RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10091
(237 letters)
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 131 bits (331), Expect = 3e-37
Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAIL 182
RSH+ +V + AM PD V+RVGGAGNK++ ++EGKA AYV+A+ GCK+WDTCAPE IL
Sbjct: 196 RSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVIL 255
Query: 183 NAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYISRIPQEVKDKLV 236
+A GG LTD+HG P Y V +N GV+A ++YY SR+P+ VK L+
Sbjct: 256 HAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAAL--RNYEYYASRVPESVKSALI 307
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 117 bits (294), Expect = 4e-31
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 123 RSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAPEAIL 182
S ++ A L + + + R GAG K L V+ G A Y+++ +WD+CA AIL
Sbjct: 267 TSEKETIKGA-LSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCAAHAIL 325
Query: 183 NAQGGLLTDVHGVPYDY-------------------TDTVDPLNKGGVIATAVKSEHDYY 223
A GG + D+ NKGG+IA + + + +
Sbjct: 326 RAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETF 385
Query: 224 ISRIPQEVK 232
+SR+ Q +
Sbjct: 386 LSRLLQHLA 394
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Length = 357
Score = 56.9 bits (137), Expect = 8e-10
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 123 RSH-NTSVVQAVLDAMKPDEVVRVGGAGNKVLLVMEGKAHAYV----YANAGCKRWDTCA 177
+ H + A+ + + + + + K L+ G A Y+ + K WD A
Sbjct: 239 KGHSSHDEQTAIKNKLNISKSLHLDSQ-AKYCLLALGLADVYLRLPIKLSYQEKIWDHAA 297
Query: 178 PEAILNAQGGLLTD-VHGVPYDYTDTVDPLNKGGVIATAVKSEHD 221
I++ GG+ TD + VP D+ + KG + ++ + HD
Sbjct: 298 GNVIVHEAGGIHTDAMEDVPLDFGNGRTLATKGVIASSGPRELHD 342
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 45.7 bits (109), Expect = 4e-06
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 123 RSHNTSVVQAVLDAMKPD----EVVRVGGAGNKVLLVMEGKAHAYVYANAGCKRWDTCAP 178
RSH T + + +K E++ G + K+ LV EGKA Y A WDT A
Sbjct: 195 RSHLTPETETYIADLKKKHGNVELISSGSS-IKICLVAEGKADVYP-RFAPTMEWDTAAG 252
Query: 179 EAILNAQGGLLTDV-HGVPYDY 199
AI A G + P Y
Sbjct: 253 HAIARAAGMEVYQAGKEEPLRY 274
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 40.3 bits (94), Expect = 3e-04
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 3 GIIRSIYCNPSATADVIPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITW 62
S A D +P A+ A S + ++ ++ D+ I
Sbjct: 313 YEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGS----SLAGFATYHVMNPHDDGIGL 368
Query: 63 LEF 65
E+
Sbjct: 369 DEY 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.031
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 34 YSANSYYKKTSPVLP-----IFNYV----SSTDNRITWLEFS----NKTFGAATKIPSSK 80
Y+ + + P ++++ + ++ F + F KI
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDS 511
Query: 81 ALWWYC---YHLVEDKTVY----AIQSLFYHYFFAYIVDFCAPLTKSKLRSHNTSVVQAV 133
W + ++ Y Y I+DF + ++ + S T +++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 134 LDAMKPDEVV 143
L M DE +
Sbjct: 572 L--MAEDEAI 579
Score = 27.5 bits (60), Expect = 4.3
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 57 DNRITWLEFSNKTFGAATKIPSS--KALWWYCYHLVEDKTVYAIQSLFYHYFFAYIVDFC 114
D +I WL N P + + L Y + + T + S I
Sbjct: 181 DFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 115 APLTKSKLRSHNTSVVQAVLDAMKPDEVVRVGGAGNKVLL 154
L KSK + ++ VL ++ + K+LL
Sbjct: 235 RRLLKSK--PYENCLL--VLLNVQNAKAWNAFNLSCKILL 270
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 32.6 bits (75), Expect = 0.078
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 169 GCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHD 221
G WD I+ GG+L DV G P+D L VIA++ K+ +
Sbjct: 215 GIHCWDVAGAGIIVTEAGGVLLDVTGGPFD-------LMSRRVIASSNKTLAE 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.099
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 6/22 (27%)
Query: 8 IYCNPSATADVIPADMAINALV 29
+Y + SA PA +AI A +
Sbjct: 31 LYADDSA-----PA-LAIKATM 46
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 31.4 bits (72), Expect = 0.18
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 13/60 (21%)
Query: 162 AYV-------YANAGCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIAT 214
V + N K WD A +T + G D+ L I +
Sbjct: 198 MRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDH------LKGAPFIIS 251
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 31.4 bits (72), Expect = 0.19
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 169 GCKRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYISRIP 228
G WD A I+ GG++ D G P D L V+A + + E I++
Sbjct: 211 GLHCWDLAAATVIIREAGGIVIDTSGGPLD-------LMACRVVAASTR-EMAMLIAQAL 262
Query: 229 QEV 231
Q +
Sbjct: 263 QTI 265
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 30.8 bits (70), Expect = 0.34
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 171 KRWDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIAT 214
+ +D A I GG +T++ G D + ++A
Sbjct: 197 RIYDAAAGVFIAEKAGGKVTELDGESLGNKKF-DMQERLNIVAA 239
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 30.3 bits (69), Expect = 0.53
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 173 WDTCAPEAILNAQGGLLTDVHGVPYDYTDTVDPLNKGGVIATAVKSEHDYYISRIPQEVK 232
WD IL G +++ G P ++ I + H + +
Sbjct: 215 WDFAGGLVILYEVNGQASNLLGEPLT-------ISGPNSILVGNRGLHQEISNDYLEPHH 267
Query: 233 DKLVS 237
D L+
Sbjct: 268 DALIQ 272
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.61
Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 71/216 (32%)
Query: 63 LEFSNKTFGAATKIPSSKALWWYCYHLVED--KTV-------------YAIQSLFYHYFF 107
LE + A ++ L E K + L F
Sbjct: 16 LEHV---------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK-FL 65
Query: 108 AYIVDFCAPLTKSKLRSHNTSVVQAVLDA-----MKPDEV----VRVGGAGNKVLLVMEG 158
Y+ P V+ L ++ +++ ++ + L+ +
Sbjct: 66 GYVSSLVEPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 159 KAHAYVYANAGCKR-WDTCAPEAILNA--------------QGGL------LTDVHGVPY 197
Y+ A KR +D + A+ A QG L D+ Y
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL----Y 177
Query: 198 D-YTDTVDPLNKGGVIATAVKSEHDYYISRIPQEVK 232
Y V L I + +E + R + +
Sbjct: 178 QTYHVLVGDL-----IKFS--AETLSELIRTTLDAE 206
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Length = 144
Score = 26.4 bits (58), Expect = 5.8
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 20/74 (27%)
Query: 12 PSATADVIPADMAINALVCSAWYSANSYYKKTSPVLPIFNYVSSTDNRITWLEFSNKTFG 71
P + + A INA S+ ++ + +++ KT
Sbjct: 2 PGVSVRDVAAQDFINAYA--------SFLQRQGKLEV-----------PGYVDIV-KTSS 41
Query: 72 AATKIPSSKALWWY 85
P W+Y
Sbjct: 42 GNEMPPQDAEGWFY 55
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase,
DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x
populus alba} PDB: 3n0g_A*
Length = 555
Score = 27.1 bits (59), Expect = 6.0
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 49 IFNYVSSTDNRITWLEFSNKTFGAATKIP----SSKALWWYCYHLVEDKTVYAIQSLFYH 104
I Y D LE + + + + WW L K +A L
Sbjct: 216 IEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGL-ATKLHFARDRLIES 274
Query: 105 YFFAYIVDF 113
+++A V F
Sbjct: 275 FYWAVGVAF 283
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Length = 263
Score = 26.5 bits (59), Expect = 7.3
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 178 PEAILNAQGGLLTDVHG-----VPYDYTDTVDPLN-----------KGGVIATAVKSEHD 221
N G + +DV+ + + V G+I TA S D
Sbjct: 127 SPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQGSNTD 186
Query: 222 YYISR 226
+ SR
Sbjct: 187 FV-SR 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.415
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,666,463
Number of extensions: 207348
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 26
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)