
and are found only in species in which histidine is
synthesized de novo but no histidinol phosphatase can be
found in either of the two described families
(TIGR01261, TIGR01856). In at least one species, the
member of this family is found near known histidine
biosynthesis genes. The role as histidinol-phosphatase
wsa first proven in Corynebacterium glutamicum [Amino
acid biosynthesis, Histidine family].
Length = 251
Score = 28.8 bits (65), Expect = 2.0
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 125 HNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNA 184
N + + A + + R GG L+V G V G WD A ++
Sbjct: 161 ENRPAFERLRRAAR---LTRYGGDCYAYLMVAGGAVDIVV--EPGLSPWDIAALIPVIEE 215
Query: 185 QGGLLTDVHGVPYDYTDTVDPLNKGGVIATA 215
GG TD G P + GG +A
Sbjct: 216 AGGCFTDWDGKP--------APDGGGAVAAG 238
>gnl|CDD|189017 cd09610, M3B_PepF_5, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 472
Score = 28.7 bits (65), Expect = 2.8
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 61 TWLEFSNKTFGAATKIPSSKALWW-YCYHLVEDKTVYAIQSLFYHYFFAY 109
WLE + FG + ++ + WW Y H + + FY Y +A+
Sbjct: 371 LWLEELREMFGDSVELTENYRWWWSYIPHFIH--------TPFYVYAYAF 412
>gnl|CDD|197342 cd08525, Reelin_subrepeat_1, N-terminal subrepeat in the tandem
repeat unit of reelin and related proteins. Reelin is
an extracellular glycoprotein involved in neuronal
development, specifically in the brain cortex. It
contains 8 tandemly repeated units, each of which is
composed of two highly similar subrepeats and a central
EGF domain. This model characterizes the N-terminal
subrepeat, which directly contacts the C-terminal
subrepeat and the EGF domain in a compact arrangement.
Consecutive reelin repeat units are packed together to
form an overall rod-like molecular structure. Reelin
repeats 5 and 6 are reported to interact with neuronal
receptors, the apolipoprotein E receptor 2 (ApoER2) and
the very-low-density lipoprotein receptor (VLDLR),
triggering a signaling cascade upon binding and
subsequent tyrosine phosphorylation of the cytoplasmic
disabled-1 (Dab1).
Length = 161
Score = 27.7 bits (62), Expect = 3.9
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 19 IPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITW 62
+P+ + L S+ Y ++++ +P+ N S+ R W
Sbjct: 98 LPSSPGCSELHPSSVYESSTFNGWKRITIPLPNATLSSATRFRW 141
>gnl|CDD|227770 COG5483, COG5483, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 28.0 bits (62), Expect = 4.7
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 71 GAATKIPSSKALWWYCYHLVEDKTVYA 97
+ + YC+ T+ +
Sbjct: 110 RVVKVFMCEEEIMEYCHRKFPADTLKS 136
>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein. Members of this
family are integral membrane proteins that are around
500 residues in length. LMBR1 is not involved in
preaxial polydactyly, as originally thought. Vertebrate
members of this family may play a role in limb
development. A member of this family has been shown to
be a lipocalin membrane receptor.
Length = 419
Score = 27.8 bits (62), Expect = 5.7
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 18 VIPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITWL 63
++P D+A N ++ S S + S + ++N V N + +
Sbjct: 49 LLPFDVASNEVLLSYPRSYYGQWLNGSLIHGLWNLVYWFSNLLLFF 94
>gnl|CDD|236753 PRK10757, PRK10757, inositol monophosphatase; Provisional.
Length = 267
Score = 27.1 bits (60), Expect = 8.5
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 144 RVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAILNAQGGLLTDVHG 194
R G A + V G+ + G K WD A E ++ GG+++D G
Sbjct: 184 RTGSAALDLAYVAAGRVDGFF--EIGLKPWDFAAGELLVREAGGIVSDFTG 232
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 27.3 bits (61), Expect = 9.5
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 19 IPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITWLEFSNKTFGAAT 74
N +V +A S + +P L + + L S + A +
Sbjct: 783 PQPGPLFNTIVFTASAPVPSSTPRLTPDL------KKPGSALVHLSISPEYTLAGS 832
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.415
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,851,982
Number of extensions: 1061172
Number of successful extensions: 965
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 35
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)