BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10094
(257 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242022637|ref|XP_002431746.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517061|gb|EEB19008.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 510
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/254 (87%), Positives = 228/254 (89%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 152 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 211
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAASKMGIE GQ+CVMIHSGSRGFG
Sbjct: 212 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAASKMGIESKGQICVMIHSGSRGFG 271
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACARINS EGQDYLKSMAA
Sbjct: 272 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACARINSPEGQDYLKSMAA 317
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFLCRQAFAKQFN+ PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 318 AANFAWVNRSSMTFLCRQAFAKQFNSCPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLV 377
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 378 HRKGSTRAFPPHHP 391
>gi|332375715|gb|AEE62998.1| unknown [Dendroctonus ponderosae]
Length = 506
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/254 (87%), Positives = 227/254 (89%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQVCVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQVCVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKSMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF+TTPDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFDTTPDDLDMHVIYDVSHNIAKVEEHIVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|307204121|gb|EFN82990.1| UPF0027 protein C22orf28-like protein [Harpegnathos saltator]
Length = 506
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/254 (86%), Positives = 227/254 (89%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMN+RDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 MFDHIPVGVGSKGIIPMNSRDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFN++PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|91093759|ref|XP_969671.1| PREDICTED: similar to GA22169-PA [Tribolium castaneum]
gi|270012976|gb|EFA09424.1| hypothetical protein TcasGA2_TC010635 [Tribolium castaneum]
Length = 506
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/254 (86%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQVCVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQVCVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARI+S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARISSQEGQDYLKSMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFN PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNMAPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|48112647|ref|XP_393151.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Apis mellifera]
Length = 506
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/254 (86%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|156544293|ref|XP_001607419.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Nasonia vitripennis]
Length = 506
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/254 (85%), Positives = 225/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML ADPSK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIY+K AASKMGIE+ GQVCVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYNKSAASKMGIEEKGQVCVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIE NDRQLACA INS+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIEVNDRQLACAHINSQEGQDYLKSMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFN +PDDLDMHVIYDVSHN+AK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNMSPDDLDMHVIYDVSHNVAKVEEHMVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|380030337|ref|XP_003698805.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
[Apis florea]
Length = 506
Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/254 (85%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF +PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|312374780|gb|EFR22263.1| hypothetical protein AND_15504 [Anopheles darlingi]
Length = 506
Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/254 (83%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|58389845|ref|XP_317316.2| AGAP008147-PA [Anopheles gambiae str. PEST]
gi|74802307|sp|Q7Q412.2|RTCB_ANOGA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|55237536|gb|EAA12412.2| AGAP008147-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMV+G+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|170037353|ref|XP_001846523.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|327488449|sp|B0WCT9.1|RTCB1_CULQU RecName: Full=tRNA-splicing ligase RtcB homolog 1
gi|167880432|gb|EDS43815.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 506
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|170072215|ref|XP_001870125.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|327488452|sp|B0XKF3.1|RTCB2_CULQU RecName: Full=tRNA-splicing ligase RtcB homolog 2
gi|167868461|gb|EDS31844.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 502
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|307182427|gb|EFN69663.1| UPF0027 protein C22orf28 [Camponotus floridanus]
Length = 506
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/254 (86%), Positives = 227/254 (89%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFN++PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|332028269|gb|EGI68316.1| UPF0027 protein C22orf28 [Acromyrmex echinatior]
Length = 506
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/254 (85%), Positives = 227/254 (89%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFN++PDDLDMHVIYDVSHNIAK EEH+V+GKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHIVEGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|321455578|gb|EFX66707.1| hypothetical protein DAPPUDRAFT_302483 [Daphnia pulex]
Length = 505
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/254 (81%), Positives = 220/254 (86%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IP+ A+DLEEALEMG+DWSLREGY WAEDKEHCEE+GRMLNADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPITAQDLEEALEMGVDWSLREGYAWAEDKEHCEEFGRMLNADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA+KMGIE GQVC+MIHSGSRGFG
Sbjct: 207 VSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAANKMGIEHKGQVCIMIHSGSRGFG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL M+KAMKRD I TNDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALNSMDKAMKRDKIVTNDRQLACARISSTEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR+SMTFLCRQAFAKQFN+TPDDLDMHVIYDVSHNIAK E+H VDGK KTLLV
Sbjct: 313 AANFAWVNRASMTFLCRQAFAKQFNSTPDDLDMHVIYDVSHNIAKVEQHTVDGKLKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|340711363|ref|XP_003394246.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Bombus terrestris]
Length = 506
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/254 (85%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VD+IYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDQIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRQSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|350402329|ref|XP_003486446.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Bombus impatiens]
Length = 506
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/254 (85%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VD+IYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDQIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRQSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|391335122|ref|XP_003741946.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Metaseiulus
occidentalis]
Length = 504
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/254 (81%), Positives = 219/254 (86%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRMLNADPSK
Sbjct: 146 LFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLNADPSK 205
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQIVDEI+DK ASKMGIE GQVCVMIHSGSRGFG
Sbjct: 206 VSSKAKKRGLPQLGTLGAGNHYAEIQIVDEIFDKQNASKMGIEHTGQVCVMIHSGSRGFG 265
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL++ME+AMKRD IE NDRQLACARI+S+EGQDYLKSM+A
Sbjct: 266 HQVAT--------------DALLEMERAMKRDRIEVNDRQLACARIHSQEGQDYLKSMSA 311
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAF K FN+TPDDLDM VIYDVSHNIAK EEH+VDGK KTLLV
Sbjct: 312 AANFAWVNRSSMTFLTRQAFGKMFNSTPDDLDMQVIYDVSHNIAKVEEHIVDGKMKTLLV 371
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 372 HRKGSTRAFPPHHP 385
>gi|383862089|ref|XP_003706516.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Megachile rotundata]
Length = 506
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/254 (85%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRDNIETNDRQLACA INS+EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHINSQEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF +PDDLDMHVIYDVSHNIAK EEHMV+GKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRMSPDDLDMHVIYDVSHNIAKIEEHMVEGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|157135852|ref|XP_001656701.1| hypothetical protein AaeL_AAEL003336 [Aedes aegypti]
gi|122095160|sp|Q17FP1.1|RTCB_AEDAE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|108881158|gb|EAT45383.1| AAEL003336-PA [Aedes aegypti]
Length = 506
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/254 (83%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKFAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+MAA
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRALPPHHP 387
>gi|195432826|ref|XP_002064417.1| GK23837 [Drosophila willistoni]
gi|194160502|gb|EDW75403.1| GK23837 [Drosophila willistoni]
Length = 506
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/254 (85%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK+K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKEKKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|193592101|ref|XP_001947227.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Acyrthosiphon pisum]
Length = 506
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/254 (81%), Positives = 217/254 (85%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY WAEDKEHCEE GRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNANDLEEALEMGMDWSLREGYAWAEDKEHCEENGRMLNADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRA+KRGLPQLGTLGAGNHYAEIQ+VDE+YDKWAA KMGIE+VGQVCVMIHSGSRGFG
Sbjct: 208 VSMRARKRGLPQLGTLGAGNHYAEIQVVDEVYDKWAAKKMGIENVGQVCVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL++MEKAM RD IE NDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALLEMEKAMARDKIEVNDRQLACARINSNEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF TPDDLDMHVIYDVSHNIAK E+H +DGK K LLV
Sbjct: 314 AANFAWVNRSSMTFLARQAFAKQFKLTPDDLDMHVIYDVSHNIAKMEQHYIDGKPKHLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPYHP 387
>gi|194879577|ref|XP_001974258.1| GG21180 [Drosophila erecta]
gi|190657445|gb|EDV54658.1| GG21180 [Drosophila erecta]
Length = 506
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|24585217|ref|NP_609965.1| CG9987 [Drosophila melanogaster]
gi|74948048|sp|Q9VIW7.1|RTCB_DROME RecName: Full=tRNA-splicing ligase RtcB homolog
gi|7298579|gb|AAF53797.1| CG9987 [Drosophila melanogaster]
gi|21430790|gb|AAM51073.1| SD15934p [Drosophila melanogaster]
gi|220960516|gb|ACL92794.1| CG9987-PA [synthetic construct]
Length = 506
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|195345091|ref|XP_002039109.1| GM17346 [Drosophila sechellia]
gi|194134239|gb|EDW55755.1| GM17346 [Drosophila sechellia]
Length = 506
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|125985006|ref|XP_001356267.1| GA22169 [Drosophila pseudoobscura pseudoobscura]
gi|195164656|ref|XP_002023162.1| GL21208 [Drosophila persimilis]
gi|54644589|gb|EAL33330.1| GA22169 [Drosophila pseudoobscura pseudoobscura]
gi|194105247|gb|EDW27290.1| GL21208 [Drosophila persimilis]
Length = 506
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|194762188|ref|XP_001963238.1| GF14042 [Drosophila ananassae]
gi|190616935|gb|EDV32459.1| GF14042 [Drosophila ananassae]
Length = 506
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|195484451|ref|XP_002090700.1| GE13253 [Drosophila yakuba]
gi|194176801|gb|EDW90412.1| GE13253 [Drosophila yakuba]
Length = 506
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|104531589|gb|ABF72888.1| CG9987-like [Belgica antarctica]
Length = 369
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/254 (83%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 114 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 173
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAASKMGIE+ GQVCVMIHSGSRGFG
Sbjct: 174 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAASKMGIEECGQVCVMIHSGSRGFG 233
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+M+KAMKRDNIE NDRQLACARI+S+EGQ+YLK+MAA
Sbjct: 234 HQVAT--------------DALVEMDKAMKRDNIEVNDRQLACARIHSEEGQNYLKAMAA 279
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHNIAK E H+VDGK+ LLV
Sbjct: 280 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNIAKVESHVVDGKEMKLLV 339
Query: 241 HRKVS----EPSHP 250
HRK + P HP
Sbjct: 340 HRKGATRAFPPHHP 353
>gi|195115184|ref|XP_002002144.1| GI14026 [Drosophila mojavensis]
gi|193912719|gb|EDW11586.1| GI14026 [Drosophila mojavensis]
Length = 506
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/254 (83%), Positives = 223/254 (87%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK F TTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFKTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|195580159|ref|XP_002079923.1| GD24205 [Drosophila simulans]
gi|194191932|gb|EDX05508.1| GD24205 [Drosophila simulans]
Length = 506
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/254 (84%), Positives = 223/254 (87%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKK GLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKGGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|195398107|ref|XP_002057666.1| GJ18257 [Drosophila virilis]
gi|194141320|gb|EDW57739.1| GJ18257 [Drosophila virilis]
Length = 506
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/254 (83%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML+ADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLSADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDG+++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGRERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|357620999|gb|EHJ72985.1| hypothetical protein KGM_11149 [Danaus plexippus]
Length = 506
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/254 (83%), Positives = 222/254 (87%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARD+EEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDMEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDK+ A KMG+E +GQVCVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKFGAGKMGLERIGQVCVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IE NDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDQIEVNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQF +PDDLDMHVIYDVSHNIAK EEH+VDGK KTLLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFKMSPDDLDMHVIYDVSHNIAKMEEHIVDGKIKTLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|405963891|gb|EKC29423.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 740
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/254 (79%), Positives = 215/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKGIIPM A++LEEALEMGMDWSLREGY WAEDKEHCEEYGRML ADP K
Sbjct: 148 MFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPGK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEIY+K+AA KMGIE GQVCVMIH GSRG G
Sbjct: 208 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNKFAAKKMGIECKGQVCVMIHCGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRDNI+ NDRQLACA+I S+EGQDYLK MAA
Sbjct: 268 HQVAT--------------DALVAMEKAMKRDNIKVNDRQLACAKIYSQEGQDYLKGMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F++TPDDLDM +IYDVSHNIAK EEH VDGKQKTLLV
Sbjct: 314 AANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVEEHFVDGKQKTLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 127/170 (74%), Gaps = 18/170 (10%)
Query: 87 IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQME 146
+++EIY+K+AA +MGIE QVCVMI+ GSRG GHQ AT DALV ME
Sbjct: 468 VMEEIYNKFAAKEMGIEFEEQVCVMINCGSRGLGHQEAT--------------DALVAME 513
Query: 147 KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNT 206
KA+KRDNI NDRQLACA+I EGQDYLK MA AAN+AWVNRSSMTFLCRQAFAK F+
Sbjct: 514 KALKRDNINVNDRQLACAKIYPPEGQDYLKGMATAANYAWVNRSSMTFLCRQAFAKMFDR 573
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHPGV 252
TP+DLDM +IYDVSHNIAK EEH DGKQKTLLVHRK S P HP +
Sbjct: 574 TPEDLDMFMIYDVSHNIAKVEEHFEDGKQKTLLVHRKGSTRAFPPHHPHI 623
>gi|195049922|ref|XP_001992790.1| GH13449 [Drosophila grimshawi]
gi|193899849|gb|EDV98715.1| GH13449 [Drosophila grimshawi]
Length = 506
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 222/254 (87%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPMNARDLEEALEMGMDWSLREGY WAEDKEHCEEYGRML+ADP K
Sbjct: 148 LFDHIPVGVGSKGVIPMNARDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLSADPGK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+MAA
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDQIETNDRQLACARINSVEGQNYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E H+VDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHIVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>gi|224095358|ref|XP_002199589.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Taeniopygia guttata]
Length = 505
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/257 (78%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEIY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|395538383|ref|XP_003771161.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Sarcophilus harrisii]
Length = 481
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 218/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 123 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 183 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 243 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 289 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 348
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 349 HRKGSTRAFPPHHPLIA 365
>gi|444511890|gb|ELV09964.1| tRNA-splicing ligase RtcB like protein [Tupaia chinensis]
Length = 1370
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 523 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 582
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 583 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 642
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 643 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAA 688
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 689 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 748
Query: 241 HRKVS----EPSHPGVS 253
HRK S P HP ++
Sbjct: 749 HRKGSTRAFPPHHPLIA 765
>gi|327272404|ref|XP_003220975.1| PREDICTED: UPF0027 protein C22orf28 homolog [Anolis carolinensis]
Length = 505
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 219/257 (85%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQ+CVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAAKKMGIDHKGQICVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARISSQEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|432964873|ref|XP_004087012.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Oryzias latipes]
Length = 505
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/254 (78%), Positives = 214/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRDNI NDRQLACARI S+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDNITVNDRQLACARITSQEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDGKQ+TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEEHIVDGKQRTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|387019439|gb|AFJ51837.1| tRNA-splicing ligase RtcB-like protein [Crotalus adamanteus]
Length = 505
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 218/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQ+CVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQICVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASQEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|74182485|dbj|BAE42866.1| unnamed protein product [Mus musculus]
Length = 505
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|149637947|ref|XP_001510104.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Ornithorhynchus
anatinus]
Length = 505
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 218/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|417402026|gb|JAA47874.1| Hypothetical protein [Desmodus rotundus]
Length = 505
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 218/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|344237443|gb|EGV93546.1| UPF0027 protein C22orf28-like [Cricetulus griseus]
Length = 440
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 82 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 141
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 142 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 201
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 202 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 247
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 248 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 307
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 308 HRKGSTRAFPPHHPLIA 324
>gi|48146467|emb|CAG33456.1| HSPC117 [Homo sapiens]
Length = 505
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|126339653|ref|XP_001366104.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Monodelphis
domestica]
Length = 505
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 218/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARISSPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|395819902|ref|XP_003783317.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Otolemur garnettii]
gi|197215673|gb|ACH53063.1| hypothetical protein [Otolemur garnettii]
Length = 505
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPTK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|62752829|ref|NP_001015631.1| tRNA-splicing ligase RtcB homolog [Bos taurus]
gi|75057839|sp|Q5E9T9.1|RTCB_BOVIN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|59858027|gb|AAX08848.1| hypothetical protein HSPC117 [Bos taurus]
gi|75775064|gb|AAI04499.1| Chromosome 22 open reading frame 28 ortholog [Bos taurus]
gi|296487405|tpg|DAA29518.1| TPA: hypothetical protein LOC525106 [Bos taurus]
Length = 505
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|351708233|gb|EHB11152.1| hypothetical protein GW7_07161 [Heterocephalus glaber]
Length = 505
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|281182876|ref|NP_001162246.1| tRNA-splicing ligase RtcB homolog [Papio anubis]
gi|302563711|ref|NP_001181487.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
gi|75076521|sp|Q4R6X4.1|RTCB_MACFA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|182639281|sp|A9CB42.1|RTCB_PAPAN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|67969603|dbj|BAE01150.1| unnamed protein product [Macaca fascicularis]
gi|159461553|gb|ABW96826.1| chromosome 22 open reading frame 28 (predicted) [Papio anubis]
gi|355563611|gb|EHH20173.1| hypothetical protein EGK_02972 [Macaca mulatta]
gi|355784931|gb|EHH65782.1| hypothetical protein EGM_02619 [Macaca fascicularis]
gi|380813570|gb|AFE78659.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
gi|383408245|gb|AFH27336.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
gi|384947556|gb|AFI37383.1| tRNA-splicing ligase RtcB homolog [Macaca mulatta]
Length = 505
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|118082912|ref|XP_416300.2| PREDICTED: tRNA-splicing ligase RtcB homolog [Gallus gallus]
gi|326912117|ref|XP_003202400.1| PREDICTED: UPF0027 protein C22orf28-like [Meleagris gallopavo]
Length = 505
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|190402300|gb|ACE77707.1| hypothetical protein [Sorex araneus]
Length = 505
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIVVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|71895823|ref|NP_001025674.1| tRNA-splicing ligase RtcB homolog [Xenopus (Silurana) tropicalis]
gi|82177958|sp|Q561P3.1|RTCB_XENTR RecName: Full=tRNA-splicing ligase RtcB homolog
gi|62531233|gb|AAH93459.1| MGC97634 protein [Xenopus (Silurana) tropicalis]
Length = 505
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 215/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAE+Q+VD+IYD++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|344266592|ref|XP_003405364.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Loxodonta africana]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASTEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKIEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|149743002|ref|XP_001499511.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Equus caballus]
gi|349602764|gb|AEP98803.1| UPF0027 protein C22orf28-like protein [Equus caballus]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|431905247|gb|ELK10292.1| hypothetical protein PAL_GLEAN10015436 [Pteropus alecto]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|297260920|ref|XP_002798386.1| PREDICTED: UPF0027 protein C22orf28 homolog isoform 2 [Macaca
mulatta]
Length = 430
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 120 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 180 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 240 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 286 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 345
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 346 HRKGSTRAFPPHHPLIA 362
>gi|348553088|ref|XP_003462359.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Cavia porcellus]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|172072661|ref|NP_001116458.1| tRNA-splicing ligase RtcB homolog [Sus scrofa]
gi|118573909|sp|Q19PY3.1|RTCB_PIG RecName: Full=tRNA-splicing ligase RtcB homolog
gi|106073298|gb|ABF81976.1| hypothetical protein [Sus scrofa]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|340371191|ref|XP_003384129.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Amphimedon
queenslandica]
Length = 508
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/254 (77%), Positives = 216/254 (85%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM ARDLE ALEMGMDW+LREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 150 LFDHIPVGVGSKGVIPMTARDLESALEMGMDWTLREGYGWAEDKEHCEEYGRMLQADPSK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V+EI+DK AA+KMGIE+ QVCVMIHSGSRG G
Sbjct: 210 VSQRAKKRGLPQLGTLGAGNHYAEIQVVEEIFDKHAAAKMGIEEKEQVCVMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRDNIE NDRQLACA+I SKEG++YLK MAA
Sbjct: 270 HQVAT--------------DALVEMEKAMKRDNIEVNDRQLACAKIKSKEGENYLKGMAA 315
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F +TPDDLDMH+IYDVSHNIAK E+H+V G++KTLLV
Sbjct: 316 AANYAWVNRSSMTFLTRQAFAKMFKSTPDDLDMHIIYDVSHNIAKVEQHIVSGREKTLLV 375
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 376 HRKGSTRAFPPHHP 389
>gi|7657015|ref|NP_055121.1| tRNA-splicing ligase RtcB homolog [Homo sapiens]
gi|114686058|ref|XP_001152688.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 2 [Pan
troglodytes]
gi|297708686|ref|XP_002831088.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 1 [Pongo
abelii]
gi|332218056|ref|XP_003258175.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 1 [Nomascus
leucogenys]
gi|397501751|ref|XP_003821539.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Pan paniscus]
gi|410965451|ref|XP_003989261.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Felis catus]
gi|426394247|ref|XP_004063412.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Gorilla gorilla
gorilla]
gi|74753486|sp|Q9Y3I0.1|RTCB_HUMAN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|4886425|emb|CAB43357.1| hypothetical protein [Homo sapiens]
gi|12804223|gb|AAH02970.1| Chromosome 22 open reading frame 28 [Homo sapiens]
gi|16307525|gb|AAH10308.1| Chromosome 22 open reading frame 28 [Homo sapiens]
gi|16876850|gb|AAH16707.1| Chromosome 22 open reading frame 28 [Homo sapiens]
gi|47678431|emb|CAG30336.1| dJ149A16.6 [Homo sapiens]
gi|109451142|emb|CAK54432.1| dJ149A16.6 [synthetic construct]
gi|109451720|emb|CAK54731.1| dJ149A16.6 [synthetic construct]
gi|119580425|gb|EAW60021.1| hypothetical protein HSPC117 [Homo sapiens]
gi|123980056|gb|ABM81857.1| chromosome 22 open reading frame 28 [synthetic construct]
gi|123994833|gb|ABM85018.1| chromosome 22 open reading frame 28 [synthetic construct]
gi|189065566|dbj|BAG35405.1| unnamed protein product [Homo sapiens]
gi|261857526|dbj|BAI45285.1| chromosome 22 open reading frame 28 [synthetic construct]
gi|410221954|gb|JAA08196.1| chromosome 22 open reading frame 28 [Pan troglodytes]
gi|410292766|gb|JAA24983.1| chromosome 22 open reading frame 28 [Pan troglodytes]
gi|410330975|gb|JAA34434.1| chromosome 22 open reading frame 28 [Pan troglodytes]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|426225197|ref|XP_004006754.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 1 [Ovis aries]
gi|426225199|ref|XP_004006755.1| PREDICTED: tRNA-splicing ligase RtcB homolog isoform 2 [Ovis aries]
Length = 505
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|354481935|ref|XP_003503156.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Cricetulus griseus]
Length = 514
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 156 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 215
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 216 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 275
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 276 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 321
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 322 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 381
Query: 241 HRKVS----EPSHPGVS 253
HRK S P HP ++
Sbjct: 382 HRKGSTRAFPPHHPLIA 398
>gi|184185481|gb|ACC68885.1| hypothetical protein [Rhinolophus ferrumequinum]
Length = 505
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|47085843|ref|NP_998268.1| tRNA-splicing ligase RtcB homolog [Danio rerio]
gi|82186036|sp|Q6NZS4.1|RTCB_DANRE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|42406383|gb|AAH65987.1| Zgc:76871 [Danio rerio]
Length = 505
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/254 (78%), Positives = 214/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVDG+QKTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|296191731|ref|XP_002743754.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Callithrix jacchus]
Length = 505
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDRKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|21703842|ref|NP_663397.1| tRNA-splicing ligase RtcB homolog [Mus musculus]
gi|81880226|sp|Q99LF4.1|RTCB_MOUSE RecName: Full=tRNA-splicing ligase RtcB homolog; AltName:
Full=Focal adhesion-associated protein; Short=FAAP
gi|81884655|sp|Q6AYT3.1|RTCB_RAT RecName: Full=tRNA-splicing ligase RtcB homolog; AltName: Full=p55
gi|13096991|gb|AAH03288.1| DNA segment, Chr 10, Wayne State University 52, expressed [Mus
musculus]
gi|37722161|gb|AAR02005.1| focal adhesion associated protein [Mus musculus]
gi|50926851|gb|AAH78924.1| P55 [Rattus norvegicus]
gi|74142478|dbj|BAE31991.1| unnamed protein product [Mus musculus]
gi|74181588|dbj|BAE30059.1| unnamed protein product [Mus musculus]
gi|74185421|dbj|BAE30183.1| unnamed protein product [Mus musculus]
gi|74207239|dbj|BAE30808.1| unnamed protein product [Mus musculus]
gi|74212476|dbj|BAE30981.1| unnamed protein product [Mus musculus]
gi|74219184|dbj|BAE26729.1| unnamed protein product [Mus musculus]
gi|74219227|dbj|BAE26747.1| unnamed protein product [Mus musculus]
gi|74219466|dbj|BAE29508.1| unnamed protein product [Mus musculus]
gi|74219639|dbj|BAE29587.1| unnamed protein product [Mus musculus]
gi|148689481|gb|EDL21428.1| DNA segment, Chr 10, Wayne State University 52, expressed [Mus
musculus]
gi|149067385|gb|EDM17118.1| P55 [Rattus norvegicus]
Length = 505
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|170649615|gb|ACB21203.1| hypothetical protein [Callicebus moloch]
Length = 505
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|291389936|ref|XP_002711465.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
Length = 505
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|387916116|gb|AFK11667.1| tRNA-splicing ligase RtcB-like protein [Callorhinchus milii]
Length = 505
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEI+D++AA KMGI+ GQVCVMIH GSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDEYAARKMGIDHKGQVCVMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARINS+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARINSQEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A ++AWVNRSSMTFL RQAFAK F TTPDDLDMH+IYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 313 AGDYAWVNRSSMTFLTRQAFAKVFGTTPDDLDMHMIYDVSHNIAKVEEHVVDGKQKTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|12652799|gb|AAH00151.1| Chromosome 22 open reading frame 28 [Homo sapiens]
Length = 505
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDD D+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDFDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|73969943|ref|XP_531754.2| PREDICTED: tRNA-splicing ligase RtcB homolog [Canis lupus
familiaris]
gi|301772312|ref|XP_002921575.1| PREDICTED: UPF0027 protein C22orf28-like [Ailuropoda melanoleuca]
gi|281342984|gb|EFB18568.1| hypothetical protein PANDA_010474 [Ailuropoda melanoleuca]
gi|355734532|gb|AES11375.1| hypothetical protein [Mustela putorius furo]
Length = 505
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM+A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|348522556|ref|XP_003448790.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Oreochromis
niloticus]
Length = 505
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 212/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARITSPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDGKQ+TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEEHIVDGKQRTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|194387596|dbj|BAG60162.1| unnamed protein product [Homo sapiens]
Length = 430
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 120 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEI++VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 180 VSARAKKRGLPQLGTLGAGNHYAEIRVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 240 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 286 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 345
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 346 HRKGSTRAFPPHHPLIA 362
>gi|74207540|dbj|BAE40021.1| unnamed protein product [Mus musculus]
Length = 505
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMN +DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNVKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|46485379|ref|NP_997497.1| tRNA-splicing ligase RtcB homolog [Rattus norvegicus]
gi|45861501|gb|AAS78621.1| focal adhesion associated protein [Rattus norvegicus]
Length = 505
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNCAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|410925908|ref|XP_003976421.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Takifugu rubripes]
Length = 504
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/254 (78%), Positives = 212/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 146 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 205
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 206 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 265
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 266 HQVAT--------------DALVAMEKAMKRDKICVNDRQLACARITSPEGQDYLKGMAA 311
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 312 AGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEEHVVDGKQKTLLV 371
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 372 HRKGSTRAFPPHHP 385
>gi|74198421|dbj|BAE39694.1| unnamed protein product [Mus musculus]
Length = 505
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+I MNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVITMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|291234305|ref|XP_002737089.1| PREDICTED: hypothetical protein, partial [Saccoglossus kowalevskii]
Length = 454
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 214/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM ARDLEEALEMGMDWSLREGY WAEDKEHCEE+GRML ADP+K
Sbjct: 149 MFDHIPVGVGSKGVIPMTARDLEEALEMGMDWSLREGYAWAEDKEHCEEFGRMLQADPNK 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEIYD A+ KMGI+ VGQVCVMIHSGSRG G
Sbjct: 209 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDSHASKKMGIDFVGQVCVMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IE NDRQLACA+I S+EGQDYLK MA
Sbjct: 269 HQVAT--------------DALVQMEKAMKRDKIEVNDRQLACAKITSQEGQDYLKGMAG 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+VNR+SM FL RQA AK FNTTPDDLDMH+IYDVSHNIAK E+H++DGK+KTLLV
Sbjct: 315 AANYAFVNRTSMCFLTRQAVAKVFNTTPDDLDMHMIYDVSHNIAKIEQHIIDGKEKTLLV 374
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 375 HRKGSTRAFPPHHP 388
>gi|148236109|ref|NP_001090369.1| uncharacterized protein LOC779280 [Xenopus laevis]
gi|116063456|gb|AAI23249.1| MGC154502 protein [Xenopus laevis]
Length = 505
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/254 (77%), Positives = 213/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAE+Q+VDEIYD++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEVQVVDEIYDEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARISSDEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K FNT PDDLDMHVIYDVSHNIAK E+H+V+GK+ TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFNTPPDDLDMHVIYDVSHNIAKVEQHVVEGKEMTLLV 372
Query: 241 HRKVS----EPSHP 250
HRK + P HP
Sbjct: 373 HRKGATRAFPPHHP 386
>gi|74208075|dbj|BAE29145.1| unnamed protein product [Mus musculus]
Length = 445
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/257 (77%), Positives = 216/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+D SLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDRSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|390334885|ref|XP_793085.3| PREDICTED: tRNA-splicing ligase RtcB homolog [Strongylocentrotus
purpuratus]
Length = 508
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/254 (80%), Positives = 218/254 (85%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A++LEEALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 150 LFDHIPVGVGSKGVIPMGAKELEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPNK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ AA KMGI+ GQVC+MIHSGSRG G
Sbjct: 210 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDHAAKKMGIDRKGQVCLMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD I+ NDRQLACARI+S+EGQDYLK+MAA
Sbjct: 270 HQVAT--------------DALVQMEKAMKRDKIQVNDRQLACARIHSQEGQDYLKAMAA 315
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHNIAK EEHMVDG QKTLLV
Sbjct: 316 AANYAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNIAKVEEHMVDGVQKTLLV 375
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 376 HRKGSTRAFPPHHP 389
>gi|106073274|gb|ABF81975.1| hypothetical protein [Sus scrofa]
Length = 505
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/257 (76%), Positives = 214/257 (83%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLR GY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLRGGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNI K E+H+VD K++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLNRQAFAKVFNTTPDDLDLHVIYDVSHNIVKVEQHVVDRKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|303272537|ref|XP_003055630.1| predicted protein [Micromonas pusilla CCMP1545]
gi|327488438|sp|C1MI97.1|RTCB_MICPC RecName: Full=tRNA-splicing ligase RtcB homolog
gi|226463604|gb|EEH60882.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 507
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 211/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP +A LE ALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 149 LFDHIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGYAWAEDKEHCEEYGRMLTADPNK 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEI+D AA KMG++ VGQV VMIHSGSRG G
Sbjct: 209 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDAHAAEKMGVDAVGQVMVMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL +ME+AM RD IETNDRQLACARINS EGQ+YL +M+
Sbjct: 269 HQVAT--------------DALTEMERAMARDGIETNDRQLACARINSTEGQNYLSAMSC 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F++TPDDLDMHV+YDVSHNIAK EEHMVDGK KTLLV
Sbjct: 315 AANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMHVVYDVSHNIAKIEEHMVDGKLKTLLV 374
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 375 HRKGSTRAFPPHHP 388
>gi|156404055|ref|XP_001640223.1| predicted protein [Nematostella vectensis]
gi|327488441|sp|A7RKF6.1|RTCB_NEMVE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|156227356|gb|EDO48160.1| predicted protein [Nematostella vectensis]
Length = 505
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 211/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLE+ALEMG+DWSLREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEDALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADSAK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSAKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEFAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD IE NDRQLACA I S EGQDYLK MA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIEVNDRQLACAHIKSPEGQDYLKGMAG 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK FN+TPDDLDMH+IYDVSHNIAK EEH +DG+Q+ LLV
Sbjct: 313 AANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAKVEEHFLDGRQRQLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|326428595|gb|EGD74165.1| hypothetical protein PTSG_06172 [Salpingoeca sp. ATCC 50818]
Length = 519
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/254 (76%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG++PM +DLEEALEMGMDWSLREGY W EDKEHCEEYGRML AD SK
Sbjct: 161 LFDHIPVGVGSKGVVPMTVQDLEEALEMGMDWSLREGYAWPEDKEHCEEYGRMLQADASK 220
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK AA+KMGI GQVCVMIHSGSRG G
Sbjct: 221 VSTRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKHAANKMGINRTGQVCVMIHSGSRGLG 280
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL M AMKRD IE NDRQLACARI S+EGQ+YLKSMAA
Sbjct: 281 HQVAT--------------DALTAMANAMKRDGIEVNDRQLACARIGSEEGQNYLKSMAA 326
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRS+MTFL RQAFAKQF TTP+DLDMHVIYDVSHNIAK E+H VDGK + LLV
Sbjct: 327 AANYAWVNRSTMTFLARQAFAKQFKTTPEDLDMHVIYDVSHNIAKVEKHWVDGKLRNLLV 386
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 387 HRKGSTRAFPPHHP 400
>gi|167522174|ref|XP_001745425.1| hypothetical protein [Monosiga brevicollis MX1]
gi|327488440|sp|A9UXG6.1|RTCB_MONBE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|163776383|gb|EDQ90003.1| predicted protein [Monosiga brevicollis MX1]
Length = 497
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/254 (78%), Positives = 218/254 (85%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPMNA+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML AD SK
Sbjct: 139 LFDHIPVGVGSKGVIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADASK 198
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK AA+KMGI Q+CVMIHSGSRG G
Sbjct: 199 VSARAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKEAAAKMGINKKNQICVMIHSGSRGLG 258
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD IE NDRQLACARI+S+EGQ+YLK+MAA
Sbjct: 259 HQVAT--------------DALVAMEKAMKRDGIEVNDRQLACARIHSEEGQNYLKAMAA 304
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRS+MTFLCRQAFAKQFNTTP++LDMHVIYDVSHNIAKTE HMV+G ++TLLV
Sbjct: 305 AANYAWVNRSTMTFLCRQAFAKQFNTTPEELDMHVIYDVSHNIAKTERHMVNGTERTLLV 364
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 365 HRKGSTRAFPPHHP 378
>gi|198418617|ref|XP_002130028.1| PREDICTED: similar to UPF0027 protein C22orf28 [Ciona intestinalis]
Length = 504
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/254 (76%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML A+PSK
Sbjct: 146 LFDHIPVGVGSKGVIPMGAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQAEPSK 205
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI+DK+AA+KMG+E GQVCVMIH GSRG G
Sbjct: 206 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFDKYAANKMGLEYKGQVCVMIHCGSRGLG 265
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAM RDNI NDRQLACA I S+EGQDYLK M A
Sbjct: 266 HQVAT--------------DALVAMEKAMNRDNIIVNDRQLACAHIGSQEGQDYLKGMCA 311
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF K F +PDDLDM +IYDVSHNIAK EEHMVDGKQK LLV
Sbjct: 312 AGNYAWVNRSSMTFLTRQAFGKVFKCSPDDLDMQMIYDVSHNIAKIEEHMVDGKQKRLLV 371
Query: 241 HRKVS----EPSHP 250
HRK + P HP
Sbjct: 372 HRKGATRAFPPHHP 385
>gi|6841456|gb|AAF29081.1|AF161466_1 HSPC117 [Homo sapiens]
Length = 505
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/257 (75%), Positives = 213/257 (82%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLA + S E QDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLALSSNASPEVQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|195998129|ref|XP_002108933.1| hypothetical protein TRIADDRAFT_18395 [Trichoplax adhaerens]
gi|327488445|sp|B3RID0.1|RTCB_TRIAD RecName: Full=tRNA-splicing ligase RtcB homolog
gi|190589709|gb|EDV29731.1| hypothetical protein TRIADDRAFT_18395 [Trichoplax adhaerens]
Length = 510
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIPMNARDL+EALEMGMDWSLREGY WAEDKEHCEEYGRML AD +K
Sbjct: 152 LFDHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADSNK 211
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S+RAKKRGLPQLGTLGAGNHYAEIQ VDEIYD +AA MGI GQ+C+M+HSGSRG G
Sbjct: 212 ISLRAKKRGLPQLGTLGAGNHYAEIQAVDEIYDSFAAKSMGINRRGQICIMVHSGSRGLG 271
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL MEKAM +D I NDRQLACARI S EGQ+YLK MAA
Sbjct: 272 HQVAT--------------DALFNMEKAMIKDGINVNDRQLACARIASDEGQNYLKGMAA 317
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F+TTPDDLDMHVIYDVSHNIAK EEH+V+GK TLLV
Sbjct: 318 AANYAWVNRSSMTFLARQAFAKCFHTTPDDLDMHVIYDVSHNIAKIEEHVVNGKLSTLLV 377
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 378 HRKGSTRAFPPHHP 391
>gi|393911595|gb|EJD76380.1| hypothetical protein LOAG_16672 [Loa loa]
Length = 505
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 207/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIP+ A EE LEMGMDW+LREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFDHIPVGVGSKGIIPIGALQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADAAK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+VDEIYD++AAS+MGI+ +GQVCVMIH GSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYGEVQVVDEIYDEYAASRMGIDRLGQVCVMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV MEKAMKRDNI NDRQLACARINS EGQDYLK MAA
Sbjct: 267 HQVAT--------------DSLVVMEKAMKRDNIIVNDRQLACARINSVEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK FNT+PDDLDMHVIYDVSHNIAK EEH+VDG+ K L V
Sbjct: 313 AANFAWVNRSCMTFCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLVDGRPKQLCV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|170593115|ref|XP_001901310.1| Hypothetical UPF0027 protein F16A11.2 in chromosome I [Brugia
malayi]
gi|327488436|sp|A8QC60.1|RTCB_BRUMA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|158591377|gb|EDP29990.1| Hypothetical UPF0027 protein F16A11.2 in chromosome I, putative
[Brugia malayi]
Length = 505
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFDHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADAAK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q++DEIYD++AAS+MGI+ +GQVC+MIH GSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYGEVQVIDEIYDEYAASRMGIDRLGQVCIMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV MEKAMKRDNI NDRQLACARINS EGQDYLK MAA
Sbjct: 267 HQVAT--------------DSLVVMEKAMKRDNIIVNDRQLACARINSMEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK FNT+PDDLDMHVIYDVSHNIAK EEH+++G+ K L V
Sbjct: 313 AANFAWVNRSCMTFCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLINGRPKQLCV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|320168093|gb|EFW44992.1| HSPC117 [Capsaspora owczarzaki ATCC 30864]
Length = 516
Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 206/254 (81%), Gaps = 21/254 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM +LEEALEMGMDWSLREGY WAEDKEHCEEYGRML A+P+
Sbjct: 161 LFDHIPVGVGSKGVIPMTMHNLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQANPAM 220
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY EIQ+VDEIYD AA KMGI+ GQVC+M+HSGSRG G
Sbjct: 221 VSQRAKKRGLPQLGTLGAGNHYCEIQVVDEIYDAHAARKMGIDQKGQVCIMVHSGSRGLG 280
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV MEKAM+RD IE NDRQLACARI SKEGQ YL+ MAA
Sbjct: 281 HQVAT--------------DSLVSMEKAMRRDGIEVNDRQLACARIQSKEGQHYLQGMAA 326
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK FN+TPDDLDMHVIYDVSHNIAK EEHMVD TLLV
Sbjct: 327 AANYAWVNRSSMTFLTRQAFAKIFNSTPDDLDMHVIYDVSHNIAKVEEHMVD---VTLLV 383
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 384 HRKGSTRAFPPHHP 397
>gi|7688673|gb|AAF67477.1|AF155658_1 putative 55 kDa protein [Homo sapiens]
Length = 505
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/257 (75%), Positives = 210/257 (81%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEAL G LREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALGDGGGLVLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S E QDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEVQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>gi|255079850|ref|XP_002503505.1| predicted protein [Micromonas sp. RCC299]
gi|327488439|sp|C1E9Y5.1|RTCB_MICSR RecName: Full=tRNA-splicing ligase RtcB homolog
gi|226518772|gb|ACO64763.1| predicted protein [Micromonas sp. RCC299]
Length = 513
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/254 (74%), Positives = 209/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEHCEEYGRMLNADP+K
Sbjct: 155 LFDHIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLNADPNK 214
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEI+DK AA KMGIE +GQV VMIHSGSRG G
Sbjct: 215 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLG 274
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL +ME+AM RD I NDRQLACA+I+S EGQ+YL +M+
Sbjct: 275 HQVAT--------------DALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSC 320
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F+ TPDDLDMHV+YDVSHNIAK EEH+VDG+ KTLLV
Sbjct: 321 AANYAWVNRSSMTFLCRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLV 380
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 381 HRKGSTRAFPPHHP 394
>gi|402593909|gb|EJW87836.1| hypothetical protein WUBG_01253 [Wuchereria bancrofti]
Length = 505
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFNHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADAAK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q++DEIYD++AAS+MGI+ +GQVC+MIH GSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYGEVQVIDEIYDEYAASRMGIDRLGQVCIMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV MEKAMKRD+I NDRQLACARINS EGQDYLK MAA
Sbjct: 267 HQVAT--------------DSLVVMEKAMKRDSIIVNDRQLACARINSMEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK FNT+PDDLDMHVIYDVSHNIAK EEH+++G+ K L V
Sbjct: 313 AANFAWVNRSCMTFCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLINGRPKQLCV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|260814944|ref|XP_002602173.1| hypothetical protein BRAFLDRAFT_216547 [Branchiostoma floridae]
gi|327488435|sp|C3YN79.1|RTCB_BRAFL RecName: Full=tRNA-splicing ligase RtcB homolog
gi|229287480|gb|EEN58185.1| hypothetical protein BRAFLDRAFT_216547 [Branchiostoma floridae]
Length = 507
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 206/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM ARDLEEALEMG+DWSLREGY WAEDKEHCEEYGRMLNAD S
Sbjct: 149 MFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLNADQSA 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V +AKKRGLPQLGTLGAGNHYAEIQ+VDEI+D +A+ +MGI+ GQV VMIHSGSRGFG
Sbjct: 209 VGSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDDYASQRMGIDHKGQVVVMIHSGSRGFG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD + TNDRQLACARI+S EGQ+YLK MA
Sbjct: 269 HQVAT--------------DALVAMEKAMKRDKVLTNDRQLACARIHSPEGQEYLKGMAC 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDM +IYDVSHNIAK EEH+ TLLV
Sbjct: 315 AANFAWVNRSSMTFLSRQAFAKVFNTTPDDLDMQLIYDVSHNIAKMEEHISFQLSTTLLV 374
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 375 HRKGSTRAFPPHHP 388
>gi|66816787|ref|XP_642393.1| UPF0027 family protein [Dictyostelium discoideum AX4]
gi|74856587|sp|Q54Y09.1|RTCB_DICDI RecName: Full=tRNA-splicing ligase RtcB homolog
gi|60470433|gb|EAL68413.1| UPF0027 family protein [Dictyostelium discoideum AX4]
Length = 508
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 206/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEHCEEYGRMLNADP+K
Sbjct: 150 LFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGRMLNADPTK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+VDEIYDK AA+KMGI+ GQ+C+MIHSGSRG G
Sbjct: 210 VSERAKKRGLPQLGTLGAGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L MEKAM RD+I ND+QLAC+RINS EGQDYL MAA
Sbjct: 270 HQVAT--------------DSLTLMEKAMARDHIHLNDKQLACSRINSTEGQDYLSGMAA 315
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR SMTFL RQAFAK FN+TPDDLDMHVIYDVSHNIAK EEH V+G+ K LLV
Sbjct: 316 AANFAWVNRQSMTFLTRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEEHNVNGRPKKLLV 375
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 376 HRKGATRAFAPHHP 389
>gi|159482936|ref|XP_001699521.1| predicted protein [Chlamydomonas reinhardtii]
gi|327488437|sp|A8JC00.1|RTCB_CHLRE RecName: Full=tRNA-splicing ligase RtcB homolog
gi|158272788|gb|EDO98584.1| predicted protein [Chlamydomonas reinhardtii]
Length = 476
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 206/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEHCEEYGRMLNADP
Sbjct: 118 LFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGRMLNADPRY 177
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAE+Q+VDE+YD AA +MGI+ GQV VMIHSGSRG G
Sbjct: 178 VSSRAKKRGLPQMGTLGAGNHYAEVQVVDEVYDAVAARRMGIDTPGQVVVMIHSGSRGLG 237
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME+AM RD I TNDRQLACARINS+EGQ YLK+M+
Sbjct: 238 HQVAT--------------DALVAMERAMARDGIITNDRQLACARINSEEGQAYLKAMSC 283
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F +TPDDLDMHV+YDVSHNIAK E+H VDG+ + LLV
Sbjct: 284 AANYAWVNRSSMTFLARQAFAKIFKSTPDDLDMHVVYDVSHNIAKVEQHCVDGQHRRLLV 343
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 344 HRKGSTRAFPPHHP 357
>gi|221131263|ref|XP_002156922.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Hydra magnipapillata]
Length = 505
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/254 (76%), Positives = 209/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPM A DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML ADPSK
Sbjct: 147 LFDHIPVGVGSKGIIPMGANDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+V+EI+D AA +MG++ GQVCVMIH GSRG G
Sbjct: 207 VSTKAKKRGLPQLGTLGAGNHYAEIQVVEEIFDTHAAKRMGLDHCGQVCVMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME+AM RD I NDRQLACARINS EGQDYL +MAA
Sbjct: 267 HQVAT--------------DALVAMERAMTRDKIIVNDRQLACARINSTEGQDYLSAMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAF K FN+TPDDLDMHVIYDVSHNIAK EEHMV+G KTLLV
Sbjct: 313 AANYAWVNRSSMTFLTRQAFGKVFNSTPDDLDMHVIYDVSHNIAKIEEHMVNGCLKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 373 HRKGATRAFPPHHP 386
>gi|324504186|gb|ADY41808.1| Unknown [Ascaris suum]
Length = 505
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/254 (73%), Positives = 203/254 (79%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+VDEI+D +AASKMGI+ VGQVCVMIH GSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYGEVQVVDEIFDTYAASKMGIDRVGQVCVMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DSLVAMEKAMKRDAIGVNDRQLACARITSVEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK F+ +PDDLDMHVIYDVSHNIAK EEH+++ K + L V
Sbjct: 313 AANFAWVNRSCMTFCARQAFAKVFSMSPDDLDMHVIYDVSHNIAKMEEHLINDKPRQLCV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>gi|358336819|dbj|GAA55270.1| tRNA-splicing ligase RtcB homolog [Clonorchis sinensis]
Length = 688
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 215/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM+A+ LEEALEMGMDWSLR+GY+WA+DKEHCEEYGRML ADPSK
Sbjct: 346 LFDHIPVGVGSKGVIPMDAQALEEALEMGMDWSLRQGYVWADDKEHCEEYGRMLQADPSK 405
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V++I+DK AA+KMGI+ + QV +MIH GSRG G
Sbjct: 406 VSSRAKKRGLPQLGTLGAGNHYAEIQVVEQIFDKHAATKMGIDQLNQVVLMIHCGSRGMG 465
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME+AMKRD IE NDRQLACAR++S+EGQDYLK+MAA
Sbjct: 466 HQVAT--------------DALVAMERAMKRDKIEVNDRQLACARVDSQEGQDYLKAMAA 511
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F +TPDDLDMH+IYDVSHNIAK EEH VDGK KTLLV
Sbjct: 512 AANYAWVNRSSMTFLARQAFAKIFQSTPDDLDMHIIYDVSHNIAKVEEHWVDGKIKTLLV 571
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 572 HRKGSTRAFPPHHP 585
>gi|308808632|ref|XP_003081626.1| Zgc:76871 (ISS) [Ostreococcus tauri]
gi|122157076|sp|Q00ZY2.1|RTCB_OSTTA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|116060091|emb|CAL56150.1| Zgc:76871 (ISS) [Ostreococcus tauri]
Length = 515
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/254 (74%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP LE LEMGMDWSLREGY WAEDKEH EEYGRMLNADPSK
Sbjct: 157 LFDHIPVGVGSRGIIPTTPAALEAVLEMGMDWSLREGYAWAEDKEHTEEYGRMLNADPSK 216
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEIYD++AA KMGI+ VGQVC+MIHSGSRG G
Sbjct: 217 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGLG 276
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L ME+AM+RD IE NDRQLACARI+S+EGQDYL +MA
Sbjct: 277 HQVAT--------------DSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMAC 322
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F PD+LDMHV+YDVSHNIAK EEHMVDG+ KTLLV
Sbjct: 323 AANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLV 382
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 383 HRKGSTRAFPPHHP 396
>gi|339256438|ref|XP_003370408.1| replication factor C subunit [Trichinella spiralis]
gi|316964983|gb|EFV49850.1| replication factor C subunit [Trichinella spiralis]
Length = 392
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 204/254 (80%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVGS+GIIP+N RD EE LEMGMDW+LREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 146 LFDFIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLEADPAK 205
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+V+EIYDK AA +MGI+ GQVCVMIH GSRG G
Sbjct: 206 VSTRAKKRGLPQLGTLGAGNHYGEVQVVEEIYDKHAARRMGIDRKGQVCVMIHCGSRGLG 265
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+M+KAM R+NI+ NDRQLACA + SKEGQ+YLK MAA
Sbjct: 266 HQVAT--------------DALVEMDKAMLRNNIKLNDRQLACAPLKSKEGQNYLKGMAA 311
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK F TPDDLDM V+YDVSHNIAK EEHMV+GK KTL V
Sbjct: 312 AANFAWVNRSCMTFCARQAFAKIFQCTPDDLDMQVVYDVSHNIAKIEEHMVEGKLKTLCV 371
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 372 HRKGSTRAFPPHHP 385
>gi|428184373|gb|EKX53228.1| 3'-phosphate RNA ligase RtcB [Guillardia theta CCMP2712]
Length = 497
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 209/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP N+ DLEEALEMG+DWSLREGY W EDKEHCEEYGRML ADP K
Sbjct: 152 VFDHIPVGVGSQGIIPTNSNDLEEALEMGIDWSLREGYSWPEDKEHCEEYGRMLQADPRK 211
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI+D AAS+MGIE+ GQV VMIHSGSRG G
Sbjct: 212 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIFDARAASQMGIEEKGQVVVMIHSGSRGLG 271
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL M+KAM RDNI TNDRQL+CARI+S+EGQDYL +MAA
Sbjct: 272 HQVAT--------------DALTAMDKAMDRDNIRTNDRQLSCARIDSQEGQDYLAAMAA 317
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F +TPDDLDMH+IYDVSHNIAK EEHMVDG K LLV
Sbjct: 318 AANYAWVNRSSMTFLVRQAFAKVFQSTPDDLDMHLIYDVSHNIAKVEEHMVDGNIKKLLV 377
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 378 HRKGSTRAFPPHHP 391
>gi|145351193|ref|XP_001419969.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|327488442|sp|A4S3S3.1|RTCB_OSTLU RecName: Full=tRNA-splicing ligase RtcB homolog
gi|144580202|gb|ABO98262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 514
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 210/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEH EEYGRMLNADPSK
Sbjct: 156 LFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGYAWAEDKEHTEEYGRMLNADPSK 215
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEIYD++AA KMGI+ VGQ+C+MIHSGSRG G
Sbjct: 216 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQICIMIHSGSRGLG 275
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L ME+AM+RD IE NDRQLACA+I+S+EGQDYL +MA
Sbjct: 276 HQVAT--------------DSLTAMERAMERDGIEVNDRQLACAKISSQEGQDYLAAMAC 321
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F PD+LDMHV+YDVSHNIAK EEH+VDG+ KTLLV
Sbjct: 322 AANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHIVDGEMKTLLV 381
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 382 HRKGSTRAFPPHHP 395
>gi|432094359|gb|ELK25936.1| tRNA-splicing ligase RtcB like protein [Myotis davidii]
Length = 493
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/257 (73%), Positives = 206/257 (80%), Gaps = 30/257 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AW AFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAW------------AFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 360
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 361 HRKGSTRAFPPHHPLIA 377
>gi|449015886|dbj|BAM79288.1| conserved unknown protein RtcB [Cyanidioschyzon merolae strain 10D]
Length = 506
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/254 (74%), Positives = 210/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDH+PVGVGS+GIIP +RDLEEAL GMDWSLREGY WAEDKEHCEEYGRML A+P K
Sbjct: 148 LFDHLPVGVGSRGIIPTTSRDLEEALASGMDWSLREGYSWAEDKEHCEEYGRMLRANPEK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQIVDEI+D+ AA KMGIE++ QV VMIHSGSRG G
Sbjct: 208 VSARAKKRGLPQLGTLGAGNHYAEIQIVDEIFDQAAAKKMGIEELCQVVVMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+ME+AM RD I+ NDRQLACARINS+EGQDY+ +MAA
Sbjct: 268 HQVAT--------------DALVEMERAMNRDRIQVNDRQLACARINSREGQDYIAAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FN++PDDLDMHV+YDVSHNIAK EEH+VDG+ LLV
Sbjct: 314 AANFAWVNRSSMTFLARQAFAKTFNSSPDDLDMHVVYDVSHNIAKFEEHLVDGRPVELLV 373
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 374 HRKGATRAFPPYHP 387
>gi|313232095|emb|CBY09206.1| unnamed protein product [Oikopleura dioica]
Length = 507
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 211/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G+IPM +DL+EALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 149 LFDHIPVGVGSRGVIPMKPKDLDEALEMGLDWSLREGYAWAEDKEHCEEYGRMLGADPNK 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEI++K AA KMGI+ VGQV +MIHSGSRGFG
Sbjct: 209 VSKKAKKRGLPQLGTLGAGNHYAEIQVVDEIFNKEAADKMGIDRVGQVVIMIHSGSRGFG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL+ MEKAMKRD I ND+QLACARI+S EGQ+YL +MA
Sbjct: 269 HQVAT--------------DALLDMEKAMKRDGIRLNDKQLACARIHSPEGQNYLAAMAC 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNRS+MTFL RQAF K FNTT DDLDMH+IYDVSHNIAK EEH+VDGK KTLLV
Sbjct: 315 AANFAFVNRSTMTFLVRQAFGKIFNTTADDLDMHLIYDVSHNIAKVEEHVVDGKTKTLLV 374
Query: 241 HRKVS----EPSHP 250
HRK + P HP
Sbjct: 375 HRKGATRAFPPHHP 388
>gi|328866838|gb|EGG15221.1| UPF0027 family protein [Dictyostelium fasciculatum]
Length = 504
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 205/254 (80%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM ++ L+ ALE+G+DWSLREGY W EDKEHCEEYGRMLNADPSK
Sbjct: 146 LFDHIPVGVGSKGVIPMGSKALDAALELGLDWSLREGYAWVEDKEHCEEYGRMLNADPSK 205
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+VDEIYDK AA KMG++ +GQVCVMIHSGSRG G
Sbjct: 206 VSERAKKRGLPQLGTLGAGNHYLEVQVVDEIYDKGAAKKMGVDRLGQVCVMIHSGSRGLG 265
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L MEKAM RD I ND+QLACA I+S+EG+DYL MAA
Sbjct: 266 HQVAT--------------DSLTSMEKAMARDKIHLNDKQLACAHISSQEGKDYLAGMAA 311
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR SMTFL RQ FAK FN +PDDLDMHVIYDVSHNIAK EEHMVDG+ K LLV
Sbjct: 312 AANFAWVNRQSMTFLARQTFAKAFNASPDDLDMHVIYDVSHNIAKFEEHMVDGRPKKLLV 371
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 372 HRKGATRAFGPHHP 385
>gi|412992783|emb|CCO18763.1| hypothetical protein Bathy11g01950 [Bathycoccus prasinos]
Length = 530
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/254 (72%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVG KGIIP++A+ L+ ALEMG+DW +REGY W EDKE CEE GRMLNADPSK
Sbjct: 172 LFDHIPVGVGGKGIIPVDAKTLDTALEMGIDWCVREGYAWIEDKERCEENGRMLNADPSK 231
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEIYD++AA KMGI+ +GQV VMIHSGSRG G
Sbjct: 232 VSQRAKKRGLPQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLG 291
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAM +D +E NDRQLACARINS+EG+DYL +MA
Sbjct: 292 HQVAT--------------DALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMAC 337
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNR SMTFLCRQAFAK FN T + LDMHV+YDVSHNIAK EEH+VDG+ KTLLV
Sbjct: 338 AANYAWVNRQSMTFLCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLV 397
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 398 HRKGSTRAFPPHHP 411
>gi|302843252|ref|XP_002953168.1| hypothetical protein VOLCADRAFT_63305 [Volvox carteri f.
nagariensis]
gi|300261555|gb|EFJ45767.1| hypothetical protein VOLCADRAFT_63305 [Volvox carteri f.
nagariensis]
Length = 503
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/254 (72%), Positives = 202/254 (79%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEHCEEYGRMLNADP
Sbjct: 145 LFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGRMLNADPRH 204
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAE+Q+VDE+ D AA +MGI+ GQV VMIHSGSRG G
Sbjct: 205 VSSRAKKRGLPQMGTLGAGNHYAEVQVVDEVLDPVAARRMGIDTKGQVVVMIHSGSRGLG 264
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME+AM RD I TNDRQLACARI S EGQ YL +MA
Sbjct: 265 HQVAT--------------DALVAMERAMARDGIVTNDRQLACARIGSAEGQSYLAAMAC 310
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F +TPDDLDMHV+YDVSHNIAK E+H+VDGK LLV
Sbjct: 311 AANYAWVNRSSMTFLARQAFAKLFKSTPDDLDMHVVYDVSHNIAKVEQHLVDGKYMRLLV 370
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 371 HRKGSTRAFPPHHP 384
>gi|384253307|gb|EIE26782.1| UPF0027-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 508
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/254 (69%), Positives = 199/254 (78%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GII N +DL+ LEMGMD+S+REGY WAEDK+HCEE+GRML+ADPSK
Sbjct: 150 LFDHIPVGVGSQGIIATNTKDLDTILEMGMDYSVREGYSWAEDKDHCEEHGRMLSADPSK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLG GNHYAEIQ++D+++D+ AA KMGI+ GQVC+M+HSGSRG G
Sbjct: 210 VSQRAKKRGLPQMGTLGGGNHYAEIQVIDKVFDEVAARKMGIDQEGQVCIMLHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL M+KAM RD I NDRQLAC RINSKEGQDYL MA
Sbjct: 270 HQVAT--------------DALTTMDKAMSRDGIIVNDRQLACTRINSKEGQDYLAGMAC 315
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAF K F DDLDMHV+YDVSHNIAK EEH+V+G K LLV
Sbjct: 316 AANFAWVNRSSMTFLVRQAFQKIFKQQADDLDMHVVYDVSHNIAKVEEHLVNGVPKRLLV 375
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 376 HRKGSTRAFPPHHP 389
>gi|281206289|gb|EFA80478.1| UPF0027 family protein [Polysphondylium pallidum PN500]
Length = 518
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/254 (71%), Positives = 205/254 (80%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM + L+ ALE+G+DWSLREGY W EDKEHCEEYGRMLNADPSK
Sbjct: 160 LFDHIPVGVGSKGVIPMGTKALDAALELGLDWSLREGYAWVEDKEHCEEYGRMLNADPSK 219
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V+ RAKKRGLPQLGTLGAGNHY E+Q+VDEI++ AA KMG++ +GQ+C+MIHSGSRG G
Sbjct: 220 VTERAKKRGLPQLGTLGAGNHYLEVQVVDEIFNPSAAKKMGVDQIGQICIMIHSGSRGLG 279
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL MEKAM RD I+ ND+QLACA INS+EGQDYL MAA
Sbjct: 280 HQVAT--------------DALTGMEKAMARDKIQINDKQLACAHINSQEGQDYLAGMAA 325
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR SMTFL RQ FAK FN++PDDLDMHVIYDVSHNIAK EEH+VDG+ K LLV
Sbjct: 326 AANFAWVNRQSMTFLARQTFAKAFNSSPDDLDMHVIYDVSHNIAKFEEHVVDGRPKKLLV 385
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 386 HRKGATRAFPPHHP 399
>gi|339265073|ref|XP_003366339.1| RtcB protein [Trichinella spiralis]
gi|316965152|gb|EFV49955.1| RtcB protein [Trichinella spiralis]
Length = 437
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/254 (71%), Positives = 199/254 (78%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVGS RD EE LEMGMDW+LREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 84 LFDFIPVGVGS--------RDFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLEADPAK 135
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+V+EIYDK AA +MGI+ GQVCVMIH GSRG G
Sbjct: 136 VSTRAKKRGLPQLGTLGAGNHYGEVQVVEEIYDKHAARRMGIDRKGQVCVMIHCGSRGLG 195
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVATG+ +ALV+M+KAM R+NI+ NDRQLACA + SKEGQ+YLK MAA
Sbjct: 196 HQVATGE-----------KNALVEMDKAMLRNNIKLNDRQLACAPLKSKEGQNYLKGMAA 244
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK F TPDDLDM V+YDVSHNIAK EEHMV+GK KTL V
Sbjct: 245 AANFAWVNRSCMTFCARQAFAKIFQCTPDDLDMQVVYDVSHNIAKIEEHMVEGKLKTLCV 304
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 305 HRKGSTRAFPPHHP 318
>gi|237840523|ref|XP_002369559.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|95007265|emb|CAJ20485.1| hypothetical protein, conserved [Toxoplasma gondii RH]
gi|211967223|gb|EEB02419.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|221482771|gb|EEE21102.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221503434|gb|EEE29132.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 519
Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 174/254 (68%), Positives = 199/254 (78%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP +LE ALE+G+DWSLREGY WAEDKEHCEE+GRML+A+ +K
Sbjct: 161 LFDHIPVGVGSQGIIPCKGPELEAALELGIDWSLREGYAWAEDKEHCEEFGRMLHANATK 220
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+V+EIYD +AA +MG+E QVCVMIHSGSRG G
Sbjct: 221 VSARAKKRGLPQMGTLGAGNHYAEIQVVEEIYDAYAARRMGLEREKQVCVMIHSGSRGLG 280
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME AM RD ++TNDRQLACAR+ S EGQDYL +M A
Sbjct: 281 HQVAT--------------DALVAMEAAMSRDKVKTNDRQLACARVGSPEGQDYLGAMCA 326
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSS+ FL R+AFAK +PDDLDMHV+YDVSHNIAK EEH V G + LLV
Sbjct: 327 AANYAWVNRSSIAFLAREAFAKVMKQSPDDLDMHVVYDVSHNIAKIEEHFVRGAPRRLLV 386
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 387 HRKGSTRAFPPHHP 400
>gi|17506665|ref|NP_492498.1| Protein F16A11.2 [Caenorhabditis elegans]
gi|2501619|sp|P90838.2|RTCB_CAEEL RecName: Full=tRNA-splicing ligase RtcB homolog
gi|6435496|emb|CAB04121.2| Protein F16A11.2 [Caenorhabditis elegans]
Length = 505
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/250 (69%), Positives = 196/250 (78%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAE+Q+VDEIYDK AAS MGI++ GQV VM+H GSRG G
Sbjct: 207 VSLRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDEEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+MEKAM RD I ND+QLACARINS EG++Y MAA
Sbjct: 267 HQVAT--------------DSLVEMEKAMARDGIVVNDKQLACARINSVEGKNYFSGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L V
Sbjct: 313 AANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRQLCV 372
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 373 HRKGATRAFP 382
>gi|300123121|emb|CBK24128.2| unnamed protein product [Blastocystis hominis]
Length = 518
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 175/254 (68%), Positives = 197/254 (77%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++DHIPVGVGSKGIIP+ + L +AL +GMDW LREGY W+EDKEHCEEYGRMLNAD +K
Sbjct: 140 LYDHIPVGVGSKGIIPITNQSLVDALSLGMDWCLREGYSWSEDKEHCEEYGRMLNADAAK 199
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA+ RG PQLGTLGAGNHYAEIQ+VDEI+D AA KMGIE GQV +MIHSGSRG G
Sbjct: 200 VSARAQHRGQPQLGTLGAGNHYAEIQVVDEIFDAVAAKKMGIEFCGQVVIMIHSGSRGLG 259
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D+LV ME+ M R IE NDRQLACA I S EGQDYL+ MAA
Sbjct: 260 HQVAS--------------DSLVDMERVMNRYGIEVNDRQLACAPIQSPEGQDYLRGMAA 305
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TFL RQAF+K F +PDDLDMHVIYDVSHNIAK E+HMV+GK TLLV
Sbjct: 306 AANFAWVNRSVLTFLTRQAFSKVFKMSPDDLDMHVIYDVSHNIAKVEQHMVNGKPMTLLV 365
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 366 HRKGATRAFPPHHP 379
>gi|323449299|gb|EGB05188.1| hypothetical protein AURANDRAFT_38645 [Aureococcus anophagefferens]
Length = 509
Score = 359 bits (922), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 181/257 (70%), Positives = 209/257 (81%), Gaps = 19/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G+IP ++ L+ AL MGMDWS+REGY WAEDK+HCEE GRML ADP+K
Sbjct: 150 LFDHIPVGVGSRGVIPTSSAHLDAALNMGMDWSIREGYSWAEDKDHCEEAGRMLQADPTK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHY EIQ+VDE+YD AA++MG+ VGQV +MIHSGSRG G
Sbjct: 210 VSRRAKKRGLPQMGTLGAGNHYVEIQVVDEVYDMHAANRMGLGMVGQVAIMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLKSMA 179
HQVAT DAL+ ME+AM+RD + TNDRQLACARINS EG+DYL +MA
Sbjct: 270 HQVAT--------------DALLAMERAMERDVGLRTNDRQLACARINSDEGKDYLGAMA 315
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAAN+AWVNRSSMTFL RQAFAKQF +TPDDLDM V+YDVSHNIAKTEEH VDGK +TLL
Sbjct: 316 AAANYAWVNRSSMTFLARQAFAKQFGSTPDDLDMQVVYDVSHNIAKTEEHFVDGKLRTLL 375
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P+HP V
Sbjct: 376 VHRKGATRAFPPNHPLV 392
>gi|323449610|gb|EGB05497.1| hypothetical protein AURANDRAFT_54616 [Aureococcus anophagefferens]
Length = 509
Score = 358 bits (920), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 181/257 (70%), Positives = 209/257 (81%), Gaps = 19/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G+IP ++ L+ AL MGMDWS+REGY WAEDK+HCEE GRML ADP+K
Sbjct: 150 LFDHIPVGVGSRGVIPTSSAHLDAALNMGMDWSIREGYSWAEDKDHCEEAGRMLQADPTK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHY EIQ+VDE+YD AA++MG+ VGQV +MIHSGSRG G
Sbjct: 210 VSRRAKKRGLPQMGTLGAGNHYVEIQVVDEVYDMHAANRMGLGMVGQVAIMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLKSMA 179
HQVAT DAL+ ME+AM+RD + TNDRQLACARINS EG+DYL +MA
Sbjct: 270 HQVAT--------------DALLAMERAMERDVGLVTNDRQLACARINSDEGKDYLGAMA 315
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAAN+AWVNRSSMTFL RQAFAKQF +TPDDLDM V+YDVSHNIAKTEEH VDGK +TLL
Sbjct: 316 AAANYAWVNRSSMTFLARQAFAKQFGSTPDDLDMQVVYDVSHNIAKTEEHFVDGKLRTLL 375
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P+HP V
Sbjct: 376 VHRKGATRAFPPNHPLV 392
>gi|401396351|ref|XP_003879800.1| upf0027 protein PH1602, related [Neospora caninum Liverpool]
gi|325114208|emb|CBZ49765.1| upf0027 protein PH1602, related [Neospora caninum Liverpool]
Length = 519
Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/254 (70%), Positives = 203/254 (79%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP +LE ALE+G+DWSLREGY WAEDKEHCEE+GRML+A+P+K
Sbjct: 161 LFDHIPVGVGSQGIIPCKGPELEAALELGIDWSLREGYAWAEDKEHCEEFGRMLHANPTK 220
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEIYD++AA +MGIE QVCVMIHSGSRG G
Sbjct: 221 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEYAARRMGIEREKQVCVMIHSGSRGLG 280
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME AM + I+TNDRQLACARI+S EGQDYL +MAA
Sbjct: 281 HQVAT--------------DALVAMEAAMTKHKIKTNDRQLACARIDSPEGQDYLGAMAA 326
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSS+ FL R+AFAK TPDDLDMH++YDVSHNIAK EEH V+G K LLV
Sbjct: 327 AANYAWVNRSSIAFLAREAFAKVMKQTPDDLDMHMVYDVSHNIAKIEEHFVNGSPKRLLV 386
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 387 HRKGSTRAFPPHHP 400
>gi|341880610|gb|EGT36545.1| hypothetical protein CAEBREN_06674 [Caenorhabditis brenneri]
Length = 505
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 178/250 (71%), Positives = 197/250 (78%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSKGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAE+Q+VDEIYDK AAS MGI+ GQV VM+H GSRG G
Sbjct: 207 VSMRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+ME+AM RD I ND+QLACARINS+EG+DY MAA
Sbjct: 267 HQVAT--------------DSLVEMERAMARDGIMVNDKQLACARINSQEGKDYFAGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F +PDD+DM VIYDVSHN+AK EEHMVDG+ K L V
Sbjct: 313 AANFAWVNRSCITFCVRNAFQKTFGMSPDDMDMQVIYDVSHNVAKMEEHMVDGRPKKLCV 372
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 373 HRKGATRAFP 382
>gi|298709060|emb|CBJ31009.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 504
Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/254 (68%), Positives = 204/254 (80%), Gaps = 19/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVG+KG++P+ A DL + LEMG+DWS+REGY W EDKEHCEEYGRML ADP+K
Sbjct: 147 LFDHIPVGVGTKGMVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ RAK RGLPQLGTLGAGNHYAEIQ+V+E+YD+ AA KMGI+ V QVC+MIHSGSRG G
Sbjct: 207 -ARRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLG 265
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME AM RDNI+ NDRQLACA+INS+EGQDYL MAA
Sbjct: 266 HQVAT--------------DALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAA 311
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNR+ MTFL R+AF+K+F T ++LDMHV+YDVSHNIAK E+H+VDG KTLLV
Sbjct: 312 AANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLV 371
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 372 HRKGATRAFPPHHP 385
>gi|452825584|gb|EME32580.1| hypothetical protein Gasu_03500 [Galdieria sulphuraria]
Length = 507
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 172/254 (67%), Positives = 204/254 (80%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD+IPVGVGSKG+IP+ ++ LEE L+ GMDWSLREGY WAEDKEHCEEYGR+L A+P+K
Sbjct: 149 LFDYIPVGVGSKGVIPVGSKQLEEVLQYGMDWSLREGYSWAEDKEHCEEYGRLLQANPAK 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA+KRG PQLGTLGAGNHYAEIQ+VDEIYD +AA +MG+ + GQVC+MIHSGSRG G
Sbjct: 209 VSSRARKRGFPQLGTLGAGNHYAEIQVVDEIYDTFAAKRMGLVEKGQVCIMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL ME+AM +D+++ NDRQLACARI SK GQDYL++MAA
Sbjct: 269 HQVAT--------------DALQLMEEAMAKDHLKLNDRQLACARIQSKPGQDYLEAMAA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+VNRSSMTFL RQAF+K F+ + DDLDMH++YDVSHNIAK EEH DGK LLV
Sbjct: 315 AANYAFVNRSSMTFLTRQAFSKVFDVSADDLDMHLVYDVSHNIAKIEEHWYDGKPVQLLV 374
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 375 HRKGATRAFPPYHP 388
>gi|308476896|ref|XP_003100663.1| hypothetical protein CRE_20444 [Caenorhabditis remanei]
gi|308264681|gb|EFP08634.1| hypothetical protein CRE_20444 [Caenorhabditis remanei]
Length = 505
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 176/250 (70%), Positives = 195/250 (78%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSRGAIPMMASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAE+Q+VDEIYDK AAS MGI+ GQV VM+H GSRG G
Sbjct: 207 VSMRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+MEKAM RD I ND+QLACARINS EG++Y MAA
Sbjct: 267 HQVAT--------------DSLVEMEKAMARDGIMVNDKQLACARINSTEGKNYFAGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ K L V
Sbjct: 313 AANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPKKLCV 372
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 373 HRKGATRAFP 382
>gi|156088997|ref|XP_001611905.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799159|gb|EDO08337.1| uncharacterized protein family UPF0027 family protein [Babesia
bovis]
Length = 438
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 165/256 (64%), Positives = 198/256 (77%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP L + LE GMDW++ +GY WAEDKEHCEE+GRM+ AD +
Sbjct: 127 IFDHIPVGVGSQGIIPCTNAALNDILEYGMDWTVAQGYSWAEDKEHCEEFGRMIQADSTM 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAE+Q+V+E+YDK AA MGI +V Q+CVMIHSGSRG G
Sbjct: 187 VSSRAKKRGLPQMGTLGAGNHYAEVQVVEEVYDKLAAKAMGIHEVNQICVMIHSGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL+ ME + +I+ D+QL+CA+INS EG +YLK+MAA
Sbjct: 247 HQVAT--------------DALLHMEASPSASSIKVLDKQLSCAKINSPEGINYLKAMAA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AWVNRS++TFL RQAF+K F TPDDLDMH+IYDVSHNIAK EEHMVDG+ +TLLV
Sbjct: 293 ASNYAWVNRSAITFLMRQAFSKTFGETPDDLDMHLIYDVSHNIAKVEEHMVDGQCQTLLV 352
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 353 HRKGSTRAFGPLHPLV 368
>gi|268563869|ref|XP_002638955.1| Hypothetical protein CBG22190 [Caenorhabditis briggsae]
Length = 505
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/250 (70%), Positives = 195/250 (78%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDK AAS MGI+ GQV VM+H GSRG G
Sbjct: 207 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+MEKAM RD I ND+QLACARINS EG++Y MAA
Sbjct: 267 HQVAT--------------DSLVEMEKAMARDGIFVNDKQLACARINSTEGKNYFAGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L V
Sbjct: 313 AANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRKLCV 372
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 373 HRKGATRAFP 382
>gi|330846240|ref|XP_003294952.1| hypothetical protein DICPUDRAFT_90903 [Dictyostelium purpureum]
gi|325074475|gb|EGC28523.1| hypothetical protein DICPUDRAFT_90903 [Dictyostelium purpureum]
Length = 491
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/254 (65%), Positives = 192/254 (75%), Gaps = 32/254 (12%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDH+PVGVGSKG+IPMN + L +ALEMG+DWS+ EGY W EDKEH E
Sbjct: 147 LFDHVPVGVGSKGVIPMNMKTLNQALEMGIDWSMGEGYAWCEDKEHFSE----------- 195
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
RAKKRGLPQLGTLGAGNHY E+Q+VDEI+DK AA+KMG++ GQ+C+MIHSGSRG G
Sbjct: 196 ---RAKKRGLPQLGTLGAGNHYLEVQVVDEIFDKAAANKMGVDRKGQICIMIHSGSRGLG 252
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL MEKAM RD+I ND+QLAC+RINS+EGQDYL M+A
Sbjct: 253 HQVAT--------------DALTLMEKAMARDHIHLNDKQLACSRINSQEGQDYLAGMSA 298
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR SMTFL RQAFAK FN+TPDDLDMHVIYDVSHNIAK E+H V+G+ K LLV
Sbjct: 299 AANFAWVNRQSMTFLTRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEDHTVNGRPKRLLV 358
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 359 HRKGATRAFAPHHP 372
>gi|82539131|ref|XP_723978.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|74880976|sp|Q7RI54.1|RTCB_PLAYO RecName: Full=tRNA-splicing ligase RtcB homolog
gi|23478461|gb|EAA15543.1| Uncharacterized protein family UPF0027 [Plasmodium yoelii yoelii]
Length = 507
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 192/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK +CE+ GR L A+
Sbjct: 149 LFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSLYANSDY 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 209 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK M + I D+QLAC I+S EGQ+YLK+M A
Sbjct: 269 HQIAT--------------DALIEMEKVMSKYKINVIDKQLACTPIHSPEGQNYLKAMGA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLV
Sbjct: 315 ACNFAWINRSSMTFLARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLV 374
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 375 HRKGSTRAFPPFHPLV 390
>gi|389583607|dbj|GAB66341.1| hypothetical protein PCYB_091270, partial [Plasmodium cynomolgi
strain B]
Length = 511
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/256 (62%), Positives = 195/256 (76%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK +CE+ GR L AD +
Sbjct: 153 LFNNIPVGVGSQGCILCNHDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSLYADSNY 212
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYDK +A MG+E QVC+MIHSGSRG G
Sbjct: 213 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDKRSAKLMGVEKTSQVCIMIHSGSRGLG 272
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK+M + ++ D+QLAC I+SKEG++YLK+M +
Sbjct: 273 HQIAT--------------DALIEMEKSMTKYKLDVIDKQLACTPIHSKEGENYLKAMGS 318
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQ FAK FN +PDDLDMHVIYDVSHNIAK E+H+VDGK+K LLV
Sbjct: 319 ACNFAWINRSSMTFLARQTFAKIFNQSPDDLDMHVIYDVSHNIAKIEDHLVDGKRKKLLV 378
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 379 HRKGSTRAFPPFHPAV 394
>gi|124803520|ref|XP_001347744.1| conserved protein [Plasmodium falciparum 3D7]
gi|74863421|sp|Q8IIU6.1|RTCB_PLAF7 RecName: Full=tRNA-splicing ligase RtcB homolog
gi|23495994|gb|AAN35657.1| conserved protein [Plasmodium falciparum 3D7]
Length = 506
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 162/256 (63%), Positives = 193/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK +CE+ GR L AD +
Sbjct: 148 LFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSLYADSNF 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSIRAKKRGITQMGTLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL+ MEK+M + I D+QLAC I+SKEGQ+YLK+M +
Sbjct: 268 HQIAT--------------DALIDMEKSMNKYKINVIDKQLACTPIHSKEGQNYLKAMGS 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH +DGK K LLV
Sbjct: 314 ACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHYIDGKIKKLLV 373
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 374 HRKGSTRAFPPFHPLV 389
>gi|70942886|ref|XP_741555.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56520010|emb|CAH79229.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 427
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 192/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK +CE+ GR L A+
Sbjct: 148 LFNHIPVGVGSQGFILCNQNNLDDALNLGMDWSVKEGYSWIEDKLNCEDNGRSLYANSDY 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK M + I D+QLAC I+S EGQ+YLK+M A
Sbjct: 268 HQIAT--------------DALIEMEKIMSKYKINVIDKQLACTPIHSPEGQNYLKAMGA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLV
Sbjct: 314 ACNFAWINRSSMTFLARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLV 373
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 374 HRKGSTRAFPPFHPLV 389
>gi|221055838|ref|XP_002259057.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|327488443|sp|B3L4K9.1|RTCB_PLAKH RecName: Full=tRNA-splicing ligase RtcB homolog
gi|193809128|emb|CAQ39830.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 511
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 193/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK +CE+ GR AD +
Sbjct: 153 LFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSFYADSNY 212
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 213 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLG 272
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK+M + I+ D+QLAC I+SKEGQ+YLK+M +
Sbjct: 273 HQIAT--------------DALIEMEKSMTKYKIDVIDKQLACTPIHSKEGQNYLKAMGS 318
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQ FAK FN +PDDLDMHVIYD+SHNIAK E+H+VDGK K LLV
Sbjct: 319 ACNFAWINRSSMTFLARQTFAKIFNQSPDDLDMHVIYDISHNIAKMEDHLVDGKMKKLLV 378
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 379 HRKGSTRAFPPFHPAV 394
>gi|156098308|ref|XP_001615186.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148804060|gb|EDL45459.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 511
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/256 (62%), Positives = 193/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK +CE+ GR L AD +
Sbjct: 153 LFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSLYADSNH 212
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYD+ +A MGIE QVCVMIHSGSRG G
Sbjct: 213 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDRRSAKLMGIEKKNQVCVMIHSGSRGLG 272
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK+M + + D+QLAC I+S EG++YLK+M +
Sbjct: 273 HQIAT--------------DALIEMEKSMAKYKLNVIDKQLACTPIHSTEGKNYLKAMGS 318
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQ FAK FN +PDDLDMHVIYDVSHNIAK E+H+VDGK+K LLV
Sbjct: 319 ACNFAWINRSSMTFLARQTFAKIFNQSPDDLDMHVIYDVSHNIAKIEDHLVDGKRKKLLV 378
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 379 HRKGSTRAFPPFHPAV 394
>gi|307110210|gb|EFN58446.1| hypothetical protein CHLNCDRAFT_55997 [Chlorella variabilis]
Length = 487
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/261 (64%), Positives = 185/261 (70%), Gaps = 51/261 (19%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLRE-------GYIWAEDKEHCEEYGRM 53
+FDHIPVGVGS+GIIP ARDLEEALEMGMDWSLRE GY WA+DKEH EEYG M
Sbjct: 148 LFDHIPVGVGSQGIIPTTARDLEEALEMGMDWSLREASRRLQGGYSWAQDKEHWEEYGGM 207
Query: 54 LNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIH 113
+ +PSKV VDE++D+ AA KMGI+ VGQVCVMIH
Sbjct: 208 VGGEPSKV--------------------------VDEVFDRVAARKMGIDQVGQVCVMIH 241
Query: 114 SGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQD 173
SGSRG GHQVAT DALV ME+AM RD I TNDRQLACARI S+EGQD
Sbjct: 242 SGSRGLGHQVAT--------------DALVGMERAMARDGILTNDRQLACARIGSQEGQD 287
Query: 174 YLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 233
YL +MA AAN+AWVNRSSMTFLCRQAFAK F +TPDDLDMHV+YDVSHNIAK EEH+VDG
Sbjct: 288 YLTAMACAANYAWVNRSSMTFLCRQAFAKMFGSTPDDLDMHVVYDVSHNIAKVEEHLVDG 347
Query: 234 KQKTLLVHRKVSE----PSHP 250
+ KTLLVHRK S P HP
Sbjct: 348 QLKTLLVHRKGSTRAFPPHHP 368
>gi|71029308|ref|XP_764297.1| hypothetical protein [Theileria parva strain Muguga]
gi|122051395|sp|Q4N1R8.1|RTCB_THEPA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|68351251|gb|EAN32014.1| hypothetical protein, conserved [Theileria parva]
Length = 507
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/257 (60%), Positives = 192/257 (74%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVG +G IP + DL+ LE GMDWS+ GY WAEDKEHCE++GRM+ ADP+
Sbjct: 149 LFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTV 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGL Q+GTLGAGNHY E+Q+V+EIYD+++A MGI+ +GQVC+M HSGSRG G
Sbjct: 209 VSYRAKKRGLSQIGTLGAGNHYGEVQVVEEIYDEYSAKVMGIDRIGQVCIMTHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ DALV ME ++ + I+ ND+QLACARINS EG+ YLK MAA
Sbjct: 269 HQVAS--------------DALVDMENSLNKSKIKVNDKQLACARINSDEGKKYLKGMAA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AWVNRS MT L R+AF + + DDLDMHV+YDVSHNIAK E+H+VDGK K LL+
Sbjct: 315 ASNYAWVNRSVMTHLTRKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHIVDGKLKRLLL 374
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP +S
Sbjct: 375 HRKGSTRAFPPYHPLIS 391
>gi|294944749|ref|XP_002784411.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897445|gb|EER16207.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 513
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/261 (61%), Positives = 198/261 (75%), Gaps = 20/261 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++D IPVGVGS+G++P+N L EAL+ GMDWS+REGY W EDK HCEE GR+LNA+ ++
Sbjct: 153 LYDCIPVGVGSEGVVPVNQDTLREALQYGMDWSVREGYSWVEDKYHCEEQGRLLNANATE 212
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA RG+PQLGTLGAGNHYAE+Q+VDEIYDK+AA ++G++ GQVC+M+HSGSRG G
Sbjct: 213 VSRRAMIRGVPQLGTLGAGNHYAEVQVVDEIYDKYAAKQLGLDRPGQVCLMMHSGSRGLG 272
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEK-AMKRDN-IETNDRQLACARINSKEGQDYLKSM 178
HQVAT DAL M K AM R N I ND QL+CA I+S+EGQ YL+SM
Sbjct: 273 HQVAT--------------DALQLMCKAAMSRKNPIHLNDPQLSCAPIHSEEGQLYLRSM 318
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAAANFAWVNRS++TF+ RQAF+K F DDLDMHV+YD+SHN AK EEH+VDG K L
Sbjct: 319 AAAANFAWVNRSTITFMARQAFSKVFKQDADDLDMHVVYDISHNTAKLEEHLVDGVVKQL 378
Query: 239 LVHRKVS----EPSHPGVSRN 255
L+HRK + P+HP V+ +
Sbjct: 379 LIHRKGATRAFPPNHPLVASD 399
>gi|68067927|ref|XP_675888.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|74989492|sp|Q4YUZ9.1|RTCB_PLABA RecName: Full=tRNA-splicing ligase RtcB homolog
gi|56495322|emb|CAH98157.1| conserved hypothetical protein [Plasmodium berghei]
Length = 505
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 159/256 (62%), Positives = 191/256 (74%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK +CE+ GR L A+
Sbjct: 148 LFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSLYANSDY 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIY+K +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYNKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK M + I D+QLAC I+S EGQ+YLK+M A
Sbjct: 268 HQIAT--------------DALIEMEKIMSKYKINVIDKQLACTPIHSPEGQNYLKAMGA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL QAF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLV
Sbjct: 314 ACNFAWINRSSMTFLA-QAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLV 372
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 373 HRKGSTRAFPPFHPLV 388
>gi|84997167|ref|XP_953305.1| hypothetical protein [Theileria annulata strain Ankara]
gi|74950546|sp|Q4U923.1|RTCB_THEAN RecName: Full=tRNA-splicing ligase RtcB homolog
gi|65304301|emb|CAI76680.1| hypothetical protein, conserved [Theileria annulata]
Length = 515
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 192/265 (72%), Gaps = 26/265 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVG +G IP + DL+ LE GMDWS+ GY WAEDKEHCE++GRM+ ADP+
Sbjct: 149 LFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTV 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQI--------VDEIYDKWAASKMGIEDVGQVCVMI 112
VS RAKKRGL Q+GTLGAGNHY E+Q+ V+EIYD+++A MGI+ +GQVC+M
Sbjct: 209 VSYRAKKRGLSQIGTLGAGNHYGEVQVSIYSNIYVVEEIYDEYSAKVMGIDRIGQVCIMT 268
Query: 113 HSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQ 172
HSGSRG GHQVA+ DALV ME ++ + I+ ND+QLACARINS EG+
Sbjct: 269 HSGSRGLGHQVAS--------------DALVDMENSLNKSKIKVNDKQLACARINSDEGK 314
Query: 173 DYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 232
YLK MAAA+N+AWVNRS MT L R+AF + + DDLDMHV+YDVSHNIAK E+HMVD
Sbjct: 315 KYLKGMAAASNYAWVNRSVMTHLTRKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHMVD 374
Query: 233 GKQKTLLVHRKVSE----PSHPGVS 253
GK K LL+HRK S P HP +S
Sbjct: 375 GKLKRLLLHRKGSTRAFPPYHPLIS 399
>gi|429329769|gb|AFZ81528.1| uncharacterized protein family UPF0027 domain-containing protein
[Babesia equi]
Length = 503
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 154/257 (59%), Positives = 193/257 (75%), Gaps = 21/257 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD+IPVGVGS+G IP +DL++ L+ GMDW++ GY WAEDKEHCE++GRM+ AD SK
Sbjct: 148 LFDYIPVGVGSEGKIPCKYKDLDDILQYGMDWTVSNGYSWAEDKEHCEDFGRMIQADSSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGL Q+GTLGAGNHYAEIQ+V+++YD+++A MGI+ QVC+MIHSGSRG G
Sbjct: 208 VSQRAKKRGLAQIGTLGAGNHYAEIQVVEDVYDEFSARTMGIDKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ DALV ME ++ +I+ ND QLACARINS EG YLK+MAA
Sbjct: 268 HQVAS--------------DALVDMESSL---DIKVNDSQLACARINSPEGTKYLKAMAA 310
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AWVNRS MT L R+AF+ + DDLDMH++YDVSHNIAK EEH ++GK K LL+
Sbjct: 311 ASNYAWVNRSVMTHLTRKAFSDVLKESADDLDMHLVYDVSHNIAKIEEHCINGKHKRLLM 370
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP +S
Sbjct: 371 HRKGSTRAFPPFHPMIS 387
>gi|341891712|gb|EGT47647.1| hypothetical protein CAEBREN_25556 [Caenorhabditis brenneri]
Length = 491
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/250 (66%), Positives = 184/250 (73%), Gaps = 28/250 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSKGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAE+Q+VDEIYDK AAS MGI+ GQV VM+H GSRG G
Sbjct: 207 VSMRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDQEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+ME+AM RD I EG+DY MAA
Sbjct: 267 HQVAT--------------DSLVEMERAMARDGI--------------MEGKDYFAGMAA 298
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F +PDD+DM VIYDVSHN+AK EEHMVDG+ K L V
Sbjct: 299 AANFAWVNRSCITFCVRNAFQKTFGMSPDDMDMQVIYDVSHNVAKMEEHMVDGRPKKLCV 358
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 359 HRKGATRAFP 368
>gi|403223729|dbj|BAM41859.1| uncharacterized protein TOT_040000239 [Theileria orientalis strain
Shintoku]
Length = 449
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/257 (60%), Positives = 198/257 (77%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVG +G IP ++ DL++ LE GMDWS+ GY WAEDKEHCEE+GRM+ ADP+
Sbjct: 149 LFDLIPVGVGCQGQIPCDSNDLDDILEYGMDWSVSSGYSWAEDKEHCEEFGRMVQADPTV 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGL Q+GTLGAGNHYAE+Q+V+EIYD+++A MGI+ +GQVCVM+H+GSRG G
Sbjct: 209 VSFRAKKRGLSQIGTLGAGNHYAEVQVVEEIYDEYSAKVMGIDRIGQVCVMMHTGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ DALV ME ++ + I+ ND+QLACARI+S+EG+ Y+K+MAA
Sbjct: 269 HQVAS--------------DALVDMENSLNKSKIKVNDKQLACARIHSEEGRKYIKAMAA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRS MT L R++F + + DDLDMHV+YDVSHNIAK E+HM+DGK K LL+
Sbjct: 315 AANYAWVNRSVMTHLARKSFEEVLRESADDLDMHVVYDVSHNIAKIEDHMIDGKLKRLLL 374
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP +S
Sbjct: 375 HRKGSTRAFPPYHPLIS 391
>gi|224013432|ref|XP_002296380.1| hypothetical protein THAPSDRAFT_41953 [Thalassiosira pseudonana
CCMP1335]
gi|327488444|sp|B8LBM8.1|RTCB_THAPS RecName: Full=tRNA-splicing ligase RtcB homolog
gi|220968732|gb|EED87076.1| hypothetical protein THAPSDRAFT_41953 [Thalassiosira pseudonana
CCMP1335]
Length = 480
Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/259 (59%), Positives = 193/259 (74%), Gaps = 18/259 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IPVGVG G IP + DL++ L G+DW++ +GY W EDK+HCEE G M ADP+
Sbjct: 122 LFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCMETADPNC 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGL QLGTLGAGNHY EIQ+VDE+Y+ AA MGI VGQVC+MIH+GSRG G
Sbjct: 182 VSKRAKKRGLKQLGTLGAGNHYTEIQVVDEVYNTEAAKIMGIGTVGQVCIMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL ME+AM RD I+ NDRQL+CARI+SKEG++YL +M+A
Sbjct: 242 HQVAT--------------DALQVMEEAMCRDAIDLNDRQLSCARISSKEGREYLAAMSA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +T+L R+AF++ F DD+DMH++YDV HNIAK E+H+VDG+QKTLLV
Sbjct: 288 AANFAWVNRSCITYLARKAFSEVFQRESDDMDMHLVYDVCHNIAKVEQHIVDGEQKTLLV 347
Query: 241 HRKVSE----PSHPGVSRN 255
HRK S P HP + ++
Sbjct: 348 HRKGSTRAYPPCHPDIPKD 366
>gi|399218524|emb|CCF75411.1| unnamed protein product [Babesia microti strain RI]
Length = 510
Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 179/250 (71%), Gaps = 19/250 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IPVGVGSKG I + DL + L GM+W+ G+ W+ED+E CEE G+M AD +
Sbjct: 147 LFNKIPVGVGSKGTIKCSDGDLFDILTRGMEWAEESGFAWSEDRERCEERGKMSQADATL 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRG+PQLGTLGAGNHY E+Q+V+EIYD AA MG+E GQVC+MIHSGSRG G
Sbjct: 207 VSDRAKKRGIPQLGTLGAGNHYVEVQVVEEIYDSRAARAMGLEVEGQVCMMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ DAL MEK NI TND QLAC+ INS+ GQ YLK MAA
Sbjct: 267 HQVAS--------------DALNNMEK-----NIPTNDPQLACSHINSESGQRYLKCMAA 307
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRS MT L R A ++ F+ DDLDMH+IYDVSHN+AK EEHMVDGK K LLV
Sbjct: 308 AANYAWVNRSVMTHLSRVALSEVFDMDADDLDMHIIYDVSHNVAKIEEHMVDGKPKNLLV 367
Query: 241 HRKVSEPSHP 250
HRK + ++P
Sbjct: 368 HRKGATRAYP 377
>gi|443722955|gb|ELU11596.1| hypothetical protein CAPTEDRAFT_227476 [Capitella teleta]
Length = 446
Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 140/182 (76%), Positives = 147/182 (80%), Gaps = 18/182 (9%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGTLGAGNHYAEIQ+VD+IYDK+AASKMGIE GQVCVMIH GSRG GHQVAT
Sbjct: 160 LGTLGAGNHYAEIQVVDDIYDKFAASKMGIEHKGQVCVMIHCGSRGLGHQVAT------- 212
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
DALV MEKAMKRDNI NDRQLACA I+S+EGQDYLK MAAAAN+AWVNRSSM
Sbjct: 213 -------DALVAMEKAMKRDNIVVNDRQLACAHIHSQEGQDYLKGMAAAANYAWVNRSSM 265
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PS 248
TFLCRQ+FAK F TTPDDLDMHVIYDVSHNIAK EEH V GKQKTLLVHRK S P
Sbjct: 266 TFLCRQSFAKMFQTTPDDLDMHVIYDVSHNIAKVEEHFVGGKQKTLLVHRKGSTRAFPPH 325
Query: 249 HP 250
HP
Sbjct: 326 HP 327
>gi|156937187|ref|YP_001434983.1| hypothetical protein Igni_0393 [Ignicoccus hospitalis KIN4/I]
gi|156566171|gb|ABU81576.1| protein of unknown function UPF0027 [Ignicoccus hospitalis KIN4/I]
Length = 484
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/259 (51%), Positives = 182/259 (70%), Gaps = 18/259 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GS G + ++ +L++ LE G+ W++ GY W++D EH EE+GRM AD SK
Sbjct: 127 LFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAVERGYGWSDDPEHIEEHGRMKYADASK 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAK+RG PQLGTLG+GNH+ E+Q+VD+IYD+ AA MGI GQV VM+H+GSRG G
Sbjct: 187 VSMRAKQRGAPQLGTLGSGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHTGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L++ME+AMK+ I DR+LA NS E QDY K+M+A
Sbjct: 247 HQVAS--------------DYLIKMERAMKKYGIVVPDRELASVPFNSPEAQDYFKAMSA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++F + F T P++LDMH++YDV+HNIAK EEH VDGK+K L+V
Sbjct: 293 AANYAWTNRQLITHWTRESFKEVFKTDPENLDMHIVYDVAHNIAKIEEHDVDGKRKKLVV 352
Query: 241 HRKVS----EPSHPGVSRN 255
HRK + P HP + ++
Sbjct: 353 HRKGATRAFPPGHPEIPQD 371
>gi|405963892|gb|EKC29424.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 643
Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/220 (65%), Positives = 153/220 (69%), Gaps = 36/220 (16%)
Query: 37 GYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWA 96
GY WAEDKEHCEEYGRML AD KVS RAKKRGLPQLGTLGA NHYAEIQ+VDEIY+K+A
Sbjct: 392 GYAWAEDKEHCEEYGRMLQADHGKVSSRAKKRGLPQLGTLGASNHYAEIQVVDEIYNKFA 451
Query: 97 ASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIET 156
A KM S R ALV MEKAMKRDNI
Sbjct: 452 AKKMA------------SSVRDRY--------------------ALVAMEKAMKRDNINV 479
Query: 157 NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVI 216
NDRQL CA+I EGQDYLK M AAAN+AWVNRSSMTFLCRQAFAK F++T DDLDM +I
Sbjct: 480 NDRQLVCAKIYFPEGQDYLKGMEAAANYAWVNRSSMTFLCRQAFAKMFDSTADDLDMFMI 539
Query: 217 YDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHPGV 252
YDVSHNIAK EEH VDGKQKTLLVHRK S P HP +
Sbjct: 540 YDVSHNIAKVEEHFVDGKQKTLLVHRKGSTRAFPPHHPLI 579
>gi|312087377|ref|XP_003145448.1| hypothetical protein LOAG_09873 [Loa loa]
Length = 287
Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 133/182 (73%), Positives = 144/182 (79%), Gaps = 18/182 (9%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGTLGAGNHY E+Q+VDEIYD++AAS+MGI+ +GQVCVMIH GSRG GHQVAT
Sbjct: 1 LGTLGAGNHYGEVQVVDEIYDEYAASRMGIDRLGQVCVMIHCGSRGLGHQVAT------- 53
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D+LV MEKAMKRDNI NDRQLACARINS EGQDYLK MAAAANFAWVNRS M
Sbjct: 54 -------DSLVVMEKAMKRDNIIVNDRQLACARINSVEGQDYLKGMAAAANFAWVNRSCM 106
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PS 248
TF RQAFAK FNT+PDDLDMHVIYDVSHNIAK EEH+VDG+ K L VHRK S P
Sbjct: 107 TFCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLVDGRPKQLCVHRKGSTRAFPPH 166
Query: 249 HP 250
HP
Sbjct: 167 HP 168
>gi|402696901|gb|AFQ90639.1| chromosome 22 open reading frame 28, partial [Malaclemys terrapin]
Length = 236
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/159 (77%), Positives = 134/159 (84%), Gaps = 14/159 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 92 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 151
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 152 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLG 211
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDR 159
HQVAT DALV MEKAMKRD I NDR
Sbjct: 212 HQVAT--------------DALVAMEKAMKRDXIIVNDR 236
>gi|402696903|gb|AFQ90640.1| chromosome 22 open reading frame 28, partial [Testudo hermanni]
Length = 236
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 134/159 (84%), Gaps = 14/159 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 92 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 151
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS R+KKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 152 VSSRSKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLG 211
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDR 159
HQVAT DALV MEKAMKRD I NDR
Sbjct: 212 HQVAT--------------DALVSMEKAMKRDKIIVNDR 236
>gi|332797098|ref|YP_004458598.1| RNA splicing ligase [Acidianus hospitalis W1]
gi|332694833|gb|AEE94300.1| archaeal RNA splicing ligase [Acidianus hospitalis W1]
Length = 479
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/247 (50%), Positives = 166/247 (67%), Gaps = 14/247 (5%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVGS+G + ++ + L+E L G+ W++ +GY WAED EH E++G ADPSKVS
Sbjct: 125 NVPSGVGSEGKVKLSTQQLDEVLAEGVKWAIDKGYGWAEDMEHIEQHGSWDIADPSKVSD 184
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
AKKRG QLGTLGAGNH+ E+Q+VD+IYD+ A +GI GQV VM+H+GSRG GHQ+
Sbjct: 185 IAKKRGASQLGTLGAGNHFLEVQVVDKIYDEKIAKALGITHEGQVMVMVHTGSRGLGHQI 244
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L ME+AMK+ NI DR+LA S+EGQDY +M + AN
Sbjct: 245 AS--------------DYLQIMERAMKKYNITVPDRELAAIPFESREGQDYFHAMVSGAN 290
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T R++F F P+ LD+H+IYDV+HNIAK EE+ V+GK+K LLVHRK
Sbjct: 291 FAWTNRQLITHWVRESFGNVFKVDPEKLDLHIIYDVAHNIAKIEEYDVEGKRKKLLVHRK 350
Query: 244 VSEPSHP 250
+ + P
Sbjct: 351 GATRAFP 357
>gi|374633762|ref|ZP_09706127.1| hypothetical protein MetMK1DRAFT_00029040 [Metallosphaera
yellowstonensis MK1]
gi|373523550|gb|EHP68470.1| hypothetical protein MetMK1DRAFT_00029040 [Metallosphaera
yellowstonensis MK1]
Length = 480
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 167/250 (66%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P GVGS+G + ++ ++L+ L G+ W +GY WAED + E+ G ADPSK
Sbjct: 123 LYRNVPSGVGSEGKVKLSQQELDNLLSEGVKWVTDKGYGWAEDMNNIEQRGSWDLADPSK 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ E+Q+VD+IYD+ A +GI GQV VM+H+GSRG G
Sbjct: 183 VSSVAKQRGASQLGTLGAGNHFLEVQVVDKIYDERVAKSLGITREGQVTVMVHTGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A+ D L ME+AMK+ I+ DR+LA NS+EGQDY ++M A
Sbjct: 243 HQIAS--------------DYLQIMERAMKKYGIQVPDRELAAIPFNSREGQDYFRAMVA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFAW NR +T R++F K F P+ LD+H+IYDV+HNIAK EE+ +DGK+K +LV
Sbjct: 289 GANFAWSNRQLITHWARESFGKVFKVDPEKLDLHIIYDVAHNIAKIEEYSIDGKKKRVLV 348
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 349 HRKGATRAFP 358
>gi|389615208|dbj|BAM20590.1| simila to CG9987 [Papilio polytes]
Length = 276
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 122/125 (97%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAEIQ+VDEI+DK+AASKMG+E GQV VMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIFDKYAASKMGLERTGQVVVMIHSGSRGFG 267
Query: 121 HQVAT 125
HQVAT
Sbjct: 268 HQVAT 272
>gi|124027405|ref|YP_001012725.1| hypothetical protein Hbut_0518 [Hyperthermus butylicus DSM 5456]
gi|123978099|gb|ABM80380.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
Length = 484
Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 132/259 (50%), Positives = 177/259 (68%), Gaps = 18/259 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+GS G I ++ ++L + L+ G++W+++ GY WAED +H EE G AD SK
Sbjct: 127 LFRNIPSGLGSSGKIRLSIQELNKVLDEGVEWAVQRGYGWAEDPDHIEERGSWTAADSSK 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG QLGTLG+GNH+ E+Q+VD+IYD A MGI GQV VM+H+GSRG G
Sbjct: 187 VSDRAKRRGAEQLGTLGSGNHFLEVQVVDKIYDPKLAEAMGITHEGQVMVMVHTGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I DR+LA NS+EGQDY K+MAA
Sbjct: 247 HQVAS--------------DYLMIMERAMRKYGIRPPDRELASVPFNSREGQDYFKAMAA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T+ R++F K F+ PD LDM ++YDV+HNIAK EEH VDGK+K L+V
Sbjct: 293 AANFAWTNRQLITYWARESFKKVFHRDPDQLDMVIVYDVAHNIAKLEEHDVDGKRKQLIV 352
Query: 241 HRKVS----EPSHPGVSRN 255
HRK + P HP + ++
Sbjct: 353 HRKGATRAFPPGHPQIPKD 371
>gi|150399454|ref|YP_001323221.1| hypothetical protein Mevan_0703 [Methanococcus vannielii SB]
gi|150012157|gb|ABR54609.1| protein of unknown function UPF0027 [Methanococcus vannielii SB]
Length = 480
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 165/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+DW+ EGY W D H EE+G+M NAD S
Sbjct: 123 IFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGYAWKNDYRHIEEHGKMKNADASL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ E+Q VDEI+D+ AA G+E QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDENAAKAYGVEK-DQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA I+S+EG Y +M+A
Sbjct: 242 HQICA--------------DYLRYMESASKKYNIKLPDRQLACAPISSEEGMRYFNAMSA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AWVNR +T R++F + F + +DL+M +IYDV+HNIAK E+H++DGK K ++V
Sbjct: 288 GANYAWVNRQLVTNWIRESFEQVFKMSAEDLEMDIIYDVAHNIAKKEQHIIDGKMKNVIV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|320101388|ref|YP_004176980.1| hypothetical protein [Desulfurococcus mucosus DSM 2162]
gi|319753740|gb|ADV65498.1| protein of unknown function UPF0027 [Desulfurococcus mucosus DSM
2162]
Length = 482
Score = 249 bits (636), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 167/256 (65%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS G + + +L+E L G++W++ G+ W D EH EE GRM AD K
Sbjct: 125 LFRNVPSGVGSTGHLRLGFNELDEVLNRGVEWAVEAGFGWKRDIEHIEERGRMKTADAGK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+VDEIYD AA MGI +GQV +MIH+GSRG G
Sbjct: 185 VSKVAKQRGHEQLGTLGAGNHFLEIQVVDEIYDPEAAKTMGITRIGQVTLMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I+ DR+LA S E QDY K+M+A
Sbjct: 245 HQVAS--------------DYLMVMERAMRKYGIQVPDRELAALPFQSPEAQDYFKAMSA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P++L + +IYD++HNIAK EEH V+G++ ++V
Sbjct: 291 AANFAWANRQIITHWTRESFKQVFKRDPEELGIEIIYDIAHNIAKIEEHTVNGEKHRVVV 350
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP +
Sbjct: 351 HRKGATRAFPPGHPDI 366
>gi|159905664|ref|YP_001549326.1| hypothetical protein MmarC6_1281 [Methanococcus maripaludis C6]
gi|159887157|gb|ABX02094.1| protein of unknown function UPF0027 [Methanococcus maripaludis C6]
Length = 480
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+ W++ EGY W +D H EE+G+M ADP+
Sbjct: 123 IFKNVPSGLGSKGKIRITKDEIDNVLEEGVSWAVEEGYGWKKDITHIEEHGKMKEADPTL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA INS+EGQ Y K+M+
Sbjct: 242 HQICA--------------DYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M +IYDV+HNIAK E+H+VDG K ++V
Sbjct: 288 GANYAWANRQLITHWIRESFETVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVIV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|134045232|ref|YP_001096718.1| hypothetical protein MmarC5_0186 [Methanococcus maripaludis C5]
gi|132662857|gb|ABO34503.1| protein of unknown function UPF0027 [Methanococcus maripaludis C5]
Length = 480
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+ W++ EGY W D +H EE+G+M ADP+
Sbjct: 123 IFKNVPSGLGSKGKIRVTKDEIDNVLEEGVSWAVEEGYGWENDIKHIEEHGKMKEADPTL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA INS+EGQ Y K+M+
Sbjct: 242 HQICA--------------DYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M +IYDV+HNIAK E+H+VDG K ++V
Sbjct: 288 GANYAWANRQLITHWIRESFETVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVIV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|150402561|ref|YP_001329855.1| hypothetical protein MmarC7_0637 [Methanococcus maripaludis C7]
gi|150033591|gb|ABR65704.1| protein of unknown function UPF0027 [Methanococcus maripaludis C7]
Length = 480
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 163/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+ W++ EGY W D H EE+G+M ADP+
Sbjct: 123 IFKNVPSGLGSKGKIRITKDEIDNVLEEGVSWAVEEGYGWDRDINHIEEHGKMKEADPTL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ EIQ VDEI+D+ AA G+ QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEIQYVDEIFDEVAAKTFGVSP-EQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA INS+EGQ Y K+M+
Sbjct: 242 HQICA--------------DYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M +IYDV+HNIAK E+H+VDG K ++V
Sbjct: 288 GANYAWTNRQLITHWIRESFESVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVVV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|218884521|ref|YP_002428903.1| hypothetical protein DKAM_1210 [Desulfurococcus kamchatkensis
1221n]
gi|218766137|gb|ACL11536.1| protein of unknown function UPF0027 [Desulfurococcus kamchatkensis
1221n]
Length = 482
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 172/261 (65%), Gaps = 18/261 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS G + ++ +L++ L G++W++ G+ W D EH EE GRM +AD SK
Sbjct: 125 LFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKRDLEHIEENGRMKSADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+V+EIYD AA MGI +GQV +MIH+GSRG G
Sbjct: 185 VSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I+ DR+LA S E QDY K+M+A
Sbjct: 245 HQVAS--------------DYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P+ L + +IYDV+HNIAK EEH+V+G++ ++V
Sbjct: 291 AANFAWANRQIITHWTRESFKQVFKKDPEALGIEIIYDVAHNIAKIEEHVVNGERYKVVV 350
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P HP + + K
Sbjct: 351 HRKGATRAFPPGHPDIPGDYK 371
>gi|347523842|ref|YP_004781412.1| hypothetical protein Pyrfu_1301 [Pyrolobus fumarii 1A]
gi|343460724|gb|AEM39160.1| protein of unknown function UPF0027 [Pyrolobus fumarii 1A]
Length = 492
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 177/261 (67%), Gaps = 18/261 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P G+G G I ++ ++L + L+ G+ W+++ GY WA+D EH EE G AD SK
Sbjct: 135 LYRNVPSGLGKSGKIHLSIQELNKVLDEGVMWAVQRGYGWADDPEHIEERGSWTLADSSK 194
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLGTLG+GNH+ E+Q+VDEIYD A +GIE VGQV VMIH+GSRG G
Sbjct: 195 VSQRAKQRGAPQLGTLGSGNHFLEVQVVDEIYDPQIAKVLGIERVGQVMVMIHTGSRGLG 254
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I DR+LA +S+E QDYL++MAA
Sbjct: 255 HQVAS--------------DYLMIMERAMRKYGIRPPDRELASVPFSSREAQDYLRAMAA 300
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++F + + PD LD+H+IYDV+HNIAK EEH VDGK+ L+V
Sbjct: 301 AANYAWTNRQLITHWVRESFRRVLHVDPDKLDLHIIYDVAHNIAKIEEHEVDGKRMKLVV 360
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P HP + ++ +
Sbjct: 361 HRKGATRAFPPGHPEIPKDHR 381
>gi|45358955|ref|NP_988512.1| hypothetical protein MMP1392 [Methanococcus maripaludis S2]
gi|74553807|sp|Q6LXF9.1|RTCB_METMP RecName: Full=tRNA-splicing ligase RtcB
gi|45047821|emb|CAF30948.1| Protein of unknown function UPF0027 [Methanococcus maripaludis S2]
Length = 480
Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 163/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+ W++ E Y W D +H EE+G+M ADP+
Sbjct: 123 IFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKMKEADPTL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA INS+EGQ Y K+M+
Sbjct: 242 HQICA--------------DYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M +IYDV+HNIAK E+H+VDG K ++V
Sbjct: 288 GANYAWANRQLITHWIRESFESVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVVV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|340624702|ref|YP_004743155.1| hypothetical protein GYY_07790 [Methanococcus maripaludis X1]
gi|339904970|gb|AEK20412.1| hypothetical protein GYY_07790 [Methanococcus maripaludis X1]
Length = 480
Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 163/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+ W++ E Y W D +H EE+G+M ADP+
Sbjct: 123 IFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKMKEADPTL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA INS+EGQ Y K+M+
Sbjct: 242 HQICA--------------DYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M +IYDV+HNIAK E+H+VDG K ++V
Sbjct: 288 GANYAWANRQLITHWIRESFETVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVVV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|327400874|ref|YP_004341713.1| hypothetical protein Arcve_0987 [Archaeoglobus veneficus SNP6]
gi|327316382|gb|AEA46998.1| protein of unknown function UPF0027 [Archaeoglobus veneficus SNP6]
Length = 480
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 163/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + ++ ++L+E +G W++ GY W ED ++CEE+G + P
Sbjct: 123 LFVAVPSGVGSEGRLRVSDKELDEIFVVGAKWAIENGYGWKEDLDNCEEHGALAGGRPEV 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VD+IYD+ AA MG+E+ G V VMIH GSRG G
Sbjct: 183 VSRKARSRGKPQLGTLGSGNHFLEVQYVDKIYDEEAAKVMGLEE-GMVTVMIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +++A+K+ I DRQLACA I S+EGQDY MAA
Sbjct: 242 HQVCT--------------DFLEVLDRAVKKYGIRLPDRQLACAPIKSREGQDYFGGMAA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T R+ F K F + DDL+M ++YDV+HNIAK EEH+VDGK+K + V
Sbjct: 288 SANYAWCNRQIITHWVRETFEKIFGMSEDDLEMRLVYDVAHNIAKFEEHLVDGKKKKVCV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|390939017|ref|YP_006402755.1| hypothetical protein Desfe_1313 [Desulfurococcus fermentans DSM
16532]
gi|390192124|gb|AFL67180.1| protein of unknown function UPF0027 [Desulfurococcus fermentans DSM
16532]
Length = 482
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/261 (47%), Positives = 172/261 (65%), Gaps = 18/261 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS G + ++ +L++ L G++W++ G+ W +D EH EE GRM +AD SK
Sbjct: 125 LFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKKDLEHIEENGRMKSADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+V+EIYD AA MGI +GQV +MIH+GSRG G
Sbjct: 185 VSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I+ DR+LA S E QDY K+M+A
Sbjct: 245 HQVAS--------------DYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F + L + +IYDV+HNIAK EEH+V+G++ ++V
Sbjct: 291 AANFAWANRQIITHWTRESFKQVFKKDAETLGIEIIYDVAHNIAKIEEHVVNGERYKVVV 350
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P HP + + K
Sbjct: 351 HRKGATRAFPPGHPDIPGDYK 371
>gi|15921558|ref|NP_377227.1| hypothetical protein ST1292 [Sulfolobus tokodaii str. 7]
gi|15622344|dbj|BAB66336.1| hypothetical protein STK_12920 [Sulfolobus tokodaii str. 7]
Length = 483
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 168/250 (67%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P GVGS+G + ++ + L+ L G+ W++ GY W +D EH E++G ADPSK
Sbjct: 126 IYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVDNGYGWEKDMEHIEQHGSWDLADPSK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+VD+IYD A +GI GQV VM+H+GSRG G
Sbjct: 186 VSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTGSRGLG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+AMK+ NI DR+LA N++E QDY+ +MA+
Sbjct: 246 HQVAS--------------DYLQIMERAMKKYNITVPDRELAAIPFNTREAQDYIHAMAS 291
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR ++ R++F K F+ P+ LD+ +IYDV+HNIAK EE+ ++GK+K +LV
Sbjct: 292 AANFAWTNRQMISHWVRESFGKVFHVDPEKLDLSIIYDVAHNIAKIEEYDINGKRKKVLV 351
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 352 HRKGATRAFP 361
>gi|227827530|ref|YP_002829310.1| hypothetical protein M1425_1257 [Sulfolobus islandicus M.14.25]
gi|227830217|ref|YP_002831997.1| hypothetical protein LS215_1344 [Sulfolobus islandicus L.S.2.15]
gi|229584733|ref|YP_002843235.1| hypothetical protein M1627_1307 [Sulfolobus islandicus M.16.27]
gi|238619687|ref|YP_002914513.1| hypothetical protein M164_1241 [Sulfolobus islandicus M.16.4]
gi|284997640|ref|YP_003419407.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|227456665|gb|ACP35352.1| protein of unknown function UPF0027 [Sulfolobus islandicus
L.S.2.15]
gi|227459326|gb|ACP38012.1| protein of unknown function UPF0027 [Sulfolobus islandicus M.14.25]
gi|228019783|gb|ACP55190.1| protein of unknown function UPF0027 [Sulfolobus islandicus M.16.27]
gi|238380757|gb|ACR41845.1| protein of unknown function UPF0027 [Sulfolobus islandicus M.16.4]
gi|284445535|gb|ADB87037.1| protein of unknown function UPF0027 [Sulfolobus islandicus L.D.8.5]
Length = 482
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 168/247 (68%), Gaps = 14/247 (5%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E++G ADPSKVS
Sbjct: 128 NVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQHGSWELADPSKVSP 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
AK+RG QLGTLGAGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQV
Sbjct: 188 IAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQV 247
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L ME+AMK+ NI+ DR+LA S+EGQDY +MA+ AN
Sbjct: 248 AS--------------DYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGAN 293
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T R++F + F P+ LD++++YDV+HNIAK EE++++GK+K +LVHRK
Sbjct: 294 FAWTNRQLITHWTRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRK 353
Query: 244 VSEPSHP 250
+ + P
Sbjct: 354 GATRAFP 360
>gi|385773199|ref|YP_005645765.1| archaeal RNA splicing ligase [Sulfolobus islandicus HVE10/4]
gi|385775833|ref|YP_005648401.1| archaeal RNA splicing ligase [Sulfolobus islandicus REY15A]
gi|323474581|gb|ADX85187.1| archaeal RNA splicing ligase [Sulfolobus islandicus REY15A]
gi|323477313|gb|ADX82551.1| archaeal RNA splicing ligase [Sulfolobus islandicus HVE10/4]
Length = 482
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 168/247 (68%), Gaps = 14/247 (5%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E++G ADPSKVS
Sbjct: 128 NVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQHGSWELADPSKVSP 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
AK+RG QLGTLGAGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQV
Sbjct: 188 IAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQV 247
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L ME+AMK+ NI+ DR+LA S+EGQDY +MA+ AN
Sbjct: 248 AS--------------DYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGAN 293
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T R++F + F P+ LD++++YDV+HNIAK EE++++GK+K +LVHRK
Sbjct: 294 FAWTNRQLITHWTRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRK 353
Query: 244 VSEPSHP 250
+ + P
Sbjct: 354 GATRAFP 360
>gi|229579032|ref|YP_002837430.1| hypothetical protein YG5714_1242 [Sulfolobus islandicus Y.G.57.14]
gi|228009746|gb|ACP45508.1| protein of unknown function UPF0027 [Sulfolobus islandicus
Y.G.57.14]
Length = 482
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 168/247 (68%), Gaps = 14/247 (5%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E++G ADPSKVS
Sbjct: 128 NVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQHGSWELADPSKVSP 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
AK+RG QLGTLGAGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQV
Sbjct: 188 IAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQV 247
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L ME+AMK+ NI+ DR+LA S+EGQDY +MA+ AN
Sbjct: 248 AS--------------DYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGAN 293
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T R++F + F P+ LD++++YDV+HNIAK EE++++GK+K +LVHRK
Sbjct: 294 FAWTNRQLITHWTRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRK 353
Query: 244 VSEPSHP 250
+ + P
Sbjct: 354 GATRAFP 360
>gi|296242535|ref|YP_003650022.1| hypothetical protein Tagg_0797 [Thermosphaera aggregans DSM 11486]
gi|296095119|gb|ADG91070.1| protein of unknown function UPF0027 [Thermosphaera aggregans DSM
11486]
Length = 482
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 171/256 (66%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS G + ++ DLEE L G+ W++ G+ W D EH EE G M +AD SK
Sbjct: 125 LFRNVPSGVGSTGHLRLSFSDLEEVLNHGVKWAVEHGFGWERDMEHIEEKGSMKDADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+VDEIYD AA +GI VGQV +MIH+GSRG G
Sbjct: 185 VSRVAKQRGHEQLGTLGAGNHFLEIQVVDEIYDPEAAKVLGITRVGQVTLMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D LV ME+AM++ I+ DR+LA NS EGQDY K+MAA
Sbjct: 245 HQVAS--------------DYLVTMERAMRKYGIQVPDRELAAVPFNSPEGQDYFKAMAA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P+DL + +IYDV+HNIAK EEH+V+G++ ++V
Sbjct: 291 AANFAWTNRQIITHWVRESFKQVFKKPPEDLGLEIIYDVAHNIAKKEEHVVNGEKYRVVV 350
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP +
Sbjct: 351 HRKGATRAFPPGHPDI 366
>gi|229582217|ref|YP_002840616.1| hypothetical protein YN1551_1606 [Sulfolobus islandicus Y.N.15.51]
gi|228012933|gb|ACP48694.1| protein of unknown function UPF0027 [Sulfolobus islandicus
Y.N.15.51]
Length = 482
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 168/247 (68%), Gaps = 14/247 (5%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVGS+G + + ++ L++ L G+ W++ +G+ W ED H E++G ADPSKVS
Sbjct: 128 NVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQHGSWELADPSKVSP 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
AK+RG QLGTLGAGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQV
Sbjct: 188 IAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQV 247
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L ME+AMK+ NI+ DR+LA S+EGQDY +MA+ AN
Sbjct: 248 AS--------------DYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGAN 293
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T R++F + F P+ LD++++YDV+HNIAK EE++++GK+K +LVHRK
Sbjct: 294 FAWTNRQLITHWIRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRK 353
Query: 244 VSEPSHP 250
+ + P
Sbjct: 354 GATRAFP 360
>gi|70607076|ref|YP_255946.1| hypothetical protein Saci_1317 [Sulfolobus acidocaldarius DSM 639]
gi|449067315|ref|YP_007434397.1| hypothetical protein SacN8_06420 [Sulfolobus acidocaldarius N8]
gi|449069585|ref|YP_007436666.1| hypothetical protein SacRon12I_06410 [Sulfolobus acidocaldarius
Ron12/I]
gi|68567724|gb|AAY80653.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
gi|449035823|gb|AGE71249.1| hypothetical protein SacN8_06420 [Sulfolobus acidocaldarius N8]
gi|449038093|gb|AGE73518.1| hypothetical protein SacRon12I_06410 [Sulfolobus acidocaldarius
Ron12/I]
Length = 482
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 168/250 (67%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P GVGS+G + ++ + L+ L G+ W++ GY W D EH E+ G ADPSK
Sbjct: 125 IYRNVPSGVGSEGRVKLSYQQLDNVLSEGVKWAVDNGYGWNRDMEHIEQSGSWNLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+VD+IYD+ A +GI GQ+ VM+H+GSRG G
Sbjct: 185 VSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDEKVAKAIGITHEGQITVMVHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+AMK+ NI+ DR+LA N++E QDY+ +M++
Sbjct: 245 HQVAS--------------DYLQVMERAMKKYNIKVPDRELAAIPFNTREAQDYIHAMSS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + + P+ LD++++YDV+HNIAK EE+ +DGK+K +LV
Sbjct: 291 AANFAWTNRQMITHWARESFGRVYRIDPEKLDLNIVYDVAHNIAKIEEYDIDGKRKKVLV 350
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 351 HRKGATRAFP 360
>gi|146304515|ref|YP_001191831.1| hypothetical protein Msed_1752 [Metallosphaera sedula DSM 5348]
gi|145702765|gb|ABP95907.1| protein of unknown function UPF0027 [Metallosphaera sedula DSM
5348]
Length = 460
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 164/246 (66%), Gaps = 14/246 (5%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
+P GVGS+G I + ++L+ L+ G+ W++ +GY W+ED + E+ G ADPSKVS
Sbjct: 107 VPSGVGSEGRIKLTPQELDNLLQEGVKWAVDKGYGWSEDMNNIEQRGSWELADPSKVSQV 166
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AK+RG QLGTLGAGNH+ E+Q+VD+IYD+ A +GI GQV VM+H+GSRG GHQ+A
Sbjct: 167 AKQRGAAQLGTLGAGNHFLEVQVVDKIYDERIARALGITREGQVTVMVHTGSRGLGHQIA 226
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
+ D L ME+AMK+ IE DR+LA S+EGQDY ++M + ANF
Sbjct: 227 S--------------DYLQIMERAMKKYGIEVPDRELAAIPFESREGQDYFRAMVSGANF 272
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
AW NR +T R++F K F P+ LD+H++YDV+HNIAK EE+ + GK+K +LVHRK
Sbjct: 273 AWSNRQLITNWVRESFGKVFKVDPEKLDLHIVYDVAHNIAKIEEYDIGGKRKKVLVHRKG 332
Query: 245 SEPSHP 250
+ + P
Sbjct: 333 ATRAFP 338
>gi|330834340|ref|YP_004409068.1| hypothetical protein Mcup_0477 [Metallosphaera cuprina Ar-4]
gi|329566479|gb|AEB94584.1| conserved hypothetical protein [Metallosphaera cuprina Ar-4]
Length = 460
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 168/250 (67%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS+ + +++++L+ L+ G+ W++ +GY W +D + E+ G ADP+K
Sbjct: 103 IYNSVPSGVGSESKVKLSSQELDNLLQEGVRWTIDKGYGWKDDMNNIEQNGSWELADPTK 162
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ E+Q+VD+IYD+ A +G+ GQV VMIH+GSRG G
Sbjct: 163 VSQVAKQRGASQLGTLGAGNHFLEVQVVDKIYDERIAKALGVTREGQVTVMIHTGSRGLG 222
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A+ D L ME+AMK+ I DR+LA NS+EGQDY ++M A
Sbjct: 223 HQIAS--------------DYLQIMERAMKKYGINIPDRELAAIPFNSREGQDYFRAMVA 268
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFAW NR +T R++F K F + P+ LD+H+IYDV+HNIAK EE+ V+ K+K LLV
Sbjct: 269 GANFAWSNRQLITNWVRESFGKVFKSDPEKLDLHIIYDVAHNIAKIEEYEVERKRKKLLV 328
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 329 HRKGATRAFP 338
>gi|284161915|ref|YP_003400538.1| hypothetical protein Arcpr_0802 [Archaeoglobus profundus DSM 5631]
gi|284011912|gb|ADB57865.1| protein of unknown function UPF0027 [Archaeoglobus profundus DSM
5631]
Length = 961
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 167/259 (64%), Gaps = 19/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + ++ R+L E L G W++ GY + +D EHCEE G M A P
Sbjct: 604 LFVAVPSGVGSEGRLRVSDRELNEILVEGARWAVENGYGYEKDLEHCEENGAMEGAKPEV 663
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A++RG PQLGTLG+GNH+ E+Q V++IYD+ A MG+E+ G V VM+H GSRG G
Sbjct: 664 VSRTARERGKPQLGTLGSGNHFLEVQYVEKIYDEECAKAMGLEE-GMVTVMVHCGSRGLG 722
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D LV +++A+++ I+ DRQLACA INSKEGQDY MAA
Sbjct: 723 HQVCS--------------DFLVVLDRAVRKYGIKLPDRQLACAPINSKEGQDYFGGMAA 768
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T R+ F K F + DDL M ++YDV+HNIAK E H VDGK+ L V
Sbjct: 769 SANYAWCNRQIITHWVRETFQKVFRMSEDDLGMELVYDVAHNIAKFETHKVDGKKMKLCV 828
Query: 241 HRKVSE----PSHPGVSRN 255
HRK + P HP + ++
Sbjct: 829 HRKGATRAFGPGHPDIPKD 847
>gi|333910563|ref|YP_004484296.1| hypothetical protein [Methanotorris igneus Kol 5]
gi|333751152|gb|AEF96231.1| protein of unknown function UPF0027 [Methanotorris igneus Kol 5]
Length = 480
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 165/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + ++++ LE G W++ EGY W ED + EE+G M +AD S
Sbjct: 123 IFKNVPSGLGSKGKIRITKNEIDDVLEEGAKWAINEGYGWDEDIKFLEEHGCMRDADASL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ EIQ VD+++D+ A GIE+ QV VM+H+GSRG G
Sbjct: 183 VSDSAKKRGLPQLGSLGSGNHFLEIQYVDKVFDEETAEVFGIEE-NQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D + MEKA K+ I+ DRQLACA I S+EG +Y K+M
Sbjct: 242 HQICA--------------DYIRVMEKAAKKYGIKLPDRQLACAPIESEEGIEYYKAMCC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F K F T+ +DL+M++IYDV+HNIAK EEH++DGK K ++V
Sbjct: 288 GANYAWANRQMITHWVRESFEKVFKTSAEDLEMNIIYDVAHNIAKIEEHVIDGKTKKVVV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|386875104|ref|ZP_10117300.1| hypothetical protein BD31_I1255 [Candidatus Nitrosopumilus salaria
BD31]
gi|386807089|gb|EIJ66512.1| hypothetical protein BD31_I1255 [Candidatus Nitrosopumilus salaria
BD31]
Length = 482
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 169/250 (67%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + + +L+E L G++W++ GY + D + CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLTHSELDEVLVNGVNWAIEHGYGSSNDSDVCEENGQIKNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ E+Q V EI+D+ AA++MGI++ G + V+IH GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEVQKVAEIHDEEAANRMGIKE-GTITVLIHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E+AM++ NI DR+LAC S+EG+ Y K+M A
Sbjct: 244 HQVCS--------------DYLRVSEQAMEKYNIHLPDRELACVPNTSEEGESYRKAMFA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R +F + FN + DLDM ++YDV+HNIAK E+H VDGK++ L++
Sbjct: 290 ALNFAWSNRQMITHWTRNSFERVFNQSESDLDMKLVYDVAHNIAKVEKHKVDGKERKLVI 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|329766488|ref|ZP_08258032.1| hypothetical protein Nlim_1842 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137087|gb|EGG41379.1| hypothetical protein Nlim_1842 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 482
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 171/250 (68%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + ++ L+E L G++W++ GY ++D CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLSHSQLDEVLVRGVNWAIDNGYGSSDDANVCEENGQIKNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ E+Q V EI+D+ AA++MGI++ G + ++IH GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAANRMGIKE-GTITILIHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E++M++ NI DR+LAC S+EG+ Y K+M A
Sbjct: 244 HQVCS--------------DYLRVSEQSMEKYNIHLADRELACVPNTSEEGESYRKAMFA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R++F + FN T DLDM+++YDV+HNIAK E+H V+GK++ L+V
Sbjct: 290 ALNFAWSNRQMITHWTRKSFERVFNQTESDLDMNLVYDVAHNIAKVEKHKVEGKERKLVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|393796771|ref|ZP_10380135.1| hypothetical protein CNitlB_10734 [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 482
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 171/250 (68%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + ++ L+E L G++W++ GY ++D CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLSHSQLDEVLVRGVNWAIDNGYGSSDDANVCEENGQIKNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ E+Q V EI+D+ AA++MGI++ G + ++IH GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAANRMGIKE-GTITILIHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E++M++ NI DR+LAC S+EG+ Y K+M A
Sbjct: 244 HQVCS--------------DYLRVSEQSMEKYNIHLADRELACVPNTSEEGESYRKAMFA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R++F + FN T DLDM+++YDV+HNIAK E+H V+GK++ L+V
Sbjct: 290 ALNFAWSNRQMITHWTRKSFERVFNQTESDLDMNLVYDVAHNIAKVEKHKVEGKERKLVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|407463077|ref|YP_006774394.1| hypothetical protein NKOR_07955 [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046699|gb|AFS81452.1| hypothetical protein NKOR_07955 [Candidatus Nitrosopumilus
koreensis AR1]
Length = 482
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 171/250 (68%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + ++ +L+E L G++W++ GY + D + CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLSHSELDEVLVKGVNWAIDHGYGSSNDSDVCEENGQIQNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ EIQ V EI+D+ AA+KMGI++ G + V+IH GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEIQKVTEIHDEEAAAKMGIKE-GTITVLIHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E+AM + I+ DR+LAC +S+EG+ Y K+M A
Sbjct: 244 HQVCS--------------DYLRVSEQAMGKYGIDLPDRELACVPNSSEEGESYRKAMFA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R++F + FN T DLDM ++YDV+HNIAK E+H V+G+++ L+V
Sbjct: 290 ALNFAWSNRQMITHWTRKSFERVFNQTESDLDMKLVYDVAHNIAKVEKHKVNGEERKLVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|150400572|ref|YP_001324338.1| hypothetical protein Maeo_0134 [Methanococcus aeolicus Nankai-3]
gi|150013275|gb|ABR55726.1| protein of unknown function UPF0027 [Methanococcus aeolicus
Nankai-3]
Length = 963
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 162/243 (66%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I +N +EE LE G++W++ Y W ED ++ EE G+M AD S
Sbjct: 606 IFKNVPSGLGSKGKIRINKNQIEEVLEEGVNWAINNNYGWEEDIKYIEENGQMKEADASL 665
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ EIQ +D ++D+ A G+E QV ++IH+GSRG G
Sbjct: 666 VSDSAKKRGLPQLGSLGSGNHFLEIQYMDTVFDEEVAKIYGVEK-NQVVILIHTGSRGLG 724
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L MEKA ++ NI DRQLACA I S+EGQ+Y K+M+
Sbjct: 725 HQICA--------------DYLRYMEKAARKYNITLPDRQLACAPITSEEGQNYFKAMSC 770
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M+++YDV+HNIAK E H ++GK K ++V
Sbjct: 771 GANYAWTNRQLITHWIRESFEDIFKTSAEDLEMNILYDVAHNIAKKENHTINGKMKKVVV 830
Query: 241 HRK 243
HRK
Sbjct: 831 HRK 833
>gi|206900493|ref|YP_002251661.1| RtcB protein [Dictyoglomus thermophilum H-6-12]
gi|206739596|gb|ACI18654.1| RtcB protein [Dictyoglomus thermophilum H-6-12]
Length = 486
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 164/250 (65%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP GVGS+G + + ++L+E LE G W++++GY W ED EH EE GR++ A+P K
Sbjct: 128 LFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWKEDLEHIEERGRLIYANPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLGTLG+GNH+ E+Q+V I++ A K+G+ Q+ VM+H+GSRG G
Sbjct: 188 VSKKAKERGEFQLGTLGSGNHFLEVQVVSRIFEPEIADKLGLFP-DQIVVMVHTGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA D + M+ AMK+ IE D QLACA +S EGQDY +M A
Sbjct: 247 HQVAE--------------DYIRVMKGAMKKYGIEVPDIQLACAPFDSPEGQDYFSAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R+ F + F + + L M +IYDV+HNIAK EEH VDGK + ++V
Sbjct: 293 AANFAWANRQMITHWVREVFEEIFRESAESLGMKLIYDVAHNIAKLEEHDVDGKLEEVVV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|407465449|ref|YP_006776331.1| hypothetical protein NSED_07985 [Candidatus Nitrosopumilus sp. AR2]
gi|407048637|gb|AFS83389.1| hypothetical protein NSED_07985 [Candidatus Nitrosopumilus sp. AR2]
Length = 482
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 167/250 (66%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + + +L+E L G++W++ GY ++D + CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLTHSELDEVLVKGVNWAIDHGYGSSDDADVCEENGQIQNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ E+Q V EI+D+ AA +MGIE+ G + +IH GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAAKRMGIEE-GTITTLIHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E+AM++ I DR+LAC NS+EG+ Y K+M +
Sbjct: 244 HQVCS--------------DYLRVSEQAMEKYGINLPDRELACVPNNSEEGESYRKAMFS 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R +F + FN + DL+M ++YDV+HNIAK E+H VDGK + L+V
Sbjct: 290 ALNFAWSNRQMLTHWTRNSFQRVFNQSESDLEMKLVYDVAHNIAKVEKHKVDGKDRNLVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|217966567|ref|YP_002352073.1| hypothetical protein Dtur_0127 [Dictyoglomus turgidum DSM 6724]
gi|217335666|gb|ACK41459.1| protein of unknown function UPF0027 [Dictyoglomus turgidum DSM
6724]
Length = 486
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 163/250 (65%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP GVGS+G + + ++L+E LE G W++++GY W ED EH EE GR+ ADP K
Sbjct: 128 LFDKIPAGVGSEGDLRVKGKELDEVLEKGAQWAVKQGYGWREDLEHIEERGRLSYADPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLGTLG+GNH+ E+Q+V I++ A K+G+ QV VM+H+GSRG G
Sbjct: 188 VSKKAKERGEFQLGTLGSGNHFLEVQVVSRIFEPDIADKLGLFP-DQVVVMVHTGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA D + M+ AMK+ IE D QLACA +S EGQDY +M A
Sbjct: 247 HQVAE--------------DYIRIMKNAMKKYGIEVPDIQLACAPFDSPEGQDYFSAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R+ F + F + + L M +IYDV+HNIAK EEH +DGK + ++V
Sbjct: 293 AANFAWANRQMITHWVREVFEEIFRESAESLGMKLIYDVAHNIAKLEEHDIDGKLEEVIV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|15897845|ref|NP_342450.1| hypothetical protein SSO0966 [Sulfolobus solfataricus P2]
gi|284175654|ref|ZP_06389623.1| hypothetical protein Ssol98_13500 [Sulfolobus solfataricus 98/2]
gi|384434399|ref|YP_005643757.1| hypothetical protein [Sulfolobus solfataricus 98/2]
gi|13814148|gb|AAK41240.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602553|gb|ACX92156.1| protein of unknown function UPF0027 [Sulfolobus solfataricus 98/2]
Length = 482
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 164/247 (66%), Gaps = 14/247 (5%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVGS+G + + + L++ L G+ W++ +G+ W ED H E+ G ADPSKVS
Sbjct: 128 NVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQRGSWELADPSKVSP 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
AK+RG QLGTLGAGNH+ EIQ+VD+I+D A +G++ GQV VM+H+GSRG GHQV
Sbjct: 188 IAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGSRGLGHQV 247
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L ME+AMK+ NI+ DR+LA S+EGQDY +MA+ AN
Sbjct: 248 AS--------------DYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGAN 293
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T R++F + F P+ LD+ ++YDV+HNIAK EE+++ G++K +LVHRK
Sbjct: 294 FAWTNRQLITHWTRESFGRVFGVDPEKLDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRK 353
Query: 244 VSEPSHP 250
+ + P
Sbjct: 354 GATRAFP 360
>gi|223478114|ref|YP_002582576.1| protein RtcB [Thermococcus sp. AM4]
gi|214033340|gb|EEB74167.1| Protein RtcB [Thermococcus sp. AM4]
Length = 960
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 166/258 (64%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W ED EH EE GRM ADP+
Sbjct: 603 LFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGADPNA 662
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+IYD+ A G+ + GQV VM+H+GSRG G
Sbjct: 663 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIYDEEIAKAYGLFE-GQVVVMVHTGSRGLG 721
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ I DR+L S+EGQ Y +M A
Sbjct: 722 HQVAS--------------DYLRIMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKA 767
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++MH++YDV+HNIAK EEH VDG++ ++V
Sbjct: 768 AANFAWANRQMITHWVRESFEEVFRRKAEDMEMHIVYDVAHNIAKVEEHEVDGRKVKVVV 827
Query: 241 HRKVSEPS----HPGVSR 254
HRK + + HP V R
Sbjct: 828 HRKGATRAFPAGHPDVPR 845
>gi|256810568|ref|YP_003127937.1| hypothetical protein Mefer_0616 [Methanocaldococcus fervens AG86]
gi|256793768|gb|ACV24437.1| protein of unknown function UPF0027 [Methanocaldococcus fervens
AG86]
Length = 480
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 170/261 (65%), Gaps = 19/261 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKGI+ + +++ LE G+ W++REGY W ED E EE+G + +AD S
Sbjct: 123 LFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVREGYGWEEDLEFIEEHGCLKDADASY 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLG+LG+GNH+ E+Q V++++D+ AA G+E+ QV VM+H+GSRG G
Sbjct: 183 VSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEVFGVEE-NQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L MEKA K I+ DRQLACA S+EGQ Y K+M
Sbjct: 242 HQICT--------------DYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F + F +DL+M ++YDV+HNIAK EEH+VDG++ ++V
Sbjct: 288 GANYAWANRQMITHWVRESFEEVFGINAEDLEMSIVYDVAHNIAKKEEHIVDGRKVNVIV 347
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P HP + + K
Sbjct: 348 HRKGATRAFSPKHPQIPKEYK 368
>gi|118576264|ref|YP_876007.1| hypothetical protein CENSYa_1073 [Cenarchaeum symbiosum A]
gi|118194785|gb|ABK77703.1| conserved hypothetical protein [Cenarchaeum symbiosum A]
Length = 459
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + ++ L+E L G+ W+++ GY D + CEE GRM ADP K
Sbjct: 102 LFSSIPSGVGSKGAVRLDRAQLDEVLTGGVGWAVKNGYGNRNDADACEEGGRMDGADPGK 161
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S RA+KRG+PQLG+LG+GNH+ E+Q VDEI+D+ AAS+MGIE GQV ++ H GSRGFG
Sbjct: 162 ISDRARKRGMPQLGSLGSGNHFLEVQRVDEIHDEEAASRMGIEK-GQVTILTHCGSRGFG 220
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E+A + NI DR+LAC +S+EG+ Y +MAA
Sbjct: 221 HQVCS--------------DYLRTSERATSKYNISLKDRELACVPNHSEEGESYRGAMAA 266
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR ++ R F + + +DL M ++YDVSHNIAK E H +DGK+K ++V
Sbjct: 267 ALNFAWCNRQMISHWTRATFERVMGMSAEDLGMDLVYDVSHNIAKVERHRIDGKEKDVVV 326
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 327 HRKGATRAFP 336
>gi|226955334|gb|ACO95330.1| hypothetical protein [Dasypus novemcinctus]
Length = 442
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/125 (86%), Positives = 118/125 (94%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVAT 125
HQVAT
Sbjct: 267 HQVAT 271
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 4/57 (7%)
Query: 201 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHPGVS 253
A FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRK S P HP ++
Sbjct: 270 ATVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIA 326
>gi|297619486|ref|YP_003707591.1| hypothetical protein Mvol_0961 [Methanococcus voltae A3]
gi|297378463|gb|ADI36618.1| protein of unknown function UPF0027 [Methanococcus voltae A3]
Length = 480
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 164/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I ++ ++ LE G++W+++EGY +D E EE GRM AD S
Sbjct: 123 IFTNVPSGLGSKGKIRLDNNQIDTVLEEGVEWAIKEGYGTKKDLERIEENGRMKEADASF 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRG PQLG+LG+GNH+ EIQ VDEI+++ A G+E Q+ +M+H+GSRG G
Sbjct: 183 VSESAKKRGKPQLGSLGSGNHFLEIQYVDEIFNEETAKVYGVEK-DQLMIMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L +ME A K+ NI+ DRQLACA INS+EG+ Y K+M+
Sbjct: 242 HQICA--------------DYLRRMENATKKYNIKIPDRQLACAPINSEEGEAYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R+AF K F + +++ M ++YDV+HNIAK E H+VDGK+K+++V
Sbjct: 288 GANYAWANRQLITHWVREAFEKVFKNSYENMGMEIVYDVAHNIAKKETHIVDGKEKSVIV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|170291020|ref|YP_001737836.1| hypothetical protein Kcr_1407 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175100|gb|ACB08153.1| protein of unknown function UPF0027 [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 485
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 164/261 (62%), Gaps = 18/261 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+++P G+GS G + ++ L++ + MG W++ +GY W D EHCEE G M ADP
Sbjct: 127 LFENVPSGLGSSGKVRLSPGQLDDVIVMGAKWAVEQGYGWERDLEHCEEGGMMEGADPGV 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK+RGLPQLG+LG+GNH+ E+Q+VD IYD+ AA MGIE GQV M+H+GSRGFG
Sbjct: 187 ISRKAKERGLPQLGSLGSGNHFLEVQVVDRIYDEGAARVMGIEHEGQVVAMVHTGSRGFG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA D L M + N + D++L A NS + Y K+M
Sbjct: 247 HQVAD--------------DFLNIMMSKISSLNFKLPDKELIFAYANSDIAEKYFKAMKG 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R+AF + F + +DL M++IYDV+HNIAK EEH VDG++ + V
Sbjct: 293 AANYAWANRQMITHWVREAFERVFGRSAEDLRMNLIYDVAHNIAKLEEHEVDGRRVKVYV 352
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P HP + ++ +
Sbjct: 353 HRKGATRSFPPGHPAIPQDYR 373
>gi|340345470|ref|ZP_08668602.1| RNA terminal phosphate cyclase [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520611|gb|EGP94334.1| RNA terminal phosphate cyclase [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 482
Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 169/250 (67%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + ++ L+E L G+DW++ G+ D + CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLSHSQLDEVLVRGVDWAIDNGFGSTHDADVCEENGQIKNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ E+Q V EI+D+ AA +MGI++ G + ++IH GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEVQKVAEIHDEEAAKRMGIKE-GTITILIHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E++M++ +I DR+LAC S+EG+ Y K+M A
Sbjct: 244 HQVCS--------------DYLRISEQSMEKYDITLADRELACVPNTSEEGESYRKAMFA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R++F + FN + DL+M+++YDV+HNIAK E+H VDGK++ L+V
Sbjct: 290 ALNFAWSNRQMITHWTRKSFERVFNQSESDLEMNLVYDVAHNIAKVEKHKVDGKERKLVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|161528961|ref|YP_001582787.1| hypothetical protein Nmar_1453 [Nitrosopumilus maritimus SCM1]
gi|160340262|gb|ABX13349.1| protein of unknown function UPF0027 [Nitrosopumilus maritimus SCM1]
Length = 482
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 168/250 (67%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGSKG + ++ +L+E L G++W++ GY D + CEE G++ NADP+K
Sbjct: 125 LFSSIPSGVGSKGAVKLSHSELDEVLVNGVNWAIDHGYGSTNDSDVCEENGQIKNADPNK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLG+LG+GNH+ EIQ V E++D+ AA KMGI++ G + V++H GSRGFG
Sbjct: 185 VSDKARKRGAPQLGSLGSGNHFLEIQKVAEVHDEEAAEKMGIKE-GTITVLVHCGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L E+AM + +I DR+LAC S+EG+ Y K+M A
Sbjct: 244 HQVCS--------------DYLRVSEQAMSKYDITLPDRELACVPNTSEEGESYRKAMFA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW NR +T R++F + FN + DLDM ++YDV+HNIAK E+H V+G+++ L+V
Sbjct: 290 ALNFAWSNRQMITHWTRKSFERVFNQSESDLDMKLVYDVAHNIAKVEKHKVNGEERKLVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|206896085|ref|YP_002246985.1| replication factor C subunit [Coprothermobacter proteolyticus DSM
5265]
gi|206738702|gb|ACI17780.1| replication factor C subunit [Coprothermobacter proteolyticus DSM
5265]
Length = 477
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 123/250 (49%), Positives = 165/250 (66%), Gaps = 16/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVGS+G I ++ R+L++ LEMG W++ +GY ED E E G++ AD SK
Sbjct: 121 LYKEVPSGVGSEGFIKLSVRELDKVLEMGAKWAVEQGYGTFEDLERLESQGQLKGADASK 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RGL QLGTLG+GNH+ E+Q VDEI+D+ A +MG+ +GQV +M+H+GSRG G
Sbjct: 181 VSKRAKERGLEQLGTLGSGNHFLEVQKVDEIFDEAVAKQMGL-SLGQVTIMLHTGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M KA K+ I+ D+QLA A S+EGQDY +M
Sbjct: 240 HQVAT--------------DYIDVMLKASKKYGIKLVDKQLAAAPFKSEEGQDYWAAMQC 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R+AFAK F D + VIYDV+HNIAK E+HMVDG ++ ++V
Sbjct: 286 AANFAWANRQVITDYIRKAFAKVFGNEIKD-KITVIYDVAHNIAKLEKHMVDGMEREVVV 344
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 345 HRKGATRSFP 354
>gi|73668781|ref|YP_304796.1| hypothetical protein Mbar_A1252 [Methanosarcina barkeri str.
Fusaro]
gi|72395943|gb|AAZ70216.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 500
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 164/256 (64%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVGSK I + ++L+ A G +W++ GY D +HCE G M ADP++
Sbjct: 143 LFSNIPAGVGSKSRIRASDQELDSAFLEGANWAVEAGYGVEADVKHCEANGYMEGADPAQ 202
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLGTLG+GNH+ E+Q VD+IYD+ AS G+++ GQV VMIH GSRG G
Sbjct: 203 VSAKARKRGKPQLGTLGSGNHFLEVQYVDKIYDQEIASTFGLQE-GQVTVMIHCGSRGAG 261
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L ++ +A+K IE D+QLACA S+E Q+Y K+M
Sbjct: 262 HQICT--------------DHLKELSQAVKNYKIEIPDKQLACAPAQSREAQNYFKAMLC 307
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++F F DDL M ++YDV+HN+AK E+H+VDGK+K + V
Sbjct: 308 AANYAWANRQIITHWTRESFENVFGRDADDLGMDLLYDVAHNVAKLEKHLVDGKKKEVYV 367
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP V
Sbjct: 368 HRKGATRAFPPGHPEV 383
>gi|11498468|ref|NP_069696.1| hypothetical protein AF0862 [Archaeoglobus fulgidus DSM 4304]
gi|74513477|sp|O29399.1|RTCB_ARCFU RecName: Full=tRNA-splicing ligase RtcB
gi|2649735|gb|AAB90372.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 482
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 158/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + ++ R+L+E G W++ GY + D +HCEE G + A P
Sbjct: 125 LFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAVENGYGYERDLKHCEEEGALEGARPEV 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VD+++D+ A+K GIE+ G V VMIH GSRG G
Sbjct: 185 VSKKARDRGRPQLGTLGSGNHFLEVQYVDKVFDEKVAAKFGIEE-GMVTVMIHCGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +++A+K+ I+ DRQLACA INSKEGQDY MAA
Sbjct: 244 HQVCT--------------DFLEVLDRAVKKYGIKLPDRQLACAPINSKEGQDYFAGMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR + R+ F K + DDL M ++YDV+HNIAK EEH VDGK+ L V
Sbjct: 290 SANYAWCNRQIIAHWVRETFQKVMGMSEDDLGMELVYDVAHNIAKFEEHRVDGKKMKLCV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|289192965|ref|YP_003458906.1| protein of unknown function UPF0027 [Methanocaldococcus sp.
FS406-22]
gi|288939415|gb|ADC70170.1| protein of unknown function UPF0027 [Methanocaldococcus sp.
FS406-22]
Length = 969
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 166/250 (66%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E EE+G + +AD S
Sbjct: 612 LFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIEEHGCLKDADASY 671
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLG+LG+GNH+ E+Q V++++D+ AA GIE+ QV VM+H+GSRG G
Sbjct: 672 VSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEVFGIEE-NQVVVMVHTGSRGLG 730
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L MEKA K I+ DRQLACA S+EGQ Y K+M
Sbjct: 731 HQICT--------------DYLRTMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCC 776
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F + F +DL+M ++YDV+HNIAK EEH++DG++ ++V
Sbjct: 777 GANYAWANRQMITHWVRESFEEVFKIHAEDLEMGIVYDVAHNIAKKEEHIIDGRKVKVIV 836
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 837 HRKGATRAFP 846
>gi|336122113|ref|YP_004576888.1| hypothetical protein Metok_1141 [Methanothermococcus okinawensis
IH1]
gi|334856634|gb|AEH07110.1| protein of unknown function UPF0027 [Methanothermococcus
okinawensis IH1]
Length = 480
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 162/243 (66%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++E LE G++W++ Y W DK++ EE G + AD S
Sbjct: 123 LFKNVPSGLGSKGKIRITKNEIDEVLEEGVNWAIDNNYGWKVDKKYIEENGCVKEADASL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ EIQ VD+I+D+ AA G+E QV VMIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEIQYVDKIFDEEAAKVYGVEK-NQVLVMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L MEKA K+ NI DRQLACA I S+EG Y K+M
Sbjct: 242 HQICS--------------DYLRYMEKASKKYNIHLPDRQLACAPITSEEGIRYFKAMNC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F + F T +DL+M+++YDV+HNIAK E+H ++GK K ++V
Sbjct: 288 GANYAWTNRQLITHWVRESFEEVFKTPAEDLEMNILYDVAHNIAKKEKHKINGKLKNVIV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|167380803|ref|XP_001735457.1| hypothetical protein [Entamoeba dispar SAW760]
gi|327488450|sp|B0EAV2.1|RTCB1_ENTDS RecName: Full=tRNA-splicing ligase RtcB homolog 1
gi|165902544|gb|EDR28341.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 535
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 153/261 (58%), Gaps = 21/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG+K I + D + + G+++ ++ GY W ED HCEE+G++ NADPS
Sbjct: 180 LFKQIPSGVGTKAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEHGKIANADPSL 239
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG Q+GTLG+GNHY E+Q+VDEI D AA MGI +VGQVC+M+H GSRG G
Sbjct: 240 VSKSAKSRGYKQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGINEVGQVCIMVHCGSRGLG 299
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C Y+ + MK D+QL NS GQ Y +M
Sbjct: 300 HQV---------CQDYI--------DLCMKSGICNPIDKQLTGVPFNSPIGQQYYSAMNC 342
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFA+ NR +T+ RQAF P +DMH++YDV HNIAK EEH VD K+ +V
Sbjct: 343 CANFAFANRGMITYRIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHEVDNKKVQCIV 402
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP +S + K
Sbjct: 403 HRKGATRAFPPQHPDISEDYK 423
>gi|389860621|ref|YP_006362861.1| hypothetical protein TCELL_0298 [Thermogladius cellulolyticus 1633]
gi|388525525|gb|AFK50723.1| hypothetical protein TCELL_0298 [Thermogladius cellulolyticus 1633]
Length = 482
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 169/254 (66%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS G I ++ R+L+E L G++W++ +G+ W ED E+ EE+G AD SK
Sbjct: 125 LFRNVPSGVGSTGKIRLSTRELDEVLNRGVEWAVEKGFGWKEDMEYIEEHGSWRMADSSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLGAGNH+ EIQ+VD IY+ A +G + VGQV VMIH+GSRG G
Sbjct: 185 VSNVAKQRGHEQLGTLGAGNHFLEIQVVDHIYNPDIAKVLGFDHVGQVAVMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM+R I DR+LA S EGQDY K+MAA
Sbjct: 245 HQVAS--------------DYLIIMERAMRRYGISVPDRELAAVPFKSNEGQDYFKAMAA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P++L +H++YDV+HNIAK EEH+++ K+ ++V
Sbjct: 291 AANFAWTNRQLITHWTRESFKEVFKKDPEELGLHIVYDVAHNIAKIEEHVINNKRYKVVV 350
Query: 241 HRKVS----EPSHP 250
HRK + P HP
Sbjct: 351 HRKGATRAFPPGHP 364
>gi|410671521|ref|YP_006923892.1| hypothetical protein Mpsy_2320 [Methanolobus psychrophilus R15]
gi|409170649|gb|AFV24524.1| hypothetical protein Mpsy_2320 [Methanolobus psychrophilus R15]
Length = 488
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 160/254 (62%), Gaps = 19/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP GVGSK I ++ +L+E G+ W++ GY D ++CE G++ ADPSK
Sbjct: 131 LFEAIPTGVGSKSRIRVSDAELDEIFVNGVQWAVDNGYGVKADVDNCESAGKISGADPSK 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS++A+KRG PQLGTLG+GNH+ E+Q VD+IYD+ AAS G+ + GQ+ MIH GSRG G
Sbjct: 191 VSIKARKRGRPQLGTLGSGNHFLEVQYVDKIYDEEAASAFGLRE-GQIAFMIHCGSRGAG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L + +A K+ NI D+QLACA S E QDY K+M
Sbjct: 250 HQICT--------------DHLQVLTQASKKYNITLPDKQLACAPAQSPEAQDYFKAMLC 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNR + R+ F K F DL MH++YDV+HNIAK EEH VDGK+ + V
Sbjct: 296 AANYAWVNRHVIMHWTREVFEKTFAEEFGDLGMHLVYDVAHNIAKLEEHNVDGKKTEVYV 355
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 356 HRKGATRAFAPGHP 369
>gi|15668863|ref|NP_247666.1| hypothetical protein MJ_0682 [Methanocaldococcus jannaschii DSM
2661]
gi|2501617|sp|Q58095.1|RTCB_METJA RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Mja hyp2 intein
gi|1591397|gb|AAB98677.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 968
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 167/250 (66%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E EE+G + +AD S
Sbjct: 611 LFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIEEHGCLKDADASY 670
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLG+LG+GNH+ E+Q V++++D+ AA GIE+ QV V++H+GSRG G
Sbjct: 671 VSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEIYGIEE-NQVVVLVHTGSRGLG 729
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L MEKA K I+ DRQLACA S+EGQ Y K+M
Sbjct: 730 HQICT--------------DYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCC 775
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F + F +DL+M+++YDV+HNIAK EEH++DG++ ++V
Sbjct: 776 GANYAWANRQMITHWVRESFEEVFKIHAEDLEMNIVYDVAHNIAKKEEHIIDGRKVKVIV 835
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 836 HRKGATRAFP 845
>gi|254167923|ref|ZP_04874772.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
gi|289596641|ref|YP_003483337.1| protein of unknown function UPF0027 [Aciduliprofundum boonei T469]
gi|197623214|gb|EDY35780.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
gi|289534428|gb|ADD08775.1| protein of unknown function UPF0027 [Aciduliprofundum boonei T469]
Length = 484
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 158/243 (65%), Gaps = 14/243 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG KG + +N +L + L+ G W++ GY W ED E EE G + AD +K
Sbjct: 125 IFMNVPSGVGEKGKLRLNFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSIKFADHTK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG PQLGTLGAGNH+ E+Q V++I+ A K GI GQ+ VMIH+GSRG G
Sbjct: 185 VSDKAKKRGAPQLGTLGAGNHFLEVQRVEKIFLPEIAKKFGITHEGQITVMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D + ME+A ++ I+ D QLACA + SKE +DY +M+A
Sbjct: 245 HQVAS--------------DYIRVMEQAARKYGIKLVDPQLACAPVKSKEAEDYFAAMSA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANF + NR +T R++F K F P+DL MH++Y V+HNIAK EEH+VDGK+ + V
Sbjct: 291 AANFGFTNRQLITHWVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHIVDGKRMKVYV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|254167887|ref|ZP_04874736.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
gi|197623178|gb|EDY35744.1| Uncharacterized protein family UPF0027 [Aciduliprofundum boonei
T469]
Length = 484
Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 158/243 (65%), Gaps = 14/243 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG KG + +N +L + L+ G W++ GY W ED E EE G + AD +K
Sbjct: 125 IFMNVPSGVGEKGKLRLNFGELNKVLDFGAKWAVENGYGWEEDLERLEEGGSIKFADHTK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG PQLGTLGAGNH+ E+Q V++I+ A K GI GQ+ VMIH+GSRG G
Sbjct: 185 VSDKAKKRGAPQLGTLGAGNHFLEVQRVEKIFLPEIAKKFGITHEGQITVMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D + ME+A ++ I+ D QLACA + SKE +DY +M+A
Sbjct: 245 HQVAS--------------DYIRIMEQAARKYGIKLVDPQLACAPVKSKEAEDYFAAMSA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANF + NR +T R++F K F P+DL MH++Y V+HNIAK EEH+VDGK+ + V
Sbjct: 291 AANFGFTNRQLITHWVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHIVDGKRMKVYV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|261403672|ref|YP_003247896.1| hypothetical protein Metvu_1561 [Methanocaldococcus vulcanius M7]
gi|261370665|gb|ACX73414.1| protein of unknown function UPF0027 [Methanocaldococcus vulcanius
M7]
Length = 974
Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 167/261 (63%), Gaps = 19/261 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E EE G M +AD S
Sbjct: 617 LFKNVPSGLGSKGILKFSKGVMDDVLEEGVRWAVKEGYGWKEDLEFIEENGCMEDADASY 676
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLG+LG+GNH+ E+Q V++++D+ AA GIE+ QV V++H+GSRG G
Sbjct: 677 VSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEIYGIEE-NQVVVLVHTGSRGLG 735
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L MEKA K I+ DRQLACA S+EGQ Y K+M
Sbjct: 736 HQICT--------------DYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCC 781
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F + F +DL+M ++YDV+HNIAK EEH +DG++ ++V
Sbjct: 782 GANYAWANRQMITHWVRESFEEVFKIHAEDLEMSIVYDVAHNIAKKEEHTIDGRKVKVIV 841
Query: 241 HRK----VSEPSHPGVSRNKK 257
HRK P HP + + K
Sbjct: 842 HRKGATRAFPPKHPQIPKEYK 862
>gi|432328913|ref|YP_007247057.1| hypothetical protein AciM339_1019 [Aciduliprofundum sp. MAR08-339]
gi|432135622|gb|AGB04891.1| hypothetical protein AciM339_1019 [Aciduliprofundum sp. MAR08-339]
Length = 484
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 157/243 (64%), Gaps = 14/243 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG KG + + ++L + L+ G W++ GY W+ED + EE G + AD +K
Sbjct: 125 IFVNVPSGVGEKGKLRLTFQELNKVLDYGAKWAVENGYGWSEDLDRLEEGGSIKYADHTK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG PQLGTLGAGNH+ E+Q+VD+IY A K GI GQ+ VMIH+GSRG G
Sbjct: 185 VSEKAKKRGAPQLGTLGAGNHFLEVQMVDKIYIPDIAKKFGITHEGQIMVMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D + ME A ++ I+ D QLACA + SKE +DY +M+A
Sbjct: 245 HQVAS--------------DYIRVMEGASRKYGIKLADSQLACAPVKSKEAEDYFAAMSA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANF + NR + R++F K F P+DL MH++Y V+HNIAK EEH VDGK+ + V
Sbjct: 291 AANFGFTNRQLIMHWVRESFGKVFGEDPEDLGMHLVYGVAHNIAKLEEHTVDGKRVKVYV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|240103562|ref|YP_002959871.1| hypothetical protein TGAM_1505 [Thermococcus gammatolerans EJ3]
gi|239911116|gb|ACS34007.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length = 479
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 165/258 (63%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W ED EH EE GRM ADP+
Sbjct: 122 LFKNVPSGLGSKGRVRLHWTQLDDVLANGAKWAVDNGYGWKEDLEHLEEGGRMEGADPNA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG G
Sbjct: 182 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ I DR+L S+EGQ Y +M A
Sbjct: 241 HQVAS--------------DYLRIMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++MH++YDV+HNIAK EEH VDGK+ ++V
Sbjct: 287 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMHIVYDVAHNIAKVEEHEVDGKKVKVVV 346
Query: 241 HRKVS----EPSHPGVSR 254
HRK + HP V R
Sbjct: 347 HRKGATRAFPAGHPDVPR 364
>gi|14520776|ref|NP_126251.1| hypothetical protein PAB0383 [Pyrococcus abyssi GE5]
gi|74558462|sp|Q9V168.1|RTCB_PYRAB RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Pab hyp2 intein
gi|5457992|emb|CAB49482.1| rtcB homolog, intein containing [Pyrococcus abyssi GE5]
gi|380741316|tpe|CCE69950.1| TPA: hypothetical protein PAB0383 [Pyrococcus abyssi GE5]
Length = 916
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 159/250 (63%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G + ++ +++ L G W++ GY W ED E EE GRM ADP
Sbjct: 559 LFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEEDLERLEEGGRMEGADPDA 618
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 619 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGLFE-GQVVVMVHTGSRGLG 677
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 678 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 723
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P+DL M ++YDV+HNI K EEH VDGK+ ++V
Sbjct: 724 AANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVKVIV 783
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 784 HRKGATRAFP 793
>gi|390962133|ref|YP_006425967.1| hypothetical protein CL1_1978 [Thermococcus sp. CL1]
gi|390520441|gb|AFL96173.1| hypothetical protein CL1_1978 [Thermococcus sp. CL1]
Length = 960
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 165/258 (63%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W ED EH EE GRM ADP+
Sbjct: 603 LFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGADPNA 662
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG G
Sbjct: 663 VSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLG 721
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ + DR+L ++EGQ Y +M A
Sbjct: 722 HQVAS--------------DYLRIMEKANRKYGVPWPDRELVSVPFQTEEGQRYFSAMKA 767
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++M ++YDV+HNIAK EEH VDGK+ ++V
Sbjct: 768 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMSIVYDVAHNIAKVEEHEVDGKRVKVVV 827
Query: 241 HRKVSEPS----HPGVSR 254
HRK + + HP V R
Sbjct: 828 HRKGATRAFPAGHPDVPR 845
>gi|212223863|ref|YP_002307099.1| RNA terminal phosphate cyclase [Thermococcus onnurineus NA1]
gi|212008820|gb|ACJ16202.1| RNA terminal phosphate cyclase [Thermococcus onnurineus NA1]
Length = 479
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 161/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W +D EH EE GRM ADP+
Sbjct: 122 LFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYGWKDDLEHLEEGGRMEGADPNA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q++D IYD+ A G+ + GQV VM+H+GSRG G
Sbjct: 182 VSQKAKQRGAPQLGSLGSGNHFLEVQVIDRIYDEEVAKAYGLFE-GQVVVMVHTGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ + DR+L S+EGQ Y +M A
Sbjct: 241 HQVAS--------------DYLRVMEKANRKYGVPWPDRELVSVPFQSEEGQRYFSAMKA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++M ++YDV+HNIAK EEH VDGK+ ++V
Sbjct: 287 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMTIVYDVAHNIAKVEEHEVDGKKVRVVV 346
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 347 HRKGATRAFP 356
>gi|375083391|ref|ZP_09730414.1| RNA terminal phosphate cyclase [Thermococcus litoralis DSM 5473]
gi|374741901|gb|EHR78316.1| RNA terminal phosphate cyclase [Thermococcus litoralis DSM 5473]
Length = 480
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 161/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I ++ L++ L G W++ GY W ED EH EE GRM ADP+
Sbjct: 123 LFKNVPSGLGSKGRIRLHWTQLDDVLADGAKWAVENGYGWKEDLEHLEENGRMEGADPNA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q+VD+I+++ A G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFNEEIAKVYGLFE-GQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ N+ DR+L + EGQ Y +M A
Sbjct: 242 HQVAS--------------DYLRIMEKANRKYNVPWPDRELVSVPFQTGEGQRYFSAMKA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +DL M ++YDV+HNIAK EEH VDG++ ++V
Sbjct: 288 AANFAWANRQMITHWVRESFEEVFKQKAEDLGMSIVYDVAHNIAKVEEHEVDGRKVKVVV 347
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 348 HRKGATRAFP 357
>gi|67465219|ref|XP_648794.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|327488454|sp|C4M6T2.1|RTCB2_ENTHI RecName: Full=tRNA-splicing ligase RtcB homolog 2
gi|56465063|gb|EAL43408.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449706504|gb|EMD46339.1| protein C22orf28 family protein [Entamoeba histolytica KU27]
Length = 535
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 152/261 (58%), Gaps = 21/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG++ I + D + ++ G+++ + GY W ED HCEE+G++ NADPS
Sbjct: 180 LFKQIPSGVGTQAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSL 239
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG Q+GTLG+GNHY E+Q+VDEI D AA MGI ++GQVC+M+H GSRG G
Sbjct: 240 VSNSAKSRGYKQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGITEIGQVCIMVHCGSRGLG 299
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C Y+ MK D+QL NS GQ Y +M
Sbjct: 300 HQV---------CQDYI--------NLCMKSGICNPVDKQLTGVPFNSPIGQQYYSAMNC 342
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFA+ NR +T+ RQAF P +DMH++YDV HNIAK EEH VD K+ +V
Sbjct: 343 CANFAFANRGMITYRIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHDVDNKKVQCIV 402
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP +S + K
Sbjct: 403 HRKGATRAFPPQHPDISEDYK 423
>gi|407038485|gb|EKE39154.1| RtcB domain containing protein [Entamoeba nuttalli P19]
Length = 535
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 152/261 (58%), Gaps = 21/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG++ I + D + ++ G+++ + GY W ED HCEE+G++ NADPS
Sbjct: 180 LFKQIPSGVGTQAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSL 239
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG Q+GTLG+GNHY E+Q+VDEI D AA MGI ++GQVC+M+H GSRG G
Sbjct: 240 VSSSAKSRGYKQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGITEIGQVCIMVHCGSRGLG 299
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C Y+ MK D+QL NS GQ Y +M
Sbjct: 300 HQV---------CQDYI--------NLCMKSGICNPVDKQLTGVPFNSPIGQQYYSAMNC 342
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFA+ NR +T+ RQAF P +DMH++YDV HNIAK EEH VD K+ ++
Sbjct: 343 CANFAFANRGMITYRIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHDVDNKKVQCII 402
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP +S + K
Sbjct: 403 HRKGATRAFPPQHPDISEDYK 423
>gi|408403072|ref|YP_006861055.1| hypothetical protein Ngar_c04520 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363668|gb|AFU57398.1| uncharacterized protein family UPF0027 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 491
Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 160/251 (63%), Gaps = 15/251 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS+G + + +L+E L G+ W++R GY +D E CEE G M ADP+
Sbjct: 132 LFKSIPSGVGSEGAVRLTKAELDELLVEGVRWAVRHGYGTEDDAEVCEESGMMAGADPAS 191
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KRG PQLG+LG+GNH+ E+Q VD+I+D+ AA MG++ VGQ+ V+IH GSRGFG
Sbjct: 192 VSDTARKRGAPQLGSLGSGNHFLEVQKVDKIFDERAAKAMGLDQVGQLTVLIHCGSRGFG 251
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L E A+++ + DR+LAC NSKEG+DY K+M +
Sbjct: 252 HQICT--------------DYLRVSESALRKYGLTLADRELACVPNNSKEGEDYRKAMYS 297
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK-QKTLL 239
A NFAW NR +T R+ F + F LDM ++YDV+HNIAK E + VDG+ + ++
Sbjct: 298 ALNFAWANRQMITHWTRKTFERVFKAGEGGLDMDLVYDVAHNIAKVERYKVDGEGTRDVV 357
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 358 VHRKGATRAFP 368
>gi|389852904|ref|YP_006355138.1| hypothetical protein Py04_1491 [Pyrococcus sp. ST04]
gi|388250210|gb|AFK23063.1| hypothetical protein Py04_1491 [Pyrococcus sp. ST04]
Length = 444
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 162/259 (62%), Gaps = 20/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I ++ +++ L G W++ GY W D E EE GRM ADP
Sbjct: 86 LFKNVPSGVGSQGRIRLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPDA 145
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+IYD+ A G+ + GQV VM+H+GSRG G
Sbjct: 146 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIYDEEVAKAYGLFE-GQVVVMVHTGSRGLG 204
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 205 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 250
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ T++
Sbjct: 251 AANFAWANRQMITHWVRESFQEVFRQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKKVTVI 310
Query: 240 VHRKVS----EPSHPGVSR 254
VHRK + P H + R
Sbjct: 311 VHRKGATRAFPPGHEAIPR 329
>gi|452210116|ref|YP_007490230.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Methanosarcina mazei Tuc01]
gi|452100018|gb|AGF96958.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Methanosarcina mazei Tuc01]
Length = 500
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 158/250 (63%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSK + ++L+ A G W++ GY D EHCE G + AD S
Sbjct: 143 LFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGYGVEADVEHCEGNGFLEGADTSH 202
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VDEIYD AS G+E+ GQV VM+H GSRG G
Sbjct: 203 VSSKARNRGKPQLGTLGSGNHFLEVQYVDEIYDPEVASAFGLEE-GQVTVMVHCGSRGAG 261
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L ++ +A+KR IE D+QLACA SKE Q+Y K+M
Sbjct: 262 HQICT--------------DHLKELSQAVKRYGIEIPDKQLACAPAQSKEAQNYFKAMLC 307
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++F K F DD++M ++YDV+HN+AK EEH ++G++K + V
Sbjct: 308 AANYAWANRQMITHWTRESFEKVFGRDADDMEMSLLYDVAHNVAKLEEHSIEGRKKEVYV 367
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 368 HRKGATRAFP 377
>gi|126465883|ref|YP_001040992.1| hypothetical protein Smar_0985 [Staphylothermus marinus F1]
gi|126014706|gb|ABN70084.1| protein of unknown function UPF0027 [Staphylothermus marinus F1]
Length = 483
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/259 (47%), Positives = 168/259 (64%), Gaps = 18/259 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG+ G + ++ L+E L G++W++ G+ W ED +H EE G AD SK
Sbjct: 126 LFRNVPSGVGATGKLRLSFDQLDEVLNRGVEWAIENGFGWPEDMDHIEEQGSWKVADASK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG QLGTLGAGNH+ EIQ+VD+IYD A MGI GQV +MIH+GSRG G
Sbjct: 186 VSRRAKQRGHNQLGTLGAGNHFLEIQVVDKIYDPEVAKAMGITHEGQVTIMIHTGSRGLG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I DR+LA + E QDY K+MAA
Sbjct: 246 HQVAS--------------DYLLLMERAMRKYGIRPPDRELASLPFKTPEAQDYFKAMAA 291
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + R++F + F+ P+DL M ++YDV+HNIAK EEH+VDGK+ ++V
Sbjct: 292 AANFAWTNRQIIMHWTRESFKQVFHKDPEDLGMKLVYDVAHNIAKIEEHIVDGKKYKVVV 351
Query: 241 HRKVS----EPSHPGVSRN 255
HRK + P HP + ++
Sbjct: 352 HRKGATRAFPPGHPEIPKD 370
>gi|297527439|ref|YP_003669463.1| hypothetical protein Shell_1476 [Staphylothermus hellenicus DSM
12710]
gi|297256355|gb|ADI32564.1| protein of unknown function UPF0027 [Staphylothermus hellenicus DSM
12710]
Length = 483
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 168/259 (64%), Gaps = 18/259 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG+ G + ++ L+E L G++W++ G+ W ED EH EE G AD K
Sbjct: 126 LFRNVPSGVGATGKLRLSFAQLDEVLNRGVEWAVENGFGWPEDMEHIEERGSWKIADAGK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG QLGTLGAGNH+ E+Q+VD+IYD AA MGI GQV VMIH+GSRG G
Sbjct: 186 VSRRAKRRGHNQLGTLGAGNHFLEVQVVDKIYDPEAAKAMGITHEGQVTVMIHTGSRGLG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ I DR+LA + E Q+Y K+MAA
Sbjct: 246 HQVAS--------------DYLLIMERAMRKYGIRPPDRELASLPFKTPEAQEYFKAMAA 291
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + R++F + F+ P+DL M +IYDV+HNIAK EEH+VDGK+ ++V
Sbjct: 292 AANFAWTNRQIIMHWTRESFKQVFHRDPEDLGMKLIYDVAHNIAKIEEHIVDGKKYKVVV 351
Query: 241 HRKVS----EPSHPGVSRN 255
HRK + P HP + ++
Sbjct: 352 HRKGATRAFPPGHPEIPKD 370
>gi|21227640|ref|NP_633562.1| replication factor C subunit [Methanosarcina mazei Go1]
gi|20906030|gb|AAM31234.1| Replication factor C subunit [Methanosarcina mazei Go1]
Length = 500
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 158/250 (63%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSK + ++L+ A G W++ GY D EHCE G + AD S
Sbjct: 143 LFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGYGVEADVEHCEGNGFLEGADTSH 202
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VDEIYD AS G+E+ GQV VM+H GSRG G
Sbjct: 203 VSSKARNRGKPQLGTLGSGNHFLEVQYVDEIYDPEVASAFGLEE-GQVTVMVHCGSRGAG 261
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L ++ +A+KR IE D+QLACA SKE Q+Y K+M
Sbjct: 262 HQICT--------------DHLKELSQAVKRYGIEIPDKQLACAPAQSKEAQNYFKAMLC 307
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++F K F DD++M ++YDV+HN+AK EEH ++G++K + V
Sbjct: 308 AANYAWANRQMITHWTRESFEKIFGRDADDMEMSLLYDVAHNVAKLEEHSIEGRKKEVYV 367
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 368 HRKGATRAFP 377
>gi|379005269|ref|YP_005260941.1| hypothetical protein Pogu_2307 [Pyrobaculum oguniense TE7]
gi|375160722|gb|AFA40334.1| hypothetical protein Pogu_2307 [Pyrobaculum oguniense TE7]
Length = 484
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKLFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + ++YDV+HNIAK EEH+VD G K +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLEIVYDVAHNIAKLEEHVVDEKGTVKKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|355572245|ref|ZP_09043427.1| protein of unknown function UPF0027 [Methanolinea tarda NOBI-1]
gi|354824961|gb|EHF09200.1| protein of unknown function UPF0027 [Methanolinea tarda NOBI-1]
Length = 477
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/256 (45%), Positives = 160/256 (62%), Gaps = 21/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG K + ++ +DL+ L G W++R+G+ AED E CEE G M ADP+
Sbjct: 122 LYREIPTGVGGKSNLRLSGKDLDSVLVEGASWAVRQGFGRAEDTEFCEERGCMEGADPAA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG+PQ GTLG+GNH+ E+Q+V EIYD+ AAS G+ GQVC+MIH GSRG G
Sbjct: 182 VSEKARARGIPQSGTLGSGNHFLEVQVVREIYDEAAASAFGLVP-GQVCIMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A KR I DRQLACA ++S EG+ Y +MAA
Sbjct: 241 HQVCT--------------DHLRVLEAATKRYGISLPDRQLACAPLDSPEGRAYFGAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR + R+ + ++ +M ++YDV+HN+AK EEH+VDGK+ L V
Sbjct: 287 SANYAWANRQVIMHRTRKVMEELYHV--PQKEMRLVYDVAHNVAKIEEHLVDGKRLRLCV 344
Query: 241 HRKVSE----PSHPGV 252
HRK + P PG+
Sbjct: 345 HRKGATRAFGPGSPGI 360
>gi|145590437|ref|YP_001152439.1| hypothetical protein Pars_0172 [Pyrobaculum arsenaticum DSM 13514]
gi|145282205|gb|ABP49787.1| protein of unknown function UPF0027 [Pyrobaculum arsenaticum DSM
13514]
Length = 498
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 139 IFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 198
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 199 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKLFGIEREGQVVVMIHTGSRGFG 258
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 259 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 304
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + ++YDV+HNIAK EEH+VD G K +
Sbjct: 305 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLEIVYDVAHNIAKLEEHVVDEKGTVKKV 363
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 364 WVHRKGATRAFP 375
>gi|325958314|ref|YP_004289780.1| hypothetical protein Metbo_0556 [Methanobacterium sp. AL-21]
gi|325329746|gb|ADZ08808.1| protein of unknown function UPF0027 [Methanobacterium sp. AL-21]
Length = 481
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 159/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSKG + + ++++ L G +W++ GY W D + EE G+M +AD
Sbjct: 124 LFKNVPSGVGSKGKVRLKEGEIDDVLNNGAEWAVENGYGWESDLKFLEENGKMESADSEA 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ EIQ ++EIYD+ AA GIE+ GQ+ +MIHSGSRG G
Sbjct: 184 VSAKAKKRGIPQLGSLGSGNHFLEIQKMEEIYDEKAAKAFGIEE-GQITIMIHSGSRGCG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L M+KA K NI+ DRQLACA ++S+E QDY K+M+
Sbjct: 243 HQICA--------------DYLRTMDKAYKAYNIDLPDRQLACAPVDSQEAQDYFKAMSC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F + + D++M V+YDV+HNIAK E+H + G + + V
Sbjct: 289 AANYAWTNRQMILHWVRESFEEVYKKDSQDMNMGVVYDVAHNIAKKEKHTIKGIETEVYV 348
Query: 241 HRK 243
HRK
Sbjct: 349 HRK 351
>gi|242399527|ref|YP_002994952.1| hypothetical protein TSIB_1552 [Thermococcus sibiricus MM 739]
gi|242265921|gb|ACS90603.1| hypothetical protein TSIB_1552 [Thermococcus sibiricus MM 739]
Length = 938
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 160/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ LE+ L G W++ GY W ED EH EE GRM A+
Sbjct: 581 LFKNVPSGLGSKGRVRLHWTQLEDVLSDGAKWAVDNGYGWKEDLEHLEENGRMEGANSDA 640
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG PQLG+LG+GNH+ E+Q+VDEI+++ A G+ + GQ+ VM+H+GSRG G
Sbjct: 641 VSQTAKQRGAPQLGSLGSGNHFLEVQVVDEIFNEQIAKVYGLFE-GQIVVMVHTGSRGLG 699
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ N+ DR+L ++EGQ Y +M
Sbjct: 700 HQVAS--------------DYLRIMEKANRKYNVPWPDRELVSVPFQTEEGQRYFSAMKG 745
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +DL+M+V+YDV+HNIAK EEH VDG++ ++V
Sbjct: 746 AANFAWANRQMITHWVRESFEEVFKQKAEDLEMNVVYDVAHNIAKVEEHEVDGRKVKVVV 805
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 806 HRKGATRAFP 815
>gi|18312338|ref|NP_559005.1| hypothetical protein PAE0998 [Pyrobaculum aerophilum str. IM2]
gi|74565041|sp|Q8ZY09.1|RTCB_PYRAE RecName: Full=tRNA-splicing ligase RtcB
gi|18159787|gb|AAL63187.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 484
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + V+YDV+HNIAK EEH+VD G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLEVVYDVAHNIAKLEEHVVDEKGTVRKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|126458767|ref|YP_001055045.1| hypothetical protein Pcal_0141 [Pyrobaculum calidifontis JCM 11548]
gi|126248488|gb|ABO07579.1| protein of unknown function UPF0027 [Pyrobaculum calidifontis JCM
11548]
Length = 484
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKTFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + ++YDV+HNIAK EEH+VD G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLELVYDVAHNIAKLEEHVVDDRGTVRKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|256084900|ref|XP_002578663.1| hypothetical protein [Schistosoma mansoni]
Length = 1072
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 102/123 (82%), Positives = 113/123 (91%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPM+A+ LEEALEMGMDWSLR+GY+WAEDKEHCEEYGRML ADPSK
Sbjct: 945 LFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRMLQADPSK 1004
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V+EI+DK AA+KMGI + QV +MIH GSRG G
Sbjct: 1005 VSSRAKKRGLPQLGTLGAGNHYAEIQVVEEIFDKHAATKMGINHLNQVVLMIHCGSRGMG 1064
Query: 121 HQV 123
HQV
Sbjct: 1065 HQV 1067
>gi|171184641|ref|YP_001793560.1| hypothetical protein Tneu_0157 [Pyrobaculum neutrophilum V24Sta]
gi|170933853|gb|ACB39114.1| protein of unknown function UPF0027 [Pyrobaculum neutrophilum
V24Sta]
Length = 484
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+I+D+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIFDEKIAKTFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M+R + DR+LA A + + +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLVMERNMRRWGLNLPDRELAAAPLKDRVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + ++YDV+HNIAK EEH+VD G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLEIVYDVAHNIAKLEEHVVDDKGTVRKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|397652736|ref|YP_006493317.1| hypothetical protein PFC_10530 [Pyrococcus furiosus COM1]
gi|393190327|gb|AFN05025.1| hypothetical protein PFC_10530 [Pyrococcus furiosus COM1]
Length = 962
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 160/251 (63%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G + ++ +++ L G W++ +GY W D E EE GRM ADP
Sbjct: 604 LFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRMEGADPDA 663
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG G
Sbjct: 664 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLG 722
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 723 HQVAS--------------DYLRIMERAIRKYGIPWPDRELVSVPFQSEEGQRYFSAMKA 768
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 769 AANFAWANRQMITHWVRESFQEVFRQDPEGDLGMEIVYDVAHNIGKVEEHEVDGKKVKVI 828
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 829 VHRKGATRAFP 839
>gi|337283911|ref|YP_004623385.1| hypothetical protein PYCH_04230 [Pyrococcus yayanosii CH1]
gi|334899845|gb|AEH24113.1| hypothetical protein PYCH_04230 [Pyrococcus yayanosii CH1]
Length = 479
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 160/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GS+G + ++ L++ L G W++ GY W D E EE GRM ADP+
Sbjct: 122 LFKNVPSGLGSQGRVRLHWTQLDDVLADGAKWAVDNGYGWERDLERLEEGGRMEGADPNA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+++D A G+ + GQV VM+H+GSRG G
Sbjct: 182 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKVFDPEIAKAYGLFE-GQVVVMVHTGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ + DR+L S+EGQ Y +M A
Sbjct: 241 HQVAS--------------DYLRIMERAVRKYGLPWPDRELVSVPFQSEEGQKYFSAMKA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P+D+ M ++YDV+HNI K EEH+V+GK+ ++V
Sbjct: 287 AANFAWANRQMITHWVRESFQEVFRQDPEDMGMEIVYDVAHNIGKVEEHVVNGKKVRVIV 346
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 347 HRKGATRAFP 356
>gi|18977987|ref|NP_579344.1| hypothetical protein PF1615 [Pyrococcus furiosus DSM 3638]
gi|74551946|sp|Q8U0H4.1|RTCB_PYRFU RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Pfu hyp2 intein
gi|18893765|gb|AAL81739.1| hypothetical protein PF1615 [Pyrococcus furiosus DSM 3638]
Length = 970
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 160/251 (63%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G + ++ +++ L G W++ +GY W D E EE GRM ADP
Sbjct: 612 LFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRMEGADPDA 671
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG G
Sbjct: 672 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLG 730
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 731 HQVAS--------------DYLRIMERAIRKYGIPWPDRELVSVPFQSEEGQRYFSAMKA 776
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 777 AANFAWANRQMITHWVRESFQEVFRQDPEGDLGMEIVYDVAHNIGKVEEHEVDGKKVKVI 836
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 837 VHRKGATRAFP 847
>gi|14591379|ref|NP_143457.1| hypothetical protein PH1602 [Pyrococcus horikoshii OT3]
gi|74571519|sp|O59245.1|RTCB_PYRHO RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Pho hyp2 intein
gi|3258031|dbj|BAA30714.1| 871aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 871
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I ++ +++ L G W++ GY W D E EE GRM ADP
Sbjct: 513 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 572
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 573 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 631
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 632 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 677
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 678 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 737
Query: 240 VHRKVS----EPSHPGVSR 254
VHRK + P H V R
Sbjct: 738 VHRKGATRAFPPGHEAVPR 756
>gi|20089164|ref|NP_615239.1| hypothetical protein MA0266 [Methanosarcina acetivorans C2A]
gi|19914035|gb|AAM03719.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 500
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 158/250 (63%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSK + R+L+ A G W++ GY D EHCE G + AD S
Sbjct: 143 LFTNVPAGVGSKSRFRASDRELDSAFLEGAKWAVDAGYGVDADVEHCEGNGYLEGADTSY 202
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VDEIYD+ AS G+E+ GQV VM+H GSRG G
Sbjct: 203 VSTKARNRGKPQLGTLGSGNHFLEVQYVDEIYDREVASAFGLEE-GQVTVMVHCGSRGAG 261
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L ++ +A+K+ IE D+QLACA S+E Q+Y K+M
Sbjct: 262 HQICT--------------DHLKELSQAVKKYGIEIPDKQLACAPAQSREAQNYFKAMLC 307
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++F K F D++ M ++YDV+HN+AK EEH ++G++K + V
Sbjct: 308 AANYAWANRQMITHWTRESFEKVFGRDADEMGMSLLYDVAHNVAKLEEHNIEGRKKEVYV 367
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 368 HRKGATRAFP 377
>gi|403071988|pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX
gi|403071989|pdb|4DWR|A Chain A, Rna Ligase RtcbMN2+ COMPLEX
gi|403071990|pdb|4DWR|C Chain C, Rna Ligase RtcbMN2+ COMPLEX
Length = 487
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I ++ +++ L G W++ GY W D E EE GRM ADP
Sbjct: 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 242 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 288 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347
Query: 240 VHRKVS----EPSHPGVSR 254
VHRK + P H V R
Sbjct: 348 VHRKGATRAFPPGHEAVPR 366
>gi|48425780|pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
gi|48425781|pdb|1UC2|B Chain B, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
gi|403071986|pdb|4DWQ|A Chain A, Rtcb-GmpMN2+ COMPLEX
gi|403071987|pdb|4DWQ|B Chain B, Rtcb-GmpMN2+ COMPLEX
Length = 481
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I ++ +++ L G W++ GY W D E EE GRM ADP
Sbjct: 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 242 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 288 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347
Query: 240 VHRKVS----EPSHPGVSR 254
VHRK + P H V R
Sbjct: 348 VHRKGATRAFPPGHEAVPR 366
>gi|336477603|ref|YP_004616744.1| hypothetical protein [Methanosalsum zhilinae DSM 4017]
gi|335930984|gb|AEH61525.1| protein of unknown function UPF0027 [Methanosalsum zhilinae DSM
4017]
Length = 490
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 160/261 (61%), Gaps = 19/261 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+GSK + + +L++A G W++ GY D EHCE G + ADPSK
Sbjct: 133 LFEAVPSGLGSKSRLRASDSELDDAFVHGSRWAVEAGYGVEADIEHCEGSGFIEGADPSK 192
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLGTLG+GNH+ E+Q VD IYD AAS G+E+ GQV +M+H GSRG G
Sbjct: 193 VSAKARKRGKPQLGTLGSGNHFLEVQYVDNIYDNDAASVFGLEE-GQVTIMVHCGSRGAG 251
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L + +++K I D+QLACA S E QDY K+MA
Sbjct: 252 HQICT--------------DHLRVLSQSVKNYGISIPDKQLACAPATSTEAQDYFKAMAC 297
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R+ F + F + L M ++YDV+HN+AK EEH++DG++K + V
Sbjct: 298 AANYAWANRQIITHWTREVFEQVFGRDAESLGMDLVYDVAHNVAKLEEHIIDGRKKKVYV 357
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P H V R +
Sbjct: 358 HRKGATRAFPPGHSEVPRKYR 378
>gi|341581350|ref|YP_004761842.1| hypothetical protein GQS_01315 [Thermococcus sp. 4557]
gi|340809008|gb|AEK72165.1| hypothetical protein GQS_01315 [Thermococcus sp. 4557]
Length = 960
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 164/258 (63%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W ED EH EE GRM ADP+
Sbjct: 603 LFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGADPNA 662
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q+VD+++D+ A G+ + GQV VM+H+GSRG G
Sbjct: 663 VSQKAKQRGAPQLGSLGSGNHFLEVQVVDKVFDEKIAEAYGLYE-GQVVVMVHTGSRGLG 721
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ + DR+L ++EGQ Y +M A
Sbjct: 722 HQVAS--------------DYLRIMEKANRKYGVPWPDRELVSVPFQTEEGQRYFSAMKA 767
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++M ++YDV+HNIAK EEH VDGK+ ++V
Sbjct: 768 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMSIVYDVAHNIAKVEEHEVDGKKVKVVV 827
Query: 241 HRKVSE----PSHPGVSR 254
HRK + HP V R
Sbjct: 828 HRKGATRAFPAGHPDVPR 845
>gi|315230363|ref|YP_004070799.1| Protein RtcB [Thermococcus barophilus MP]
gi|315183391|gb|ADT83576.1| Protein RtcB [Thermococcus barophilus MP]
Length = 479
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 159/258 (61%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + + L++ L G W++ GY W ED E EE G M A+PS
Sbjct: 122 LFKNVPSGLGSKGRVRLQWTQLDDVLAEGAKWAVDNGYGWREDLERLEEGGGMEGANPSY 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG PQLG+LG+GNH+ E+Q+VD+++D A G+ + GQV VM+H+GSRG G
Sbjct: 182 VSDTAKRRGAPQLGSLGSGNHFLEVQVVDKVFDPEVAEVYGLFE-GQVVVMVHTGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ I DR+L S+EGQ Y +M A
Sbjct: 241 HQVAS--------------DYLRIMEKANRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +DL MH++YDV+HNIAK EEH VDG++ ++V
Sbjct: 287 AANFAWANRQMITHWVRESFEEVFRQKAEDLGMHIVYDVAHNIAKLEEHEVDGRKVKVVV 346
Query: 241 HRKVS----EPSHPGVSR 254
HRK + P H V R
Sbjct: 347 HRKGATRAFPPGHEAVPR 364
>gi|332157831|ref|YP_004423110.1| hypothetical protein PNA2_0188 [Pyrococcus sp. NA2]
gi|331033294|gb|AEC51106.1| hypothetical protein PNA2_0188 [Pyrococcus sp. NA2]
Length = 916
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 158/251 (62%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I + +++ L G W++ GY W D E EE GRM ADP
Sbjct: 558 LFKNVPSGVGSEGRIKLRWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPDA 617
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD++YD+ A G+ + GQV VM+H+GSRG G
Sbjct: 618 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKVYDEEIAKAYGLFE-GQVVVMVHTGSRGLG 676
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 677 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFESEEGQKYFSAMKA 722
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH V+GK+ ++
Sbjct: 723 AANFAWANRQMITHWVRESFQEVFRQDPEGDLGMDIVYDVAHNIGKVEEHEVNGKKVKVI 782
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 783 VHRKGATRAFP 793
>gi|167045800|gb|ABZ10469.1| hypothetical protein [Callithrix jacchus]
Length = 260
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 122/158 (77%), Gaps = 18/158 (11%)
Query: 100 MGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDR 159
MGI+ GQVCVMIHSGSRG GHQVAT DALV MEKAMKRD I NDR
Sbjct: 1 MGIDRKGQVCVMIHSGSRGLGHQVAT--------------DALVAMEKAMKRDKIIVNDR 46
Query: 160 QLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDV 219
QLACARI S EGQDYLK MAAA N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDV
Sbjct: 47 QLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDV 106
Query: 220 SHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHPGVS 253
SHNIAK E+H+VDGK++TLLVHRK S P HP ++
Sbjct: 107 SHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIA 144
>gi|268326033|emb|CBH39621.1| conserved hypothetical protein, UPF0027 family [uncultured
archaeon]
Length = 502
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD+IP G+G G + ++ L+E L G +W + GY W ED EH EE GR+ A K
Sbjct: 124 LFDYIPAGLGLSGKVKLSYSQLDEVLLGGSNWCIENGYGWEEDIEHTEEGGRLKAASIDK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++KKRG PQLGTLG+GNH+ E+Q+VDEI+DK A+ GI++VGQV V+IH+G RGF
Sbjct: 184 IDEKSKKRGSPQLGTLGSGNHFLEVQVVDEIFDKQLANAYGIDEVGQVTVLIHTGGRGFS 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRD----NIETNDRQLACARINSKEGQDYLK 176
H V C Y L + E+ M +D I +R+LACA +NS G DY
Sbjct: 244 HGV---------CTYY-----LRKFEREMNKDATLSKILGLERELACAYLNSDTGMDYFV 289
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
SM A AN+A+ NR T R+ F +D+++ ++YD++HNIAK EEH+VDGK+K
Sbjct: 290 SMCACANYAFANRQLATHWTRKVFEDVLRRKAEDMEIKLVYDIAHNIAKEEEHVVDGKRK 349
Query: 237 TLLVHRKVSEPSHP 250
L VHRK + + P
Sbjct: 350 KLCVHRKGATRAFP 363
>gi|409095859|ref|ZP_11215883.1| protein RtcB [Thermococcus zilligii AN1]
Length = 924
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 163/258 (63%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GS+G + ++ +++ L G W++ GY W ED EH EE GRM ADP+
Sbjct: 567 LFKNVPSGLGSEGRVKLHWTQIDDVLANGAKWAVENGYGWEEDLEHLEEGGRMEGADPNA 626
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q+VD+++D+ A G+ + GQV VM+H+GSRG G
Sbjct: 627 VSQKAKQRGAPQLGSLGSGNHFLEVQVVDKVFDEKIAKAYGLFE-GQVVVMVHTGSRGLG 685
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME A ++ I DR+L S+EGQ Y +M A
Sbjct: 686 HQVAS--------------DYLRIMEDANRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 731
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++M V+YDV+HNIAK EEH VDGK+ ++V
Sbjct: 732 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMGVVYDVAHNIAKVEEHTVDGKKVKVVV 791
Query: 241 HRKVS----EPSHPGVSR 254
HRK + HP V R
Sbjct: 792 HRKGATRAFPAGHPDVPR 809
>gi|383320452|ref|YP_005381293.1| hypothetical protein Mtc_2035 [Methanocella conradii HZ254]
gi|379321822|gb|AFD00775.1| hypothetical protein Mtc_2035 [Methanocella conradii HZ254]
Length = 479
Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 152/243 (62%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P G+GS+ + + L+E +G W++ GY D EHCEE G M ADPSK
Sbjct: 125 LYSAVPSGLGSESKLRVTDAQLDEVFTLGARWAVENGYGVKADLEHCEENGEMKGADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +A+ RG PQLGTLG+GNH+ E+Q V+++YD A G+ + GQV VM+H GSRG G
Sbjct: 185 ISKKARDRGRPQLGTLGSGNHFLEVQYVEKVYDDAVAKAFGLWE-GQVTVMVHCGSRGAG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +EKA + I+ DRQLACA INSKE QDY +MA
Sbjct: 244 HQICT--------------DHLKVLEKAYVKYGIKLYDRQLACAPINSKEAQDYFAAMAG 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR + R+ F + F DDL M ++YDV+HN+AK EEHMV+G++K L V
Sbjct: 290 GANYAWANRQVIAHWVRETFNRFFK---DDLRMDLLYDVAHNVAKFEEHMVNGEKKMLCV 346
Query: 241 HRK 243
HRK
Sbjct: 347 HRK 349
>gi|374327865|ref|YP_005086065.1| hypothetical protein P186_2427 [Pyrobaculum sp. 1860]
gi|356643134|gb|AET33813.1| hypothetical protein P186_2427 [Pyrobaculum sp. 1860]
Length = 484
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 162/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED + EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLRLSPTEFERVLAEGVEWAVQKGYGWAEDMDFIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKVFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + ++YDV+HNIAK E+H++D G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLELVYDVAHNIAKLEDHVIDERGTVRRV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|298675939|ref|YP_003727689.1| hypothetical protein Metev_2065 [Methanohalobium evestigatum
Z-7303]
gi|298288927|gb|ADI74893.1| protein of unknown function UPF0027 [Methanohalobium evestigatum
Z-7303]
Length = 487
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 162/257 (63%), Gaps = 22/257 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+GSK + ++ +L++ G W++ GY D EHCE G + ADPS+
Sbjct: 133 LFNKIPSGLGSKSGLKVSDAELDDVFRHGAQWAVDNGYGVKADVEHCEGNGLIKGADPSQ 192
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KRG PQLGTLG+GNH+ E+Q VD+IYD AS G+E+ GQV V IH GSRG G
Sbjct: 193 VSKEARKRGRPQLGTLGSGNHFLEVQYVDKIYDDVIASDFGLEE-GQVTVSIHCGSRGAG 251
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L ++ +A+K+ I+ D+QLACA NS+E Q+Y K+MA
Sbjct: 252 HQICS--------------DHLRELTQAVKKYGIQLPDKQLACAPANSREAQNYFKAMAC 297
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F F D+DM+++YDV+HN+AK EEH ++G++K + V
Sbjct: 298 AANYAWANRQVINHWTREVFENIFGK---DIDMNLVYDVAHNVAKLEEHTINGEKKQVYV 354
Query: 241 HRKVSE----PSHPGVS 253
HRK + P HP +S
Sbjct: 355 HRKGATRAFPPEHPELS 371
>gi|118431578|ref|NP_148148.2| hypothetical protein APE_1758.1 [Aeropyrum pernix K1]
gi|152031731|sp|Q9YB37.2|RTCB_AERPE RecName: Full=tRNA-splicing ligase RtcB
gi|116062903|dbj|BAA80761.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 481
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 172/259 (66%), Gaps = 19/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P G+GS G + ++ ++L++ L+ G++W++ GY W EDKEH EE G AD SK
Sbjct: 125 LYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGWPEDKEHIEERGSWSLADSSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLG+GNH+ E+Q+V+ ++D+ A G+ + GQV VMIH+GSRG G
Sbjct: 185 VSQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDERIAKAYGLFE-GQVVVMIHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ DR+LA NS E Q+Y+++MAA
Sbjct: 244 HQVAS--------------DYLMIMERAMRKYGTIPPDRELASIPYNSPEAQNYVRAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F K F+ PD L + ++YDV+HNIAK EE+ VDGK+K L++
Sbjct: 290 AANFAWTNRQMITHWTRESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEYEVDGKRKKLVI 349
Query: 241 HRKVS----EPSHPGVSRN 255
HRK + P HP + ++
Sbjct: 350 HRKGATRAFPPGHPEIPKD 368
>gi|57234437|ref|YP_181550.1| hypothetical protein DET0823 [Dehalococcoides ethenogenes 195]
gi|57224885|gb|AAW39942.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
Length = 486
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 155/250 (62%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G I ++ D++ + G +W+L +G +ED EE G + A+P +
Sbjct: 128 LFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGESEDISLTEECGSLSGANPDR 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG G
Sbjct: 188 VSPKAKTRGSSQLGTLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D + + + +++ I DRQLACA + S++GQ+YL +MA
Sbjct: 248 HQVCT--------------DYVQLLNETVRKYGINLPDRQLACAPLKSEDGQNYLAAMAC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AW NR +T R AF K F DL M+ IYDV+HNIAK EEHMVDGK + + V
Sbjct: 294 ASNYAWANRQCITQWARDAFMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDGKMQNVCV 353
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 354 HRKGATRSFP 363
>gi|57640293|ref|YP_182771.1| hypothetical protein TK0358 [Thermococcus kodakarensis KOD1]
gi|74502009|sp|Q5JCZ1.1|RTCB_PYRKO RecName: Full=tRNA-splicing ligase RtcB
gi|57158617|dbj|BAD84547.1| RNA terminal phosphate cyclase operon orfB homolog, UPF0027 family
[Thermococcus kodakarensis KOD1]
Length = 482
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 161/258 (62%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W D EH EE GRM ADP
Sbjct: 125 LFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWERDLEHLEEGGRMEGADPDA 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q VD++Y++ A G+ + GQV VM+H+GSRG G
Sbjct: 185 VSQKAKQRGAPQLGSLGSGNHFLEVQYVDKVYNEEIAKAYGLFE-GQVVVMVHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ + DR+L S+EGQ Y +M A
Sbjct: 244 HQVAS--------------DYLRIMEKANRKYGVPWPDRELVSVPFQSEEGQQYFSAMKA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++M ++YDV+HNIAK EEH VDGK+ ++V
Sbjct: 290 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMEIVYDVAHNIAKLEEHEVDGKKVKVVV 349
Query: 241 HRKVS----EPSHPGVSR 254
HRK + HP V R
Sbjct: 350 HRKGATRAFPAGHPDVPR 367
>gi|268323093|emb|CBH36681.1| conserved hypothetical protein, UPF0027 family [uncultured
archaeon]
Length = 502
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 156/254 (61%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD+IP G+G G + ++ L+E L G +W + GY W ED E EE GR+ A K
Sbjct: 124 LFDYIPAGLGLSGKVKLSYSQLDEVLLGGSNWCIENGYGWEEDIERTEEGGRLKAASIEK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++KKRG PQLGTLG+GNH+ E+Q+VDEI+DK A+ GI++VGQV ++IH+G RGF
Sbjct: 184 IDEKSKKRGSPQLGTLGSGNHFLEVQVVDEIFDKQLANAYGIDEVGQVTILIHTGGRGFS 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRD----NIETNDRQLACARINSKEGQDYLK 176
H V C Y L + E+ M +D I +R+LACA +NS G DY
Sbjct: 244 HGV---------CTYY-----LRKFEREMNKDATLSKILGLERELACAYLNSDTGMDYFV 289
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
SM A AN+A+ NR T R+ F +D+++ ++YD++HNIAK EEH+VDGK+K
Sbjct: 290 SMCACANYAFANRQLATHWTRKVFEDVLRRKAEDMEIKLVYDIAHNIAKEEEHVVDGKRK 349
Query: 237 TLLVHRKVSEPSHP 250
L VHRK + + P
Sbjct: 350 KLCVHRKGATRAFP 363
>gi|429216877|ref|YP_007174867.1| hypothetical protein Calag_0669 [Caldisphaera lagunensis DSM 15908]
gi|429133406|gb|AFZ70418.1| hypothetical protein Calag_0669 [Caldisphaera lagunensis DSM 15908]
Length = 480
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 162/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++D++P G+GS G + + +L+ L G W++ +GY W +D + EE G AD SK
Sbjct: 124 IYDNVPSGLGSTGKLKLTNAELDNILNYGAKWAVEKGYGWEKDIDFIEENGAWKLADASK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KRG +LGTLG+GNH+ E+Q VD+++D+ A GI + QV +MIH+GSRG G
Sbjct: 184 VSNAARKRGSNELGTLGSGNHFLEVQYVDKVFDEKLAKAFGIFE-NQVTIMIHTGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+AM+R N DR+LA NS E QDY+++MA+
Sbjct: 243 HQVAS--------------DYLQIMERAMRRYNTIPPDRELASIPYNSPEAQDYVRAMAS 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++FA+ F T P++L M ++YDV+HNIAK EE+ +DGK+K ++V
Sbjct: 289 AANYAWANRQIIMHWTRESFAQVFKTDPENLGMDLVYDVAHNIAKIEEYDIDGKRKKVVV 348
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 349 HRKGATRAFP 358
>gi|262089342|gb|ACY24562.1| uncharacterized conserved protein [uncultured crenarchaeote 76h13]
Length = 490
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 154/251 (61%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS + +L+E L G+ W++++GY W D + CEE G M ADP
Sbjct: 132 LFRAIPSGVGSSSSRKVTGSELDELLVEGVKWTVQKGYGWDSDIDVCEENGSMKGADPVH 191
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KRG PQLGTLG+GNH+ E+Q VD+I+D+ AA MG+E+ GQV V+IH GSRGFG
Sbjct: 192 VSDLARKRGGPQLGTLGSGNHFLELQRVDKIFDEKAAQVMGVEE-GQVTVLIHCGSRGFG 250
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L EK ++ + DR+LAC NS EG+ Y K+M +
Sbjct: 251 HQVCT--------------DYLKVSEKKIRETGMNIIDRELACVPNNSPEGESYRKAMYS 296
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK-QKTLL 239
A NFAW NR +T R F K T D+DM ++YDVSHNIAK E H VDG+ + L+
Sbjct: 297 ALNFAWSNRQMITHWTRNTFEKVMGMTEGDIDMKLVYDVSHNIAKVERHAVDGEGSRDLV 356
Query: 240 VHRKVSEPSHP 250
+HRK + + P
Sbjct: 357 IHRKGATRAFP 367
>gi|262089268|gb|ACY24490.1| uncharacterized conserved protein [uncultured crenarchaeote 29d5]
Length = 490
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 155/251 (61%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS + +L+E L G+ W++++GY W D + CEE G M ADP
Sbjct: 132 LFHAIPSGVGSSSSRKVTGSELDELLVEGVKWTVQKGYGWDSDVDVCEENGCMKGADPLH 191
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KRG PQLGTLG+GNH+ E+Q VD+IYD+ AA MGIE+ G V V+IH GSRGFG
Sbjct: 192 VSDLARKRGGPQLGTLGSGNHFLELQRVDKIYDEKAAESMGIEE-GLVTVLIHCGSRGFG 250
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L EK ++ ++ DR+LAC NS+EG+ Y K+M +
Sbjct: 251 HQVCT--------------DYLKISEKKIRESGMDIIDRELACVPNNSQEGESYRKAMYS 296
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK-QKTLL 239
A NFAW NR +T R F K T D+DM ++YDVSHNIAK E H +DG+ + L+
Sbjct: 297 ALNFAWSNRQMITHWTRNTFEKVMGMTEGDIDMKLVYDVSHNIAKVERHTIDGEGTRDLV 356
Query: 240 VHRKVSEPSHP 250
+HRK + + P
Sbjct: 357 IHRKGATRAFP 367
>gi|440298181|gb|ELP90822.1| hypothetical protein EIN_027210 [Entamoeba invadens IP1]
Length = 535
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 151/254 (59%), Gaps = 21/254 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+K I D ++ L G+++ + +GY W ED +HCEE G++ ADPS
Sbjct: 180 LFKKVPSGVGTKASIDFKEEDFDKLLTGGLEYMVEQGYAWEEDLKHCEEGGKIAGADPSL 239
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG Q+GTLG+GNHY E+Q VDEI+D AA MGI +VGQVCVM+H GSRG G
Sbjct: 240 VSKVAKSRGHQQVGTLGSGNHYLEVQTVDEIFDAEAAKAMGITEVGQVCVMVHCGSRGLG 299
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C YV +MK+ + D+QL NS++GQ Y +M
Sbjct: 300 HQV---------CQDYV--------AISMKKGHSNPVDKQLTGVPFNSEDGQKYFSAMNC 342
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFA+ NR +T+ R+AF + M ++YDV HNIAK EEH ++GK+ ++
Sbjct: 343 CANFAFANRGMITYQIREAFENIMGIKAKKMGMGLVYDVCHNIAKVEEHEIEGKKVKCVI 402
Query: 241 HRKVSE----PSHP 250
HRK + P+HP
Sbjct: 403 HRKGATRAFPPNHP 416
>gi|385805796|ref|YP_005842194.1| hypothetical protein FFONT_0754 [Fervidicoccus fontis Kam940]
gi|383795659|gb|AFH42742.1| UPF0027 protein PF1615 [Fervidicoccus fontis Kam940]
Length = 949
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 166/258 (64%), Gaps = 18/258 (6%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P G+GS+G I + L+E L G++W++ G+ +ED EH EE G AD SKVS
Sbjct: 595 NVPSGLGSEGKIKVTPTILDEVLNRGVEWAVEHGFGRSEDPEHIEERGSWSIADSSKVSS 654
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RAK RG P+LG+LG+GNH+ E+Q+V++I+D+ A +GI GQV VMIH+GSRG GHQV
Sbjct: 655 RAKSRGAPELGSLGSGNHFLEVQVVEKIFDRKIAEFLGITHEGQVTVMIHTGSRGLGHQV 714
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A+ D L MEK M++ DR+LA NS E QDY+K+MAAAAN
Sbjct: 715 AS--------------DYLQIMEKVMRKYGTVPPDRELASIPFNSPEAQDYVKAMAAAAN 760
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+AW NR +T R++F + F T D L + +IYDV+HNIAK EEH V+GK+K L+VHRK
Sbjct: 761 YAWTNRQLITHWVRESFKEVFKTDDDKLGLEIIYDVAHNIAKIEEHEVNGKRKRLVVHRK 820
Query: 244 VSE----PSHPGVSRNKK 257
+ P HP + ++ K
Sbjct: 821 GATRAFPPGHPDIPKDHK 838
>gi|288559683|ref|YP_003423169.1| hypothetical protein mru_0426 [Methanobrevibacter ruminantium M1]
gi|288542393|gb|ADC46277.1| hypothetical protein mru_0426 [Methanobrevibacter ruminantium M1]
Length = 482
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 151/243 (62%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVGSKG I + ++ E L+ G W++ G+ W ED + EE GRM A+
Sbjct: 125 LFKNIPSGVGSKGQIRLKDNEINEVLDYGAWWAVERGFGWEEDLKFLEENGRMEEAESEV 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q ++E+YD A G+E G V +MIHSGSRG G
Sbjct: 185 VSKKAKKRGVPQLGSLGSGNHFLEVQKIEEVYDDNVAKAFGLEP-GNVTIMIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L +M+KA + I+ DRQLACA I+S E YLK+MAA
Sbjct: 244 HQICS--------------DYLRKMDKAYRNYKIKLPDRQLACAPIDSPEATGYLKAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR M+ RQ+F + F +D+ M IYDV+HNIAK E H V +LV
Sbjct: 290 GANYAWANRQMMSHWVRQSFEEVFKRDAEDMGMSTIYDVAHNIAKKEVHKVKNSHMEVLV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|305662579|ref|YP_003858867.1| hypothetical protein [Ignisphaera aggregans DSM 17230]
gi|304377148|gb|ADM26987.1| protein of unknown function UPF0027 [Ignisphaera aggregans DSM
17230]
Length = 480
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 164/250 (65%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVG+ G I + R+L++ LE G W+ R+GY D +H E G++ AD SK
Sbjct: 123 LFRNIPSGVGATGKIRLTERELDQVLEEGAQWAYRQGYGTEHDIDHTESRGKLDWADASK 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK RG PQLGTLG+GNH+ EIQ+VD+IY A K+GI + GQ+ +M+H+GSRG G
Sbjct: 183 VSRRAKDRGAPQLGTLGSGNHFLEIQVVDKIYIPEVAKKVGIYEEGQITIMVHTGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D LV ME+AM++ I DR+LA NS+EGQDY +MAA
Sbjct: 243 HQVAS--------------DYLVIMERAMRKYGINVPDRELAAVPFNSQEGQDYFAAMAA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R++FAK + P+ L + +IYDV+HNIAK EEH + ++ L+V
Sbjct: 289 AANYAWANRQLITHWARESFAKAMGSDPEHLGIKMIYDVAHNIAKVEEHEYENRRIKLVV 348
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 349 HRKGATRAFP 358
>gi|373459296|ref|ZP_09551063.1| protein of unknown function UPF0027 [Caldithrix abyssi DSM 13497]
gi|371720960|gb|EHO42731.1| protein of unknown function UPF0027 [Caldithrix abyssi DSM 13497]
Length = 484
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 162/255 (63%), Gaps = 20/255 (7%)
Query: 1 MFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F IP GVGS I ++ DL++ + G+ W +++GY AED E EE GRM AD S
Sbjct: 126 LFKAIPTGVGSSHAIKKLSKNDLKKVAQEGVQWVIQQGYGKAEDLEVIEEKGRMPFADFS 185
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RGL QLGTLG+GNH+ E+ +VD IYD+ AA+ +G+ + GQ+ V+IHSGSRGF
Sbjct: 186 AVSQRAIERGLDQLGTLGSGNHFLEVDVVDRIYDEQAAAALGLFE-GQIVVLIHSGSRGF 244
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+Q+ C+ D L M KA ++ +++ DRQLA A I S EGQDY +M+
Sbjct: 245 GYQI----CD----------DYLKVMSKAAQKYHLDLPDRQLAAAPIQSPEGQDYFAAMS 290
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR + L R+ F FN + +L +++YDVSHNIAK E H V ++KT+
Sbjct: 291 CAANFAWSNRQVIMDLARRVFKHVFNISDANLQFNLVYDVSHNIAKKETHKVGDREKTVC 350
Query: 240 VHRKVSE----PSHP 250
VHRK + P HP
Sbjct: 351 VHRKGATRALAPGHP 365
>gi|308271516|emb|CBX28124.1| UPF0027 protein TK0358 [uncultured Desulfobacterium sp.]
Length = 477
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 152/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +IP GVGS G I + + ++ L+ G W+LR G + D EH E+YG M NADP
Sbjct: 120 LYQNIPSGVGSTGNIKLAYSEEKKVLKEGSKWALRHGMAYESDIEHTEDYGCMSNADPDT 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +A +RGL QLGTLG+GNH+ EI +VD+IYD A G+ + GQV VM+HSGSRG G
Sbjct: 180 LSDKALERGLKQLGTLGSGNHFLEIGLVDKIYDSDVARVFGLFE-GQVTVMLHSGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ D L M K +K+ E DRQLACA I S EG Y +MA
Sbjct: 239 YQV----CD----------DFLAHMAKNIKKIGFEIPDRQLACAMIQSSEGMRYFNAMAC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ P DL M+++YDV HNIAK E H+VDGK++ L V
Sbjct: 285 AANYAWANRQILMHKAREVLMHVLQIGPRDLGMNLVYDVCHNIAKKETHVVDGKKRVLCV 344
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 345 HRKGATRAFP 354
>gi|410722087|ref|ZP_11361402.1| hypothetical protein B655_1871 [Methanobacterium sp. Maddingley
MBC34]
gi|410597893|gb|EKQ52500.1| hypothetical protein B655_1871 [Methanobacterium sp. Maddingley
MBC34]
Length = 482
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MF ++P GVGSKG I + ++++ L+ G W++ GY W ED E EE G M +AD ++
Sbjct: 125 MFRNVPSGVGSKGKIRLKEGEIDDVLDNGARWAVENGYGWDEDLEFLEENGCMADADSAR 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q V+EI+D AA G+ED GQV V+IHSGSRG G
Sbjct: 185 VSDKAKKRGIPQLGSLGSGNHFLEVQKVEEIFDTDAAGTFGLED-GQVTVLIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L M+KA KR ++ DRQLACA + S+E QDY +MAA
Sbjct: 244 HQVCS--------------DYLRTMDKAAKRYQMDLPDRQLACAPVESEEAQDYFAAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F + F+ +DL M ++YDV+HNIAK E H + G++ L V
Sbjct: 290 AANYAWTNRQMIVHWVRESFEQVFHKDAEDLGMGIVYDVAHNIAKKETHDIKGRKTQLYV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|119719187|ref|YP_919682.1| hypothetical protein Tpen_0269 [Thermofilum pendens Hrk 5]
gi|119524307|gb|ABL77679.1| protein of unknown function UPF0027 [Thermofilum pendens Hrk 5]
Length = 482
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 159/261 (60%), Gaps = 18/261 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS + ++ +L+ LE G++W++ GY W ED EH EE GRM AD
Sbjct: 124 LFRKIPSGLGSTSGLRLSHAELDRVLEEGVEWAIERGYGWREDMEHIEEKGRMEGADADA 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLG+GNH+ E+Q VD+IYD A GIE GQV VMIH+GSRG G
Sbjct: 184 VSNEAKQRGSNQLGTLGSGNHFLEVQRVDKIYDPEVAKVFGIEREGQVTVMIHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+ +++ N+ DR+L S E + Y +M A
Sbjct: 244 HQVAS--------------DYLKIMERVVRKYNMPLPDRELVSVPATSPEAERYFAAMKA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F F T PD L ++VIYDV+HNIAK EEH+VDGK+ + V
Sbjct: 290 AANFAWTNRQVITHWVRESFRAVFKTDPDKLGLNVIYDVAHNIAKLEEHVVDGKRVKVYV 349
Query: 241 HRKVS----EPSHPGVSRNKK 257
HRK + P HP + + K
Sbjct: 350 HRKGATRAFPPGHPEIPADYK 370
>gi|296109480|ref|YP_003616429.1| protein of unknown function UPF0027 [methanocaldococcus infernus
ME]
gi|295434294|gb|ADG13465.1| protein of unknown function UPF0027 [Methanocaldococcus infernus
ME]
Length = 945
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 162/250 (64%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKGII + +++ LE G W+++EG+ W ED ++ EE G M +AD S
Sbjct: 588 LFRNVPSGLGSKGIIKFSKDVMDDVLEEGAKWAVKEGFGWKEDIKYIEENGCMEDADSSY 647
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V++I+D+ AA G+ QV +++H+GSRG G
Sbjct: 648 VSEKAKDRGRAQLGSLGSGNHFLEVQYVEQIFDEEAAEAYGLFK-DQVVILVHTGSRGLG 706
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +EKA K+ NI DRQLACA S+EGQ Y K+M
Sbjct: 707 HQVCT--------------DYLKILEKAYKKYNISIPDRQLACAPFESEEGQAYYKAMCC 752
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T R++F + F +DL+M ++YDV+HNIAK EEH ++ K+ ++V
Sbjct: 753 SANYAWANRQMITHWVRESFEEVFKIHAEDLEMEIVYDVAHNIAKKEEHRIEKKKVKVVV 812
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 813 HRKGATRAFP 822
>gi|333988031|ref|YP_004520638.1| hypothetical protein MSWAN_1826 [Methanobacterium sp. SWAN-1]
gi|333826175|gb|AEG18837.1| protein of unknown function UPF0027 [Methanobacterium sp. SWAN-1]
Length = 482
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 160/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSKG I + ++++ LE G W++ GY W D ++ EE GRM +AD SK
Sbjct: 125 LFKNVPSGVGSKGKIRLKEGEIDDVLENGAQWAVENGYGWESDLKYLEENGRMESADSSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ EIQ +DEI+D+ A GIE Q+ VMIH+GSRG G
Sbjct: 185 VSDKAKKRGIPQLGSLGSGNHFLEIQRMDEIFDEKVAKTFGIEK-DQITVMIHTGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L M+KA K+ NI DRQLACA ++S+E QDY +MAA
Sbjct: 244 HQICS--------------DYLRTMDKAYKKYNINLPDRQLACAPVDSQEAQDYFGAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F + F +D++M ++YDV+HNIAK E H + G+ + V
Sbjct: 290 AANYAWTNRQMIVHWVRESFEQVFKRDAEDMNMGIVYDVAHNIAKKETHKIKGRDTEVYV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|325968173|ref|YP_004244365.1| hypothetical protein VMUT_0652 [Vulcanisaeta moutnovskia 768-28]
gi|323707376|gb|ADY00863.1| hypothetical protein VMUT_0652 [Vulcanisaeta moutnovskia 768-28]
Length = 490
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 164/252 (65%), Gaps = 16/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G++ ++ DL++ L+ G+DW+L +GY W++DK EE+G AD SK
Sbjct: 130 IFKLVPAGVGETGLLRLSFGDLDKVLDDGVDWALSKGYGWSDDKNFIEEFGHYEGADSSK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG +LGT G+GNH+ EIQ+V++I+D A ++GIE GQV V+IH+GSRG G
Sbjct: 190 VSQRAKERGKDELGTTGSGNHFIEIQVVNKIFDANLAKRLGIEQEGQVMVLIHTGSRGLG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + E MK+ + DR+LA +++KE QDYL +M A
Sbjct: 250 HQVAT--------------DYIRVAENKMKQWGLFLPDRELAAMPLSTKEAQDYLAAMKA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AAN+AW NR +T R+AF + F PD L + ++YDV+HNIAK E+H++D G + +
Sbjct: 296 AANYAWTNRQIITHWVREAFRRAFGKDPDKLGLEIVYDVAHNIAKIEDHVIDDEGHVRRV 355
Query: 239 LVHRKVSEPSHP 250
LVHRK + S P
Sbjct: 356 LVHRKGATRSFP 367
>gi|76152960|gb|AAX24630.2| SJCHGC04301 protein [Schistosoma japonicum]
Length = 278
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 113/125 (90%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPM+A+ LEEALEMGMDWSLR+GY+WAEDKEHCEEYGRML ADPSK
Sbjct: 147 LFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V+E + + AA+KMGI + Q+ +MIH GSRG G
Sbjct: 207 VSSRAKKRGLPQLGTLGAGNHYAEIQVVEEDFRQHAATKMGINHLNQIVLMIHCGSRGMG 266
Query: 121 HQVAT 125
HQVAT
Sbjct: 267 HQVAT 271
>gi|288931663|ref|YP_003435723.1| hypothetical protein Ferp_1294 [Ferroglobus placidus DSM 10642]
gi|288893911|gb|ADC65448.1| protein of unknown function UPF0027 [Ferroglobus placidus DSM
10642]
Length = 480
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 146/227 (64%), Gaps = 15/227 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + ++ ++L+E G W++ GY + ED +HCEE G M A P
Sbjct: 123 LFVAVPSGVGSEGRLRVSDKELDEIFVSGARWAVENGYGYEEDLKHCEENGAMPGAKPEV 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VD+I+D+ A G+E+ G V VM+H GSRG G
Sbjct: 183 VSRKARDRGRPQLGTLGSGNHFLEVQYVDKIFDEEIAKAFGLEE-GMVTVMVHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E+A+K+ I DRQLACA INSKEGQDY MAA
Sbjct: 242 HQVCT--------------DFLQVLERAVKKYGIYLPDRQLACAPINSKEGQDYFAGMAA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
+AN+AW NR +T R+ F K F + +DL M ++YDV+HNIAK E
Sbjct: 288 SANYAWCNRQIITHWVRETFQKVFRMSEEDLGMDLVYDVAHNIAKFE 334
>gi|374629749|ref|ZP_09702134.1| protein of unknown function UPF0027 [Methanoplanus limicola DSM
2279]
gi|373907862|gb|EHQ35966.1| protein of unknown function UPF0027 [Methanoplanus limicola DSM
2279]
Length = 482
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 161/256 (62%), Gaps = 21/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +P GVG+K + ++ ++LE+ + G W++ GY +D CE+ G + AD
Sbjct: 127 LFDTVPTGVGNKSALRLSEKELEDVMLEGAGWAVNNGYGTKDDIIRCEDGGCLGGADTEY 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG+PQ GTLG+GNH+ EIQ VDEI+D AA K G+ + Q+C+MIH GSRG G
Sbjct: 187 VSRKARQRGMPQCGTLGSGNHFLEIQSVDEIFDDEAAEKFGLV-MDQICIMIHCGSRGLG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A K+ I+ D QLACA + S EG+ YL +MAA
Sbjct: 246 HQVCT--------------DHLKDLEAASKKYKIKLPDSQLACAPLKSPEGKAYLSAMAA 291
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T L R+ K + D++ + +YDV+HN+AK EEH+VDG+++TL V
Sbjct: 292 SANYAWANRQIITHLVREIICKSPDIEYDEIKL--VYDVTHNVAKFEEHIVDGEKQTLCV 349
Query: 241 HRKVSE----PSHPGV 252
HRK + P PG+
Sbjct: 350 HRKGATRAFGPGSPGL 365
>gi|307596344|ref|YP_003902661.1| hypothetical protein Vdis_2242 [Vulcanisaeta distributa DSM 14429]
gi|307551545|gb|ADN51610.1| protein of unknown function UPF0027 [Vulcanisaeta distributa DSM
14429]
Length = 484
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 163/252 (64%), Gaps = 16/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G++ ++ DL++ L+ G+DW+L +GY W +DK EE+G AD SK
Sbjct: 124 IFKLVPAGVGETGLLKLSFGDLDKVLDEGVDWALSKGYGWGDDKNFIEEFGHYEGADSSK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG +LGT G+GNH+ EIQ+V++I+D A ++GIE GQV V+IH+GSRG G
Sbjct: 184 VSQRAKERGKDELGTTGSGNHFIEIQVVNKIFDANLAKRLGIEQEGQVMVLIHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + E MK+ + DR+LA ++++E QDYL +M A
Sbjct: 244 HQVAT--------------DYIRVAENKMKQWGLFLPDRELASMPLSTREAQDYLAAMKA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AAN+AW NR +T R+AF + F PD L + ++YDV+HNIAK E+H++D G + +
Sbjct: 290 AANYAWTNRQIITHWVREAFRRVFGKDPDKLGLEIVYDVAHNIAKIEDHVIDDEGHVRRV 349
Query: 239 LVHRKVSEPSHP 250
LVHRK + S P
Sbjct: 350 LVHRKGATRSFP 361
>gi|408382456|ref|ZP_11180000.1| hypothetical protein A994_08371 [Methanobacterium formicicum DSM
3637]
gi|407814811|gb|EKF85434.1| hypothetical protein A994_08371 [Methanobacterium formicicum DSM
3637]
Length = 480
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 160/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MF ++P GVGSKG I + ++++ L+ G W++ GY W ED E+ EE G M++AD ++
Sbjct: 123 MFRNVPSGVGSKGKIRLKKGEIDDVLDNGARWAVENGYGWEEDLEYLEENGCMVDADSAR 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q V+EI+D AA G+E GQV V+IHSGSRG G
Sbjct: 183 VSDKAKKRGIPQLGSLGSGNHFLEVQKVEEIFDAEAARTFGLE-TGQVTVLIHSGSRGCG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L M+KA K ++ DRQLACA + S+E QDY +MAA
Sbjct: 242 HQVCS--------------DYLRTMDKAAKHYKLDLPDRQLACAPVESEEAQDYFAAMAA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F + F+ +D+ M ++YDV+HNIAK E H + G+ L V
Sbjct: 288 AANYAWTNRQMIVHWVRESFEQVFHKDAEDMGMGIVYDVAHNIAKKETHTIKGRNTQLYV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>gi|52549702|gb|AAU83551.1| replication factor C subunit [uncultured archaeon GZfos31B6]
Length = 374
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 154/250 (61%), Gaps = 18/250 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+K + ++ +L LE G W++ +GY +ED EHCEE GR+ K
Sbjct: 20 LFRSVPSGVGAKSKLKVSDSELRSVLEDGAGWAVEQGYGVSEDLEHCEENGRIELPGELK 79
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS + KRG PQLGTLG+GNH+ E+Q V EIYD+ + GI G + +MIH GSRG G
Sbjct: 80 VSDKVMKRGRPQLGTLGSGNHFLEVQCVREIYDQDTSDAFGIHK-GDITIMIHCGSRGAG 138
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +EKA ++ IE DRQLACA + SKEGQ+Y +M A
Sbjct: 139 HQICT--------------EHLRVLEKAARKYGIELVDRQLACAPVQSKEGQEYFTAMCA 184
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R+ F + F + D++M ++YDV+HN+AK EEH +DGK + + V
Sbjct: 185 GANYAWANRQMITHWVRETFYRFFGS---DIEMDLVYDVAHNVAKLEEHTIDGKPRMVYV 241
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 242 HRKGATRAFP 251
>gi|206890831|ref|YP_002249541.1| replication factor C subunit [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742769|gb|ACI21826.1| replication factor C subunit [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 482
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 156/250 (62%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ HIP GVGS G I ++ +D E ++ G W++ +G+ AED + E +G + ADP
Sbjct: 125 LYAHIPSGVGSTGKIKLSPKDEREVIKKGAIWAVEQGFGDAEDLQRIESHGCLEGADPDA 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +A +RG Q GTLG+GNH+ E+Q V E+Y+ A+ MG+ GQV VMIH+GSRGFG
Sbjct: 185 ISQKAYERGRAQQGTLGSGNHFLEVQYVAEVYEPEIATVMGLSK-GQVTVMIHTGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ C+ D + M +A K+ IE D++LAC S+EGQ Y +M
Sbjct: 244 HQI----CD----------DYVRVMLQAAKKYGIELPDKELACVPFRSREGQQYFSAMKG 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F + FN +P DL M V++DV+HNIAK E H ++G++K L+V
Sbjct: 290 AANYAWANRQCLMHWTREVFLRLFNLSPKDLGMKVVFDVAHNIAKEEFHFINGERKRLIV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|73748627|ref|YP_307866.1| hypothetical protein cbdb_A801 [Dehalococcoides sp. CBDB1]
gi|289432652|ref|YP_003462525.1| hypothetical protein DehalGT_0703 [Dehalococcoides sp. GT]
gi|452203612|ref|YP_007483745.1| putative RtcB family protein [Dehalococcoides mccartyi DCMB5]
gi|452205047|ref|YP_007485176.1| putative RtcB family protein [Dehalococcoides mccartyi BTF08]
gi|73660343|emb|CAI82950.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|288946372|gb|ADC74069.1| protein of unknown function UPF0027 [Dehalococcoides sp. GT]
gi|452110671|gb|AGG06403.1| putative RtcB family protein [Dehalococcoides mccartyi DCMB5]
gi|452112103|gb|AGG07834.1| putative RtcB family protein [Dehalococcoides mccartyi BTF08]
Length = 486
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 156/250 (62%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G I ++ D++ + G W+L +G AED + EE G + A+P K
Sbjct: 128 LFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGEAEDIKLTEESGSLSGANPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ E+Q+VDEI+D A+ G++ +GQV +IH+GSRG G
Sbjct: 188 VSNKAKTRGASQLGTLGSGNHFLEVQVVDEIFDPEVAAVFGVQALGQVLFLIHTGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D + + +A+K+ I DRQLACA + S +GQ+YL +MA
Sbjct: 248 HQVCT--------------DYVQLLNEAVKKYGINLPDRQLACAPLKSDDGQNYLAAMAC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R AF K F DL M IYDV+HNIAK EEHMVDGK + + V
Sbjct: 294 AANYAWANRQCITHWARDAFMKVFEKGRLDLGMDQIYDVAHNIAKIEEHMVDGKVQNVCV 353
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 354 HRKGATRSFP 363
>gi|270308129|ref|YP_003330187.1| hypothetical protein DhcVS_727 [Dehalococcoides sp. VS]
gi|270154021|gb|ACZ61859.1| hypothetical protein DhcVS_727 [Dehalococcoides sp. VS]
Length = 486
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 155/250 (62%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP GVG+ G I ++ D++ + G W+L +G AED + EE G + A+P +
Sbjct: 128 LFDKIPSGVGTGGNIKLSLTDIDNVMTRGGSWALEKGMGEAEDVKLTEESGSLSGANPDE 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS++AK RG QLGTLG+GNH+ E+Q+VDEI+D A G++ GQV +IH+GSRG G
Sbjct: 188 VSIKAKTRGSSQLGTLGSGNHFLEVQVVDEIFDTEVADVFGVQQTGQVLFLIHTGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D + + + K+ I DRQLACA + S++GQDYL +MA
Sbjct: 248 HQVCT--------------DYVQLLNEMSKKYGINLPDRQLACAPLKSEDGQDYLAAMAC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R+ F K F P DL M IYDV+HNIAK EEH VDGK + + V
Sbjct: 294 AANYAWANRQCITQWVREVFMKIFEKGPRDLGMSQIYDVAHNIAKIEEHTVDGKIQNVCV 353
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 354 HRKGATRSFP 363
>gi|284103085|ref|ZP_06386065.1| Protein of unknown function, UPF0027 [Candidatus Poribacteria sp.
WGA-A3]
gi|283830287|gb|EFC34527.1| Protein of unknown function, UPF0027 [Candidatus Poribacteria sp.
WGA-A3]
Length = 483
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 148/245 (60%), Gaps = 20/245 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGSKG + ++ R L+E + G WS+ +GY W D H EE G + ADP
Sbjct: 127 LFRTVPAGVGSKGFVKLSRRGLQEVMRKGARWSVDQGYGWDSDLTHTEEEGCLAGADPEH 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS +A +RG+ QLGTLG+GNHY E+Q+V D IYD+ AA + GI Q+ +M+H GSRG
Sbjct: 187 VSEQACQRGMAQLGTLGSGNHYLEVQVVRNDRIYDRHAAEQFGIHGHDQIVIMVHCGSRG 246
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
GHQV T D + EKAMKR I D+QLACA S+EGQ Y +M
Sbjct: 247 LGHQVGT--------------DYVRIFEKAMKRYGITVKDQQLACAPYQSQEGQHYFAAM 292
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAN A+ NR +T R+AF F +P++L M IYDV+HNIAK E + +++
Sbjct: 293 NCAANTAFANRQIITHQIREAFRTVFRESPEELGMRQIYDVAHNIAKVERY----EKQDF 348
Query: 239 LVHRK 243
LVHRK
Sbjct: 349 LVHRK 353
>gi|292492963|ref|YP_003528402.1| hypothetical protein Nhal_2955 [Nitrosococcus halophilus Nc4]
gi|291581558|gb|ADE16015.1| protein of unknown function UPF0027 [Nitrosococcus halophilus Nc4]
Length = 486
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 149/246 (60%), Gaps = 17/246 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G++ ++ + + + G W +++G W ED E EE G + ADP+K
Sbjct: 126 LFKQIPAGVGSSGLLKVSRSEFRQVCQQGARWCVQQGLGWEEDLERTEEGGLIGGADPAK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S RA RGL QLGTLG+GNHY EIQ++ + IYD A G++ QV +M H GSRG
Sbjct: 186 ISERAIDRGLNQLGTLGSGNHYLEIQVIHPENIYDPALARFFGLDLPEQVVIMFHCGSRG 245
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAM-KRDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L + K M + +E DR+LACA +S EGQDY +
Sbjct: 246 FGHQVAT--------------DYLQRFLKVMTSKYGLEVRDRELACAPFHSPEGQDYFAA 291
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A N ++ NR + R+ F++ + +DL MH+IYDV+HN AK E H V+GKQ+T
Sbjct: 292 MKCALNMSFANRQVILHRVREVFSEVLGRSAEDLGMHMIYDVAHNTAKLEPHQVNGKQRT 351
Query: 238 LLVHRK 243
LLVHRK
Sbjct: 352 LLVHRK 357
>gi|294495120|ref|YP_003541613.1| hypothetical protein Mmah_0438 [Methanohalophilus mahii DSM 5219]
gi|292666119|gb|ADE35968.1| protein of unknown function UPF0027 [Methanohalophilus mahii DSM
5219]
Length = 493
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 152/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGSK I + +LE G W++ +GY D HCE G + DP++
Sbjct: 136 LFKAVPSGVGSKSRIRASESELEAIFTNGSRWAVEQGYGVEADLTHCEGEGCIEGGDPAQ 195
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQLGTLG+GNH+ E+Q VDEIYD AA ++ GQ+ M+H GSRG G
Sbjct: 196 VSAKARKRGRPQLGTLGSGNHFLELQYVDEIYDPVAAEAFNLKQ-GQLTFMVHCGSRGAG 254
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L + +A+++ I+ D+QLACA S+E Q Y +MA+
Sbjct: 255 HQVCT--------------DHLRNLTRAVEKYKIDLPDKQLACAPAQSEEAQAYFGAMAS 300
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + CR+ F +Q N D+L + ++YDV+HN+AK EEH V+G +K + V
Sbjct: 301 AANYAWTNRQIIMHHCREVFEQQMNMDADELGLDLVYDVAHNVAKLEEHNVNGGKKQVYV 360
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 361 HRKGATRAFP 370
>gi|158522581|ref|YP_001530451.1| hypothetical protein Dole_2571 [Desulfococcus oleovorans Hxd3]
gi|158511407|gb|ABW68374.1| protein of unknown function UPF0027 [Desulfococcus oleovorans Hxd3]
Length = 477
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 153/254 (60%), Gaps = 19/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVGS G I + + ++A+ G W+++ G A+D + E+ G M ADP
Sbjct: 120 LYAGVPCGVGSTGGIRLTVAEEKKAISQGASWAVKRGLGDADDIDRTEDCGHMAEADPEA 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG QLGTLG+GNH+ E+ V E++D A++ G+ + G++ +M+HSGSRG G
Sbjct: 180 VSDNALERGRRQLGTLGSGNHFIEVGEVVEVFDPAVAARFGLAE-GRITLMLHSGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C+ D L M K ++ NIE DRQLACA +N+ G+ Y ++A
Sbjct: 239 HQV----CD----------DYLAVMAKEARKSNIELVDRQLACAPVNASAGRRYFSALAC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW+NR M LCR+ F + F P DL M ++YDV HNIAK E H VDG+ + L V
Sbjct: 285 AANFAWINRQVMLHLCREVFMRVFAKGPADLGMRMVYDVCHNIAKKERHEVDGRVRDLCV 344
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 345 HRKGATRAFAPGHP 358
>gi|52550444|gb|AAU84293.1| conserved hypothetical protein [uncultured archaeon GZfos9D1]
Length = 506
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 157/254 (61%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A+P K
Sbjct: 128 LFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLEAANPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++KKRG PQLGTLG+GNH+ E+ +VDEI+D+ A GIE GQV V+IH+G RGF
Sbjct: 188 IDEKSKKRGAPQLGTLGSGNHFLELGVVDEIFDERLAKAYGIEKQGQVTVLIHTGGRGFS 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRD----NIETNDRQLACARINSKEGQDYLK 176
H V C Y L E+ M +D I + +R+LACA ++S G DY +
Sbjct: 248 HGV---------CSYY-----LRSFEREMSKDATLSKILSLERELACAYLSSDTGMDYFE 293
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A AN+A+ NR R+ F ++ +D+++ ++YD++HNIAK EEH+V+GK+K
Sbjct: 294 AMCACANYAFANRQIAMHWVRKVFEDVLRSSAEDMEIKLVYDIAHNIAKEEEHVVEGKRK 353
Query: 237 TLLVHRKVSEPSHP 250
L VHRK + + P
Sbjct: 354 KLCVHRKGATRAFP 367
>gi|39996784|ref|NP_952735.1| hypothetical protein GSU1684 [Geobacter sulfurreducens PCA]
gi|409912203|ref|YP_006890668.1| hypothetical protein KN400_1706 [Geobacter sulfurreducens KN400]
gi|39983672|gb|AAR35062.1| protein of unknown function UPF0027 [Geobacter sulfurreducens PCA]
gi|298505795|gb|ADI84518.1| protein of unknown function UPF0027 [Geobacter sulfurreducens
KN400]
Length = 485
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 143/245 (58%), Gaps = 15/245 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS G + ++ + E G W L+ GY W ED E EE+G AD +K
Sbjct: 125 LFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTEEHGCFTGADATK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS RA RG Q+GTLG+GNHY E+Q+ + I+D+ A GI QV +M H GSRG
Sbjct: 185 VSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQVAT + L MEK + I TNDR+LACA S+EGQDY +M
Sbjct: 245 FGHQVATDYLQLF----------LSVMEK---KYGIRTNDRELACAPFRSREGQDYFAAM 291
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A N A+ NR + R+ F+ F P DL M ++YDV+HN AK E H+VDGK++ L
Sbjct: 292 KCAVNMAFANRQVILHRIREVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKREL 351
Query: 239 LVHRK 243
LVHRK
Sbjct: 352 LVHRK 356
>gi|147669386|ref|YP_001214204.1| hypothetical protein DehaBAV1_0742 [Dehalococcoides sp. BAV1]
gi|146270334|gb|ABQ17326.1| protein of unknown function UPF0027 [Dehalococcoides sp. BAV1]
Length = 486
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 155/250 (62%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F I GVGS G I ++ D++ + G W+L +G AED + EE G + A+P K
Sbjct: 128 LFSKISSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGEAEDIKLTEESGSLSGANPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ E+Q+VDEI+D A+ G++ +GQV +IH+GSRG G
Sbjct: 188 VSNKAKTRGASQLGTLGSGNHFLEVQVVDEIFDPEVAAVFGVQALGQVLFLIHTGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D + + +A+K+ I DRQLACA + S +GQ+YL +MA
Sbjct: 248 HQVCT--------------DYVQLLNEAVKKYGINLPDRQLACAPLKSDDGQNYLAAMAC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R AF K F DL M IYDV+HNIAK EEHMVDGK + + V
Sbjct: 294 AANYAWANRQCITHWARDAFMKVFEKGRRDLGMDQIYDVAHNIAKIEEHMVDGKVQNVCV 353
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 354 HRKGATRSFP 363
>gi|52549275|gb|AAU83124.1| conserved hypothetical protein [uncultured archaeon GZfos26F9]
Length = 506
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 157/254 (61%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A+P K
Sbjct: 128 LFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLKAANPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++KKRG PQLGTLG+GNH+ E+ +VDEI+D+ A + GIE+ GQV V+IH+G RGF
Sbjct: 188 IDEKSKKRGAPQLGTLGSGNHFLELGVVDEIFDERLAKEYGIEEKGQVTVLIHTGGRGFS 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDN----IETNDRQLACARINSKEGQDYLK 176
H V C Y L E+ M +D I + +R+LACA ++S G DY +
Sbjct: 248 HGV---------CSYY-----LRSFEREMSKDTTLSKILSLERELACAYLSSDMGMDYFE 293
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A AN+A+ NR R+ F +D+++ ++YD++HNIAK EEH+V+GK+K
Sbjct: 294 AMCACANYAFANRQIAMHWVRKVFEDVLRRKAEDMEIRLVYDIAHNIAKEEEHVVEGKRK 353
Query: 237 TLLVHRKVSEPSHP 250
L VHRK + + P
Sbjct: 354 KLCVHRKGATRAFP 367
>gi|261349679|ref|ZP_05975096.1| RtcB protein [Methanobrevibacter smithii DSM 2374]
gi|288861635|gb|EFC93933.1| RtcB protein [Methanobrevibacter smithii DSM 2374]
Length = 482
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 155/243 (63%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVGSKG I + ++++ L G +W++ GY W ED E EE GR+ AD +K
Sbjct: 125 LFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVLEENGRIKEADSAK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG+PQLG+LG+GNH+ EIQ+VDEIY+ A G+E G V +MIHSGSRG G
Sbjct: 185 VSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEK-GMVVIMIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L M+KA K I+ DRQLACA +S+E QDYLK+M A
Sbjct: 244 HQVCS--------------DYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR MT R+ F + D++M ++YDV+HNIAK E H G L+V
Sbjct: 290 AANYAWANRQMMTHWIRETFEDILGKSAKDMEMDIVYDVAHNIAKQETHKFKGNDIKLVV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|298241605|ref|ZP_06965412.1| protein of unknown function UPF0027 [Ktedonobacter racemifer DSM
44963]
gi|297554659|gb|EFH88523.1| protein of unknown function UPF0027 [Ktedonobacter racemifer DSM
44963]
Length = 485
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 150/254 (59%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P GVG G+ + R++ E ++ G W++ EGY ED E EE G + A P
Sbjct: 127 LFNTLPSGVGGYGMRRLTEREMLEVMKRGSAWAVEEGYGVEEDLEVTEENGCLKGARPEA 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG+ QLG+LG+GNH+AE+Q VD IYD+ AA +GI +GQ+ IH GSRGFG
Sbjct: 187 VSRKALERGVGQLGSLGSGNHFAEVQYVDHIYDQEAAEALGIGQLGQIVTTIHCGSRGFG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A D + E K DRQLAC I+SKEGQDYL +MA
Sbjct: 247 HQIAE--------------DYIKIAEAKQKAYGYHLADRQLACMPIHSKEGQDYLGAMAC 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + R AF+ F DM ++YDV HNIAK EE+ +DG++K + V
Sbjct: 293 AANFAWANRQLLMHGVRDAFSSVFGRKARAKDMPMVYDVCHNIAKMEEYEIDGEKKRVCV 352
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 353 HRKGATRAFPPGHP 366
>gi|397781114|ref|YP_006545587.1| hypothetical protein BN140_1948 [Methanoculleus bourgensis MS2]
gi|396939616|emb|CCJ36871.1| hypothetical protein BN140_1948 [Methanoculleus bourgensis MS2]
Length = 478
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 152/258 (58%), Gaps = 21/258 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG++ + ++ ++L E + G W++ G ED CEE G M A+P
Sbjct: 123 LFSVVPTGVGARSAMRVSNKELTEIMVNGARWAVERGLGTPEDLIRCEEEGAMPGAEPDA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG+PQ+GTLGAGNH+ EIQ+ EI D AAS GI + GQ+C M+H GSRG G
Sbjct: 183 VSAKARQRGMPQIGTLGAGNHFLEIQVAREIIDPEAASVFGIAE-GQICFMVHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L +E A+ + I DRQLACA I+S EG+ Y MA
Sbjct: 242 HQVAT--------------DHLRTLESALGKYQIRLPDRQLACAPIDSPEGRAYYGGMAC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+AF + F D +M +IYDV+HN+AK E H VDG + V
Sbjct: 288 AANYAWTNRQVIMHEARKAFTQVFGIEYD--EMRLIYDVAHNVAKFEHHDVDGAPMEVCV 345
Query: 241 HRKVSE----PSHPGVSR 254
HRK + P PG+ R
Sbjct: 346 HRKGATRAFGPQAPGIPR 363
>gi|148642726|ref|YP_001273239.1| hypothetical protein Msm_0666 [Methanobrevibacter smithii ATCC
35061]
gi|222445779|ref|ZP_03608294.1| hypothetical protein METSMIALI_01421 [Methanobrevibacter smithii
DSM 2375]
gi|148551743|gb|ABQ86871.1| conserved hypothetical protein Msm_0666 [Methanobrevibacter smithii
ATCC 35061]
gi|222435344|gb|EEE42509.1| hypothetical protein METSMIALI_01421 [Methanobrevibacter smithii
DSM 2375]
Length = 482
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 155/243 (63%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVGSKG I + ++++ L G +W++ GY W ED E EE GR+ AD +K
Sbjct: 125 LFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWKEDLEVLEENGRIKEADSAK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG+PQLG+LG+GNH+ EIQ+VDEIY+ A G+E G V +MIHSGSRG G
Sbjct: 185 VSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEK-GMVVIMIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L M+KA K I+ DRQLACA +S+E QDYLK+M A
Sbjct: 244 HQVCS--------------DYLRVMDKAYKNHQIDLADRQLACAPFDSREAQDYLKAMYA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR MT R+ F + D++M ++YDV+HNIAK E H G L+V
Sbjct: 290 AANYAWANRQMMTHWIRETFEDILGKSAKDMEMDIVYDVAHNIAKQETHKFKGNDIKLVV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|432330730|ref|YP_007248873.1| hypothetical protein Metfor_1326 [Methanoregula formicicum SMSP]
gi|432137439|gb|AGB02366.1| hypothetical protein Metfor_1326 [Methanoregula formicicum SMSP]
Length = 478
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 148/243 (60%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+K + + L+E + G W++ GY D CEE G M+ A
Sbjct: 123 LFHVVPTGVGAKSSQKIPSHALDEMMIKGARWAVENGYGNERDLVRCEEAGGMMGASIKT 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG+PQ GTLG+GNH+ E+Q+V EI+D AA GI D GQVC MIH GSRG G
Sbjct: 183 VSAKARQRGIPQGGTLGSGNHFLELQVVREIFDPVAAKAFGIRD-GQVCCMIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A K+ I+ DRQLACA I+S EG+DY +MA+
Sbjct: 242 HQVCT--------------DHLKLLETATKKYQIKLPDRQLACAPISSPEGRDYFSAMAS 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T R+ AK F D +M ++YDV+HN+AK EEH VD K+ + V
Sbjct: 288 SANYAWANRQLITHAVREVLAKMFGIEYD--EMPLVYDVAHNVAKIEEHRVDDKRMQVCV 345
Query: 241 HRK 243
HRK
Sbjct: 346 HRK 348
>gi|119872722|ref|YP_930729.1| hypothetical protein Pisl_1219 [Pyrobaculum islandicum DSM 4184]
gi|119674130|gb|ABL88386.1| protein of unknown function UPF0027 [Pyrobaculum islandicum DSM
4184]
Length = 484
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+I+D+ A GIE GQV VMIH+GSRG G
Sbjct: 185 VSEKAKARGKDQLGTLGSGNHFLEIQVVDKIFDEKVAKVFGIEREGQVLVMIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M+R + DR+LA A +N K +DY+K+MAA
Sbjct: 245 HQVAT--------------DYLLIMERNMRRWGLNLPDRELAAAPLNDKVAEDYIKAMAA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + +IYDV+HNIAK EEH+VD G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLELIYDVAHNIAKLEEHIVDDKGTVRRV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|218781771|ref|YP_002433089.1| hypothetical protein Dalk_3935 [Desulfatibacillum alkenivorans
AK-01]
gi|218763155|gb|ACL05621.1| protein of unknown function UPF0027 [Desulfatibacillum alkenivorans
AK-01]
Length = 477
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 148/256 (57%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVGS G + +N ++ + LE G W+ G D EH EEYG M AD
Sbjct: 120 LYQGIPCGVGSTGFVKLNQKEAKRVLEQGSRWAASRGLGADSDLEHTEEYGCMDAADSEA 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA +RGL QLGTLG+GNH+ EI +V+E+Y+ A G+ + GQV V +HSGSRG G
Sbjct: 180 VSERALQRGLKQLGTLGSGNHFLEIGVVEEVYEPETAGVYGLAE-GQVTVFLHSGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ D L +M K K IE DRQL C+ INSK G++Y +MA
Sbjct: 239 YQV----CD----------DYLARMTKKSKDLGIELPDRQLVCSWINSKMGKEYYSAMAC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + + K + P DL M +IYDV HNIAK E H+VDG + L V
Sbjct: 285 AANYAWANRQILMHQAEEVLLKTLSMGPRDLGMRLIYDVCHNIAKKETHVVDGVSRALCV 344
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP V
Sbjct: 345 HRKGATRAFAPGHPDV 360
>gi|52352411|gb|AAU43700.1| conserved hypothetical protein [uncultured archaeon GZfos26D8]
Length = 506
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 156/254 (61%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A+P K
Sbjct: 128 LFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLKAANPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++KKRG PQLGTLG+GNH+ E+ +VDEI+D+ A + GIE+ GQV V+IH+G RGF
Sbjct: 188 IDEKSKKRGAPQLGTLGSGNHFLELGVVDEIFDERLAKEYGIEEKGQVTVLIHTGGRGFS 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDN----IETNDRQLACARINSKEGQDYLK 176
H V C Y L E+ M +D I + +R+LACA ++S G DY +
Sbjct: 248 HGV---------CSYY-----LRSFEREMSKDTTLSKILSLERELACAYLSSDMGMDYFE 293
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A AN+A+ NR R+ F +D+ + ++YD++HNIAK EEH+V+GK+K
Sbjct: 294 AMCACANYAFANRQIAMHWVRKVFEDVLRRKAEDMGIRLVYDIAHNIAKEEEHVVEGKRK 353
Query: 237 TLLVHRKVSEPSHP 250
L VHRK + + P
Sbjct: 354 KLCVHRKGATRAFP 367
>gi|269986129|gb|EEZ92443.1| protein of unknown function UPF0027 [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 489
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 159/259 (61%), Gaps = 22/259 (8%)
Query: 1 MFDHIPVGVGSKG------IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML 54
+F+ +P GVGS I + L+E E GMDW++R GY +DKE EE G +
Sbjct: 124 LFNMVPAGVGSNSSQSLLNIKNLGKPALKEIAEEGMDWAIRNGYANRKDKERTEEKGSIK 183
Query: 55 NADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDV-GQVCVMIH 113
+AD SKVS A KRG QLGTLG+GNHY EIQ +++ ++K A+ + ++ + GQV +M H
Sbjct: 184 SADFSKVSEDAFKRGKKQLGTLGSGNHYLEIQEINKDFNKEIANALDLDIIQGQVVIMFH 243
Query: 114 SGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQD 173
+GSRGFGHQ+A+ D + + + + NI DRQLA A NSKEGQD
Sbjct: 244 TGSRGFGHQIAS--------------DYIKKFLEYSSKHNILLKDRQLAYAPFNSKEGQD 289
Query: 174 YLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 233
Y K+M+ NFA+VNR +T+ R+AF K F T DL + V+YDVSHN AK EE+ ++
Sbjct: 290 YFKAMSCGINFAFVNRQIITYQIREAFKKIFKRTEQDLGLEVVYDVSHNTAKIEEYNIEN 349
Query: 234 KQKTLLVHRKVSEPSH-PG 251
K+ +++HRK + S PG
Sbjct: 350 KKTKVIIHRKGATRSFGPG 368
>gi|392374635|ref|YP_003206468.1| hypothetical protein DAMO_1577 [Candidatus Methylomirabilis
oxyfera]
gi|258592328|emb|CBE68637.1| conserved protein of unknown function [Candidatus Methylomirabilis
oxyfera]
Length = 480
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 151/254 (59%), Gaps = 19/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS+G I ++ ++ E L G W++++GY D E G + ADP
Sbjct: 124 LFHEIPTGVGSRGRIRLSKKEAEAPLLKGAAWAVKQGYGEPADLACIESGGCLPGADPDA 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG QLGTLG+GNH+ E+Q V EIYD AA +G+ + GQV VMIH+GSRG G
Sbjct: 184 VSHKALERGSSQLGTLGSGNHFLEVQTVAEIYDPHAAEVLGLFE-GQVTVMIHTGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D+LV+ME+A+ + I+ DRQLAC S+E + YL +M A
Sbjct: 243 HQVCT--------------DSLVEMERAVIKYGIDLPDRQLACTPWTSREAKAYLGAMRA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + ++ K +P L + +YDV+HNI K EEH VDG++ L V
Sbjct: 289 AANFAWNNRQCLAHWTKEVLLKVLGVSPGALGLSTVYDVAHNIVKVEEHEVDGRRMKLAV 348
Query: 241 HRKVS----EPSHP 250
HRK + P HP
Sbjct: 349 HRKGATRAFPPGHP 362
>gi|15679592|ref|NP_276709.1| hypothetical protein MTH1597 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622721|gb|AAB86070.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 488
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSKG I + +++E LE G +W++ GY W +D EE G+M +A K
Sbjct: 131 LFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKMEDASSEK 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q+VDEI+D+ AA G+ G+V VMIHSGSRG G
Sbjct: 191 VSEKAKKRGIPQLGSLGSGNHFLEVQMVDEIFDEEAARVYGVSP-GKVAVMIHSGSRGCG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L M+KA +R I DRQLACA ++S E DY ++MAA
Sbjct: 250 HQICS--------------DYLRLMDKAYRRYKINIPDRQLACAPVDSDEALDYFQAMAA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F F T +D++M ++YDV+HNIAK E H + G++ + V
Sbjct: 296 AANYAWANRQMIVHWVRESFEAVFGMTAEDMEMEIVYDVAHNIAKKEVHTIKGRETEVFV 355
Query: 241 HRK 243
HRK
Sbjct: 356 HRK 358
>gi|93140730|sp|O27634.2|RTCB_METTH RecName: Full=tRNA-splicing ligase RtcB
Length = 482
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSKG I + +++E LE G +W++ GY W +D EE G+M +A K
Sbjct: 125 LFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKMEDASSEK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q+VDEI+D+ AA G+ G+V VMIHSGSRG G
Sbjct: 185 VSEKAKKRGIPQLGSLGSGNHFLEVQMVDEIFDEEAARVYGVSP-GKVAVMIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L M+KA +R I DRQLACA ++S E DY ++MAA
Sbjct: 244 HQICS--------------DYLRLMDKAYRRYKINIPDRQLACAPVDSDEALDYFQAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F F T +D++M ++YDV+HNIAK E H + G++ + V
Sbjct: 290 AANYAWANRQMIVHWVRESFEAVFGMTAEDMEMEIVYDVAHNIAKKEVHTIKGRETEVFV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|52548849|gb|AAU82698.1| conserved hypothetical protein [uncultured archaeon GZfos19A5]
Length = 506
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 155/254 (61%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A+P K
Sbjct: 128 LFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLKAANPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++KKRG PQLGTLG+GNH+ E+ +VDEI+D+ A GIE GQV V+IH+G RGF
Sbjct: 188 IDEKSKKRGAPQLGTLGSGNHFLELGVVDEIFDERLAKAYGIEKQGQVTVLIHTGGRGFS 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRD----NIETNDRQLACARINSKEGQDYLK 176
H V C Y L E+ M +D I + +R+LACA ++S G DY +
Sbjct: 248 HGV---------CSYY-----LRSFEREMSKDATLSKILSLERELACAYLSSDMGMDYFE 293
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A AN+A+ NR R+ F +D+++ ++YD++HNIAK EEH+V+GK+K
Sbjct: 294 AMCACANYAFANRQIAMHWVRKVFEDVLRRKAEDMEIRLVYDIAHNIAKEEEHVVEGKRK 353
Query: 237 TLLVHRKVSEPSHP 250
L VHRK + + P
Sbjct: 354 KLCVHRKGATRAFP 367
>gi|304313958|ref|YP_003849105.1| hypothetical protein MTBMA_c01830 [Methanothermobacter marburgensis
str. Marburg]
gi|302587417|gb|ADL57792.1| conserved hypothetical protein [Methanothermobacter marburgensis
str. Marburg]
Length = 482
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 160/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSKG I + +++E LE G +W++ GY W +D + EE G+M +A K
Sbjct: 125 LFTNVPSGVGSKGKIRLRPGEIDEVLENGAEWAIENGYGWDQDLKFLEENGKMEDASADK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q++DEI+++ AA+ G+ G+V VMIHSGSRG G
Sbjct: 185 VSDKAKKRGIPQLGSLGSGNHFLEVQMIDEIFNEEAAAAYGVSP-GKVAVMIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L M+KA +R I DRQLACA ++S E DY ++MAA
Sbjct: 244 HQVCS--------------DYLRLMDKAYRRYKINIPDRQLACAPVDSDEAMDYFQAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F F + +D++M ++YDV+HNIAK E H V G+ L V
Sbjct: 290 AANYAWANRQMIVHWVRESFESVFGMSAEDMEMEIVYDVAHNIAKREVHTVKGRDTELFV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|116750152|ref|YP_846839.1| hypothetical protein Sfum_2726 [Syntrophobacter fumaroxidans MPOB]
gi|116699216|gb|ABK18404.1| protein of unknown function UPF0027 [Syntrophobacter fumaroxidans
MPOB]
Length = 493
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 146/246 (59%), Gaps = 17/246 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P GVGS G++ ++ + +E G W +R GY W ED E EE+G + AD SK
Sbjct: 133 LFERVPAGVGSTGLLKISQDEFRRVVEEGARWCVRNGYGWDEDLERTEEFGCISGADASK 192
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S +A +RG Q+GTLG+GNHY EIQ+V + I+D A GI QV VM H GSRG
Sbjct: 193 ISNKAVERGYKQIGTLGSGNHYLEIQVVKPENIFDPQLARAFGITLPEQVAVMFHCGSRG 252
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAM-KRDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L K M K+ I DR+LACA NS EG+DY +
Sbjct: 253 FGHQVAT--------------DYLQLFLKVMEKKYGIRILDRELACAPFNSPEGRDYFAA 298
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A N ++ NR + R+ F+ F P ++ +H +YDV+HN AK EEH++DG+ +
Sbjct: 299 MKCAVNMSFANRQVILHRVREVFSDVFGRDPAEMGLHQVYDVAHNTAKLEEHILDGQPRQ 358
Query: 238 LLVHRK 243
LLVHRK
Sbjct: 359 LLVHRK 364
>gi|428168306|gb|EKX37253.1| 3'-phosphate RNA ligase RtcB [Guillardia theta CCMP2712]
Length = 669
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 157/265 (59%), Gaps = 42/265 (15%)
Query: 1 MFDHIPVGVGSKGII-----------------PMNARDLEEALEMGMDWSLREGYIWAED 43
+F +IPVGVG ++ + A++L++ L GM W+ W ED
Sbjct: 295 LFKNIPVGVGEGSVLGQADGKVSATRRAWRELSLYAQELDDILRRGMAWAEERNLCWPED 354
Query: 44 KEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLG-----AGNHYAEIQIVDEIYDKWAAS 98
+E EE G ADP VS RAK RG Q G+LG +GNHYAE+Q+V+E+YD+ AAS
Sbjct: 355 REVVEERGSFEGADPDAVSDRAKARGRNQCGSLGVQSEGSGNHYAEVQVVEEVYDEEAAS 414
Query: 99 KMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETND 158
MG++ +G VC+M+HSGSRG GHQV T DA+ + EK I D
Sbjct: 415 AMGLK-LGTVCIMLHSGSRGLGHQVCT--------------DAVAEAEKG-----ISVVD 454
Query: 159 RQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYD 218
RQLAC RI SKEGQ YL +M AAANFA+VNR M RQ+FA F +L M +YD
Sbjct: 455 RQLACCRIKSKEGQKYLAAMRAAANFAFVNRCLMAKAVRQSFATIFERDEKELGMSTVYD 514
Query: 219 VSHNIAKTEEHMVDGKQKTLLVHRK 243
VSHNIAK EEHMVDG +K +LVHRK
Sbjct: 515 VSHNIAKVEEHMVDGVKKKVLVHRK 539
>gi|327310624|ref|YP_004337521.1| hypothetical protein TUZN_0719 [Thermoproteus uzoniensis 768-20]
gi|326947103|gb|AEA12209.1| hypothetical protein TUZN_0719 [Thermoproteus uzoniensis 768-20]
Length = 483
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 163/256 (63%), Gaps = 21/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + ++A+ G++W++ +G+ W EDKE E+ G ADPSK
Sbjct: 124 IFKLVPPGVGETGHLKLSVSEFDKAIAEGVEWAISKGFGWPEDKEFIEQKGSWDLADPSK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK RG QLGTLG+GNH+ EIQ+VD+I+D+ AA MGIE GQ+ VMIH+GSRGFG
Sbjct: 184 VSERAKNRGKDQLGTLGSGNHFLEIQVVDKIFDEKAAKTMGIEQEGQILVMIHTGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M+ + DR+LA A + K +DYLK+MAA
Sbjct: 244 HQVAT--------------DYLMVMERKMREWGLRLPDRELAAAPLRDKVAEDYLKAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF + F + + + + ++YDV+HNIAK E H VD G + +
Sbjct: 290 AANFAWTNRQIIMHWVREAFRRVFGSI-EKVGLEIVYDVAHNIAKLETHEVDDKGTLRKV 348
Query: 239 LVHRKVS----EPSHP 250
VHRK + P HP
Sbjct: 349 WVHRKGATRAFPPGHP 364
>gi|86607157|ref|YP_475920.1| hypothetical protein CYA_2537 [Synechococcus sp. JA-3-3Ab]
gi|86555699|gb|ABD00657.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
Length = 476
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 155/254 (61%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +PVG+GS+ I ++ +++E LE G +W++ +GY ED E EE+GRM A PS+
Sbjct: 123 LYASVPVGLGSRSKISLSDKEMEAMLEGGAEWAVAQGYGKKEDLERIEEHGRMRGAMPSE 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A++R ++GTLG+GNHY E+Q+VDEIYD AA G++ G+V + IH GSRG G
Sbjct: 183 VSAYARERQRREMGTLGSGNHYLEVQVVDEIYDPKAAESFGLKQ-GEVVITIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M++A K IE DR+LACA + SK GQ YL +M A
Sbjct: 242 HQIGT--------------EYLKKMQQAAKEHGIELPDRELACAPLKSKVGQSYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T RQ FA+ F DL IYDVSHN K E H+++GK++ L V
Sbjct: 288 AINCALANRQIITHWVRQVFAELFPKAELDL----IYDVSHNTCKEETHVIEGKKRRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAFGPGHP 357
>gi|302037832|ref|YP_003798154.1| hypothetical protein NIDE2519 [Candidatus Nitrospira defluvii]
gi|300605896|emb|CBK42229.1| conserved protein of unknown function UPF0027 [Candidatus
Nitrospira defluvii]
Length = 483
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 145/245 (59%), Gaps = 20/245 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + ++ RD + + G W + +GY W ED E EE G + ADP+
Sbjct: 127 LFRRVPAGVGSRGFVNLSRRDFRDVMRQGAGWCIAKGYGWEEDLERIEERGCLDGADPTH 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDE--IYDKWAASKMGIEDVGQVCVMIHSGSRG 118
V+ A +RG+ QLGTLG+GNHY EIQ++ + IYD+ A+ MG+ QV VM+H GSRG
Sbjct: 187 VTDYAVERGINQLGTLGSGNHYLEIQVLSDKGIYDRATAAAMGLTGRDQVVVMVHCGSRG 246
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQVA+ D L EKAM+R I D+QLACA S EGQDY +M
Sbjct: 247 FGHQVAS--------------DYLKVFEKAMRRYGISVKDQQLACAPFRSPEGQDYFGAM 292
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAN A+ NR +T R+AF F + L M +IYDV+HNIAK E + +
Sbjct: 293 NCAANTAFANRQVITHQIREAFETVFGESARRLGMQLIYDVAHNIAKVERY----RDGEW 348
Query: 239 LVHRK 243
LVHRK
Sbjct: 349 LVHRK 353
>gi|374849362|dbj|BAL52380.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 444
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 152/256 (59%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G + ++L + G + ++ G ED EH E GR+ A P
Sbjct: 129 LFQQIPTGVGRTGKYHFDRKELRHLMAEGPRYLIQRGLCTEEDIEHTEAEGRLEGAKPEN 188
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA RG Q GTLG+GNH+ E+Q+VD ++D+ AA MG+ GQVCVMIHSGSRG G
Sbjct: 189 VSDRALDRGAEQCGTLGSGNHFLEVQVVDAVFDQEAAEVMGLFP-GQVCVMIHSGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ DAL + A ++ I+ DRQL CA ++S EGQ Y+ +M A
Sbjct: 248 YQV----CD----------DALHALRNAPEKYGIKLPDRQLLCAPVHSPEGQHYIGAMRA 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T+ R+ F F+ DL M V+YDV HNIAK EEH ++GK+K + V
Sbjct: 294 AANFAWCNRQLLTWQAREVFESVFDKPWQDLQMQVVYDVCHNIAKFEEHEIEGKKKWVWV 353
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP +
Sbjct: 354 HRKGATRAFPPGHPEI 369
>gi|84489450|ref|YP_447682.1| hypothetical protein Msp_0641 [Methanosphaera stadtmanae DSM 3091]
gi|84372769|gb|ABC57039.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 482
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 150/243 (61%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+GS GI + ++++ LE G W++ G+ W ED + EE G M AD S
Sbjct: 125 LFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVENGFGWEEDLKFLEENGCMEGADASL 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG+PQLG+LG+GNH+ EIQ + +IYD+ A G+E QV V+IH+GSRG G
Sbjct: 185 VSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEK-DQVVVLIHTGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+Q+ D L +M+K KR + DRQLACA I+S EGQ+YLK+MAA
Sbjct: 244 YQICA--------------DNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR + R++F + L ++V+YDV+HNI K E+H + + + V
Sbjct: 290 GANYAWTNRQMIQHWVRESFENILKQDAESLGLNVLYDVAHNIIKKEQHKIGKINRNMYV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|269925495|ref|YP_003322118.1| hypothetical protein Tter_0374 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789155|gb|ACZ41296.1| protein of unknown function UPF0027 [Thermobaculum terrenum ATCC
BAA-798]
Length = 477
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 158/261 (60%), Gaps = 23/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG +G I ++ ++L+ LE G +W++REGY ED E+ EE+GRM A P
Sbjct: 124 LYKTIPAGVGEEGEIKLSPKELDRVLEGGAEWAVREGYGVPEDLEYIEEHGRMEGAVPEF 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+V+++YD+ AA G+ + GQ+ V IH GSRG G
Sbjct: 184 VSKEAKKRQKGEMGTLGSGNHYLEVQVVEKVYDQKAAEAFGLWE-GQIVVSIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L+ + KA +R I+ DR+LACA I S EG +Y+ +M A
Sbjct: 243 HQIGT--------------DYLLSLAKAAQRLKIDLPDRELACAPITSPEGHEYIGAMNA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L RQAF K T + +YDVSHN K E+H++DG+++ + +
Sbjct: 289 GINCALANRQILTHLTRQAFRKIIPGT----KVETLYDVSHNTCKREKHVIDGRERFVYI 344
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP + + +
Sbjct: 345 HRKGATRAYGPGHPDIPQRYR 365
>gi|312136715|ref|YP_004004052.1| hypothetical protein Mfer_0490 [Methanothermus fervidus DSM 2088]
gi|311224434|gb|ADP77290.1| protein of unknown function UPF0027 [Methanothermus fervidus DSM
2088]
Length = 482
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 162/243 (66%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVGSKG I + + +++E LE G W++ GY W ED ++ EE G+M +A+ K
Sbjct: 125 LFRNIPSGVGSKGKIRLKSGEIDEVLENGAVWAVENGYGWEEDLKYLEENGKMEDANAEK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAK+RG+PQLGTLG+GNH+ E+Q V++++D+ A G++ GQV +M+H+GSRG G
Sbjct: 185 VSVRAKRRGIPQLGTLGSGNHFLEVQKVEKVFDENAGEVFGLKP-GQVTIMVHTGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L M KA ++ NI DRQLACA +++ E +DY ++MAA
Sbjct: 244 HQICS--------------DYLKVMNKAYRKYNINIPDRQLACAPVDTPEAEDYFQAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F + F +DL M ++YDV+HNIAK E H V+GK + V
Sbjct: 290 AANYAWANRQMIVHWVRESFEQVFGEEAEDLGMKILYDVAHNIAKREVHKVNGKNIEVYV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>gi|352682232|ref|YP_004892756.1| RtcB family protein [Thermoproteus tenax Kra 1]
gi|350275031|emb|CCC81678.1| RtcB family protein, predicted to be implicated in RNA processing
[Thermoproteus tenax Kra 1]
Length = 483
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 164/256 (64%), Gaps = 21/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + ++A+ G++W++ +G+ W EDKE E+ G AD SK
Sbjct: 124 IFRLVPPGVGETGHLKLSTSEFDKAITEGVEWAISKGFGWPEDKEFIEQKGSWDLADASK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK RG QLGTLG+GNH+ EIQ+VD+I+D+ AA MGIE GQ+ VMIH+GSRGFG
Sbjct: 184 VSDRAKNRGKDQLGTLGSGNHFLEIQVVDKIFDERAAKTMGIEQEGQILVMIHTGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M+ + DR+LA A + K +DYLK+MAA
Sbjct: 244 HQVAT--------------DYLMIMERKMREWGLRLPDRELAAAPLKDKVAEDYLKAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF + F + + + + ++YDV+HNIAK E+H+VD G K +
Sbjct: 290 AANFAWTNRQIIMHWVREAFRRVFGSV-EKVGLEIVYDVAHNIAKLEDHVVDDKGTVKRV 348
Query: 239 LVHRKVS----EPSHP 250
VHRK + P HP
Sbjct: 349 WVHRKGATRAFPPGHP 364
>gi|147921429|ref|YP_684757.1| hypothetical protein LRC484 [Methanocella arvoryzae MRE50]
gi|110620153|emb|CAJ35431.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 476
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 154/243 (63%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVGS+ + L + G W++ GY D EHCEE G M AD +K
Sbjct: 122 LYREVPSGVGSESKFRASEDVLTQVFNHGARWAVENGYGVKADLEHCEENGEMKGADSAK 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ EIQ V++IYD+ AA G+E+ G + VMIH GSRG G
Sbjct: 182 VSRKARDRGKPQLGTLGSGNHFLEIQHVEKIYDEAAAKAFGLEE-GGITVMIHCGSRGAG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + +E+A ++ I+ DRQLACA + SKE QDY +MAA
Sbjct: 241 HQICT--------------DYVRTLEQASRKYGIKLADRQLACAPLTSKEAQDYFAAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR ++ R+AF KQF+T DL M ++YDV+HN+AK EEH VDG++K L V
Sbjct: 287 GANYAWANRQMISHWVREAFNKQFHT---DLKMDLVYDVAHNVAKYEEHTVDGEKKKLCV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|330508018|ref|YP_004384446.1| hypothetical protein MCON_2082 [Methanosaeta concilii GP6]
gi|328928826|gb|AEB68628.1| Uncharacterized protein family (UPF0027) [Methanosaeta concilii
GP6]
Length = 474
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 148/243 (60%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P G+GS G + R L E+ G +W++ EGY D + CEE G M ADPS+
Sbjct: 121 LFQAVPSGLGSTGRLHATDRQLTESFLRGAEWAVEEGYGVESDLDFCEENGSMPGADPSQ 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V ++A+KRG PQLGTLG+GNH+ EIQ V+EIY+ A + G+ GQ+ VMIH GSRG G
Sbjct: 181 VGVKARKRGRPQLGTLGSGNHFLEIQRVEEIYNPEIAKRFGLFK-GQITVMIHCGSRGAG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L + KA+++ NI+ D+QLACA + + E Y +M
Sbjct: 240 HQICT--------------DHLDVLSKAVRKYNIDIPDKQLACAPLGTPEADHYFGAMVC 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F + F + + ++YDV+HN+AK EEH V+GK++ L V
Sbjct: 286 AANYAWANRHIIAHWTREVFDRYFPGS----QLQLLYDVAHNVAKIEEHRVEGKKERLYV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|404496480|ref|YP_006720586.1| hypothetical protein Gmet_1619 [Geobacter metallireducens GS-15]
gi|418064792|ref|ZP_12702168.1| protein of unknown function UPF0027 [Geobacter metallireducens
RCH3]
gi|78194083|gb|ABB31850.1| protein of unknown function UPF0027 [Geobacter metallireducens
GS-15]
gi|373563065|gb|EHP89266.1| protein of unknown function UPF0027 [Geobacter metallireducens
RCH3]
Length = 485
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 140/246 (56%), Gaps = 17/246 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS G + ++ + E G W L+ G+ W ED E EE G AD SK
Sbjct: 125 LFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKRGFAWPEDLEMTEEGGCFPGADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S +A RG Q+GTLG+GNHY EIQ+ + IY++ A GI QV +M H GSRG
Sbjct: 185 ISHKAIDRGYNQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHCGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L M+R I NDR+LACA S+EGQDY +
Sbjct: 245 FGHQVAT--------------DYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAA 290
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A N A+ NR + R+ F+ F P DL M ++YDV+HN AK E HMVDG+++
Sbjct: 291 MKCAVNMAFANRQVILHRIREVFSDNFGRDPADLGMEMVYDVAHNTAKLETHMVDGRRRE 350
Query: 238 LLVHRK 243
LL+HRK
Sbjct: 351 LLIHRK 356
>gi|354565476|ref|ZP_08984651.1| protein of unknown function UPF0027 [Fischerella sp. JSC-11]
gi|353549435|gb|EHC18877.1| protein of unknown function UPF0027 [Fischerella sp. JSC-11]
Length = 484
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 147/246 (59%), Gaps = 17/246 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS G + ++ + + +E G W +R GY W ED E EE G + AD SK
Sbjct: 124 LYERVPAGVGSTGFVKLSRNEFCKVVEEGAQWCIRNGYGWEEDLELVEENGCIQGADASK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S +A RG Q+GTLG+GNHY EIQ+ + IYD+ A +GI QV VM H GSRG
Sbjct: 184 ISEKAIDRGFNQIGTLGSGNHYLEIQVARPENIYDQELARSLGITIPNQVVVMFHCGSRG 243
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMK-RDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L K M+ + I+ DR+LACA NS EGQ Y +
Sbjct: 244 FGHQVAT--------------DYLQTFLKVMESKYGIKILDRELACAPFNSPEGQAYFAA 289
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M N ++ NR + R+ F++ +P++L MH+IYDV+HN AK E H++D ++++
Sbjct: 290 MKCGINMSFANRQVILHQIREVFSEILGRSPENLGMHMIYDVAHNTAKLERHIIDSQERS 349
Query: 238 LLVHRK 243
LLVHRK
Sbjct: 350 LLVHRK 355
>gi|159042419|ref|YP_001541671.1| hypothetical protein Cmaq_1864 [Caldivirga maquilingensis IC-167]
gi|157921254|gb|ABW02681.1| protein of unknown function UPF0027 [Caldivirga maquilingensis
IC-167]
Length = 484
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 16/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ P GVG G + + +L + L+ G+DW++R GY W +DKE+ E+ G AD SK
Sbjct: 124 IFELAPAGVGETGKLHLPVSELNKVLDEGVDWAIRNGYGWTDDKEYIEQNGSWDFADSSK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG ++GT+G+GNH+ EIQ+VD+I++ A GIE GQV VMIHSGSRG G
Sbjct: 184 VSQRAKERGKDEIGTIGSGNHFIEIQVVDKIFNPDVAKVFGIEKEGQVLVMIHSGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + E M++ + DR+LA + ++E QDYL +MAA
Sbjct: 244 HQVAT--------------DYIKVAESKMRQWGLYLPDRELAALPLTAREAQDYLHAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AAN+AW NR + R++F + F PD L M +IYDV+HNIAK EEH+VD G + +
Sbjct: 290 AANYAWTNRHLLMHWVRESFKRVFGRDPDKLGMRIIYDVAHNIAKFEEHVVDDEGHRAKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>gi|282164698|ref|YP_003357083.1| hypothetical protein MCP_2028 [Methanocella paludicola SANAE]
gi|282157012|dbj|BAI62100.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 479
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 154/243 (63%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P G+GS+ +N L E G W++ GY D EHCEE G M ADP+K
Sbjct: 125 LYEAVPSGLGSESKFRVNDAQLAEVFRTGARWAVENGYGVKADLEHCEENGEMKGADPAK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ EIQ V++IYD+ A G+++ GQV VMIH GSRG G
Sbjct: 185 VSKKARDRGRPQLGTLGSGNHFLEIQKVEKIYDEAVAKAFGLKE-GQVTVMIHCGSRGAG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + ME+A ++ I+ DRQLACA ++S E +DY +MAA
Sbjct: 244 HQICT--------------DYVKTMEQASRKYGIKLYDRQLACAPLSSPEAKDYFAAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR ++ R+AF+K + D+ M ++YDV+HN+AK EEH VDG +K L V
Sbjct: 290 GANYAWANRQIISHWVREAFSKYYKR---DVRMDLVYDVAHNVAKFEEHEVDGVKKALCV 346
Query: 241 HRK 243
HRK
Sbjct: 347 HRK 349
>gi|359415892|ref|ZP_09208277.1| hypothetical protein HRED_01836 [Candidatus Haloredivivus sp. G17]
gi|358033742|gb|EHK02262.1| hypothetical protein HRED_01836 [Candidatus Haloredivivus sp. G17]
Length = 471
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 153/250 (61%), Gaps = 20/250 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P G+G G I ++ +DLEE LE GMDW L G+ ED EHCEE GR L +P K
Sbjct: 119 LYSKVPCGLGKGGYIDIDEQDLEEILEKGMDWMLENGHAEKEDLEHCEENGR-LPGNPEK 177
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V +AK RGL QLG+LG+GNH+ E+Q+VDE++ K A G+E+ QV VMIHSGSRG G
Sbjct: 178 VPEKAKTRGLKQLGSLGSGNHFLEVQVVDEVFSKEKAEAFGLEE-DQVLVMIHSGSRGLG 236
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC YV EKA E ++ L A I+S+E QDY ++M A
Sbjct: 237 HQ---------TCSDYVR-----DFEKAYPDIAEEIPEKNLIYAPIDSREAQDYKEAMYA 282
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR ++T R++ F D ++ ++YDV HNIAK E H ++ ++K ++V
Sbjct: 283 AANFAWCNRQAITEAVRESLETLF----DGPEVGLVYDVCHNIAKEETHEMNDEEKDVIV 338
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 339 HRKGATRAFP 348
>gi|295798137|emb|CAX68979.1| Protein of unknown function UPF0027, homolog to rtcB from E. coli
[uncultured bacterium]
Length = 484
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 149/243 (61%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++H+P GVGS G + + ++ ++ + G W++ +G ED E CEE G + ADP
Sbjct: 127 LYNHVPSGVGSTGEVRVTNQEEKKLILKGAGWAVSQGMGVEEDLEFCEESGALAEADPDN 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA KRG Q GTLG+GNH+ E+Q+VDEI D A G+ GQ+ VMIHSGSRGFG
Sbjct: 187 VSERAYKRGRNQAGTLGSGNHFLEVQVVDEILDADKAQIFGLSK-GQIAVMIHSGSRGFG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+Q+ C+ D + QM + + I DRQLACA I S E Q+YL +M
Sbjct: 246 YQI----CD----------DYVKQMITCLAKYGIFVPDRQLACAPIKSPEAQNYLGAMRC 291
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + + R+ F++ F + L M ++YDV+HNIAK E+ V+G +KTL V
Sbjct: 292 AANYAWANRQVLMYQVREVFSRFFGKSWSALGMTLVYDVAHNIAKFEQFEVNGVKKTLCV 351
Query: 241 HRK 243
HRK
Sbjct: 352 HRK 354
>gi|307353841|ref|YP_003894892.1| hypothetical protein Mpet_1701 [Methanoplanus petrolearius DSM
11571]
gi|307157074|gb|ADN36454.1| protein of unknown function UPF0027 [Methanoplanus petrolearius DSM
11571]
Length = 477
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 144/243 (59%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+ + +LE+ + G W+++EGY +D + CEE G M A
Sbjct: 122 LFSTVPTGVGNVAPKKFSDSELEDIMREGASWAVKEGYGMPDDVKSCEESGMMKEASTEH 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG PQ GTLG+GNH+ E+Q EI D AA GIE Q+C MIH GSRG G
Sbjct: 182 VSTKARQRGRPQCGTLGSGNHFLEVQYAAEIMDDEAAKAFGIEK-DQICFMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A K+ I+ DRQLACA + S EG+ Y +MAA
Sbjct: 241 HQVCT--------------DHLGTIENATKKYGIKIPDRQLACAPVKSPEGEAYFGAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T + R+ + F D +M ++YDV+HN+AK E H+VDGK+ L V
Sbjct: 287 SANYAWANRQMITHMVREVIERDFGV--DYNEMKLVYDVTHNVAKIETHVVDGKKMELCV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|91774130|ref|YP_566822.1| hypothetical protein Mbur_2207 [Methanococcoides burtonii DSM 6242]
gi|91713145|gb|ABE53072.1| UPF0027-domain protein [Methanococcoides burtonii DSM 6242]
Length = 486
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 151/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MF+ +P GVGSK + + +L++ G W++ GY D EHCE G + D
Sbjct: 129 MFEAVPSGVGSKSRLKVTDSELDDIFLHGSKWAVENGYGEKTDLEHCEGGGCIEGGDVGN 188
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S++A+KRG PQ GTLG+GNH+ E+Q VD+IYD+ AA G+E+ GQV MIH GSRG G
Sbjct: 189 ISIKARKRGRPQAGTLGSGNHFLEVQYVDKIYDQEAADAFGLEE-GQVSFMIHCGSRGTG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + M +A K+ I+ D+QLACA S+E Q+Y SM
Sbjct: 248 HQICT--------------DNIKTMSQASKKYGIQLPDKQLACAPAQSEEAQNYFGSMIC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R A F + D+L + ++YDV+HN+AK EEH VDGK+K + V
Sbjct: 294 AANYAWNNRQMITHWTRDVIADTFRSDIDELGLELVYDVAHNVAKLEEHEVDGKKKNVYV 353
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 354 HRKGATRAFP 363
>gi|289522446|ref|ZP_06439300.1| RtcB protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504282|gb|EFD25446.1| RtcB protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 475
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 156/256 (60%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGSKG + ++ +L L G W++++GY +ED E EE G + +A+P
Sbjct: 122 LFSRVPSGVGSKGALKISETELLSVLAKGALWAVKKGYGRSEDLECIEERGTLPHANPDA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG PQLGTLG+GNH+ EIQ++DEIYD+ A + G+ + GQV VMIH GSRG G
Sbjct: 182 VSKKAIERGKPQLGTLGSGNHFLEIQVIDEIYDENVARQFGL-NPGQVTVMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C+ D + M +AM + I DRQL CA + S+E + YL +M A
Sbjct: 241 HQV----CD----------DYIKVMLRAMNKYGISVPDRQLCCAPLKSEEAKQYLGAMQA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A NR + L R+ F F + D+ ++YDVSHN+A E+H V+GKQ + V
Sbjct: 287 AANYALANREIIGHLVREVFGDFFPKS----DLKLLYDVSHNMAHIEKHDVEGKQADVCV 342
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP +
Sbjct: 343 HRKGATRAFPPGHPSL 358
>gi|435850657|ref|YP_007312243.1| hypothetical protein Metho_0446 [Methanomethylovorans hollandica
DSM 15978]
gi|433661287|gb|AGB48713.1| hypothetical protein Metho_0446 [Methanomethylovorans hollandica
DSM 15978]
Length = 486
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGSK + +N L++ G W++ GY D E CE G M A +
Sbjct: 129 LFHAVPSGVGSKSRLRVNDDQLDDVFIHGSRWAVENGYGVPNDVERCESQGMMEGALVKQ 188
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA++RG PQLGTLG+GNH+ EIQ VDEIYD AA G+ + GQ+ MIH GSRG G
Sbjct: 189 VSTRARQRGRPQLGTLGSGNHFLEIQYVDEIYDTKAADAFGLHE-GQITFMIHCGSRGAG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L + +A ++ I+ D+QLACA +S E Q+Y +M
Sbjct: 248 HQICT--------------DHLRTLTQAAEKYKIDLPDKQLACAPTDSSEAQNYFGAMVC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F F D+L M ++YDV+HN+AK E H +DGK++ + V
Sbjct: 294 AANYAWTNRQVIMHWAREVFQDFFRQDMDELGMDLVYDVAHNVAKLETHKIDGKKREVYV 353
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 354 HRKGATRAFP 363
>gi|269929152|ref|YP_003321473.1| hypothetical protein Sthe_3251 [Sphaerobacter thermophilus DSM
20745]
gi|269788509|gb|ACZ40651.1| protein of unknown function UPF0027 [Sphaerobacter thermophilus DSM
20745]
Length = 487
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 146/243 (60%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P G+GS G + + ++++ L G +++ GY D + EE GRM ADP
Sbjct: 132 LFHGVPAGLGSTGELKLTEKEIDRVLREGAHYAVNLGYGTPADLTYVEEQGRMSGADPDA 191
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R L Q+GTLG+GNHY E+Q+VDEIYD+ AA G+ VGQV +M+H+GSR G
Sbjct: 192 VSRTAKQRQLRQVGTLGSGNHYVEVQVVDEIYDEEAARAFGLA-VGQVTIMLHTGSRALG 250
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +E+A ++ NI DR+L CA + S EG+ Y ++ A
Sbjct: 251 HQIGT--------------DYLPFLERAARKYNIPIRDRELVCAPVESPEGRQYYAAVMA 296
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN A+ NR +T L R+A K P+ + +Y+++HN K EEH V+G++K LLV
Sbjct: 297 GANTAFANRQVLTHLIREALNKALGVAPESI--RTVYEIAHNTVKFEEHEVNGRRKRLLV 354
Query: 241 HRK 243
HRK
Sbjct: 355 HRK 357
>gi|67470472|ref|XP_651200.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|327488451|sp|C4M244.1|RTCB1_ENTHI RecName: Full=tRNA-splicing ligase RtcB homolog 1
gi|56467905|gb|EAL45814.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449709430|gb|EMD48699.1| protein C22orf28 family protein [Entamoeba histolytica KU27]
Length = 524
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 17/240 (7%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+IP GVG+ + +++ E + G++W +++G W ED +CEE GR++N+DP VS
Sbjct: 172 NIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCEENGRIINSDPHLVSQ 231
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A+ RG QLGTLG+GNHY EIQ VDEI DK AA +MGI +GQ+C+MIH GSRG GHQV
Sbjct: 232 KARGRGRNQLGTLGSGNHYLEIQRVDEIMDKEAAKQMGISHIGQICIMIHCGSRGLGHQV 291
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C +V + + + N D QL S GQ Y K+M AAAN
Sbjct: 292 ---------CQDFV--------DMCVSQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAAN 334
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A+ NR +++ R F + F +P DLDMH++YDV HNIAK E H+VDGK+ +VHRK
Sbjct: 335 YAFANRGMISYHVRCTFEQVFQKSPKDLDMHLVYDVCHNIAKEESHLVDGKEIKCIVHRK 394
>gi|88604404|ref|YP_504582.1| hypothetical protein Mhun_3181 [Methanospirillum hungatei JF-1]
gi|88189866|gb|ABD42863.1| protein of unknown function UPF0027 [Methanospirillum hungatei
JF-1]
Length = 477
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 157/243 (64%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +PVGVG++ + ++ + LE+ + G +++ EGY ++D HCEE GRM ADP+
Sbjct: 122 LFDAVPVGVGARSSLRLSEKQLEKMMTDGARFAVAEGYGNSDDITHCEEQGRMKEADPAH 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG+PQ GTLGAGNH+ EIQ+V+EIYD+ AA G+E GQVC+M+H GSRG G
Sbjct: 182 VSRKARSRGVPQSGTLGAGNHFLEIQVVEEIYDEEAARTFGVEQ-GQVCMMVHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A+ + +I+ D+QLACA + S EG+ Y MAA
Sbjct: 241 HQVCT--------------DHLQVLEHAVSKYHIQLPDKQLACAPLTSPEGKAYFGGMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R + DD+ + +YDV+HN+AK EEH +DGK + + V
Sbjct: 287 AANYAWANRQIITHQIRSVLTRMSGIGYDDIRL--VYDVAHNVAKIEEHEIDGKTRKVCV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|434394106|ref|YP_007129053.1| protein of unknown function UPF0027 [Gloeocapsa sp. PCC 7428]
gi|428265947|gb|AFZ31893.1| protein of unknown function UPF0027 [Gloeocapsa sp. PCC 7428]
Length = 486
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 153/257 (59%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS G + ++ + + +E G W + GY W ED E EE G + AD +K
Sbjct: 126 LYERVPAGVGSTGFVKISRNEFRKVVEQGARWCVDNGYGWEEDLELMEENGCIAGADAAK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S +A RG Q+GTLG+GNHY EIQ+ + I++ A+K+GI QV VM H GSRG
Sbjct: 186 ISEKAIDRGFNQIGTLGSGNHYLEIQVAKKENIFEPELAAKLGITQPDQVVVMFHCGSRG 245
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMK-RDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L K M+ + I+ DR+LACA +S EGQ Y +
Sbjct: 246 FGHQVAT--------------DYLQVFLKVMESKYGIKILDRELACAPFDSPEGQAYFSA 291
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M N ++ NR + R+ F++ F + +DL MH++YDV+HN AK E H+VDGK+++
Sbjct: 292 MKCGLNMSFANRQVILHRIREVFSEIFGRSAEDLGMHMVYDVAHNTAKLERHIVDGKERS 351
Query: 238 LLVHRK-VSEPSHPGVS 253
LLVHRK + PG++
Sbjct: 352 LLVHRKGATRAFAPGMT 368
>gi|219851657|ref|YP_002466089.1| hypothetical protein Mpal_1018 [Methanosphaerula palustris E1-9c]
gi|219545916|gb|ACL16366.1| protein of unknown function UPF0027 [Methanosphaerula palustris
E1-9c]
Length = 477
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 150/243 (61%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+K P+++ DL L G W++ +G+ D CEE GRM A+P
Sbjct: 122 LFHAVPTGVGAKSARPVSSSDLTGILTDGAGWAVEQGFGTEHDLVRCEEQGRMKEANPDA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG+PQ GTLGAGNH+ E+Q+V EI D AA G+E GQVCVMIH GSRG G
Sbjct: 182 VSQKARQRGIPQPGTLGAGNHFLEVQVVGEIADHKAAGLFGVEQ-GQVCVMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A K+ I DRQLACA ++S EG Y +MAA
Sbjct: 241 HQVCT--------------DHLKTLEAATKKYGINLPDRQLACAPLDSPEGTAYFGAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T RQ F++ F +P+ +M ++YDV+HNIAK E H V+G + V
Sbjct: 287 AANYAWANRQMITHQVRQVFSRAFRISPE--EMPLVYDVAHNIAKFETHQVNGVATEVCV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|126179595|ref|YP_001047560.1| hypothetical protein Memar_1651 [Methanoculleus marisnigri JR1]
gi|125862389|gb|ABN57578.1| protein of unknown function UPF0027 [Methanoculleus marisnigri JR1]
Length = 478
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 146/258 (56%), Gaps = 21/258 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +P GVG+K + ++ +DL + G W++ G D CE G M ADP
Sbjct: 123 LFDAVPTGVGAKSSLRVSNKDLSAVMVDGARWAVERGLGTEADLVRCEGEGAMPGADPDA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG+PQ+GTLGAGNH+ E+Q+ EI D AA GI + GQVC M+H GSRG G
Sbjct: 183 VSAKARQRGVPQIGTLGAGNHFLEVQVAREIVDPEAAKAFGIAE-GQVCFMVHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L +E A+ + I DRQLACA I+S EG+ Y M +
Sbjct: 242 HQVAT--------------DHLRTLEGALPKYGIRLPDRQLACAPIDSPEGRAYYGGMVS 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F F D +M ++YDV+HN+AK E H VDG + V
Sbjct: 288 AANYAWTNRQVIMHEARKVFVDLFGIDYD--EMRLVYDVAHNVAKFERHDVDGVSTEVCV 345
Query: 241 HRKVSE----PSHPGVSR 254
HRK + P GV R
Sbjct: 346 HRKGATRAFGPGAEGVPR 363
>gi|89519333|gb|ABD75810.1| hypothetical protein [uncultured bacterium]
Length = 432
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 154/259 (59%), Gaps = 20/259 (7%)
Query: 1 MFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +IP GVGSK + + +D L G +W++ GY D +H EE G + ADP
Sbjct: 128 LFQNIPCGVGSKRSDLKLKGKDERNVLLKGAEWAVSHGYGTKADLDHIEENGYLRGADPD 187
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+S RA KRG PQLGTLG+GNH+ EI +DEIYD AS +G+E + V++H+GSRGF
Sbjct: 188 VISERAYKRGRPQLGTLGSGNHFVEIDYIDEIYDPAIASALGLER-DAIAVVVHTGSRGF 246
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+QV C+ ++L M +A ++ I DRQL CA INS+EGQ Y +MA
Sbjct: 247 GYQV----CD----------ESLPAMLEASRKYGICLPDRQLCCAPINSQEGQRYFSAMA 292
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAN+A+ NR +T R+ F +P DL M+++YDV+HNIAK E + + G Q+ +
Sbjct: 293 CAANYAFANRQIITHWVRKTFEDVLQVSPRDLRMNLVYDVAHNIAKFETYDIGGTQRKVC 352
Query: 240 VHRKVS----EPSHPGVSR 254
VHRK + HP V R
Sbjct: 353 VHRKGATRAFPAGHPDVPR 371
>gi|221636031|ref|YP_002523907.1| hypothetical protein trd_A0625 [Thermomicrobium roseum DSM 5159]
gi|221157713|gb|ACM06831.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
Length = 486
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 153/245 (62%), Gaps = 17/245 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MF+ IP G+GS G + ++ ++++ L G +++R GY +D E+ EE+G + +ADPS
Sbjct: 131 MFEVIPAGLGSTGELKLSTKEIDRVLREGARYAVRLGYGREDDLEYIEEHGCLSDADPSV 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R + Q+GTLG+GNHY E+Q+VD+IY+ AA G+E +GQ+ +M+H+GSR G
Sbjct: 191 VSHTAKQRQMAQVGTLGSGNHYVEVQVVDQIYNARAAEAFGLE-LGQIVIMLHTGSRALG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +EKA ++ IE DR+L CA I S EGQ Y +++ A
Sbjct: 250 HQIGT--------------DYLPFLEKATRKYGIEVPDRELVCAPIESPEGQQYFRAVMA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN A+ NR + L RQAF K D + +Y+V+HN K E H V+G+++ LLV
Sbjct: 296 GANCAFANRQVLAHLVRQAFWKALRVP--DTAIETLYEVAHNTVKWEVHEVNGERRRLLV 353
Query: 241 HRKVS 245
HRK S
Sbjct: 354 HRKGS 358
>gi|407042416|gb|EKE41311.1| RtcB domain containing protein [Entamoeba nuttalli P19]
Length = 524
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 148/240 (61%), Gaps = 17/240 (7%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+IP GVG+ + +++ E + G++W +++G W ED +CEE GR++N+DP VS
Sbjct: 172 NIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCEENGRIINSDPRLVSQ 231
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A+ RG QLGTLG+GNHY EIQ VDEI DK AA +MGI +GQ+C+MIH GSRG GHQV
Sbjct: 232 KARGRGRNQLGTLGSGNHYLEIQRVDEIMDKEAAKQMGISHIGQICIMIHCGSRGLGHQV 291
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C +V + + + N D QL S GQ Y K+M AAAN
Sbjct: 292 ---------CQDFV--------DMCVSQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAAN 334
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A+ NR +++ R F + F P DLDMH++YDV HNIAK E H++DGK+ ++HRK
Sbjct: 335 YAFANRGMISYHVRCTFEQVFQKAPKDLDMHLVYDVCHNIAKEESHLIDGKEIKCIIHRK 394
>gi|374849583|dbj|BAL52595.1| hypothetical conserved protein [uncultured prokaryote]
Length = 486
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 153/245 (62%), Gaps = 17/245 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ IP G+GS G + ++ ++++ L G +++R GY ED E+ EE+G + +ADPS
Sbjct: 131 LYEVIPAGLGSTGELKLSTKEIDRVLREGARYAVRLGYGREEDLEYIEEHGCLSDADPSV 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R + Q+GTLG+GNHY E+Q+VD+IY+ AA G+E VGQ+ +M+H+GSR G
Sbjct: 191 VSHTAKQRQMAQVGTLGSGNHYVEVQVVDQIYNARAAEAFGLE-VGQIVIMLHTGSRALG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +EKA K+ IE DR+L CA I S EGQ Y +++ A
Sbjct: 250 HQIGT--------------DYLPFLEKATKKYGIEVPDRELVCAPIESPEGQQYFRAVMA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN A+ NR + L R+AF K D + +Y+V+HN K E H V+G+++ LLV
Sbjct: 296 GANCAFANRQVLAHLVREAFWKALRVP--DTAIETLYEVAHNTVKWEVHEVNGERRRLLV 353
Query: 241 HRKVS 245
HRK S
Sbjct: 354 HRKGS 358
>gi|428212870|ref|YP_007086014.1| hypothetical protein Oscil6304_2475 [Oscillatoria acuminata PCC
6304]
gi|428001251|gb|AFY82094.1| hypothetical protein Oscil6304_2475 [Oscillatoria acuminata PCC
6304]
Length = 483
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 144/248 (58%), Gaps = 17/248 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGSKG + ++ + + ++ G W + +GY W ED E EE G + A SK
Sbjct: 123 LYERVPAGVGSKGFVKVSRNEFRQVVQEGAKWCINQGYGWEEDLELTEENGCIAGAYASK 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S +A RG Q+GTLG+GNHY EIQ+ + I +K A GI QV VM H GSRG
Sbjct: 183 ISDKAIDRGCNQIGTLGSGNHYLEIQVARPENIVNKELAEAFGITIPNQVVVMFHCGSRG 242
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMK-RDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L K M+ + I DR+LACA NS EGQDY +
Sbjct: 243 FGHQVAT--------------DYLQVFLKVMESKYGINILDRELACAPFNSPEGQDYFAA 288
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M N ++ NR + R+ F+ F + + L MH +YDVSHN AK EEH+VDGK K+
Sbjct: 289 MKCGLNMSFANRQVILHRIREVFSDVFGKSAEALGMHQVYDVSHNTAKLEEHIVDGKAKS 348
Query: 238 LLVHRKVS 245
LLVHRK S
Sbjct: 349 LLVHRKGS 356
>gi|116754671|ref|YP_843789.1| hypothetical protein Mthe_1374 [Methanosaeta thermophila PT]
gi|116666122|gb|ABK15149.1| protein of unknown function UPF0027 [Methanosaeta thermophila PT]
Length = 473
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 154/243 (63%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG+ + ++ +L EA G W++ EGY D EHCEE G + ADPS+
Sbjct: 120 LFKEIPSGVGATSRLHVSDSELTEAFIAGARWAVEEGYGTEGDLEHCEENGCLKGADPSQ 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KRG PQ GTLG+GNH+ E+Q V E+YD+ A + G+ GQV VMIH GSRG G
Sbjct: 180 VSTKARKRGRPQFGTLGSGNHFLEVQYVGEVYDERIARRFGLFK-GQVTVMIHCGSRGAG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L + KA+++ NI+ D+QLACA I + E +Y +MAA
Sbjct: 239 HQICT--------------DHLEVLAKAVRKYNIDLPDKQLACAPIGTPEATNYFGAMAA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ FAK F D++M ++YDV+HN+AK EEHMVDG+ + L V
Sbjct: 285 AANYAWANRQIIAHWTREVFAKYFG----DVEMPLVYDVAHNVAKIEEHMVDGRLERLYV 340
Query: 241 HRK 243
HRK
Sbjct: 341 HRK 343
>gi|406663960|ref|ZP_11071963.1| RNA-splicing ligase RtcB [Cecembia lonarensis LW9]
gi|405551740|gb|EKB47398.1| RNA-splicing ligase RtcB [Cecembia lonarensis LW9]
Length = 481
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 164/257 (63%), Gaps = 21/257 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVG G I ++ ++L+E L G+ W+L +GY ED E G++ N+DP
Sbjct: 126 LYAQVPSGVGKGGNILLSEKELDEVLRRGVQWALEKGYAVPEDIAKIESQGQLDNSDPQF 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG+ QLGT+G+GNH+ E+ +DEIYD+ A+ G++ +G++ V+IH+GSRG G
Sbjct: 186 VSEYAKRRGIDQLGTIGSGNHFVEVSYIDEIYDEEIAATFGLK-LGRLTVLIHTGSRGLG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D + M +M + I DR+LAC NS+EGQ+Y K+MAA
Sbjct: 245 HQVAS--------------DYMKVMVASMGKYGISVPDRELACVPFNSQEGQEYFKAMAA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T+ R A+ + F LD+ +YDV+HNIAK E+H+V+G++K L+V
Sbjct: 291 AANYAWCNRQVITWEIRNAWEEFFKGKNTQLDL--VYDVAHNIAKVEDHVVNGEKKKLIV 348
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP V+
Sbjct: 349 HRKGSTRSFGPGHPEVT 365
>gi|392407730|ref|YP_006444338.1| hypothetical protein Anamo_1406 [Anaerobaculum mobile DSM 13181]
gi|390620866|gb|AFM22013.1| hypothetical protein Anamo_1406 [Anaerobaculum mobile DSM 13181]
Length = 475
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGSKG I + DL + L G W++++GY ED E EE GR+ +A+ S
Sbjct: 122 IFTKVPCGVGSKGAIKIGESDLLDVLANGALWAVKKGYGTKEDLECIEESGRLPHANASY 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG PQLGTLG+GNH+ EIQ++DEIYD+ A + G+ ++GQV VMIH GSRG G
Sbjct: 182 VSKKALERGKPQLGTLGSGNHFLEIQVIDEIYDENVARRFGL-NLGQVTVMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C+ D + M +AM + I+ DRQL CA + S+E ++YL +M A
Sbjct: 241 HQV----CD----------DYIKVMLRAMTKYGIKVPDRQLCCAPLKSQEAREYLGAMQA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A NR + + R F + F ++ ++YDVSHN+A E+H +DG + V
Sbjct: 287 AANYALANREIIGHMVRDVFLRFFPKA----ELKLLYDVSHNMAHIEKHELDGVIMDVCV 342
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 343 HRKGATRAFPPDHPSL 358
>gi|345302381|ref|YP_004824283.1| hypothetical protein Rhom172_0502 [Rhodothermus marinus
SG0.5JP17-172]
gi|345111614|gb|AEN72446.1| protein of unknown function UPF0027 [Rhodothermus marinus
SG0.5JP17-172]
Length = 988
Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats.
Identities = 104/250 (41%), Positives = 152/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+ G + ++ ++L G W++R G+ D E EE GR+ ADP+
Sbjct: 631 LFRRVPTGVGASGALRVSKQELRRVAVEGAHWAVRHGFGSEVDLEFIEENGRIEGADPAA 690
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA +RG QLGTLG+GNH+ E+ V +I+D AA MG+ GQV V+IH+GSRGFG
Sbjct: 691 VSERAYERGADQLGTLGSGNHFLEVGYVAQIFDDEAARVMGLFP-GQVTVIIHTGSRGFG 749
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+Q+ C+ D L M++A+ R +I DRQLACA + S EGQ YL +M
Sbjct: 750 YQI----CD----------DYLAVMDRALARYHIRLPDRQLACAPLRSPEGQQYLAAMRC 795
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
NFA+ NR + R+AFA+ +D+ + +Y+V+HNIAK EEH +DG+++ + V
Sbjct: 796 GINFAFANRQIIAHNTRKAFAEALGMREEDIGLRTVYEVAHNIAKIEEHTIDGERRRVCV 855
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 856 HRKGATRAFP 865
>gi|268316075|ref|YP_003289794.1| hypothetical protein Rmar_0504 [Rhodothermus marinus DSM 4252]
gi|262333609|gb|ACY47406.1| protein of unknown function UPF0027 [Rhodothermus marinus DSM 4252]
Length = 988
Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats.
Identities = 104/250 (41%), Positives = 152/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+ G + ++ ++L G W++R G+ D E EE GR+ ADP+
Sbjct: 631 LFRRVPTGVGASGALRVSKQELRRVAVEGAHWAVRHGFGSEVDLEFIEENGRIEGADPAA 690
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA +RG QLGTLG+GNH+ E+ V +I+D AA MG+ GQV V+IH+GSRGFG
Sbjct: 691 VSERAYERGADQLGTLGSGNHFLEVGYVAQIFDDEAARVMGLFP-GQVTVIIHTGSRGFG 749
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+Q+ C+ D L M++A+ R +I DRQLACA + S EGQ YL +M
Sbjct: 750 YQI----CD----------DYLAVMDRALARYHIRLPDRQLACAPLRSPEGQQYLAAMRC 795
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
NFA+ NR + R+AFA+ +D+ + +Y+V+HNIAK EEH +DG+++ + V
Sbjct: 796 GINFAFANRQIIAHNTRKAFAEALGMREEDIGLRTVYEVAHNIAKIEEHTIDGERRRVCV 855
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 856 HRKGATRAFP 865
>gi|85857851|ref|YP_460053.1| RTCB protein [Syntrophus aciditrophicus SB]
gi|85720942|gb|ABC75885.1| RTCB protein [Syntrophus aciditrophicus SB]
Length = 482
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 153/256 (59%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP GVGS G++ + ++ + L G W++ +GY ED E E+YG M ADP K
Sbjct: 125 LFQNIPTGVGSTGVLKLAQKEERQVLTQGSRWAVSQGYGTDEDVETTEDYGVMTGADPDK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA +RG QLGTLG+GNH+ EI++V+EI+D A+ G+ VGQV V+IHSGSRG G
Sbjct: 185 VSPRAMERGRDQLGTLGSGNHFLEIEVVEEIFDPDVAAVFGLS-VGQVAVLIHSGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+Q+ C+ D L +M K M + DRQLAC+ + S G+DYL +MA
Sbjct: 244 YQI----CD----------DYLARMVKKMGELGFDLPDRQLACSWLESTAGKDYLAAMAC 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F K P +L M ++YDV HNIAK E VDG+ L V
Sbjct: 290 AANYAWANRQMLMHWTRETFEKTLQKAPRELGMKLLYDVCHNIAKLETFPVDGEMMKLCV 349
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP +
Sbjct: 350 HRKGATRSFPPGHPAL 365
>gi|289547934|ref|YP_003472922.1| hypothetical protein Thal_0159 [Thermocrinis albus DSM 14484]
gi|289181551|gb|ADC88795.1| protein of unknown function UPF0027 [Thermocrinis albus DSM 14484]
Length = 480
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 151/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ ++P GVGS G + ++ ++L E L G W++ G+ + ED +H E G + ADPSK
Sbjct: 125 ILRNVPAGVGSTGKLKLSKKELAEVLVKGARWAVERGFGFEEDLQHIESEGALPGADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGT+G+GNH+ EIQ+VDEIYD+ + +G+ + GQV +M+HSGSRG G
Sbjct: 185 VSNTAYERGSGELGTVGSGNHFVEIQVVDEIYDEEISETLGLYE-GQVTIMVHSGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C+ D L + ++ + I D QLAC +S EGQ Y +M A
Sbjct: 244 HQV---------CV-----DYLKVAKDSLAKYGISLPDMQLACMPFSSPEGQSYFGAMKA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + +L + F + +DL +IYD++HNI K E+H V+GK L+V
Sbjct: 290 AANYAFANRQILGYLTADTVRRFFGLSWEDLGYRLIYDLAHNIGKVEKHRVNGKVMELVV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|294102530|ref|YP_003554388.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293617510|gb|ADE57664.1| protein of unknown function UPF0027 [Aminobacterium colombiense DSM
12261]
Length = 464
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 150/243 (61%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS I ++ +DL++ L G W+++EG +D + EE G + A
Sbjct: 124 LFSAVPSGVGSSSAIRLSLKDLDDVLRKGARWAVKEGMGMQDDLDRTEEGGCLDGALCEF 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG QLGTLG+GNH+ EIQ+VDEI+DK AAS+M +E G + VMIH GSRG G
Sbjct: 184 VSSRAKERGKNQLGTLGSGNHFLEIQVVDEIFDKAAASQMNLES-GSITVMIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C+ D L M +AM + I+ DRQL CA I S+EGQ Y+ SM A
Sbjct: 243 HQV----CD----------DYLKVMRRAMAKYKIDVPDRQLCCAPIQSEEGQQYIGSMKA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA NR + + R FA+ F P + +YDVSHN+A E+H+ +G+++ + V
Sbjct: 289 AANFAMANRQIIGSVVRDVFAQFFPGKP----LFPVYDVSHNMAHIEKHIWEGRKREVCV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|124484957|ref|YP_001029573.1| hypothetical protein Mlab_0129 [Methanocorpusculum labreanum Z]
gi|124362498|gb|ABN06306.1| protein of unknown function UPF0027 [Methanocorpusculum labreanum
Z]
Length = 477
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 152/243 (62%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P GVGSK I ++ DL LE G ++ GY D CEE G M A P
Sbjct: 122 LFNAVPTGVGSKSPIRLSQNDLSSMLEYGAKNAVEMGYGMEGDIPRCEENGAMEGAKPEH 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++RG+PQ GTLG+GNH+ E+Q+VD++ D A G+ GQ+CVMIH GSRG G
Sbjct: 182 VSKKARQRGIPQCGTLGSGNHFLEVQVVDDVVDNETAKTFGVAK-GQICVMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A K+ I+ DRQLACA ++S EG+ Y +MAA
Sbjct: 241 HQVCT--------------DHLQVLESAAKKYGIDLPDRQLACAPLSSPEGEAYFGAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR +T + R+ F K+F+ + + +M ++YDV+HN+AK EEH VDG ++ + V
Sbjct: 287 SANYAWANRQIITHIVRELFVKKFHVSYE--EMPLVYDVAHNVAKWEEHNVDGVRRNVCV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|118580558|ref|YP_901808.1| hypothetical protein Ppro_2142 [Pelobacter propionicus DSM 2379]
gi|118503268|gb|ABK99750.1| protein of unknown function UPF0027 [Pelobacter propionicus DSM
2379]
Length = 485
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 138/246 (56%), Gaps = 17/246 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G I + + + L G W L+ G+ W ED E EE G ADP
Sbjct: 125 LFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKNGFAWPEDLELTEEGGCFEGADPGA 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
S +A +RG Q+GTLG+GNHY EIQ+V + ++D A+ G+ QV + HSGSRG
Sbjct: 185 CSDKAVERGYDQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHSGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L + M I TNDR+LACA S +GQ Y +
Sbjct: 245 FGHQVAT--------------DYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAA 290
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A N + NR + R+ F++ FN +P DL M ++YDV+HN AK E H +DG+++
Sbjct: 291 MKCAVNMGFANRQMILHRIREVFSRVFNRSPQDLGMGMVYDVAHNTAKLETHEIDGEKRE 350
Query: 238 LLVHRK 243
+LVHRK
Sbjct: 351 VLVHRK 356
>gi|320160545|ref|YP_004173769.1| hypothetical protein ANT_11350 [Anaerolinea thermophila UNI-1]
gi|319994398|dbj|BAJ63169.1| hypothetical protein ANT_11350 [Anaerolinea thermophila UNI-1]
Length = 483
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 151/240 (62%), Gaps = 15/240 (6%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
H P GVG+ G I ++ ++L++A +G W+L++G +D E EE G + A P KVS
Sbjct: 129 HCPSGVGTHGAIRLSDKELDQACRLGSRWALKQGMASEQDLEFTEENGCIEGAAPEKVSA 188
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RAK+RG QLGTLGAGNH+ E+++VD+I+D AA+ MG+ + G + + IH GSRGFGHQ+
Sbjct: 189 RAKERGREQLGTLGAGNHFLEVEVVDQIFDAEAANAMGLFE-GCLVLSIHCGSRGFGHQI 247
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
+ D + + + A++R I+ DR+L CA ++S EGQ YL +M AAAN
Sbjct: 248 CS--------------DYVQEFQGAVRRYGIQLPDRELVCAPLDSPEGQAYLGAMRAAAN 293
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A++NR + RQAF + + + + +YD++HNI K E H VDGKQ + VHRK
Sbjct: 294 YAFLNRQILAHHARQAFEEVLSGKVKNWHLRQVYDIAHNIGKIETHEVDGKQVKVCVHRK 353
>gi|395645740|ref|ZP_10433600.1| protein of unknown function UPF0027 [Methanofollis liminatans DSM
4140]
gi|395442480|gb|EJG07237.1| protein of unknown function UPF0027 [Methanofollis liminatans DSM
4140]
Length = 477
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 150/243 (61%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG++ + ++ DLEE + G++W++ GY D HCEE G+M NA+ +
Sbjct: 122 LFTTVPTGVGAESEMRISPHDLEEIMVEGVNWAVAAGYGTENDAAHCEEGGKMPNANAAP 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG+PQ GTLG+GNH+ EIQ VD ++D AA G+ GQ+C M+H GSRG G
Sbjct: 182 VSKKACQRGMPQAGTLGSGNHFLEIQAVDAVFDNEAAQTFGL-SAGQICFMVHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +E A +R IE DRQLACA ++S EG+ Y +MAA
Sbjct: 241 HQICT--------------DHLRTLESATRRYGIEIPDRQLACAPVHSPEGEAYFGAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNR +T R + + D +M ++YDV+HN+AK E H D ++TL V
Sbjct: 287 AANYAWVNRQVITHQVRTVLNRMYGI--DYEEMPLVYDVAHNVAKMERHNTDKGRQTLCV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|255513775|gb|EET90040.1| protein of unknown function UPF0027 [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 481
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 154/258 (59%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSK + DLE+ G+ + + +G+ + +D E EE G M+ A+P K
Sbjct: 124 LFANVPSGVGSKIKLGFTKGDLEKVAVEGVGYIIGKGFGFPDDAERIEENGCMMGANPDK 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG+ QLGTLGAGNH+ E+Q VD I D+ A G++ +V +M+HSGSRG+G
Sbjct: 184 VSKLAKDRGVQQLGTLGAGNHFLEVQKVDRILDEKTAKAFGLQK-DEVVIMVHSGSRGYG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L + + +NI D +L+ A I SKE DYL +M
Sbjct: 243 HQVCS--------------DYLRTLNDYLLANNITLVDPELSYAYIGSKEANDYLDAMKC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFA+ NR MT R++F + F+ + D L M ++YDV+HNIAK EEH VDGK+ L V
Sbjct: 289 AVNFAFTNRQIMTASIRKSFEEVFSKSADMLGMEIVYDVAHNIAKLEEHEVDGKRMKLYV 348
Query: 241 HRKVSE----PSHPGVSR 254
HRK + P +P V++
Sbjct: 349 HRKGATRAFGPGNPEVTK 366
>gi|121999133|ref|YP_001003920.1| hypothetical protein Hhal_2355 [Halorhodospira halophila SL1]
gi|121590538|gb|ABM63118.1| protein of unknown function UPF0027 [Halorhodospira halophila SL1]
Length = 486
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 153/255 (60%), Gaps = 23/255 (9%)
Query: 1 MFDHIPVGVG-SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F+ IP G+G G + RD+ L G W++ G ED E+ G + ADP
Sbjct: 131 LFERIPAGMGRGYGDTLLRNRDMRRLLREGAAWAVEVGLGEPEDLARIEDRGCLPGADPE 190
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RG Q+GT+G+GNH+ EI VD++YD+ AA ++G+E G + VMIHSGSRG
Sbjct: 191 AVSDRAIQRGRDQVGTVGSGNHFIEIGCVDDVYDEAAARRLGLE-AGTLTVMIHSGSRGL 249
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C+ D LV ME+ R+ IE DRQLACA ++ +DYL +M
Sbjct: 250 GHQV----CD----------DFLVTMERITGRNGIELPDRQLACAPLSCSAARDYLGAMQ 295
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+VNR +MT R+ FA+ ++ + ++YDVSHNIAK E H VDG+++ +
Sbjct: 296 AAANFAYVNRQAMTQQVRRVFAEVLG---EEAHLELVYDVSHNIAKFERHRVDGEEREVC 352
Query: 240 VHRKVS----EPSHP 250
VHRK + P HP
Sbjct: 353 VHRKGATRAFPPGHP 367
>gi|148263461|ref|YP_001230167.1| hypothetical protein Gura_1393 [Geobacter uraniireducens Rf4]
gi|146396961|gb|ABQ25594.1| protein of unknown function UPF0027 [Geobacter uraniireducens Rf4]
Length = 485
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 141/248 (56%), Gaps = 17/248 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G + + + +E G W L+ GY W ED E EE G AD SK
Sbjct: 125 LFYRIPTGVGCTGFVRCSQDEFRNVVEQGSRWCLKHGYAWPEDLEMTEEGGCFPGADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS +A +RG Q+GTLG+GNHY EIQ+ + IYD+ A G QV +M H GSRG
Sbjct: 185 VSHKAIERGYDQVGTLGSGNHYCEIQVARPENIYDEETARAFGFTIPNQVAIMFHCGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L M+R I+ DR+L+CA +S EGQDY +
Sbjct: 245 FGHQVAT--------------DYLQIFLGVMERKYGIKVLDRELSCAPFHSPEGQDYFAA 290
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A N A+ NR + R+ F+ F+ P++L M ++YDV+HN AK E+H V GK++
Sbjct: 291 MKCAVNMAFANRQVILHRIREVFSAVFHKDPEELGMRMVYDVAHNTAKLEKHTVAGKKRE 350
Query: 238 LLVHRKVS 245
+L+HRK S
Sbjct: 351 VLIHRKGS 358
>gi|386001290|ref|YP_005919589.1| hypothetical protein Mhar_0588 [Methanosaeta harundinacea 6Ac]
gi|357209346|gb|AET63966.1| hypothetical protein Mhar_0588 [Methanosaeta harundinacea 6Ac]
Length = 473
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 155/243 (63%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG+KG + ++ +L+EA G W++ G+ ED EHCEE GRM A P +
Sbjct: 120 LFHDVPSGVGAKGRLRVSEHELDEAFTRGAAWAVEAGFGVPEDLEHCEEGGRMEGAKPDQ 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS++A+KRG PQLGTLG+GNH+ EIQ VDEI+D A + G+ GQ+ VMIH GSRG G
Sbjct: 180 VSLKARKRGRPQLGTLGSGNHFLEIQRVDEIFDDDLAKRFGLFR-GQITVMIHCGSRGAG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L + +A+K+ IE D+QLACA + + E ++Y +MAA
Sbjct: 239 HQICT--------------DHLQVLSRAVKKYGIELPDKQLACAPLGTPEAENYFGAMAA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR ++ R+ F + F D + ++YDV+HN+AK EEH VDG ++ L V
Sbjct: 285 AANYAWANRQIISAWTREVFERYF----PDARLDLVYDVAHNVAKVEEHEVDGSRERLYV 340
Query: 241 HRK 243
HRK
Sbjct: 341 HRK 343
>gi|374855243|dbj|BAL58105.1| hypothetical conserved protein [uncultured prokaryote]
Length = 476
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 145/254 (57%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG +G + + R+L+E L G W+L G+ ED + EE G M A P
Sbjct: 123 LFQYVPAGVGEEGNLKLTPRELDEVLAGGARWALEHGFGVPEDLAYVEERGCMAGAVPEN 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q V+ IY + AA G+ + GQV V IH GSRG G
Sbjct: 183 VSETAKKRQRGEMGTLGSGNHYCEVQYVERIYRRDAAEAFGLRE-GQVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D LV + KA R I DR+LACA I+S EG+ Y+ +M A
Sbjct: 242 HQIGT--------------DYLVLLAKAASRLGIRLPDRELACAPIDSPEGKQYIGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L RQAFA+ F + +YDVSHN K E+H+VDG+ + L +
Sbjct: 288 GINCALANRQIITHLVRQAFAQLFPQA----KLETLYDVSHNTCKLEQHVVDGQTRWLWI 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRSFGPGHP 357
>gi|167042796|gb|ABZ07514.1| putative uncharacterized protein family UPF0027, partial
[uncultured marine microorganism HF4000_ANIW137I15]
Length = 415
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + + D L G W++ G+ + D + E G + A P +
Sbjct: 125 LFQQVPSGVGSRGDLRLADGDKAPLLTQGARWAVGRGFGSSSDLPNVESGGALAGAAPDE 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG Q+GTLG+GNH+ EIQ+V EI+D A G+ G + VMIH+GSRG G
Sbjct: 185 VSDKAFERGRRQIGTLGSGNHFVEIQVVREIFDSRIADAFGLFP-GGITVMIHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L MEKAM R I DRQLACA ++S EG+ YL +M A
Sbjct: 244 HQVCT--------------DFLGVMEKAMVRYGIRLPDRQLACAPLDSPEGRAYLGAMQA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + + F + +P +L M +YDV+HNI K E+H V+GK++ + V
Sbjct: 290 AANFAWANRQCICGKVEEVFLRVLGISPRELGMATLYDVAHNIVKLEDHAVNGKKQKVAV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|452961400|gb|EME66702.1| hypothetical protein G352_03846 [Rhodococcus ruber BKS 20-38]
Length = 498
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 150/253 (59%), Gaps = 25/253 (9%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+P G+ ++G+ + R L E LE G +++++G+ D E CE+ G + ADP+ VS
Sbjct: 151 VPRGMQTRGVWELPNRTVLHEVLEGGARFAVQQGHGVVRDLERCEDRGVLDGADPAAVSD 210
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL QLG+LG+GNH+ E+Q V+ I+D A MG+ DVG VCVMIH GSRG GHQ+
Sbjct: 211 RAVERGLGQLGSLGSGNHFLEVQAVERIFDPDTARPMGL-DVGTVCVMIHCGSRGLGHQI 269
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + +M KAM R I DRQLAC + S EG+ YL +M AAAN
Sbjct: 270 CT--------------DHVREMGKAMGRYGIHVPDRQLACVPVRSPEGEAYLGAMVAAAN 315
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ F TT D ++YD+SHN+AK E H VDG+ +TL VHRK
Sbjct: 316 YGRANRQLLTEAARRVFEDTAGTTLD-----LLYDISHNLAKLERHEVDGRLRTLCVHRK 370
Query: 244 VS----EPSHPGV 252
+ P HP V
Sbjct: 371 GATRSLPPRHPDV 383
>gi|21673436|ref|NP_661501.1| hypothetical protein CT0601 [Chlorobium tepidum TLS]
gi|21646538|gb|AAM71843.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 465
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 145/243 (59%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVG I +++ LE+ L G + GY ED H E G + ADPSK
Sbjct: 125 IYRQVPSGVGHGNRITFSSKQLEQILRDGAPRMVAFGYGEPEDLGHIESGGVIDVADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLG GNH+ EI +D I+D+ AA +MG+ + GQ+ + +H+GSRG G
Sbjct: 185 VSQYAKQRGGDQLGTLGTGNHFVEIDRIDAIFDQEAAVRMGLFE-GQIVIQLHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M +AM + IE DR+LACA S EGQ+Y +M+A
Sbjct: 244 HQIAT--------------DYIRVMNRAMPKYGIEVPDRELACAPFCSPEGQEYFSAMSA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFAW NR +T+ RQA+ P + V+YDV+HNIAK E H +DG ++ LLV
Sbjct: 290 GANFAWANRQLITWEIRQAWRAVVGDDP----LRVVYDVAHNIAKVETHEIDGHRRQLLV 345
Query: 241 HRK 243
HRK
Sbjct: 346 HRK 348
>gi|53802637|ref|YP_112731.1| hypothetical protein MCA0195 [Methylococcus capsulatus str. Bath]
gi|53756398|gb|AAU90689.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 476
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 149/254 (58%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IPVG+GS G I ++A+ L+ L+ G W++ +G+ A D EE+GRM A P
Sbjct: 123 LYADIPVGLGSHGKIRLDAQGLDAMLKGGAQWAVEQGWGEARDLTRIEEHGRMEGARPEN 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+R ++GTLG+GNHY E+Q V EI+D +A GI + G V V IH GSRG G
Sbjct: 183 VSARAKERQRAEMGTLGSGNHYLEVQEVTEIFDAGSAQTFGISE-GDVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M+ A K+ I DR+LACA I S+ GQDYL +M A
Sbjct: 242 HQIGT--------------EYLRLMQGAAKQHGIALPDRELACAPIESEVGQDYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L RQ FA+ + ++YDVSHN K EEH+V+GK++ L V
Sbjct: 288 AINCALANRQILTHLTRQVFARVLPAA----RLELLYDVSHNTCKFEEHLVEGKRRRLHV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAYGPGHP 357
>gi|407276691|ref|ZP_11105161.1| hypothetical protein RhP14_09307 [Rhodococcus sp. P14]
Length = 473
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 150/256 (58%), Gaps = 25/256 (9%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+P G+ ++G+ + R L LE G +++ +G+ D E CE+ G + AD + VS
Sbjct: 126 VPRGMQTRGVWELPNRSVLHRVLEGGARFAVDQGHGVVRDLERCEDRGVLAGADSAAVSD 185
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL QLG+LG+GNH+ E+Q V++++D A MG+ DVG VCVMIH GSRG GHQ+
Sbjct: 186 RAVERGLGQLGSLGSGNHFLEVQAVEQVFDPAVARPMGL-DVGTVCVMIHCGSRGLGHQI 244
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + +MEKAM R I DRQLAC + S EG+ YL +M AAAN
Sbjct: 245 CT--------------DHVREMEKAMGRYEIHVPDRQLACVPVRSPEGEAYLGAMVAAAN 290
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ F TT D ++YDVSHN+AK E H VDG+ +TL VHRK
Sbjct: 291 YGRANRQLLTEATRRVFEDTAGTTLD-----LLYDVSHNLAKIERHEVDGQVRTLCVHRK 345
Query: 244 VS----EPSHPGVSRN 255
+ P HP V +
Sbjct: 346 GATRSLPPRHPDVPED 361
>gi|336252162|ref|YP_004595269.1| hypothetical protein Halxa_0751 [Halopiger xanaduensis SH-6]
gi|335336151|gb|AEH35390.1| protein of unknown function UPF0027 [Halopiger xanaduensis SH-6]
Length = 488
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G GI+ +EE LE G+DW+L G+ ED HCE+ G AD K
Sbjct: 130 LFANIPSGLGGGGIVEAGVDTVEEILERGVDWALENGHAVEEDLLHCEDEGMRAGADADK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDDVGEAFGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + +++DMH++YDV+HNIAK E H VDG+++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVDGEERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|222055414|ref|YP_002537776.1| hypothetical protein Geob_2321 [Geobacter daltonii FRC-32]
gi|221564703|gb|ACM20675.1| protein of unknown function UPF0027 [Geobacter daltonii FRC-32]
Length = 485
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 144/248 (58%), Gaps = 17/248 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + + + + LE G W L+ GY W D E EE G AD SK
Sbjct: 125 LFYRVPSGVGCTGFVKCSQTEFRDILEQGSRWCLKNGYAWPLDLEMTEEEGCFPGADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS +A +RG Q+GTLG+GNHY EIQ+ + I D+ A G+ Q+ +M H GSRG
Sbjct: 185 VSHKAIERGYDQVGTLGSGNHYCEIQVAKPENIIDESLARAFGLTMPNQIAIMFHCGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L M+R ++ DR+L+CA S EGQDY +
Sbjct: 245 FGHQVAT--------------DYLQLFLSVMERKYGLKKLDRELSCAPFQSPEGQDYFAA 290
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A N A+ NR + R+ F+ F+ +P+DL M+++YDV+HN AK E+H+++GK++
Sbjct: 291 MKCAVNMAFANRQVILHRIREVFSSIFHKSPEDLGMNMVYDVAHNTAKIEKHVINGKKRD 350
Query: 238 LLVHRKVS 245
+L+HRK S
Sbjct: 351 VLIHRKGS 358
>gi|403253699|ref|ZP_10920000.1| hypothetical protein EMP_08007 [Thermotoga sp. EMP]
gi|402811233|gb|EJX25721.1| hypothetical protein EMP_08007 [Thermotoga sp. EMP]
Length = 474
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 146/243 (60%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS G I + + L + L G +W+++ GY ED E E+ G++ ADPS
Sbjct: 120 IYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAIKSGYGLEEDLERIEDGGKIHPADPSY 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGTLGAGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFG
Sbjct: 180 VSEEAFERGSDELGTLGAGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +K N D+QL A GQ Y +M
Sbjct: 239 HQVAT--------------DYIRLMRDKLKEHNKNLPDKQLINAPFEHPLGQAYYSAMNC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + L R+AF K F D + +IYDV+HNIAK EE+ VDGK++ L+V
Sbjct: 285 AANYAFANREILGHLVRRAFWKVFGR---DTRVDLIYDVAHNIAKVEEYEVDGKRRKLVV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|220935119|ref|YP_002514018.1| hypothetical protein Tgr7_1950 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996429|gb|ACL73031.1| protein of unknown function UPF0027 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 476
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 143/254 (56%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+GS G I + + E L G W++++GY A D E EE+GRM ADP
Sbjct: 123 LFESIPAGLGSTGYIHLRDHQMTEMLAGGAVWAVQQGYGEAADLERIEEHGRMAGADPHA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KR ++GTLG+GNHY E+Q V EIYD A G+ VGQV V IH GSRG G
Sbjct: 183 VSEQARKRQRNEMGTLGSGNHYLEVQHVTEIYDPAVAKVFGLA-VGQVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A R IE DR+LACA I S+ G+ YL +M +
Sbjct: 242 HQIGT--------------EFLREMAVAANRHGIELPDRELACAPIRSELGERYLGAMRS 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ FAK DL +YDVSHN K E H +DG + L V
Sbjct: 288 AINCALANRQILTHLTRRVFAKVLPEARLDL----LYDVSHNTCKVETHSIDGSPRQLYV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAFGPGHP 357
>gi|281412863|ref|YP_003346942.1| hypothetical protein Tnap_1446 [Thermotoga naphthophila RKU-10]
gi|281373966|gb|ADA67528.1| protein of unknown function UPF0027 [Thermotoga naphthophila
RKU-10]
Length = 474
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 146/243 (60%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS G I + + L + L G +W+++ GY ED E E+ G++ ADPS
Sbjct: 120 IYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIEDGGKIHPADPSY 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGTLGAGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFG
Sbjct: 180 VSEEAFERGSDELGTLGAGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +K N D+QL A GQ Y +M
Sbjct: 239 HQVAT--------------DYIRLMRDNLKEHNKNLPDKQLINAPFEHPLGQAYYSAMNC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + L R+AF K F D + +IYDV+HNIAK EE+ VDGK++ L+V
Sbjct: 285 AANYAFANREILGHLVRKAFWKVFGR---DTRVDLIYDVAHNIAKVEEYEVDGKRRKLVV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|15644109|ref|NP_229158.1| hypothetical protein TM1357 [Thermotoga maritima MSB8]
gi|170289261|ref|YP_001739499.1| hypothetical protein TRQ2_1472 [Thermotoga sp. RQ2]
gi|418045414|ref|ZP_12683509.1| protein of unknown function UPF0027 [Thermotoga maritima MSB8]
gi|4981917|gb|AAD36428.1|AE001789_13 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|170176764|gb|ACB09816.1| protein of unknown function UPF0027 [Thermotoga sp. RQ2]
gi|351676299|gb|EHA59452.1| protein of unknown function UPF0027 [Thermotoga maritima MSB8]
Length = 474
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 146/243 (60%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS G I + + L + L G +W+++ GY ED E E+ G++ ADPS
Sbjct: 120 IYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIEDGGKIHPADPSY 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGTLGAGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFG
Sbjct: 180 VSEEAFERGSDELGTLGAGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +K N D+QL A GQ Y +M
Sbjct: 239 HQVAT--------------DYIRLMRDNLKEHNKNLPDKQLINAPFEHPLGQAYYSAMNC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + L R+AF K F D + +IYDV+HNIAK EE+ VDGK++ L+V
Sbjct: 285 AANYAFANREILGHLVRKAFWKVFGR---DTRVDLIYDVAHNIAKVEEYEVDGKRRKLVV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|339484271|ref|YP_004696057.1| hypothetical protein Nit79A3_2907 [Nitrosomonas sp. Is79A3]
gi|338806416|gb|AEJ02658.1| protein of unknown function UPF0027 [Nitrosomonas sp. Is79A3]
Length = 475
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 143/254 (56%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG +G I +N L++ L G W++++GY A D E+ EE GR+ A P
Sbjct: 124 LFATIPAGVGEEGNISLNPHQLDQVLHGGAQWAVKQGYGDAADLEYVEENGRVAGAIPEN 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+V+ IYD A G+ + GQ+ + IH GSRG G
Sbjct: 184 VSELAKKRQRGEMGTLGSGNHYLEVQVVEHIYDALTAQAFGLHE-GQLIISIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L+ + KA R I DR+LACA I S EGQ Y+ +M A
Sbjct: 243 HQVGT--------------DYLMMLAKAASRLGIHLPDRELACAPIKSPEGQQYIGAMNA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R FA+ + + ++DVSHN K E H VDGK + L V
Sbjct: 289 AINCALANRQILTHLTRATFAEVYPHAA----LETLFDVSHNTCKEEMHEVDGKSRLLHV 344
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 345 HRKGATRAFAPGHP 358
>gi|148270555|ref|YP_001245015.1| hypothetical protein Tpet_1426 [Thermotoga petrophila RKU-1]
gi|147736099|gb|ABQ47439.1| protein of unknown function UPF0027 [Thermotoga petrophila RKU-1]
Length = 474
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 146/243 (60%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVGS G I + + L + L G +W+++ GY ED E E+ G++ ADPS
Sbjct: 120 IYEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKAGYGLEEDLERIEDGGKIHPADPSH 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGTLGAGNH+ E+Q+V EIYD+ A G+E +G + VMIHSGSRGFG
Sbjct: 180 VSEEAFERGNDELGTLGAGNHFVEVQMVQEIYDEELAEFFGLE-IGTITVMIHSGSRGFG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +K N D+QL A GQ Y +M
Sbjct: 239 HQVAT--------------DYIRLMRDKLKEHNKNLPDKQLINAPFEHPLGQAYYSAMNC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + L R+AF K F D + +IYDV+HNIAK EE+ VDGK++ L+V
Sbjct: 285 AANYAFANREILGHLVRKAFWKVFGR---DTRVDLIYDVAHNIAKVEEYEVDGKRRKLVV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|222100208|ref|YP_002534776.1| hypothetical protein CTN_1234 [Thermotoga neapolitana DSM 4359]
gi|221572598|gb|ACM23410.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
Length = 474
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 149/243 (61%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +P GVG++G I + + L + L G +W+++ GY ED E E+ G++ ADP+
Sbjct: 120 IYETVPAGVGARGDIVLGKKGLRKVLVEGAEWAVKAGYGLEEDLERIEDGGKIHPADPNY 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGTLGAGNH+ E+Q+V+EIYD+ A G+E VG + +MIHSGSRGFG
Sbjct: 180 VSEEAFERGSDELGTLGAGNHFIEVQMVEEIYDRDLAEFFGLE-VGTITIMIHSGSRGFG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +K N + D+QL A GQ Y +M
Sbjct: 239 HQVAT--------------DYIRLMRDRLKEHNRDLPDKQLINAPFEHPLGQAYYSAMNC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + L R+AF K F D + +IYDV+HNIAK EE+ +DGK+K L+V
Sbjct: 285 AANYAFANREILGHLVRKAFWKVFGK---DTRVELIYDVAHNIAKVEEYEIDGKRKKLVV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|193212285|ref|YP_001998238.1| hypothetical protein Cpar_0618 [Chlorobaculum parvum NCIB 8327]
gi|193085762|gb|ACF11038.1| protein of unknown function UPF0027 [Chlorobaculum parvum NCIB
8327]
Length = 465
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 146/251 (58%), Gaps = 19/251 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVG I +++ L++ L G + GY ED H E G + AD SK
Sbjct: 125 IYRQVPSGVGHGNQITFSSKQLDQVLRDGAPRMVEFGYGEPEDLGHIESGGVLDAADASK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGT+GAGNH+ EI +D IYD AA +MG+ + GQV + +H+GSRG G
Sbjct: 185 VSEHAKQRGRDQLGTMGAGNHFVEIDRIDTIYDCDAAGRMGLFE-GQVVIQLHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M +AM I DR+L C S EGQ+Y +M+A
Sbjct: 244 HQIAT--------------DFIRVMNRAMPMYGITVPDRELCCVPFRSAEGQEYFSAMSA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFAW NR +T+ RQA+ ++P + V+YDV+HNIAK E H +DG+ + LLV
Sbjct: 290 GANFAWSNRQLITWEIRQAWKAVIGSSP----LRVVYDVAHNIAKVETHEIDGQSRQLLV 345
Query: 241 HRKVSEPSHPG 251
HRK + + PG
Sbjct: 346 HRKGATRAFPG 356
>gi|82702032|ref|YP_411598.1| hypothetical protein Nmul_A0903 [Nitrosospira multiformis ATCC
25196]
gi|82410097|gb|ABB74206.1| Protein of unknown function UPF0027 [Nitrosospira multiformis ATCC
25196]
Length = 475
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 143/254 (56%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG +G I +N L++ + G W++++GY D ++ EE GR+ A P
Sbjct: 124 LFRAIPAGVGEEGEIKLNPEQLDQVMHGGAHWAVQQGYGTPADLDYVEEQGRVAGAIPEN 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+VD I+D A +G+ + GQ+ + IH GSRG G
Sbjct: 184 VSELAKKRQRGEMGTLGSGNHYLEVQVVDRIFDPGVALALGLHE-GQILISIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D LV + KA R I DR+LACA + S EGQ Y+ +M A
Sbjct: 243 HQIGT--------------DYLVLLAKAASRSGIHLPDRELACAPVKSPEGQQYIGAMNA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R F + + ++ ++DVSHN K E H +DG+ + L V
Sbjct: 289 AINCALANRQILTHLTRSVFTEIYPQA----ELETLFDVSHNTCKAETHQIDGESRLLYV 344
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 345 HRKGATRAFGPGHP 358
>gi|167387459|ref|XP_001738172.1| hypothetical protein [Entamoeba dispar SAW760]
gi|327488453|sp|B0EIW5.1|RTCB2_ENTDS RecName: Full=tRNA-splicing ligase RtcB homolog 2
gi|165898749|gb|EDR25533.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 524
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 146/240 (60%), Gaps = 17/240 (7%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+IP GVG+ + +++ E + G++W +++ W ED +CEE GR++N+DP VS
Sbjct: 172 NIPSGVGTTSNQTLTEKEMNEIMNEGLEWLVKKDLAWKEDLVYCEENGRIINSDPHLVSQ 231
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A+ RG QLGTLG+GNHY EIQ VDEI D AA +MGI +GQ+C+MIH GSRG GHQV
Sbjct: 232 KARGRGRNQLGTLGSGNHYLEIQRVDEIMDMEAAKQMGISHIGQICIMIHCGSRGLGHQV 291
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C +V + + + N D QL S GQ Y K+M AAAN
Sbjct: 292 ---------CQDFV--------DLCVNQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAAN 334
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A+ NR +++ R F + F +P DLDMH++YDV HNIAK E H++DG + +VHRK
Sbjct: 335 YAFANRGMISYHVRCTFEQVFKKSPKDLDMHLVYDVCHNIAKEEIHLIDGNEIKCIVHRK 394
>gi|375095727|ref|ZP_09741992.1| hypothetical protein SacmaDRAFT_3057 [Saccharomonospora marina
XMU15]
gi|374656460|gb|EHR51293.1| hypothetical protein SacmaDRAFT_3057 [Saccharomonospora marina
XMU15]
Length = 472
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 141/233 (60%), Gaps = 24/233 (10%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNH 81
LE L G +++ G+ A D + CE+ GR+ +ADPS VS RA +RGL Q+G+LG+GNH
Sbjct: 143 LERVLTGGAGYAVDSGHGVARDLDRCEDGGRVEDADPSLVSRRAFERGLGQVGSLGSGNH 202
Query: 82 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDA 141
+ E+Q V+EIYD AA+ G+ QVCVMIH GSRG GHQV T D
Sbjct: 203 FLEVQAVEEIYDDTAAAAFGLRR-DQVCVMIHCGSRGLGHQVCT--------------DY 247
Query: 142 LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFA 201
+ ME+ M R +I+ DRQLACA + S+EG DYL+++AAA N+A NR +T R+AF
Sbjct: 248 VRAMERVMSRYDIQVPDRQLACAPVVSREGGDYLRALAAATNYARANRQLLTETARRAFE 307
Query: 202 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS----EPSHP 250
D ++YDVSHN+A E H V+G+ + L VHRK + P HP
Sbjct: 308 SHLGGGLD-----LVYDVSHNLATIETHEVNGRARRLCVHRKGATRALPPRHP 355
>gi|386811826|ref|ZP_10099051.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386404096|dbj|GAB61932.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 483
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 156/251 (62%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +IP GVGS + I ++ ++ + L+ G W++ +GY ED + EE G + A+P
Sbjct: 125 LFINIPSGVGSHRKDIRLSLQEEKNVLKNGARWAVSQGYGAKEDLAYIEENGCIAGANPE 184
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RG QLGTLG+GNH+ E+ V EIY++ A +G+E +V +++H+GSRG
Sbjct: 185 FVSNRALERGRAQLGTLGSGNHFVEVGYVSEIYNEKIAHVLGLEK-DRVTIVVHTGSRGL 243
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+Q+ C+ D + M A + +IE DRQL CA I S +GQ+YL +MA
Sbjct: 244 GYQI----CD----------DFIRVMIDASREYHIELPDRQLCCAPIKSPQGQEYLSAMA 289
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAN+A+ NR +T R++F + N +P D + ++YDV HNIAK EEHMVDG++K +
Sbjct: 290 CAANYAFANRQMITHWVRESFERTLNISPKDAQLSLLYDVCHNIAKFEEHMVDGQKKRVC 349
Query: 240 VHRKVSEPSHP 250
VHRK + S P
Sbjct: 350 VHRKGATRSFP 360
>gi|374856010|dbj|BAL58864.1| hypothetical conserved protein [uncultured candidate division OP1
bacterium]
Length = 481
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 146/252 (57%), Gaps = 18/252 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F IP G+G I+ ++D L++ G+ W+LR GY ED EHCE+ G ADP
Sbjct: 123 LFSEIPTGIGEGSIVGKLSKDELDKVAVQGVQWALRHGYAVEEDLEHCEDNGVRPGADPD 182
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI-EDVGQVCVMIHSGSRG 118
VS AK+R QLG+LG+GNH+ E+Q V EI+D+ A G+ +D QV VMIH GSRG
Sbjct: 183 AVSTEAKERAQKQLGSLGSGNHFLEVQRVAEIFDEDIARAFGLFQD--QVVVMIHCGSRG 240
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
+GHQ+ T D L +E+ + DRQLACA ++SK QDY +M
Sbjct: 241 YGHQICT--------------DYLRLIEREFRDLLSSLPDRQLACAPVHSKLAQDYYAAM 286
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A NFAW NR + R+ F K F + +L MH++YDV+HNI K E H ++G++ +
Sbjct: 287 NCAINFAWCNRQIIMHKARECFEKVFRASWRELGMHLLYDVAHNIGKRETHRINGREVDV 346
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 347 YVHRKGATRAFP 358
>gi|408421158|ref|YP_006762572.1| hypothetical protein TOL2_C37110 [Desulfobacula toluolica Tol2]
gi|405108371|emb|CCK81868.1| conserved uncharacterized protein, UPF0027 [Desulfobacula toluolica
Tol2]
Length = 477
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 151/256 (58%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS G + + + + L+ G W++++G+ A + E E+ G M +ADP
Sbjct: 120 LFREIPSGIGSTGSLKLTNSEEKNVLKKGSLWAVQQGFGHASNLERTEDGGCMPDADPET 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S RA +RG QLGTLG+GNH+ E+ +V+ I+D AA G+ + GQV +M+H+GSRG G
Sbjct: 180 LSKRALERGKKQLGTLGSGNHFLEVGVVETIFDLEAARAYGLFE-GQVTLMLHTGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ D L M K + I DRQL CARI S++G+ YL +MA
Sbjct: 239 YQV----CD----------DHLAMMTKQANKLGITLPDRQLVCARIQSEQGRHYLSAMAC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + +P+ L M+++YD+ HNIAK E H++DGK++ + V
Sbjct: 285 AANYAWANRQILMHKAGLVLMDILGISPNTLGMNLVYDLCHNIAKKESHIIDGKKQIVCV 344
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 345 HRKGATRSFGPGHPSI 360
>gi|337285622|ref|YP_004625095.1| hypothetical protein Thein_0246 [Thermodesulfatator indicus DSM
15286]
gi|335358450|gb|AEH44131.1| protein of unknown function UPF0027 [Thermodesulfatator indicus DSM
15286]
Length = 476
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 140/243 (57%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS+G I ++ L+E L G W++ +GY + ED E+ EE G + ADP
Sbjct: 123 LFHTIPAGVGSEGKIKLSVSQLDEVLVGGARWAVAKGYGFPEDLEYIEEKGCLPGADPKC 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+ AKKR Q+GTLG+GNHY EIQ V EIY AA G+E +G V V IH GSR G
Sbjct: 183 VSIEAKKRQHRQVGTLGSGNHYLEIQYVAEIYHPEAAEAFGLE-LGDVVVSIHCGSRALG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D L + KA K+ I +R+L CA I S EG+ Y ++MA
Sbjct: 242 HQIAT--------------DYLKVLAKASKKYGIPIKERELVCAPIRSPEGEQYYRAMAC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+ FA+ + +IYDVSHN K EEH V+GK K L V
Sbjct: 288 GVNCALANRQVITHLVREVFAEVLPQA----RISLIYDVSHNTCKIEEHEVNGKMKKLYV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|284165831|ref|YP_003404110.1| hypothetical protein Htur_2560 [Haloterrigena turkmenica DSM 5511]
gi|284015486|gb|ADB61437.1| protein of unknown function UPF0027 [Haloterrigena turkmenica DSM
5511]
Length = 488
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 150/252 (59%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ +EE LE G+DW+L G+ ED HCE+ G AD K
Sbjct: 128 LFTNVPSGLGGGGIVEAGVDTVEEILERGVDWALEHGHAVEEDLLHCEDEGMREGADADK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGDVGEAYGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + + D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEKQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + +++DMH++YDV+HNIAK E H V DG+Q+ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVNDDGEQREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|322420994|ref|YP_004200217.1| hypothetical protein GM18_3507 [Geobacter sp. M18]
gi|320127381|gb|ADW14941.1| protein of unknown function UPF0027 [Geobacter sp. M18]
Length = 486
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 144/260 (55%), Gaps = 22/260 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G + + D ++ G W L+ G+ +D E EE G AD S
Sbjct: 125 LFARIPTGVGCHGFVKLKQDDFLSVVQQGSRWCLKNGFATRDDLEMTEEGGCFPGADASH 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVD--EIYDKWAASKMGIEDV-GQVCVMIHSGSR 117
VS +A +RG QLGTLG+GNHY EIQ+V I D+ A G+ V QV +M H GSR
Sbjct: 185 VSEKAVERGYNQLGTLGSGNHYCEIQVVQPQNIMDQELADAFGLTVVPNQVVIMFHCGSR 244
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLK 176
GFGHQVAT D L M+R I+ DR+LACA +S EGQ Y
Sbjct: 245 GFGHQVAT--------------DYLKLFLSVMQRKYGIKIVDRELACAPFHSPEGQAYFS 290
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A N A+ NR + R+ F++ F+ +PD+L M ++YDV+HN AK E+H +G QK
Sbjct: 291 AMKCAVNMAFANRQVILHRVREVFSELFHASPDELGMRMVYDVAHNTAKLEKHRCNGSQK 350
Query: 237 TLLVHRKVSE----PSHPGV 252
LLVHRK S P PG+
Sbjct: 351 ELLVHRKGSTRAFGPGLPGL 370
>gi|430745856|ref|YP_007204985.1| hypothetical protein Sinac_5138 [Singulisphaera acidiphila DSM
18658]
gi|430017576|gb|AGA29290.1| hypothetical protein Sinac_5138 [Singulisphaera acidiphila DSM
18658]
Length = 489
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 144/255 (56%), Gaps = 20/255 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG +G + L +E G + + +G+ D E GR+ ADP +
Sbjct: 131 LFREIPTGVGQRGRFLFDKPKLSRLMEQGSAYVVEQGWGTVRDLGFTEAGGRLDGADPDR 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA RG Q GTLG+GNH+ E+Q+VD I+D+ AA MG+ + GQV V+IHSGSRG G
Sbjct: 191 VSDRAFTRGYDQCGTLGSGNHFLEVQVVDRIHDQEAADVMGLRE-GQVTVLIHSGSRGLG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ D L + A KR D QLACA + S EGQ YL +M A
Sbjct: 250 YQV----CD----------DYLGVFKGAPKRYGFSLPDPQLACAPVRSPEGQSYLGAMRA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK-QKTLL 239
AAN+AW NR +T R+ FA+ T + L M ++YDV+HNIAK E H V G K +
Sbjct: 296 AANYAWCNRQLLTHQAREVFARVLGTPWESLGMDLVYDVAHNIAKFEHHQVGGGISKQVC 355
Query: 240 VHRKVS----EPSHP 250
VHRK + P HP
Sbjct: 356 VHRKGATRAFPPGHP 370
>gi|163782479|ref|ZP_02177476.1| hypothetical protein HG1285_16385 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882052|gb|EDP75559.1| hypothetical protein HG1285_16385 [Hydrogenivirga sp. 128-5-R1-1]
Length = 942
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ ++P GVGS G I ++ +EE L G W++ GY + ED EH E +G + ADP K
Sbjct: 587 ILKNVPAGVGSTGDIKLSHSKMEEVLVKGARWAVEHGYGFEEDLEHIESFGALPEADPDK 646
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
S A +RG +LGT+G+GNH+ E+Q V+EIYD+ A K+G+ + GQV +M+HSGSRGFG
Sbjct: 647 ASQEAYERGSDELGTVGSGNHFVEVQFVEEIYDEDVAQKIGLNE-GQVTIMVHSGSRGFG 705
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L + + IE D QLAC SKEGQ Y K+M A
Sbjct: 706 HQVCT--------------DYLKVAVNTLPKYGIELPDPQLACMPFLSKEGQAYFKAMCA 751
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+A+ NR + F K + +DL +IYD +HNIAK E H V K K ++V
Sbjct: 752 SANYAFANRQILGFKTANTVRKFLGLSWEDLGYRLIYDHAHNIAKVEGHRVGNKVKKVVV 811
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 812 HRKGATRAFP 821
>gi|383788369|ref|YP_005472938.1| hypothetical protein CSE_07090 [Caldisericum exile AZM16c01]
gi|381364006|dbj|BAL80835.1| hypothetical protein CSE_07090 [Caldisericum exile AZM16c01]
Length = 476
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 149/250 (59%), Gaps = 16/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS + + + A+++G++W++ +G+ ED E+ E+ GR L ADP
Sbjct: 120 LFKMIPAGLGSTSDYTFSIEESKRAMKLGLEWAVEKGFAKEEDIENIEDNGR-LEADPDC 178
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG + GTLGAGNH+ E+ V EIYDK A+ G+ + GQ+ V +H+GSRG G
Sbjct: 179 VSRHAIERGREEFGTLGAGNHFLEVDKVVEIYDKDLANAWGLYE-GQIVVWMHTGSRGLG 237
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D L M M++ + DR I Q YL +M +
Sbjct: 238 HQIAT--------------DYLDLMRPKMEKFGFKLVDRDSVYFPIQEDLSQRYLLAMGS 283
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR +T+ R+AF+K F + L M ++YDV+HNIAK E++ V+GK +TLLV
Sbjct: 284 AANFAWVNRQVLTYFVRKAFSKVFGMDYEKLGMEILYDVAHNIAKQEQYEVNGKLETLLV 343
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 344 HRKGATRSFP 353
>gi|430761145|ref|YP_007217002.1| Protein RtcB [Thioalkalivibrio nitratireducens DSM 14787]
gi|430010769|gb|AGA33521.1| Protein RtcB [Thioalkalivibrio nitratireducens DSM 14787]
Length = 476
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 146/254 (57%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS G I + + + + L G W++ G+ ED E EE G+M ADP
Sbjct: 123 LFAGIPAGLGSTGQIHLRDQQMTDMLRGGAAWAVERGFGQPEDLERIEERGQMAGADPEA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KR ++GTLG+GNHY E+Q + ++D A+ G+ + GQV V IH GSRG G
Sbjct: 183 VSQQARKRQRNEMGTLGSGNHYLEVQHITRVFDPEVAAAFGLAE-GQVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A K IE DR+LACA I+S+ GQ YL +M A
Sbjct: 242 HQIGT--------------EFLREMAIAAKGHGIELPDRELACAPIHSEIGQRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ FA+ D ++ ++YDVSHN KTE H+VDG+ + L V
Sbjct: 288 AINCALANRQILTHLAREVFAEVL----PDANLRLLYDVSHNTCKTERHVVDGRDRELYV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAFGPGHP 357
>gi|443622127|ref|ZP_21106667.1| hypothetical protein STVIR_0572 [Streptomyces viridochromogenes
Tue57]
gi|443344347|gb|ELS58449.1| hypothetical protein STVIR_0572 [Streptomyces viridochromogenes
Tue57]
Length = 470
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 146/251 (58%), Gaps = 25/251 (9%)
Query: 5 IPVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP G G G+ + LE L G +++ EG+ D CE+ G + +AD +VS
Sbjct: 123 IPRGAGPGGVWHLTGPGQLERILRGGSRYAVEEGHGEERDLTRCEDGGAVADADVDQVSA 182
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA++RGL Q+G+LG+ NH+ E+Q VDE+YD+ AA+ G+ VGQVCVMIH GSRG GHQ+
Sbjct: 183 RARERGLGQVGSLGSANHFLEVQRVDEVYDETAAAAFGLA-VGQVCVMIHCGSRGLGHQI 241
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + M++AM R I DRQLAC + S EG+ YL +MAAAAN
Sbjct: 242 CT--------------DHVRLMDRAMARYGISVPDRQLACTPVESPEGERYLGAMAAAAN 287
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR ++ R+ F + T + ++YDVSHN+AK E H V G ++TL VHRK
Sbjct: 288 YGRANRQLLSDAARRVFRQAAGTR-----LSLVYDVSHNLAKIETHPVSGTRRTLCVHRK 342
Query: 244 VS----EPSHP 250
+ P HP
Sbjct: 343 GATRAFPPGHP 353
>gi|433631751|ref|YP_007265379.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|432163344|emb|CCK60752.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
Length = 432
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 156/247 (63%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGITVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA + TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADETG-TPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|307151093|ref|YP_003886477.1| hypothetical protein Cyan7822_1196 [Cyanothece sp. PCC 7822]
gi|306981321|gb|ADN13202.1| protein of unknown function UPF0027 [Cyanothece sp. PCC 7822]
Length = 483
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 155/243 (63%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ + P GVG KG +P++A +L++ G W+L +GY ED + EE+G + ADP+
Sbjct: 126 LYRNCPSGVGGKGSVPLSAEELDKMCRQGAKWALEKGYATEEDLQRTEEFGCLEGADPNS 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK RG QLGTLGAGNH+ E+ +++EI+D+ AA MG+ + G + + IH GSRGFG
Sbjct: 186 VSKRAKDRGRGQLGTLGAGNHFLEVDVIEEIFDQDAADIMGLYE-GCLAIQIHCGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + + A+ I+ DR+L CA I+SKEGQ YL +M A
Sbjct: 245 HQICT--------------DYVQDFQLAVINYGIQLPDRELVCAPISSKEGQAYLGAMKA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+ NR ++ + RQ+F + F + + + +YD++HN+AK E+H ++G++ T+ V
Sbjct: 291 AANFAFANRQTLAYHARQSFEEVFGSQTGNHALRQVYDIAHNMAKIEQHNINGEEMTVCV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|433635712|ref|YP_007269339.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|432167305|emb|CCK64816.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
Length = 432
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTTGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ EIQ VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEIQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADATG-TPLDL----LYDVSHNLAKIESHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|315425154|dbj|BAJ46825.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 959
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 150/260 (57%), Gaps = 24/260 (9%)
Query: 1 MFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLRE-GYIWAEDKEHCEEYGR------ 52
+F ++P G+GS+ + DL+ G + + + G W+ED + EE GR
Sbjct: 591 VFRNVPAGLGSRRKDFVVTHSDLDRVALEGARYVIEKYGLGWSEDFKKMEEEGRYPSYKA 650
Query: 53 --MLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCV 110
+ + DPS VS AK RG Q+GTLG+GNH+ EIQ VD+IYD AA MGI GQ+ V
Sbjct: 651 GNIPDPDPSIVSREAKARGESQIGTLGSGNHFLEIQRVDKIYDPRAAKAMGITQEGQITV 710
Query: 111 MIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKE 170
+IH GSRG+GHQ+ + D L ME+A+ + N+ DR+LAC NS E
Sbjct: 711 LIHCGSRGYGHQICS--------------DFLRIMERAVAKYNLRLPDRELACTPANSPE 756
Query: 171 GQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
YLK+ A NFA+ NR +++ RQ+F + F + DD+ M ++YDV HN+ K E+H
Sbjct: 757 ATQYLKAFGCAVNFAFANRQAISHWVRQSFEQVFKRSADDMGMQIVYDVCHNVLKFEKHK 816
Query: 231 VDGKQKTLLVHRKVSEPSHP 250
+DG+ K ++ HRK + S P
Sbjct: 817 IDGEMKDVVAHRKGATRSFP 836
>gi|386005522|ref|YP_005923801.1| hypothetical protein MRGA423_16440 [Mycobacterium tuberculosis
RGTB423]
gi|380726010|gb|AFE13805.1| hypothetical protein MRGA423_16440 [Mycobacterium tuberculosis
RGTB423]
Length = 400
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 53 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 112
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 113 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 171
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 172 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 217
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 218 YGRANRQLLTEATRRVFADATG-TPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 272
Query: 244 VSEPSHP 250
+ S P
Sbjct: 273 GATRSLP 279
>gi|337287771|ref|YP_004627243.1| hypothetical protein TOPB45_0200 [Thermodesulfobacterium sp. OPB45]
gi|334901509|gb|AEH22315.1| protein of unknown function UPF0027 [Thermodesulfobacterium
geofontis OPF15]
Length = 476
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 139/243 (57%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P GVGS+G I ++ L+E L G W++ +GY ED E+ EE G M ADPS
Sbjct: 123 LFETVPSGVGSEGEIKLSPSQLDEVLVGGAKWAVEKGYGELEDLEYIEEKGCMPGADPSY 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSM AKKR Q+GTLG+GNHY EIQ V EIYD+ AS G+ QV + H GSR G
Sbjct: 183 VSMEAKKRQHRQIGTLGSGNHYLEIQYVAEIYDEKTASAFGLFK-DQVVITFHCGSRALG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D L + KA ++ I +++L CA INS EG+ Y K+M
Sbjct: 242 HQIAT--------------DYLPILAKAARKYGIPIKEKELVCAPINSPEGEQYFKAMVC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+ K F + + V+YDVSHN K E H V+GK+ L V
Sbjct: 288 GVNCALANRQVITHLVREVVRKFF----PGIHLKVLYDVSHNTCKVEYHEVNGKRLKLYV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|385995553|ref|YP_005913851.1| hypothetical protein [Mycobacterium tuberculosis CCDC5079]
gi|339295507|gb|AEJ47618.1| hypothetical protein CCDC5079_2428 [Mycobacterium tuberculosis
CCDC5079]
Length = 373
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 26 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 85
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 86 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 144
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 145 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 190
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 191 YGRANRQLLTEATRRVFADATG-TPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 245
Query: 244 VSEPSHP 250
+ S P
Sbjct: 246 GATRSLP 252
>gi|440294508|gb|ELP87525.1| hypothetical protein EIN_098520 [Entamoeba invadens IP1]
Length = 524
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 154/247 (62%), Gaps = 17/247 (6%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+IP GVG+ + ++ ++L E + GM+W Y +D +CEE G++ +A+P +S
Sbjct: 172 NIPSGVGTTSSLRLSVKELREVMNDGMEWLATHNYARPDDFLYCEENGKIPDANPLLISQ 231
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A RG QLGTLG+GNHY E+Q VD IYDK AA +GI ++GQ+CVM+H GSRG GHQV
Sbjct: 232 KAMSRGQNQLGTLGSGNHYLEVQKVDHIYDKEAAQALGITEIGQICVMVHCGSRGLGHQV 291
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C +V + + ++ D+QL NS++G+ Y +M AAAN
Sbjct: 292 ---------CQDFV--------DTFLSKNTANPVDKQLTGVPFNSEDGKKYFSAMNAAAN 334
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FA+ NR +T+ RQ F++ F +P++LD+ ++YDV HNIAK E+H+V+G++ +VHRK
Sbjct: 335 FAFANRGFITYHIRQTFSEVFKKSPEELDLGIVYDVCHNIAKLEKHVVNGEEVECVVHRK 394
Query: 244 VSEPSHP 250
+ + P
Sbjct: 395 GATRAFP 401
>gi|343484258|dbj|BAJ49912.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 962
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 148/260 (56%), Gaps = 24/260 (9%)
Query: 1 MFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLRE-GYIWAEDKEHCEEYGR------ 52
+F ++P G+GS+ + DL+ G + + + G W+ED + EE GR
Sbjct: 594 VFRNVPAGLGSRRKDFVVTHSDLDRVALEGARYVIEKYGLGWSEDFKKMEEEGRYPSYKA 653
Query: 53 --MLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCV 110
+ + DPS VS AK RG Q+GTLG+GNH+ EIQ VD+IYD AA MGI GQ+ V
Sbjct: 654 GNIPDPDPSIVSREAKARGESQIGTLGSGNHFLEIQRVDKIYDPRAAKAMGITQEGQITV 713
Query: 111 MIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKE 170
+IH GSRG+GHQ+ + D L ME+A+ + N+ DR+LAC NS E
Sbjct: 714 LIHCGSRGYGHQICS--------------DFLRIMERAVAKYNLRLPDRELACTPANSPE 759
Query: 171 GQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
YLK+ A NFA+ NR +++ RQ+F + F + DD+ M ++YDV HN+ K E+H
Sbjct: 760 ATQYLKAFGCAVNFAFANRQAISHWVRQSFEQVFKRSADDMGMQIVYDVCHNVLKFEKHK 819
Query: 231 VDGKQKTLLVHRKVSEPSHP 250
VDG + VHRK + S P
Sbjct: 820 VDGSDVDVFVHRKGATRSFP 839
>gi|340627652|ref|YP_004746104.1| hypothetical protein MCAN_26771 [Mycobacterium canettii CIPT
140010059]
gi|340005842|emb|CCC45008.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
Length = 432
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIESHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|289758762|ref|ZP_06518140.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714326|gb|EFD78338.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length = 431
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|218441691|ref|YP_002380020.1| hypothetical protein PCC7424_4795 [Cyanothece sp. PCC 7424]
gi|218174419|gb|ACK73152.1| protein of unknown function UPF0027 [Cyanothece sp. PCC 7424]
Length = 481
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 151/243 (62%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ + P GVG KG IP++A +L++ G W+L +GY AED EE+G + ADP
Sbjct: 126 LYRNCPSGVGEKGSIPLSADELDKMCRQGAKWALEQGYAEAEDLSRTEEFGCLEGADPGS 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK RG QLGTLGAGNH+ E+ +V+EI+D AA MG+ G + + IH GSRGFG
Sbjct: 186 VSKRAKDRGRGQLGTLGAGNHFLEVDVVEEIFDPQAAEIMGLYQ-GCLVIQIHCGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + + A+ I+ DR+L CA INSKEGQ YL +M A
Sbjct: 245 HQICT--------------DYVQDFQLAVINYGIQLPDRELVCAPINSKEGQAYLGAMKA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+ NR ++ + R++FA+ F + L +YD++HN+AK E H ++G++ T+ V
Sbjct: 291 AANFAFANRQALAYHARRSFAEVFGSPEKPLRQ--VYDIAHNMAKIETHKINGEEMTVCV 348
Query: 241 HRK 243
HRK
Sbjct: 349 HRK 351
>gi|433642834|ref|YP_007288593.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|432159382|emb|CCK56686.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
Length = 432
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTTGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADATG-TPLDL----LYDVSHNLAKIESHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|448314293|ref|ZP_21503992.1| hypothetical protein C493_20219 [Natronolimnobius innermongolicus
JCM 12255]
gi|445595405|gb|ELY49514.1| hypothetical protein C493_20219 [Natronolimnobius innermongolicus
JCM 12255]
Length = 488
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 149/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E LE G+DW+L G+ ED HCE+ G AD K
Sbjct: 130 LFANVPSGLGGGGIVESGVDTVDEILERGVDWALEHGHAVEEDLLHCEDEGMREGADADK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 190 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGEAFGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + +D++M ++YDV+HNIAK E H V+GK++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRSWEDMEMELLYDVAHNIAKKETHTVEGKERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|289746429|ref|ZP_06505807.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289686957|gb|EFD54445.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length = 396
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|308379263|ref|ZP_07485684.2| hypothetical protein TMJG_01614 [Mycobacterium tuberculosis
SUMu010]
gi|424948296|ref|ZP_18363992.1| hypothetical protein NCGM2209_2939 [Mycobacterium tuberculosis
NCGM2209]
gi|308357592|gb|EFP46443.1| hypothetical protein TMJG_01614 [Mycobacterium tuberculosis
SUMu010]
gi|358232811|dbj|GAA46303.1| hypothetical protein NCGM2209_2939 [Mycobacterium tuberculosis
NCGM2209]
Length = 433
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 86 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 145
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 146 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 204
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 205 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 250
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 251 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 305
Query: 244 VSEPSHP 250
+ S P
Sbjct: 306 GATRSLP 312
>gi|15842171|ref|NP_337208.1| hypothetical protein MT2707 [Mycobacterium tuberculosis CDC1551]
gi|13882458|gb|AAK47022.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|379028942|dbj|BAL66675.1| hypothetical protein ERDMAN_2891 [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|440582110|emb|CCG12513.1| hypothetical protein MT7199_2665 [Mycobacterium tuberculosis
7199-99]
Length = 432
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|41614875|ref|NP_963373.1| hypothetical protein NEQ078 [Nanoarchaeum equitans Kin4-M]
gi|74579778|sp|Q74MJ0.1|RTCB_NANEQ RecName: Full=tRNA-splicing ligase RtcB
gi|40068599|gb|AAR38934.1| NEQ078 [Nanoarchaeum equitans Kin4-M]
Length = 477
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 157/250 (62%), Gaps = 17/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG G + ++ +L + L+ G++W++ G+ W ED+ E +G + AD
Sbjct: 122 IFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGWEEDRNRIESHGYLDFADSDA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGT+G+GNH+ EIQ+VD+IYD+ A GI + QV V+IH+GSRG G
Sbjct: 182 VSNTAKQRGKDQLGTIGSGNHFLEIQVVDQIYDEEIAKAFGIYEKNQVTVLIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L EK K D DR+L A +SK+ Q+YLK+MAA
Sbjct: 242 HQVAS--------------DYLRLFEKKYKYD---VPDRELIYAPYDSKDAQNYLKAMAA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T+ R++F K + + + ++YD++HNIAK EEH +DGK++ L+V
Sbjct: 285 AANFAWANRQLITYWVRKSFEKVLRKNIESIGLEIVYDLAHNIAKFEEHTIDGKKQKLIV 344
Query: 241 HRKVSEPSHP 250
+RK + + P
Sbjct: 345 YRKGATRAFP 354
>gi|254365299|ref|ZP_04981344.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134150812|gb|EBA42857.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length = 432
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|31793817|ref|NP_856310.1| hypothetical protein Mb2664 [Mycobacterium bovis AF2122/97]
gi|57117009|ref|NP_217147.2| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|121638520|ref|YP_978744.1| hypothetical protein BCG_2658 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662471|ref|YP_001283994.1| hypothetical protein MRA_2659 [Mycobacterium tuberculosis H37Ra]
gi|148823825|ref|YP_001288579.1| hypothetical protein TBFG_12650 [Mycobacterium tuberculosis F11]
gi|224991014|ref|YP_002645701.1| hypothetical protein JTY_2652 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798286|ref|YP_003031287.1| hypothetical protein TBMG_01340 [Mycobacterium tuberculosis KZN
1435]
gi|254551683|ref|ZP_05142130.1| hypothetical protein Mtube_14704 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289444172|ref|ZP_06433916.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289575343|ref|ZP_06455570.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289751257|ref|ZP_06510635.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754751|ref|ZP_06514129.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289762805|ref|ZP_06522183.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294993092|ref|ZP_06798783.1| hypothetical protein Mtub2_00925 [Mycobacterium tuberculosis 210]
gi|297635243|ref|ZP_06953023.1| hypothetical protein MtubK4_14025 [Mycobacterium tuberculosis KZN
4207]
gi|297732237|ref|ZP_06961355.1| hypothetical protein MtubKR_14164 [Mycobacterium tuberculosis KZN
R506]
gi|298526107|ref|ZP_07013516.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306780810|ref|ZP_07419147.1| hypothetical protein TMBG_02769 [Mycobacterium tuberculosis
SUMu002]
gi|306790036|ref|ZP_07428358.1| hypothetical protein TMDG_00349 [Mycobacterium tuberculosis
SUMu004]
gi|306794117|ref|ZP_07432419.1| hypothetical protein TMEG_03311 [Mycobacterium tuberculosis
SUMu005]
gi|306807566|ref|ZP_07444234.1| hypothetical protein TMGG_02239 [Mycobacterium tuberculosis
SUMu007]
gi|306968683|ref|ZP_07481344.1| hypothetical protein TMIG_03962 [Mycobacterium tuberculosis
SUMu009]
gi|313659571|ref|ZP_07816451.1| hypothetical protein MtubKV_14174 [Mycobacterium tuberculosis KZN
V2475]
gi|339632658|ref|YP_004724300.1| hypothetical protein MAF_26500 [Mycobacterium africanum GM041182]
gi|375295551|ref|YP_005099818.1| hypothetical protein TBSG_01350 [Mycobacterium tuberculosis KZN
4207]
gi|378772374|ref|YP_005172107.1| hypothetical protein BCGMEX_2650 [Mycobacterium bovis BCG str.
Mexico]
gi|383308397|ref|YP_005361208.1| hypothetical protein MRGA327_16190 [Mycobacterium tuberculosis
RGTB327]
gi|385991932|ref|YP_005910230.1| hypothetical protein [Mycobacterium tuberculosis CCDC5180]
gi|385999413|ref|YP_005917712.1| hypothetical protein MTCTRI2_2681 [Mycobacterium tuberculosis
CTRI-2]
gi|392387268|ref|YP_005308897.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392431759|ref|YP_006472803.1| hypothetical protein TBXG_001329 [Mycobacterium tuberculosis KZN
605]
gi|397674539|ref|YP_006516074.1| hypothetical protein RVBD_2631 [Mycobacterium tuberculosis H37Rv]
gi|424804967|ref|ZP_18230398.1| hypothetical protein TBPG_02141 [Mycobacterium tuberculosis W-148]
gi|433627768|ref|YP_007261397.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|449064712|ref|YP_007431795.1| hypothetical protein K60_027370 [Mycobacterium bovis BCG str. Korea
1168P]
gi|38258686|sp|P59975.1|RTCB_MYCBO RecName: Full=RNA-splicing ligase RtcB
gi|46397847|sp|P71930.5|RTCB_MYCTU RecName: Full=RNA-splicing ligase RtcB
gi|31619411|emb|CAD94849.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494168|emb|CAL72646.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506623|gb|ABQ74432.1| hypothetical protein MRA_2659 [Mycobacterium tuberculosis H37Ra]
gi|148722352|gb|ABR06977.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774127|dbj|BAH26933.1| hypothetical protein JTY_2652 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319789|gb|ACT24392.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417091|gb|EFD14331.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289539774|gb|EFD44352.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289691844|gb|EFD59273.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695338|gb|EFD62767.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710311|gb|EFD74327.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|298495901|gb|EFI31195.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308326365|gb|EFP15216.1| hypothetical protein TMBG_02769 [Mycobacterium tuberculosis
SUMu002]
gi|308333523|gb|EFP22374.1| hypothetical protein TMDG_00349 [Mycobacterium tuberculosis
SUMu004]
gi|308337550|gb|EFP26401.1| hypothetical protein TMEG_03311 [Mycobacterium tuberculosis
SUMu005]
gi|308346009|gb|EFP34860.1| hypothetical protein TMGG_02239 [Mycobacterium tuberculosis
SUMu007]
gi|308353752|gb|EFP42603.1| hypothetical protein TMIG_03962 [Mycobacterium tuberculosis
SUMu009]
gi|326904243|gb|EGE51176.1| hypothetical protein TBPG_02141 [Mycobacterium tuberculosis W-148]
gi|328458056|gb|AEB03479.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339299125|gb|AEJ51235.1| hypothetical protein CCDC5180_2398 [Mycobacterium tuberculosis
CCDC5180]
gi|339332014|emb|CCC27720.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
gi|341602558|emb|CCC65234.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|344220460|gb|AEN01091.1| hypothetical protein MTCTRI2_2681 [Mycobacterium tuberculosis
CTRI-2]
gi|356594695|gb|AET19924.1| Hypothetical protein BCGMEX_2650 [Mycobacterium bovis BCG str.
Mexico]
gi|378545819|emb|CCE38097.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380722350|gb|AFE17459.1| hypothetical protein MRGA327_16190 [Mycobacterium tuberculosis
RGTB327]
gi|392053168|gb|AFM48726.1| hypothetical protein TBXG_001329 [Mycobacterium tuberculosis KZN
605]
gi|395139444|gb|AFN50603.1| hypothetical protein RVBD_2631 [Mycobacterium tuberculosis H37Rv]
gi|432155374|emb|CCK52624.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|444896168|emb|CCP45429.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|449033220|gb|AGE68647.1| hypothetical protein K60_027370 [Mycobacterium bovis BCG str. Korea
1168P]
Length = 432
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|315425419|dbj|BAJ47083.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 962
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 148/260 (56%), Gaps = 24/260 (9%)
Query: 1 MFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLRE-GYIWAEDKEHCEEYGR------ 52
+F ++P G+GS+ + DL+ G + + + G W+ED + EE GR
Sbjct: 594 VFRNVPAGLGSRRKDFVVTHSDLDRVALEGARYVIEKYGLGWSEDFKKMEEEGRYPSYKA 653
Query: 53 --MLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCV 110
+ + DPS VS AK RG Q+GTLG+GNH+ EIQ VD+IYD AA MGI GQ+ V
Sbjct: 654 GNIPDPDPSIVSREAKARGESQIGTLGSGNHFLEIQRVDKIYDPRAAKAMGITQEGQITV 713
Query: 111 MIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKE 170
+IH GSRG+GHQ+ + D L ME+A+ + N+ DR+LAC +S E
Sbjct: 714 LIHCGSRGYGHQICS--------------DFLRIMERAVAKYNLRLPDRELACTPASSPE 759
Query: 171 GQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
YLK+ A NFA+ NR +++ RQ+F + F + DD+ M ++YDV HNI K E+H
Sbjct: 760 ATQYLKAFGCAVNFAFANRQAISHWVRQSFEQVFKRSADDMGMQIVYDVCHNIVKLEKHK 819
Query: 231 VDGKQKTLLVHRKVSEPSHP 250
VDG + VHRK + S P
Sbjct: 820 VDGSDVDVFVHRKGATRSFP 839
>gi|308232196|ref|ZP_07415246.2| hypothetical protein TMAG_02440 [Mycobacterium tuberculosis
SUMu001]
gi|308374642|ref|ZP_07436834.2| hypothetical protein TMFG_03878 [Mycobacterium tuberculosis
SUMu006]
gi|308377072|ref|ZP_07441062.2| hypothetical protein TMHG_01828 [Mycobacterium tuberculosis
SUMu008]
gi|308380422|ref|ZP_07489903.2| hypothetical protein TMKG_03063 [Mycobacterium tuberculosis
SUMu011]
gi|308214717|gb|EFO74116.1| hypothetical protein TMAG_02440 [Mycobacterium tuberculosis
SUMu001]
gi|308341217|gb|EFP30068.1| hypothetical protein TMFG_03878 [Mycobacterium tuberculosis
SUMu006]
gi|308349024|gb|EFP37875.1| hypothetical protein TMHG_01828 [Mycobacterium tuberculosis
SUMu008]
gi|308361534|gb|EFP50385.1| hypothetical protein TMKG_03063 [Mycobacterium tuberculosis
SUMu011]
Length = 440
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 93 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 152
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 153 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 211
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 212 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 257
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 258 YGRANRQLLTEATRRVFADATG-TPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 312
Query: 244 VSEPSHP 250
+ S P
Sbjct: 313 GATRSLP 319
>gi|123417448|ref|XP_001305113.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121886612|gb|EAX92183.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 518
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 146/245 (59%), Gaps = 23/245 (9%)
Query: 1 MFDHIPVGVGSK--GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADP 58
++ +IPVGVG K GI P R L + + G W+L G+ ED ++CEE G + ADP
Sbjct: 165 LYKYIPVGVGGKLDGICP--CRHLRDVMLKGAGWALENGFAVQEDIDNCEENGCLKGADP 222
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
S +S R RG QLGT+GAGNHY E+Q VD+I D+ A M + + GQV VMIH+GSRG
Sbjct: 223 SLISDRTIARGTGQLGTVGAGNHYIEVQRVDKILDEEKARVMDLHE-GQVVVMIHTGSRG 281
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
GHQVA + V EK +K D+QLA +S+EGQ YL++M
Sbjct: 282 LGHQVADENMK-------------VCSEKFVKE---SLPDKQLAAPSFHSEEGQKYLRAM 325
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAANF W NR + R+AF+ F L+ H++YDV+HNIAK E+H +DG +K
Sbjct: 326 YAAANFVWCNRQVIMHNVRRAFSDVFKDR--KLETHLVYDVAHNIAKVEKHNIDGVEKEY 383
Query: 239 LVHRK 243
+VHRK
Sbjct: 384 IVHRK 388
>gi|422813684|ref|ZP_16862056.1| hypothetical protein TMMG_02643 [Mycobacterium tuberculosis
CDC1551A]
gi|323718783|gb|EGB27941.1| hypothetical protein TMMG_02643 [Mycobacterium tuberculosis
CDC1551A]
Length = 440
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 93 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 152
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 153 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 211
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 212 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 257
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 258 YGRANRQLLTEATRRVFADATG-TPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 312
Query: 244 VSEPSHP 250
+ S P
Sbjct: 313 GATRSLP 319
>gi|91203292|emb|CAJ72931.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 483
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 159/255 (62%), Gaps = 20/255 (7%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +IP GVGS + + ++ +++ L+ G W++ GY ED EH EE G + ADP
Sbjct: 125 LFVNIPSGVGSHRKDLKLSQHEVKNVLKNGAQWAVSHGYGSKEDLEHIEEKGCIFGADPE 184
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RGL QLGTLG+GNH+ E+ V EI+D+ A +G+E G + +MIH+GSRG
Sbjct: 185 LVSTRAIERGLAQLGTLGSGNHFVEVGYVSEIFDEKIARTLGLEKDG-ITIMIHTGSRGL 243
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+QV C+ D + M +A + NIE DRQL CA INS EG+DY +MA
Sbjct: 244 GYQV----CD----------DFIKVMIRASGKYNIELPDRQLCCAPINSPEGRDYFAAMA 289
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAN+A+ NR +T R++F + + +P + + ++YD HNIAK E+H+V+G++K L
Sbjct: 290 CAANYAFANRQMITHWVRESFERALHVSPKESRISLVYDACHNIAKFEDHLVNGQKKRLC 349
Query: 240 VHRKVSE----PSHP 250
VHRK + P+HP
Sbjct: 350 VHRKGATRAFPPNHP 364
>gi|448317565|ref|ZP_21507115.1| hypothetical protein C492_13975 [Natronococcus jeotgali DSM 18795]
gi|445602956|gb|ELY56926.1| hypothetical protein C492_13975 [Natronococcus jeotgali DSM 18795]
Length = 486
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L G+ +D HCE+ G ADPSK
Sbjct: 128 LFANVPSGLGGGGIVEAGVDTVDEILARGVDWALEHGHAVEDDLLHCEDEGTREGADPSK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGEAFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ K D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHKGLLDRLPDKELAAAPAGSQLAEDYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + + ++M ++YDV+HNIAK E H VDG ++ L V
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEAMEMDLLYDVAHNIAKKETHTVDGTERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|123438712|ref|XP_001310135.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121891892|gb|EAX97205.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 501
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 140/247 (56%), Gaps = 27/247 (10%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ +IPVG+G K N L E L G W+L GY ED E+CEE G + A P
Sbjct: 148 FYSYIPVGIGGKRPDICNRAGLMEVLVKGAKWALEHGYAIPEDIENCEENGCLEGARPDL 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S R RG+ QLGT+G GNHY E+Q VD+I D+ AA MG+ + GQVCVMIH+GSRG G
Sbjct: 208 LSERVISRGVFQLGTVGCGNHYVELQRVDKILDEKAAKAMGLFE-GQVCVMIHTGSRGLG 266
Query: 121 HQVA---TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
HQ+A C + C P L D+QLA S GQ YL
Sbjct: 267 HQIADEMINLCSQSYC-----PSTL--------------PDKQLAAPPYTSDVGQKYLAC 307
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDL-DMHVIYDVSHNIAKTEEHMVDGKQK 236
M AAANFAW NR + R+AF F D L + H++YDV+HNIAK E+H++DG +K
Sbjct: 308 MYAAANFAWCNRQIIMNDVRRAFRDVFR---DKLYETHLVYDVAHNIAKVEKHVIDGVEK 364
Query: 237 TLLVHRK 243
T +VHRK
Sbjct: 365 TFVVHRK 371
>gi|406938891|gb|EKD72024.1| hypothetical protein ACD_46C00030G0008 [uncultured bacterium]
Length = 473
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 152/258 (58%), Gaps = 23/258 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP GVG +G + + +LEE + G W++ +GY ED E+ EE G + A+P
Sbjct: 120 LFDIIPAGVGVEGELRLTVHELEEVMYGGAKWAVNKGYGVKEDLEYIEEKGCIDGAEPKY 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R L ++GTLG+GNHY E+Q+V +IYD+ AA G+ + Q+ + IH GSRG G
Sbjct: 180 VSDHAKERQLGEMGTLGSGNHYLEVQVVKQIYDQQAADAYGL-SLDQILISIHCGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D LV + KA KR N+ DR+LACA I S+EGQ Y+ +M +
Sbjct: 239 HQIGS--------------DYLVTLAKAAKRLNVHLPDRELACAPILSEEGQQYIGAMHS 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+AF + P+ + ++DVSHN K E+H VDG+ K + +
Sbjct: 285 GINCALANRQMITELTRRAFHQ---VIPNAY-LETLFDVSHNTCKREKHNVDGRLKEIYI 340
Query: 241 HRKVSE----PSHPGVSR 254
HRK + P HP + +
Sbjct: 341 HRKGATRAFGPEHPSLPK 358
>gi|386813759|ref|ZP_10100983.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403256|dbj|GAB63864.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 485
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 146/264 (55%), Gaps = 21/264 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVGS G + ++ + + +E G W ++ GY W ED E EE G + AD K
Sbjct: 125 LYKKIPAGVGSTGFLKVSRDEFRQIVEQGAHWCVKHGYGWEEDLEMTEESGCIEGADSKK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+S +A RG Q+GTLG+GNHY EIQ+ + I D+ A GI Q+ VM H+GSRG
Sbjct: 185 ISEKAIDRGYNQIGTLGSGNHYLEIQVARREYIMDEKLARVFGITVPDQIAVMFHTGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMK-RDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L K M+ + I DR+LA A NS EG+DY +
Sbjct: 245 FGHQVAT--------------DYLQVFLKVMQSKYGISVLDRELASAPFNSPEGKDYYAA 290
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M N ++ NR + R+ F+ F +P D+ M+++YDV+HN AK E H ++G+ K
Sbjct: 291 MKCGINMSFANRQLILHRIREVFSDVFGRSPQDMGMYMVYDVAHNTAKVENHSINGQTKK 350
Query: 238 LLVHRKVSE----PSHPGVSRNKK 257
LLVHRK + P GV + K
Sbjct: 351 LLVHRKGATRAFGPGMEGVPKRYK 374
>gi|257053819|ref|YP_003131652.1| hypothetical protein Huta_2758 [Halorhabdus utahensis DSM 12940]
gi|256692582|gb|ACV12919.1| protein of unknown function UPF0027 [Halorhabdus utahensis DSM
12940]
Length = 486
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G++ + LEE L G++W+L EGY +D HCE+ G ADP
Sbjct: 128 LFEAIPSGLGGGGVVQTDVDTLEEVLTRGVEWALDEGYAVEDDLAHCEDEGVRPGADPDA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V ++Y + A G+ + Q+ V+IH GSRG G
Sbjct: 188 VSKKAKDRGRQQLGSLGSGNHFLEVQRVTDVYREDVAESFGLSE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E+A + + D++LA A S + Y +M A
Sbjct: 247 HQVCT--------------DYLRDIEQAHQGLLEQLPDKELAAAPAGSHLAEAYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H ++G+ + L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMELLYDVAHNIAKKETHTIEGQDRELFV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|448738949|ref|ZP_21720969.1| hypothetical protein C451_15493 [Halococcus thailandensis JCM
13552]
gi|445800763|gb|EMA51111.1| hypothetical protein C451_15493 [Halococcus thailandensis JCM
13552]
Length = 485
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 154/250 (61%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G G++ + +EE L+ G++W+L EG+ +D HCE+ GR +ADP+
Sbjct: 128 LFANVPSGLGGGGVVESDVETVEEILDRGVEWALDEGHAVEDDLAHCEDEGRRPDADPAV 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++ + A G+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFREGVADSYGL-SADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T E + P+ L Q+ D++LA A S+ ++Y +M A
Sbjct: 247 HQVCT---EYTREVEQAHPELLDQLP-----------DKELAAAPAGSQLAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNR + RQ F + F+ + ++++M+++YDV+HNIAK E+H +DG+++ L V
Sbjct: 293 AINYAWVNRQLIMDRTRQVFERVFDRSWEEMEMNLLYDVAHNIAKKEDHEIDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|212218599|ref|YP_002305386.1| RtcB [Coxiella burnetii CbuK_Q154]
gi|212012861|gb|ACJ20241.1| RtcB [Coxiella burnetii CbuK_Q154]
Length = 477
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 139/243 (57%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG G I + L+E L G W+++ G+ ED EE G+M A P
Sbjct: 124 LYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQMKGAIPDN 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+VD+IYDK AA G+E QV + IH GSRG G
Sbjct: 184 VSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D LV + K R + DR+LACA I S EGQ YL +M A
Sbjct: 243 HQIGS--------------DYLVALAKEASRLGVTLPDRELACAPIKSAEGQRYLGAMNA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+AF K + + + +YDVSHN K EEH+++G+++ L +
Sbjct: 289 GINCALANRQLLTHLTREAFGKIIPS----VFIETLYDVSHNTCKQEEHLINGQKRRLYI 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|164685934|ref|ZP_01947267.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165923968|ref|ZP_02219800.1| conserved hypothetical protein [Coxiella burnetii Q321]
gi|164601455|gb|EAX32118.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165916595|gb|EDR35199.1| conserved hypothetical protein [Coxiella burnetii Q321]
Length = 476
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 139/243 (57%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG G I + L+E L G W+++ G+ ED EE G+M A P
Sbjct: 123 LYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQMKGAIPDN 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+VD+IYDK AA G+E QV + IH GSRG G
Sbjct: 183 VSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D LV + K R + DR+LACA I S EGQ YL +M A
Sbjct: 242 HQIGS--------------DYLVALAKEASRLGVTLPDRELACAPIKSAEGQRYLGAMNA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+AF K + + + +YDVSHN K EEH+++G+++ L +
Sbjct: 288 GINCALANRQLLTHLTREAFGKIIPS----VFIETLYDVSHNTCKQEEHLINGQKRRLYI 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|167562703|ref|ZP_02355619.1| hypothetical protein BoklE_09104 [Burkholderia oklahomensis EO147]
Length = 477
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 145/256 (56%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS G + ++A ++ L G W++++GY D E EE G M +A PS
Sbjct: 123 LFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIEEGGVMRHAKPSA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q + +IYD A + G++ GQV V IH GSRG G
Sbjct: 183 VSALAKKRQRDEMGTLGSGNHYLEVQEIADIYDPACAQRYGLQR-GQVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A K I DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKEMVIAAKSHGIALPDRELACAPILSDLGERYLDAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ F K + ++YDVSHN K EEH++DG+++ L V
Sbjct: 288 AINCALANRQILTHLTREVFEKVLPAA----QLTLLYDVSHNTCKVEEHVIDGRRRQLYV 343
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 344 HRKGATRAFGPGHPAL 359
>gi|448306210|ref|ZP_21496119.1| hypothetical protein C494_00517 [Natronorubrum bangense JCM 10635]
gi|445598624|gb|ELY52679.1| hypothetical protein C494_00517 [Natronorubrum bangense JCM 10635]
Length = 488
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G GI+ ++E L G+DW+L GY +D HCE+ G ADPSK
Sbjct: 130 LFANIPSGLGGGGIVESGVDTVDEILARGVDWALENGYAVEDDLLHCEDEGHREEADPSK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V +++ S G+E+ Q+ V+IH GSRG G
Sbjct: 190 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFHDEVGSAYGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEKQHQGLLNKLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ F + F+ + ++++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 295 AINFAWVNRQLIMHRTREVFERVFDRSWEEMEMDLLYDVAHNIAKKEVHDVDGEERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|197117379|ref|YP_002137806.1| hypothetical protein Gbem_0989 [Geobacter bemidjiensis Bem]
gi|197086739|gb|ACH38010.1| protein of unknown function UPF0027 [Geobacter bemidjiensis Bem]
Length = 486
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 139/249 (55%), Gaps = 18/249 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G + + D ++ G W L+ G+ ED + EE G AD S
Sbjct: 125 LFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCFSGADASH 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDV-GQVCVMIHSGSR 117
+S +A +RG QLGTLG+GNHY EIQ+V + I D A+ G+ V QV +M H GSR
Sbjct: 185 ISDKAVERGYNQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFHCGSR 244
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLK 176
GFGHQVAT D L M R I+ DR+LACA +S EGQ Y
Sbjct: 245 GFGHQVAT--------------DYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFS 290
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A N A+ NR + R+ F+ F+ +PD+L + ++YDV+HN AK E H V+G +K
Sbjct: 291 AMKCAVNMAFANRQVILHRIREVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRK 350
Query: 237 TLLVHRKVS 245
LLVHRK S
Sbjct: 351 ELLVHRKGS 359
>gi|320102578|ref|YP_004178169.1| hypothetical protein Isop_1031 [Isosphaera pallida ATCC 43644]
gi|319749860|gb|ADV61620.1| protein of unknown function UPF0027 [Isosphaera pallida ATCC 43644]
Length = 489
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 141/243 (58%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+H+P GVG G + L++ +E G + + +G+ A D + E G + +ADP +
Sbjct: 132 LFEHVPTGVGQSGKYLFDKPKLKKLMEQGSKYVVDKGFGVARDLDFTEAGGCLDDADPDR 191
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA RG Q GTLG+GNH+ E+Q++D I D AA MG+ + G V V+IHSGSRG G
Sbjct: 192 VSDRAYTRGYDQCGTLGSGNHFLEVQVIDRILDPEAAEVMGLAE-GMVTVLIHSGSRGLG 250
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ D L A KR D QLACA I S EGQ YL +M A
Sbjct: 251 YQV----CD----------DHLAMFRDAPKRYGFTLPDPQLACAPIQSPEGQAYLGAMRA 296
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R+ F F + L + ++YDV+HNIAK E H V+G +K + V
Sbjct: 297 AANYAWCNRQLLTHQAREVFRMVFGKRWESLGLDLVYDVAHNIAKFERHHVNGVEKLVCV 356
Query: 241 HRK 243
HRK
Sbjct: 357 HRK 359
>gi|167569885|ref|ZP_02362759.1| hypothetical protein BoklC_08583 [Burkholderia oklahomensis C6786]
Length = 477
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 145/256 (56%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS G + ++A ++ L G W++++GY D E EE G M +A PS
Sbjct: 123 LFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIEEGGVMRHAKPSA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q + +IYD A + G++ GQV V IH GSRG G
Sbjct: 183 VSALAKKRQRDEMGTLGSGNHYLEVQEIADIYDPACAQRYGLQR-GQVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A K I DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKEMVIAAKSHGIALPDRELACAPILSDLGERYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ F K + ++YDVSHN K EEH++DG+++ L V
Sbjct: 288 AINCALANRQILTHLTREVFEKVLPAA----QLTLLYDVSHNTCKVEEHVIDGRRRQLYV 343
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 344 HRKGATRAFGPGHPAL 359
>gi|428774926|ref|YP_007166713.1| hypothetical protein PCC7418_0262 [Halothece sp. PCC 7418]
gi|428689205|gb|AFZ42499.1| protein of unknown function UPF0027 [Halothece sp. PCC 7418]
Length = 483
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 149/243 (61%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ + P GVG G +P++ ++ E G W L +GY ED E EE+G + ADP++
Sbjct: 126 LYHNCPSGVGRGGSLPLSPKEFSEVCREGARWDLAQGYAIPEDLERTEEFGCLEGADPTQ 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
S RAK+RG QLGTLGAGNH+ E+ +V++++D AA+ MG+E G + V IH GSRGFG
Sbjct: 186 ASKRAKQRGKDQLGTLGAGNHFLEVDVVEDVFDPEAAAVMGLEK-GCLAVQIHCGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + +KA+ I+ DR+L CA +NS EG+ YL +M A
Sbjct: 245 HQICT--------------DYVQDFQKAVLNYGIQLPDRELVCAPLNSPEGEGYLTAMKA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+ NR ++ + R++F F D + +YD++HN+AK E H++ G++ T+ V
Sbjct: 291 AANFAFANRQALAYHARRSFEAVFGAQADYPPLRQVYDIAHNMAKIETHVIGGEEMTVCV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|76801733|ref|YP_326741.1| RtcB-like protein 1 [Natronomonas pharaonis DSM 2160]
gi|76557598|emb|CAI49180.1| 3'-5' RNA ligase [Natronomonas pharaonis DSM 2160]
Length = 485
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +P G+G GI+ + ++ LE G+DW+ EGY D EHCE+ G +ADPS
Sbjct: 128 LFDAVPTGLGGGGIVQGDRDTVDAVLERGVDWAREEGYAVKSDLEHCEDEGVRPDADPSA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V +++D A G+E Q+ ++IH GSRG G
Sbjct: 188 VSQKAKDRGRNQLGSLGSGNHFLEVQRVTDVFDADIADAYGLE-ADQIVILIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV D L +E+A + D++LA A S+ +DY +M A
Sbjct: 247 HQVCN--------------DYLRDIEQAHSGLLSKLPDKELAAAPAGSQLAEDYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR +T R FA F +DL M ++YDV+HNIAK E H VDG+ K L V
Sbjct: 293 AINFAWVNRQLITHQTRTVFADVFGEPWEDLGMELLYDVAHNIAKKEVHDVDGEDKELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|448322486|ref|ZP_21511956.1| hypothetical protein C491_15987 [Natronococcus amylolyticus DSM
10524]
gi|445601244|gb|ELY55233.1| hypothetical protein C491_15987 [Natronococcus amylolyticus DSM
10524]
Length = 486
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 149/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ + ++E L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 128 LFANVPSGLGGGGIVEADIDAVDEILARGVDWALEHGHAVEDDLLHCEDEGMREGADPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGDVGEAFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ K D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHKGLLDRLPDKELAAAPAGSQLAEDYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + ++++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMEMELLYDVAHNIAKKELHTVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|253701866|ref|YP_003023055.1| hypothetical protein GM21_3271 [Geobacter sp. M21]
gi|251776716|gb|ACT19297.1| protein of unknown function UPF0027 [Geobacter sp. M21]
Length = 486
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 139/249 (55%), Gaps = 18/249 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G + + D ++ G W L+ G+ ED + EE G AD S
Sbjct: 125 LFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCFSGADASH 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDV-GQVCVMIHSGSR 117
+S +A +RG QLGTLG+GNHY EIQ+V + + D A+ G+ V QV +M H GSR
Sbjct: 185 ISDKAVERGYNQLGTLGSGNHYCEIQVVKPENVMDAELAAAFGLTMVPNQVVIMFHCGSR 244
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD-NIETNDRQLACARINSKEGQDYLK 176
GFGHQVAT D L M R I+ DR+LACA +S EGQ Y
Sbjct: 245 GFGHQVAT--------------DYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFS 290
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+M A N A+ NR + R+ F+ F+ +PD+L + ++YDV+HN AK E H V+G +K
Sbjct: 291 AMKCAVNMAFANRQVILHRIREVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRK 350
Query: 237 TLLVHRKVS 245
LLVHRK S
Sbjct: 351 ELLVHRKGS 359
>gi|335438447|ref|ZP_08561191.1| hypothetical protein HLRTI_14918 [Halorhabdus tiamatea SARL4B]
gi|334892068|gb|EGM30312.1| hypothetical protein HLRTI_14918 [Halorhabdus tiamatea SARL4B]
Length = 486
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G++ + L E LE G++W+L EGY +D HCE+ G AD
Sbjct: 128 LFEAIPSGLGGGGVVQTDVDTLAEILERGVEWALEEGYAVEDDLTHCEDEGVRPGADADA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V ++Y + A + G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSKKAKDRGRQQLGSLGSGNHFLEVQRVTDVYREDVAERFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L ++EK + + D++LA A S ++Y +M A
Sbjct: 247 HQVCT--------------DYLREIEKTHEGLLEQLPDKELAAAPAGSHLAEEYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H + + + L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMELLYDVAHNIAKKETHTIGDEDRELFV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|448303010|ref|ZP_21492960.1| hypothetical protein C495_01880 [Natronorubrum sulfidifaciens JCM
14089]
gi|445594017|gb|ELY48184.1| hypothetical protein C495_01880 [Natronorubrum sulfidifaciens JCM
14089]
Length = 488
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L Y +D HCE+ G ADPSK
Sbjct: 130 LFANVPSGLGGGGIVESGVDTVDEILARGVDWALENSYAVEDDLRHCEDEGTREEADPSK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V +++ S G+E Q+ V+IH GSRG G
Sbjct: 190 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFHDEVGSAYGLEK-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEKQHQGLLNTLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ F + F+ + +D++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 295 AINFAWVNRQLIMHRTREVFERVFDQSWEDMEMDLLYDVAHNIAKKEVHDVDGEKRELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|448298691|ref|ZP_21488719.1| hypothetical protein C496_04063 [Natronorubrum tibetense GA33]
gi|445591361|gb|ELY45567.1| hypothetical protein C496_04063 [Natronorubrum tibetense GA33]
Length = 490
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 149/252 (59%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L G+ ED HCE+ G ADP K
Sbjct: 130 LFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAVEEDLLHCEDEGMREGADPEK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D + G+E+ Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGDVGTAYGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + + DR+LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEKQHQGLLDQLPDRELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
A NFAWVNR + RQ F + F+ + +++M ++YDV+HNIAK E H+VD G ++ L
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRSWQEMEMDLLYDVAHNIAKKETHVVDDEGTEREL 354
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 355 YVHRKGATRAFP 366
>gi|209364019|ref|YP_001424621.2| RtcB [Coxiella burnetii Dugway 5J108-111]
gi|207081952|gb|ABS77493.2| RtcB [Coxiella burnetii Dugway 5J108-111]
Length = 477
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 138/243 (56%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG G I + L+E L G W+++ G+ ED EE G+M A P
Sbjct: 124 LYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQMKGAIPDN 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+VD+IYDK AA G+E QV + IH GSR G
Sbjct: 184 VSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRSLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D LV + K R + DR+LACA I S EGQ YL +M A
Sbjct: 243 HQIGS--------------DYLVALAKEASRLGVTLPDRELACAPIKSAEGQRYLGAMNA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+AF K + + + +YDVSHN K EEH+++G+++ L +
Sbjct: 289 GINCALANRQLLTHLTREAFGKIIPS----VFIETLYDVSHNTCKQEEHLINGQKRRLYI 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|433590971|ref|YP_007280467.1| hypothetical protein Natpe_1666 [Natrinema pellirubrum DSM 15624]
gi|448334504|ref|ZP_21523679.1| hypothetical protein C488_13881 [Natrinema pellirubrum DSM 15624]
gi|433305751|gb|AGB31563.1| hypothetical protein Natpe_1666 [Natrinema pellirubrum DSM 15624]
gi|445619836|gb|ELY73353.1| hypothetical protein C488_13881 [Natrinema pellirubrum DSM 15624]
Length = 965
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 148/252 (58%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ +EE L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 605 LFANVPSGLGGGGIVEAGVDTVEEILARGVDWALENGHAVEDDLLHCEDEGMREGADPDK 664
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+ + Q+ V+IH GSRG G
Sbjct: 665 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGEVGEAYGLSE-DQIVVLIHCGSRGLG 723
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D +LA A S+ +DY +M A
Sbjct: 724 HQ---------TCNDY-----LRKIEQQHEGLLNQLPDTELAAAPAGSQLAEDYYAAMNA 769
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + +++DMH++YDV+HNIAK E H V DG+++ L
Sbjct: 770 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVGEDGEEREL 829
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 830 YVHRKGATRAFP 841
>gi|448330845|ref|ZP_21520121.1| hypothetical protein C489_16894 [Natrinema versiforme JCM 10478]
gi|445610681|gb|ELY64450.1| hypothetical protein C489_16894 [Natrinema versiforme JCM 10478]
Length = 488
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 147/252 (58%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G GI+ ++E L G+DW+L G+ ED HCE+ G A P K
Sbjct: 128 LFANIPSGLGGGGIVEPGIDAVDEILARGVDWALENGHAVEEDLLHCEDEGMREGAAPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDSGVGEAYGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ K + D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHKGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + + +DMH++YDV+HNIAK E H V DG ++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWESMDMHLLYDVAHNIAKKETHTVNADGDEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|288818329|ref|YP_003432677.1| hypothetical protein HTH_1018 [Hydrogenobacter thermophilus TK-6]
gi|384129089|ref|YP_005511702.1| hypothetical protein [Hydrogenobacter thermophilus TK-6]
gi|288787729|dbj|BAI69476.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6]
gi|308751926|gb|ADO45409.1| protein of unknown function UPF0027 [Hydrogenobacter thermophilus
TK-6]
Length = 480
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ +P GVGS G + ++ L+E G W++ G+ ED H E G + NADP K
Sbjct: 125 ILSKVPAGVGSTGRLKLSKEQLKEVAIKGARWAVEHGFGLEEDLLHIESSGTLANADPDK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGT+G+GNH+ E+Q VDEIYD+ A ++G+ GQ+ +M+HSGSRGFG
Sbjct: 185 VSNFAYERGSEELGTVGSGNHFVEVQTVDEIYDEQIAKRLGLGK-GQITIMVHSGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C+ Y L + A+++ IE D QLAC SKEGQDY K+M A
Sbjct: 244 HQV---------CVDY-----LKVAKDALEKYRIEIPDMQLACMPFKSKEGQDYFKAMNA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + F+ + + ++L VIYD++HNI K E++ +DGK K LL+
Sbjct: 290 AANYAFANRQILGFITADVIRRFLGISWEELGYRVIYDLAHNIGKIEKYTIDGKDKELLI 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|289448283|ref|ZP_06438027.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421241|gb|EFD18442.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length = 432
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 154/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+L +GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLVSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|448385445|ref|ZP_21563951.1| hypothetical protein C478_16372 [Haloterrigena thermotolerans DSM
11522]
gi|445656940|gb|ELZ09772.1| hypothetical protein C478_16372 [Haloterrigena thermotolerans DSM
11522]
Length = 488
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 148/252 (58%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ +EE L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 128 LFANVPSGLGGGGIVEAGVDTVEEILARGVDWALENGHAVEDDLLHCEDEGMREGADPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+ + Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGEVGEAYGLSE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D +LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHEGLLNQLPDTELAAAPAGSQLAEDYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + +++DMH++YDV+HNIAK E H V DG+++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVGEDGEEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|168700778|ref|ZP_02733055.1| hypothetical protein GobsU_14734 [Gemmata obscuriglobus UQM 2246]
Length = 487
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 140/250 (56%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G G G + + + G + + G A D +H E G + DP +
Sbjct: 130 LFYTIPSGAGRTGKYKFDTTETRRLMGEGPKFVIARGLGVARDLDHTEANGLIDGGDPHQ 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A KRG Q GTLG+GNH+ E+Q+VD ++D A G+E + Q+CVMIHSGSRG G
Sbjct: 190 VSDHAVKRGAEQCGTLGSGNHFLEVQVVDSVFDAEVAKAFGLE-LNQICVMIHSGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ DAL ++ E DRQLACA +S EG+ Y+ M A
Sbjct: 249 YQV----CD----------DALATFRNCPQKYGFELPDRQLACAPADSPEGRKYIAQMRA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+ + NR + R+ FA+ F + DDL M +YDV+HNIAK EEH V+GK+K + V
Sbjct: 295 AANYGFCNRQLLMHQAREVFAQVFGRSWDDLGMEQLYDVAHNIAKFEEHTVEGKKKKVWV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|301059995|ref|ZP_07200869.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300445874|gb|EFK09765.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length = 481
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 150/257 (58%), Gaps = 23/257 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G++ ++ + G W++++GY A D E E+ G + ADPS
Sbjct: 122 LFKGIPAGVGSTGMLRLSKSKQRDVAVRGAAWAVKQGYGTARDLEKTEDRGVLPGADPSV 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI-EDVGQVCVMIHSGSRGF 119
+S RA +RGL QLGTLG+GNH+ EIQ VD+IYD+ A + + ED Q+ + IH+GSRGF
Sbjct: 182 LSERAVRRGLNQLGTLGSGNHFLEIQRVDKIYDREKAIRFNLFED--QITIFIHTGSRGF 239
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEK--AMKRDNIETNDRQLACARINSKEGQDYLKS 177
GHQ+ C+ D L +M + A DRQLACA + S + YL +
Sbjct: 240 GHQI----CD----------DFLKEMNRKIAAGGQPFSLPDRQLACASLKSGLAKRYLAA 285
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
MA AAN+AW NR + R+ K TTPD L M ++YDV HNIAKTE H V+GK T
Sbjct: 286 MACAANYAWANRQILMHWTREILLKILATTPDALGMSLLYDVCHNIAKTESHTVNGKPVT 345
Query: 238 LLVHRKVS----EPSHP 250
L VHRK + P HP
Sbjct: 346 LCVHRKGATRALPPGHP 362
>gi|435847160|ref|YP_007309410.1| hypothetical protein Natoc_1825 [Natronococcus occultus SP4]
gi|433673428|gb|AGB37620.1| hypothetical protein Natoc_1825 [Natronococcus occultus SP4]
Length = 486
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 148/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G GI+ + +EE L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 128 LFANIPSGLGGGGIVEADIDTVEEILARGVDWALEHGHAVEDDLLHCEDEGMREGADPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D + G+E+ ++ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGAAFGLEE-DRIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ K D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHKGLLDRLPDKELAAAPAGSQLAEDYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ T ++++M ++YDV+HNIAK E H V +++ L V
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRTWEEMEMELLYDVAHNIAKKETHTVGDEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|448735093|ref|ZP_21717311.1| hypothetical protein C450_17557 [Halococcus salifodinae DSM 8989]
gi|445798962|gb|EMA49347.1| hypothetical protein C450_17557 [Halococcus salifodinae DSM 8989]
Length = 485
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 149/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ +E LE GMDW+L EGY +D HCE+ GR +ADP
Sbjct: 128 LFANIPSGLGGGGVVESGIDTVEAILERGMDWALEEGYAVEDDLAHCEDEGRRPDADPGV 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++ + A G+ + Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFREDVADAYGLTE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C Y ++E+A D++LA A S+ ++Y +M A
Sbjct: 247 HQV---------CTEYTR-----EVEQAHPGLLDRLPDKELAAAPAGSQLAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNR + R+ F + F+ + +D++M ++YDV+HNIAK E H V+G+++ L V
Sbjct: 293 AINYAWVNRQLIMHRTREVFERVFDRSWEDMEMDLLYDVAHNIAKKEIHDVEGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|292491945|ref|YP_003527384.1| hypothetical protein Nhal_1884 [Nitrosococcus halophilus Nc4]
gi|291580540|gb|ADE14997.1| protein of unknown function UPF0027 [Nitrosococcus halophilus Nc4]
Length = 476
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 142/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVGS+G I +N R++ L G W++ GY ED EE G M A P +
Sbjct: 123 LYHQIPAGVGSRGAIHLNDREMNAMLAGGARWAVERGYGRPEDLARIEEQGCMPGAVPDE 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V E+YD A+ G+ G + V IH GSRG G
Sbjct: 183 VSAKAKKRQQDEMGTLGSGNHYLEVQHVVEVYDPETAAAFGLYG-GDMVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A R I DR+LACA I+S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKDMAIAAPRYGITLPDRELACAPIHSPLGETYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L RQ FA+ + ++ ++YDVSHN K EEH++DG++K L V
Sbjct: 288 GINCALANRQILTHLTRQVFAEIL----PEANLTLLYDVSHNTCKVEEHVIDGQRKRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAYGPGHP 357
>gi|386284342|ref|ZP_10061564.1| hypothetical protein SULAR_03807 [Sulfurovum sp. AR]
gi|385344627|gb|EIF51341.1| hypothetical protein SULAR_03807 [Sulfurovum sp. AR]
Length = 478
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 142/252 (56%), Gaps = 23/252 (9%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP GVG +G + + +L++ L G W++ GY ED EE G+M A P +S
Sbjct: 129 IPAGVGREGKLRLTLDELDDVLRGGAQWAIHHGYGLGEDLSFVEEMGKMQGARPENISRL 188
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AK+R L ++GTLG+GNHY E+Q V +IYD+ AA GI+ GQ+ V IH GSR GHQ+
Sbjct: 189 AKERQLGEVGTLGSGNHYLEVQEVAKIYDEKAAEAFGIKK-GQIVVSIHCGSRALGHQIG 247
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T + LV + KA R I DR+LACA I+S EGQ+Y+ +M AA N
Sbjct: 248 T--------------EYLVSLAKAATRLGISLPDRELACAPIHSPEGQEYIGAMNAAINC 293
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A NR +T + R AF F + + +YDVSHN K E H+V+G ++ L VHRK
Sbjct: 294 AMANRQVLTHMTRNAFECLFK----GVKIETLYDVSHNTCKEETHLVNGVERNLWVHRKG 349
Query: 245 SE----PSHPGV 252
+ P HP +
Sbjct: 350 ATRAFGPGHPDI 361
>gi|212212438|ref|YP_002303374.1| RtcB [Coxiella burnetii CbuG_Q212]
gi|212010848|gb|ACJ18229.1| RtcB [Coxiella burnetii CbuG_Q212]
Length = 478
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 139/244 (56%), Gaps = 20/244 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG G I + L+E L G W+++ G+ ED EE G+M A P
Sbjct: 124 LYHRIPAGVGVGGFIKLTPSQLDEVLVDGAGWAIKRGFGIREDLSFVEENGQMKGAIPDN 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+VD+IYDK AA G+E QV + IH GSRG G
Sbjct: 184 VSELAKKRQRNEMGTLGSGNHYLEVQVVDKIYDKEAAQAYGLER-DQVLISIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D LV + K R + DR+LACA I S EGQ YL +M A
Sbjct: 243 HQIGS--------------DYLVALAKEASRLGVTLPDRELACAPIKSAEGQRYLGAMNA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK-TLL 239
N A NR +T L R+AF K + + + +YDVSHN K EEH+++G+QK L
Sbjct: 289 GINCALENRQLLTHLTREAFGKIIPS----VFIETLYDVSHNTCKQEEHLINGQQKRRLY 344
Query: 240 VHRK 243
+HRK
Sbjct: 345 IHRK 348
>gi|167577969|ref|ZP_02370843.1| hypothetical protein BthaT_07521 [Burkholderia thailandensis TXDOH]
Length = 477
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 144/256 (56%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS G + ++A ++ L G W++ +GY D E EE G + +A PS
Sbjct: 123 LFAHIPAGVGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHAKPSM 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R +LGTLG+GNHY E+Q +++IYD A + G++ GQV V IH GSRG G
Sbjct: 183 VSALAKRRQRDELGTLGSGNHYLEVQEIEDIYDPACAQRYGLQR-GQVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A K I DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKDMVIAAKSYGIALPDRELACAPILSDLGERYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ FAK + + YDVSHN K E+H++DG+++ L V
Sbjct: 288 AINCALANRQVLTHLTREVFAKVLPAA----QLTLFYDVSHNTCKVEDHVIDGRRRQLYV 343
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 344 HRKGATRAFGPGHPAL 359
>gi|291279625|ref|YP_003496460.1| hypothetical protein DEFDS_1236 [Deferribacter desulfuricans SSM1]
gi|290754327|dbj|BAI80704.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 479
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 149/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++++IP GVG G I + ++L+ L+ G W++ EGY D + E G++ A+P
Sbjct: 122 LYNNIPCGVGEGGNIKLKKKELKNVLKKGSYWAVEEGYGNENDLLNTESSGKLDEANPDI 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG QLGTLG+GNH+ E+ V+EI+ + A + G+ GQ+ ++IHSGSRG G
Sbjct: 182 VSNKAYERGYDQLGTLGSGNHFLELGYVEEIFLEDIAKEWGLFK-GQLTLLIHSGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L EKA+K+ I+ D+QLACA + S EGQ+YL +++
Sbjct: 241 HQICS--------------DFLDVFEKALKKYQIDVPDKQLACAPVLSPEGQEYLAALSC 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + L A +L+ ++YDV+HNI K E+ +DG++K L V
Sbjct: 287 AANFAWANRQILQSLAINTLADILKVKVKNLNPSLLYDVAHNIVKFEKFEIDGEEKLLAV 346
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 347 HRKGATRSLP 356
>gi|167967275|ref|ZP_02549552.1| hypothetical protein MtubH3_04247 [Mycobacterium tuberculosis
H37Ra]
Length = 432
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 153/247 (61%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA T +H++Y VSH++A E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADATGTP-----LHLLYHVSHHLANIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>gi|83717086|ref|YP_439510.1| hypothetical protein BTH_II1314 [Burkholderia thailandensis E264]
gi|257142637|ref|ZP_05590899.1| hypothetical protein BthaA_25983 [Burkholderia thailandensis E264]
gi|83650911|gb|ABC34975.1| Uncharacterized conserved protein [Burkholderia thailandensis E264]
Length = 477
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 144/256 (56%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP G+GS G + ++A ++ L G W++ +GY D E EE G + +A PS
Sbjct: 123 LFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHAKPSM 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R +LGTLG+GNHY E+Q +++IYD A + G++ GQV V IH GSRG G
Sbjct: 183 VSALAKRRQRDELGTLGSGNHYLEVQEIEDIYDPACAQRYGLQR-GQVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A K I DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKAMVIAAKSYGIALPDRELACAPILSDLGERYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ FAK + + YDVSHN K E+H++DG+++ L V
Sbjct: 288 AINCALANRQVLTHLTREVFAKVLPAA----QLTLFYDVSHNTCKVEDHVIDGRRRQLYV 343
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 344 HRKGATRAFGPGHPAL 359
>gi|429192588|ref|YP_007178266.1| hypothetical protein Natgr_2668 [Natronobacterium gregoryi SP2]
gi|448326501|ref|ZP_21515855.1| hypothetical protein C490_13875 [Natronobacterium gregoryi SP2]
gi|429136806|gb|AFZ73817.1| hypothetical protein Natgr_2668 [Natronobacterium gregoryi SP2]
gi|445611501|gb|ELY65251.1| hypothetical protein C490_13875 [Natronobacterium gregoryi SP2]
Length = 488
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 149/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E LE G++W++ G+ D HCE+ G AD +K
Sbjct: 130 LFANVPSGLGGGGIVEAGVDTVDEILERGVEWAVENGHGVEGDLLHCEDEGHREEADATK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V E++D+ G+E+ Q+ V+IH GSRG G
Sbjct: 190 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTEVFDEGVGEAYGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ DY K+M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAGDYYKAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ ++++M ++YDV+HNIAK E H VDG+Q+ L V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRPWEEMEMELLYDVAHNIAKKEVHDVDGEQRELFV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|350561326|ref|ZP_08930165.1| protein of unknown function UPF0027 [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781433|gb|EGZ35741.1| protein of unknown function UPF0027 [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 476
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 145/254 (57%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS G I + + + + L G W++ + ED E EE G+M ADP
Sbjct: 123 LFAGIPAGLGSTGQIHLRDQQMTDMLRGGAAWAVERSFGQPEDLERIEERGQMAGADPEA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KR ++GTLG+GNHY E+Q + ++D A+ G+ + GQV V IH GSRG G
Sbjct: 183 VSQQARKRQRNEMGTLGSGNHYLEVQHITRVFDPDVAAAFGLAE-GQVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A + I+ DR+LACA I+S+ GQ YL +M A
Sbjct: 242 HQIGT--------------EFLREMAIAAQGHGIDLPDRELACAPIHSEIGQRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ FA+ D ++ ++YDVSHN KTE H+VDG+ + L V
Sbjct: 288 AINCALANRQILTHLAREVFAEVL----PDANLRLLYDVSHNTCKTERHVVDGRDRELYV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAFGPGHP 357
>gi|167616092|ref|ZP_02384727.1| hypothetical protein BthaB_07346 [Burkholderia thailandensis Bt4]
Length = 406
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 144/256 (56%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP G+GS G + ++A ++ L G W++ +GY D E EE G + +A PS
Sbjct: 123 LFAHIPAGIGSTGRLRLSAAKTDDMLTGGAVWAVEQGYGTPSDLERIEEGGMVRHAKPSM 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R +LGTLG+GNHY E+Q +++IYD A + G++ GQV V IH GSRG G
Sbjct: 183 VSALAKRRQRDELGTLGSGNHYLEVQEIEDIYDPACAQRYGLQR-GQVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A K I DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKAMVIAAKSYGIALPDRELACAPILSDLGERYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ FAK + + YDVSHN K E+H++DG+++ L V
Sbjct: 288 AINCALANRQVLTHLTREVFAKVLPAA----QLTLFYDVSHNTCKVEDHVIDGRRRQLYV 343
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 344 HRKGATRAFGPGHPAL 359
>gi|226946626|ref|YP_002801699.1| hypothetical protein Avin_46150 [Azotobacter vinelandii DJ]
gi|226721553|gb|ACO80724.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 476
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 143/243 (58%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP G+GS G + ++AR+++ L G W++ G+ D EE GRM ADP+
Sbjct: 123 LYRRIPAGLGSTGALRLSAREMDAMLLGGARWAVEAGFGDEADLARIEESGRMAGADPAA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q+VDE++D AA G+ + G V IH GSRG G
Sbjct: 183 VSEQAKKRQRDEMGTLGSGNHYLEVQVVDELFDIRAARAYGLSE-GDVLATIHCGSRGMG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M A R I DR+LACA ++S+ G+ YL +M A
Sbjct: 242 HQIGT--------------DYLRAMVIAAARAGIALPDRELACAPLDSELGRRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L RQAFA+ F + + ++YDVSHN K E H++ G+++ L V
Sbjct: 288 AINCALANRQILTRLTRQAFAELF----PGIRLPLLYDVSHNTCKEEWHVLGGQRRRLFV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|239907182|ref|YP_002953923.1| hypothetical protein DMR_25460 [Desulfovibrio magneticus RS-1]
gi|239797048|dbj|BAH76037.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 474
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 136/243 (55%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ +D++ L G W++ +GY A D HCEE G M ADP +
Sbjct: 121 LFARVPCGVGQGGALRLSDKDMDRMLRHGAAWAVGQGYGEAADLAHCEEGGTMAGADPGQ 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R +LG+LG+GNHY E+Q V++I D+ +A G+ GQV V IH GSRG G
Sbjct: 181 VSATAKERQRDELGSLGSGNHYLEVQWVEDILDRASADAYGLRP-GQVVVSIHCGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +A +I D LACA + S EGQ YL +M A
Sbjct: 240 HQVAT--------------DHMAAMRRAAPGHDIVLPDPDLACAPVASAEGQAYLGAMRA 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A R +T L R+ FA F + +++DVSHN K E H G+ +TL V
Sbjct: 286 AVNCALAGRQVITHLVREVFAGLFPGC----RLPLLFDVSHNTCKAERHGAGGRPRTLYV 341
Query: 241 HRK 243
HRK
Sbjct: 342 HRK 344
>gi|383621929|ref|ZP_09948335.1| hypothetical protein HlacAJ_11331 [Halobiforma lacisalsi AJ5]
gi|448702855|ref|ZP_21700212.1| hypothetical protein C445_19767 [Halobiforma lacisalsi AJ5]
gi|445776948|gb|EMA27924.1| hypothetical protein C445_19767 [Halobiforma lacisalsi AJ5]
Length = 503
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 152/265 (57%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ +EE LE G+DW+L G+ ED HCE+ G AD SK
Sbjct: 130 LFANVPSGLGGGGIVKAGVDTVEEILERGVDWALENGHAVEEDLLHCEDEGVRTEADASK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 190 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDAVGDAYGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY K+M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYKAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + RQ F + F+ + +++DMH++YDV+HNIAK E H V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHAVGVGPEGRPV 354
Query: 232 -DG-----KQKTLLVHRKVSEPSHP 250
DG +++ L VHRK + + P
Sbjct: 355 RDGDAVEHEERELYVHRKGATRAFP 379
>gi|74318377|ref|YP_316117.1| hypothetical protein Tbd_2359 [Thiobacillus denitrificans ATCC
25259]
gi|74057872|gb|AAZ98312.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 476
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 142/256 (55%), Gaps = 23/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G + +N+ D++ L G W++ GY D E EE G + A P
Sbjct: 123 LFASIPAGVGSSGKLRLNSVDMDAMLRGGACWAVERGYGSPADLERIEERGCVAGAAPEH 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R +LGTLG+GNHY E+Q V +IYD AA + + VG++ V IH GSRG G
Sbjct: 183 VSEAAKRRQRDELGTLGSGNHYLELQEVTQIYDVPAADRFRLR-VGELVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A I+ DR+LACA I+S GQ YL +M A
Sbjct: 242 HQIGT--------------EFLKAMVLAAPAHGIDLPDRELACAPIDSALGQSYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L RQ FA + PD + ++YDVSHN K E + VDGK K L V
Sbjct: 288 ATNCALANREVITHLVRQVFA---DVVPDS-HLALVYDVSHNTCKQESYTVDGKAKRLYV 343
Query: 241 HRKVSE----PSHPGV 252
HRK + P HPG+
Sbjct: 344 HRKGATRAFGPGHPGL 359
>gi|336322806|ref|YP_004602773.1| hypothetical protein Flexsi_0518 [Flexistipes sinusarabici DSM
4947]
gi|336106387|gb|AEI14205.1| protein of unknown function UPF0027 [Flexistipes sinusarabici DSM
4947]
Length = 478
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVG G I ++ +++++ L+ G W++ GY D + E +G + ADPS+
Sbjct: 121 LYKKIPCGVGEGGNIKLSNKEMKKLLQEGSKWAVNSGYGNESDLYNTESFGCLSEADPSQ 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA +RG Q GTLG+GNH+ EI VD+I+DK A+ G+E+ G++ +MIHSGSRG G
Sbjct: 181 VSKRAMERGSDQCGTLGSGNHFLEIGSVDKIFDKKTANFWGLEE-GKLTLMIHSGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L E+ +++ I D+QL+CA ++S E + Y +MA
Sbjct: 240 HQICT--------------DFLKVFERTLEKYKISVPDKQLSCAPVDSDESRKYFSAMAC 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR + L A A F ++L+ +IYDV+HNI K E + K + V
Sbjct: 286 AANFAWANRQILMNLAVSAVADYFKVKAENLNYRLIYDVAHNIVKKEFFDLKSKNCEIYV 345
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 346 HRKGATRALP 355
>gi|448340549|ref|ZP_21529520.1| hypothetical protein C486_02768 [Natrinema gari JCM 14663]
gi|445629982|gb|ELY83252.1| hypothetical protein C486_02768 [Natrinema gari JCM 14663]
Length = 488
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 148/252 (58%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L GY A+D HCE+ G A P K
Sbjct: 128 LFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGYAVADDLRHCEDEGMREGAAPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDADVGEAFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAADYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + ++++M ++YDV+HNIAK E H V DG+++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMEMDLLYDVAHNIAKKETHTVGADGEEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|397772864|ref|YP_006540410.1| hypothetical protein NJ7G_1087 [Natrinema sp. J7-2]
gi|397681957|gb|AFO56334.1| hypothetical protein NJ7G_1087 [Natrinema sp. J7-2]
Length = 488
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 148/252 (58%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L GY A+D HCE+ G A P K
Sbjct: 128 LFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGYAVADDLRHCEDEGMREGAAPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDADVGEAFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAADYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + ++++M ++YDV+HNIAK E H V DG+++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMEMDLLYDVAHNIAKKETHTVGADGEEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|428200816|ref|YP_007079405.1| hypothetical protein Ple7327_0388 [Pleurocapsa sp. PCC 7327]
gi|427978248|gb|AFY75848.1| hypothetical protein Ple7327_0388 [Pleurocapsa sp. PCC 7327]
Length = 483
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 148/243 (60%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ + P GVG KG IP+ +L+ G W+L GY ED EE+G + ADPSK
Sbjct: 126 LYRNCPSGVGEKGSIPLTTEELDNVCRKGARWALEHGYALEEDLPRTEEFGCLEGADPSK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
S RAK+RG QLGTLGAGNH+ E+ +++EIYD+ AA MG+ G + + IH GSRGFG
Sbjct: 186 ASKRAKERGRGQLGTLGAGNHFLEVDVIEEIYDREAAEIMGLHK-GCLALQIHCGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D + + A+ I+ DR+L CA I+S EGQ YL +M A
Sbjct: 245 HQICT--------------DYVQDFQWAVINYGIQLPDRELVCAPIDSTEGQAYLAAMKA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR ++ + R++F + F + + + +YD++HN+AK E+H ++GK T+ V
Sbjct: 291 AANYAFANRQTLAYHARRSFKEIFGSQAGENPLRQVYDIAHNMAKIEKHRIEGKDMTVCV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|300710830|ref|YP_003736644.1| hypothetical protein HacjB3_07335 [Halalkalicoccus jeotgali B3]
gi|448295160|ref|ZP_21485233.1| hypothetical protein C497_05742 [Halalkalicoccus jeotgali B3]
gi|299124513|gb|ADJ14852.1| hypothetical protein HacjB3_07335 [Halalkalicoccus jeotgali B3]
gi|445585130|gb|ELY39434.1| hypothetical protein C497_05742 [Halalkalicoccus jeotgali B3]
Length = 486
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G G++ +E L+ GM+W+L EGY D +HCE+ G ++DP+
Sbjct: 128 LFANVPSGLGGGGVVESGIDTVEAILDRGMEWALEEGYAVPADLDHCEDEGVREDSDPAA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++ + A G+ + ++ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFREDVAEAYGLAE-DRIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L ++EK E D++LA A S+ ++Y +M A
Sbjct: 247 HQVCT--------------DYLRKIEKRHGDLLAELPDKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR +T R F + F +++ M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 293 AINFAWVNRQLITHRTRAVFERVFGRDHEEMGMELLYDVAHNIAKKEVHEVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|123392138|ref|XP_001300198.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881197|gb|EAX87268.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 285
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 144/243 (59%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++++IPVGVG K + L + + G W+L G+ ED ++CEE G + ADPS
Sbjct: 21 LYEYIPVGVGGKLDGVCDRDHLRDVMLKGAGWALENGFAVQEDIDNCEENGCLKGADPSL 80
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S R RG QLGT+GAGNHY E+Q VD+I D+ A M + + GQV VMIH+GSRG G
Sbjct: 81 ISDRTIARGKGQLGTVGAGNHYIEVQRVDKILDEEKARVMDLHE-GQVVVMIHTGSRGLG 139
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA + V EK +K D+QLA +S+EGQ YL++M A
Sbjct: 140 HQVAD-------------ENMKVCSEKFVKES---LPDKQLAAPSFHSEEGQKYLRAMYA 183
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANF W NR + R+AF+ F L+ H++YDV+HNIAK E+H +DG +K +V
Sbjct: 184 AANFVWCNRQVIMHNVRRAFSDVFKDRK--LETHLVYDVAHNIAKVEKHNIDGVEKEYIV 241
Query: 241 HRK 243
HRK
Sbjct: 242 HRK 244
>gi|448346286|ref|ZP_21535172.1| hypothetical protein C485_10874 [Natrinema altunense JCM 12890]
gi|445632875|gb|ELY86081.1| hypothetical protein C485_10874 [Natrinema altunense JCM 12890]
Length = 488
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 149/252 (59%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 128 LFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGADPDK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDSDVGEAFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + ++++M ++YDV+HNIAK E H V DG+++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMEMELLYDVAHNIAKKETHTVGADGEEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|89902611|ref|YP_525082.1| hypothetical protein Rfer_3852 [Rhodoferax ferrireducens T118]
gi|89347348|gb|ABD71551.1| protein of unknown function UPF0027 [Rhodoferax ferrireducens T118]
Length = 476
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 142/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP GVGS G I +N+ ++ L G W++ G+ D E EE+G+ML+A P
Sbjct: 123 LFERIPAGVGSTGAIRLNSAQMDAMLSGGAKWAVERGWGSNADLERVEEHGQMLHAKPKF 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V ++D AS G+ G + +MIH GSRG G
Sbjct: 183 VSEQAKKRQREEMGTLGSGNHYLEVQEVTAVFDAAIASAYGLHQ-GDIVLMIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M +A I DR+LACA I S GQ+YL +M A
Sbjct: 242 HQIGT--------------EFLRKMVEAAPGYGIILPDRELACAPIRSDLGQEYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R FAK + + V+YDVSHN K E H VDG+ + L V
Sbjct: 288 AINCALANRQILTQLVRDVFAKLLPSA----QLPVLYDVSHNTCKLETHKVDGQPRELYV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAWGPGHP 357
>gi|396080817|gb|AFN82438.1| RtcB-like protein [Encephalitozoon romaleae SJ-2008]
Length = 477
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 144/250 (57%), Gaps = 26/250 (10%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS ++ L+ L+ G+D+ L+ I ED E+CE GRM D
Sbjct: 131 LFGIIPTGMGSDKRSNVDLGALDSILDQGLDYLLKLKEIPDEDAEYCESNGRM-TGDSRL 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V +AK RGL QLGTLG+GNHY E+Q VDE+YD A MGI Q+ +MIHSGSRG G
Sbjct: 190 VGQKAKGRGLNQLGTLGSGNHYLEVQYVDEVYDTEKAEVMGIRK-KQIVLMIHSGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
H++ D+L++M + + T QLAC+ NSKE Q+YL SM
Sbjct: 249 HRICH--------------DSLMRMAR------MSTGYGQLACSPYNSKESQEYLLSMGC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR+ +T RQAF + F DL IYDV HNIAK E H ++G + +V
Sbjct: 289 AANFAFVNRAMITKKARQAFERVFPEARLDL----IYDVCHNIAKIESHKINGMEYDAIV 344
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 345 HRKGASRAFP 354
>gi|223937547|ref|ZP_03629450.1| protein of unknown function UPF0027 [bacterium Ellin514]
gi|223893710|gb|EEF60168.1| protein of unknown function UPF0027 [bacterium Ellin514]
Length = 483
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 142/257 (55%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS GI+ + + +E G W + GY ED EE G + AD K
Sbjct: 123 LFKEVPAGVGSAGILKLTREEFRRVIEEGARWCVANGYGCEEDLALTEEQGCIDGADALK 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS RA RGL Q+GTLG+GNHY E+Q+ + ++D+ A GI QV VM H GSRG
Sbjct: 183 VSERAIDRGLNQIGTLGSGNHYLEVQVARKENVFDQELAHAFGITAPDQVVVMFHCGSRG 242
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMK-RDNIETNDRQLACARINSKEGQDYLKS 177
FGHQVAT D L + M+ + I+ DR+LACA NS EGQ+Y +
Sbjct: 243 FGHQVAT--------------DYLQIFLRVMENKYRIKILDRELACAPFNSPEGQNYFAA 288
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M N ++ NR + R+ F+ F + +DL + ++YDV+HN AK E H V +++
Sbjct: 289 MKCGINMSFANRQVILHHIRKVFSTIFQRSAEDLGLRMVYDVAHNTAKLERHRVGNQERM 348
Query: 238 LLVHRK-VSEPSHPGVS 253
LLVHRK + PG++
Sbjct: 349 LLVHRKGATRAFAPGMA 365
>gi|257076499|ref|ZP_05570860.1| RtcB protein [Ferroplasma acidarmanus fer1]
Length = 475
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 16/246 (6%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
+P G+ K ++ D E L G++W+ GY ED E EE G+ML +D S VS +
Sbjct: 125 VPAGIDYKSSFRISIDDENEILSSGIEWAYNNGYATREDIERTEENGKML-SDISGVSEK 183
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A KRG +LGTLGAGNH+ E+ ++ I D+ A K GI + + +M+H+GSRG GHQVA
Sbjct: 184 AIKRGKNELGTLGAGNHFLEMDRIESIMDEAKAKKFGINNKNNLAIMVHTGSRGLGHQVA 243
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T ++ D+ ++ E +DRQL A I+S+ GQDYL +M AAANF
Sbjct: 244 TDYLMRLNE-----EDSSIKSE----------DDRQLISAYIHSRTGQDYLNAMNAAANF 288
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
+VNR +T+ R+AF K F + L + +Y ++HN+AK E H VDG ++ L+VHRK
Sbjct: 289 GFVNRQIITYKIRKAFEKIFGEDFEHLGIETLYSLAHNMAKAEIHNVDGNKRKLMVHRKG 348
Query: 245 SEPSHP 250
+ + P
Sbjct: 349 ATRALP 354
>gi|371910545|dbj|BAL44360.1| hypothetical conserved protein [uncultured bacterium]
gi|374853656|dbj|BAL56558.1| hypothetical conserved protein [uncultured Chloroflexi bacterium]
Length = 483
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 159/255 (62%), Gaps = 20/255 (7%)
Query: 3 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++ P GVGS+G++ ++ +L++ L G W+L++GY D E EE+G + ADP+KVS
Sbjct: 127 EYCPSGVGSEGVVKVSTAELDQVLREGARWALKKGYASEADLERTEEFGMVEGADPAKVS 186
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
RA++RG Q+G+LGAGNH+ E+ +V++++D AA+ MG+++ G + V IH GSRG GHQ
Sbjct: 187 ERARQRGREQIGSLGAGNHFIEVDVVEQVFDPQAAAVMGLQE-GCLAVQIHCGSRGLGHQ 245
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
V T D + + A+KR I+ DR+L CA ++S EGQDYLK+M AAA
Sbjct: 246 VCT--------------DYVQAFQHAVKRYGIQLPDRELVCAPMDSPEGQDYLKAMRAAA 291
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNT-TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
NFA+ NR + + R+AF + F + +YD++HN+ K E H VDG++ + VH
Sbjct: 292 NFAFANRQLLAYSARRAFEETFAPHFKKGWQLVQVYDIAHNMGKIETHEVDGRKVKVCVH 351
Query: 242 RKVSE----PSHPGV 252
RK + P PG+
Sbjct: 352 RKGATRAFGPGAPGL 366
>gi|154151333|ref|YP_001404951.1| hypothetical protein Mboo_1792 [Methanoregula boonei 6A8]
gi|153999885|gb|ABS56308.1| protein of unknown function UPF0027 [Methanoregula boonei 6A8]
Length = 477
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 144/243 (59%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVG+K + L + G W++ GY D CEE G M +AD
Sbjct: 122 LYRAVPTGVGAKSTAKIPKEALLSMMVKGARWAVETGYGTTRDLTRCEEGGAMNDADIRA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG+PQ GTLG+GNH+ E+Q V EIYD+ AA+ G++ +GQVC MIH GSRG G
Sbjct: 182 VSEKARARGIPQGGTLGSGNHFLELQEVSEIYDEKAAAAFGVK-MGQVCCMIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +E A KR NI DRQLACA S EGQ Y +MAA
Sbjct: 241 HQVCT--------------DHLKVLETATKRYNIALPDRQLACAPAGSPEGQAYYGAMAA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+ F + F D M ++YDV+HN+AK EEH V+G++ LLV
Sbjct: 287 AANYAWANRQMILHAARKEFVRMFGM--DYESMPLVYDVAHNVAKIEEHTVEGRRARLLV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|224826900|ref|ZP_03699999.1| protein of unknown function UPF0027 [Pseudogulbenkiania
ferrooxidans 2002]
gi|224600887|gb|EEG07071.1| protein of unknown function UPF0027 [Pseudogulbenkiania
ferrooxidans 2002]
Length = 477
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 143/243 (58%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG +G + + R+LE+ + G W++ +G+ A+D + EE G + A+P
Sbjct: 124 LFREIPAGVGEEGRLRLAVRELEQVMRQGAHWAVAQGFGPADDLPYIEERGCVGGAEPGW 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR L ++GTLG+GNHY E+Q+VD I+D+ AA+ G+ VGQV V IH GSRG G
Sbjct: 184 VSDLAKKRQLGEMGTLGSGNHYLEVQVVDRIHDEAAAAAFGLR-VGQVLVSIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L+ + K+ + DR+LACA I S+ GQ YL +M +
Sbjct: 243 HQIGT--------------DYLLLLAKSAASLGLTLPDRELACAPIRSEAGQHYLGAMNS 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR + L R A+ + + D ++DVSHN K E H V+G+++TL V
Sbjct: 289 AINCALANRQILAALTRGVLARYWPSARLD----TLFDVSHNTCKVERHRVEGRERTLYV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|289164059|ref|YP_003454197.1| hypothetical protein LLO_0715 [Legionella longbeachae NSW150]
gi|288857232|emb|CBJ11057.1| putative unknown proteins [Legionella longbeachae NSW150]
Length = 476
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 140/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGSK I + + +++ L G W++++GY ED EH E+YGR+ A P
Sbjct: 123 LFTHIPAGVGSKSRINLTMKQMDDMLRGGAVWAVKQGYGDKEDLEHIEDYGRVDGALPEH 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY EIQ V +IY A+ G+ +G V V IH GSRG G
Sbjct: 183 VSEHAKKRQKNEMGTLGSGNHYLEIQEVKKIYCDKTAAAFGLA-LGDVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M ++ I+ DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------DFLRSMLIDAQQRGIQLIDRELACAPIRSPMGERYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R+ F + T + +IYDVSHN K E H +DGK K L V
Sbjct: 288 GINCALANREIITHFMREVFQDELPGT----KIKLIYDVSHNTCKEETHQIDGKSKRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAFGPGHP 357
>gi|270157560|ref|ZP_06186217.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|269989585|gb|EEZ95839.1| conserved hypothetical protein [Legionella longbeachae D-4968]
Length = 487
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 140/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGSK I + + +++ L G W++++GY ED EH E+YGR+ A P
Sbjct: 134 LFTHIPAGVGSKSRINLTMKQMDDMLRGGAVWAVKQGYGDKEDLEHIEDYGRVDGALPEH 193
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY EIQ V +IY A+ G+ +G V V IH GSRG G
Sbjct: 194 VSEHAKKRQKNEMGTLGSGNHYLEIQEVKKIYCDKTAAAFGLA-LGDVVVSIHCGSRGLG 252
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M ++ I+ DR+LACA I S G+ YL +M A
Sbjct: 253 HQIGT--------------DFLRSMLIDAQQRGIQLIDRELACAPIRSPMGERYLGAMRA 298
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R+ F + T + +IYDVSHN K E H +DGK K L V
Sbjct: 299 GINCALANREIITHFMREVFQDELPGT----KIKLIYDVSHNTCKEETHQIDGKSKRLFV 354
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 355 HRKGATRAFGPGHP 368
>gi|347539173|ref|YP_004846598.1| hypothetical protein NH8B_1362 [Pseudogulbenkiania sp. NH8B]
gi|345642351|dbj|BAK76184.1| protein of unknown function [Pseudogulbenkiania sp. NH8B]
Length = 477
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 144/243 (59%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG +G + ++ R+L++ + G W++ +G+ A+D + EE G + A+P
Sbjct: 124 LFREIPAGVGEEGRLRLSVRELDQVMRQGAHWAVAQGFGPADDLPYIEERGCVGGAEPGW 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR L ++GTLG+GNHY E+Q+VD I+D+ AA G+ VGQV V IH GSRG G
Sbjct: 184 VSDLAKKRQLGEMGTLGSGNHYLEVQVVDRIHDEAAAVAFGLR-VGQVLVSIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L+ + K+ + DR+LACA I S+ GQ YL +M +
Sbjct: 243 HQIGT--------------DYLLLLAKSAASLGLTLPDRELACAPIRSEAGQHYLGAMNS 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR + L R+ A+ + + D ++DVSHN K E H V+G+++TL V
Sbjct: 289 AINCALANRQILAALTRRVLARYWPSARLD----TLFDVSHNTCKVERHRVEGRERTLYV 344
Query: 241 HRK 243
HRK
Sbjct: 345 HRK 347
>gi|402696899|gb|AFQ90638.1| chromosome 22 open reading frame 28, partial [Draco beccarii]
Length = 222
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 101/144 (70%), Gaps = 14/144 (9%)
Query: 16 PMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGT 75
PMNA+DL EALEM + WSL GY WAEDK HCEEYGRML ADP+K S RAKKRGLPQLGT
Sbjct: 93 PMNAKDLXEALEMXVXWSLXXGYAWAEDKXHCEEYGRMLQADPNKXSARAKKRGLPQLGT 152
Query: 76 LGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMA 135
LG HY IQ+VD+IY++ AA K I+ QVCVMIHS SRG GHQVAT
Sbjct: 153 LGXXXHYXXIQVVDDIYNEXAARKXXIDHXXQVCVMIHSDSRGLGHQVAT---------- 202
Query: 136 YVFPDALVQMEKAMKRDNIETNDR 159
DAL MEKAMKRD I NDR
Sbjct: 203 ----DALXAMEKAMKRDKIIVNDR 222
>gi|448579498|ref|ZP_21644623.1| rtcB-like protein [Haloferax larsenii JCM 13917]
gi|445723204|gb|ELZ74849.1| rtcB-like protein [Haloferax larsenii JCM 13917]
Length = 474
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 142/250 (56%), Gaps = 20/250 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G G+ + + D+ LE G++W L EG+ D EHCEE GR DP+
Sbjct: 122 LFQTIPTGFGAGSYLDTDIADVRGILETGVEWLLNEGHARKADLEHCEENGRH-PGDPNA 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V A KRG+ Q+G+LG+GNH+ E+Q V E+YD AA+ GI D+ ++ VMIH+GSRG G
Sbjct: 181 VPTEALKRGVDQVGSLGSGNHFLEVQRVSEVYDSAAAAAFGI-DLDEIVVMIHAGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ + E+A + QL A ++ + +Y +M A
Sbjct: 240 HQ---------TCSHYI-----DEFERAYPDLAESLPNEQLVYAPVSDRLAGEYRSAMNA 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +MT R+ F+ F +D D+ ++YD+ HNIA E H V ++TLLV
Sbjct: 286 AANFAWGNRQAMTQAVREVFSDLF----EDADVQLVYDLGHNIATEEHHAVGDDEQTLLV 341
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 342 HRKGASRAFP 351
>gi|114320881|ref|YP_742564.1| hypothetical protein Mlg_1728 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227275|gb|ABI57074.1| protein of unknown function UPF0027 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 475
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 135/243 (55%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ IP GVGS I + R+++ L G W++ +G+ AED EE GRM ADP
Sbjct: 123 LMSSIPAGVGSHSGITLQGREMDAMLRGGAAWAVEKGWGGAEDLARIEERGRMEGADPDC 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKR ++GTLG+GNHY E+Q V+ +YD A+ +G+ + G V V IH GSRG G
Sbjct: 183 VSERAKKRQRREMGTLGSGNHYLEVQAVETLYDPDTAAVLGLAE-GDVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A I DR+LACA I+S G+ YL +M +
Sbjct: 242 HQIGT--------------EFLRDMLPAAAEAGIHLPDRELACAPIHSPIGERYLGAMRS 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR + R+ FA+ F P DL +YDVSHN K E H VDG+ + L V
Sbjct: 288 AINCALANRQILGEFAREVFARFFPDHPLDL----LYDVSHNTCKVETHTVDGRPRRLFV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|147677917|ref|YP_001212132.1| hypothetical protein PTH_1582 [Pelotomaculum thermopropionicum SI]
gi|146274014|dbj|BAF59763.1| uncharacterized conserved protein [Pelotomaculum thermopropionicum
SI]
Length = 476
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 144/254 (56%), Gaps = 24/254 (9%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
+++P GVG KG + EE + G ++ GY ED EE G + AD V
Sbjct: 125 EYVPTGVGKKGKHKAITGEIFEEVVHTGSRGIVKRGYGRPEDLGRTEEEGCLSGADLGAV 184
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
S A KRG QLGTLG GNH+ E+Q+V+E+YD A G+E G + VMIH+GSRGFGH
Sbjct: 185 SGEAYKRGAVQLGTLGGGNHFIELQVVEEVYDPAAGKLFGLEP-GVLTVMIHTGSRGFGH 243
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
Q+ C+ Y + A ++ IE DR LACA +SKEG+DY +MA A
Sbjct: 244 QI---------CVDYS-----KSLLPAARKYGIELPDRGLACAPADSKEGRDYYAAMACA 289
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
NFA+ NR +T R AF F +P++L + +IYDV+HNIAK E H G +K +LVH
Sbjct: 290 VNFAFANRQLITHDVRCAFGDIFGCSPEELGLDLIYDVAHNIAKWEVH---GGRK-VLVH 345
Query: 242 RKVSE----PSHPG 251
RK + P HPG
Sbjct: 346 RKGATRALPPGHPG 359
>gi|154249368|ref|YP_001410193.1| hypothetical protein Fnod_0681 [Fervidobacterium nodosum Rt17-B1]
gi|154153304|gb|ABS60536.1| protein of unknown function UPF0027 [Fervidobacterium nodosum
Rt17-B1]
Length = 472
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 20/243 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +PVGVG + + D + + G ++ G+ + ED E E+YG + N D S
Sbjct: 120 IYESVPVGVGETSELNFSKNDFKRIVTNGAKEVIKMGFGYDEDLERIEDYGHIQNCDFSD 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A KRG +LGTLGAGNH+ EIQ+V+E+YD+ A G+ G + ++IH+GSRGFG
Sbjct: 180 VSEEAIKRGKDELGTLGAGNHFIEIQVVEEVYDEKIAKVFGLGK-GDITILIHTGSRGFG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M +K N D+QL A NSK GQ Y +M
Sbjct: 239 HQIAT--------------DYIKIMRDNLKEHNKNLPDKQLINAPFNSKWGQMYYSAMNC 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR +T L R+ F + LD+ ++YDV+HNIAK EE+ +DGK++ ++V
Sbjct: 285 AANYAFANRQIITHLIRKVF-----KSVAGLDVKLVYDVAHNIAKIEEYEIDGKKRKVIV 339
Query: 241 HRK 243
HRK
Sbjct: 340 HRK 342
>gi|452207430|ref|YP_007487552.1| 3'-5' RNA ligase [Natronomonas moolapensis 8.8.11]
gi|452083530|emb|CCQ36841.1| 3'-5' RNA ligase [Natronomonas moolapensis 8.8.11]
Length = 485
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNH 81
LE ALE G++W L GY D EHCE+ G +ADP V RAK RG Q+G+LG+GNH
Sbjct: 149 LESALERGVEWCLEAGYAVESDLEHCEDNGVRRDADPEAVPQRAKDRGQNQMGSLGSGNH 208
Query: 82 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDA 141
+ E+Q V E++D A G+E QV V+IH GSRG GHQ+ T +I DA
Sbjct: 209 FLEVQRVAEVFDPETAEAYGLE-ADQVVVLIHCGSRGLGHQLCTEYLRRIETTHSGLVDA 267
Query: 142 LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFA 201
L D++LA A S+ ++Y +M AA NFAWVNR +T R FA
Sbjct: 268 L--------------PDKELAAAPAGSQLAEEYYGAMCAATNFAWVNRQLITHRTRTVFA 313
Query: 202 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
F ++L M ++YDV+HNIAK E H VDG+ + L VHRK + + P
Sbjct: 314 DVFGEPWEELGMELLYDVAHNIAKKEVHDVDGEDRELYVHRKGATRAFP 362
>gi|14325584|dbj|BAB60487.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 469
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P G+ S+ P+N DL+E L G+ W++ G D + E+ G + + +
Sbjct: 123 IFQEVPSGLTSRKGFPVNQNDLQEILTSGLKWAVSRGLATELDMINTEDNGS-IESHGTH 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RGL Q+GTLGAGNH+ EIQ V +I+D+ A K G+ +V VMIH+GSRG G
Sbjct: 182 VSKQAMQRGLSQIGTLGAGNHFLEIQRVSDIFDEDVARKFGLYK-DEVTVMIHTGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L ++ ++ R++I+T+D +L + SK G++YL +M +
Sbjct: 241 HQVAT--------------DYLRELRES--RESIKTSDPELISIHVKSKIGENYLDAMKS 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR + R+ F K F+ P+ ++Y ++HNIAK E+H+V+GK K+L+V
Sbjct: 285 AANFAFVNRQMAIYGVRKVFKKFFDVEPE-----LVYSLAHNIAKVEDHIVEGKTKSLIV 339
Query: 241 HRK 243
HRK
Sbjct: 340 HRK 342
>gi|451981763|ref|ZP_21930109.1| conserved hypothetical protein UPF0027 [Nitrospina gracilis 3/211]
gi|451761029|emb|CCQ91374.1| conserved hypothetical protein UPF0027 [Nitrospina gracilis 3/211]
Length = 476
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 147/253 (58%), Gaps = 20/253 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +IP GVGS+G I +N +++ LE G W++ G+ +ED + EE G M AD
Sbjct: 123 LYANIPAGVGSRGAISLNHDEMDAMLEGGAQWAVGRGWGRSEDLKSIEEEGCMEGADAKC 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V ++YD AA G+ + G + + IH GSRG G
Sbjct: 183 VSPQAKKRQKDEMGTLGSGNHYLELQEVTDVYDAEAAGAFGLRE-GDIVISIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T E + MA P + I+ DR+LACA I S+ GQ YL +M +
Sbjct: 242 HQIGT---EFLKSMAMAAP-----------KHGIKLPDRELACAPIKSELGQQYLGAMRS 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L R+ F + DL +YDVSHN K E+H++DGK KT+ V
Sbjct: 288 AMNCAMANRQIITHLVRETFERVLPKAELDL----LYDVSHNTCKMEQHVIDGKTKTVFV 343
Query: 241 HRKVSEPSH-PGV 252
HRK + S PG+
Sbjct: 344 HRKGATRSFGPGL 356
>gi|13542153|ref|NP_111841.1| hypothetical protein TVN1322 [Thermoplasma volcanium GSS1]
Length = 466
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P G+ S+ P+N DL+E L G+ W++ G D + E+ G + + +
Sbjct: 120 IFQEVPSGLTSRKGFPVNQNDLQEILTSGLKWAVSRGLATELDMINTEDNGS-IESHGTH 178
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RGL Q+GTLGAGNH+ EIQ V +I+D+ A K G+ +V VMIH+GSRG G
Sbjct: 179 VSKQAMQRGLSQIGTLGAGNHFLEIQRVSDIFDEDVARKFGLYK-DEVTVMIHTGSRGLG 237
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L ++ ++ R++I+T+D +L + SK G++YL +M +
Sbjct: 238 HQVAT--------------DYLRELRES--RESIKTSDPELISIHVKSKIGENYLDAMKS 281
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR + R+ F K F+ P+ ++Y ++HNIAK E+H+V+GK K+L+V
Sbjct: 282 AANFAFVNRQMAIYGVRKVFKKFFDVEPE-----LVYSLAHNIAKVEDHIVEGKTKSLIV 336
Query: 241 HRK 243
HRK
Sbjct: 337 HRK 339
>gi|220916117|ref|YP_002491421.1| hypothetical protein A2cp1_1004 [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953971|gb|ACL64355.1| protein of unknown function UPF0027 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 488
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 149/248 (60%), Gaps = 20/248 (8%)
Query: 1 MFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADP 58
++ +P GVG+ IP + +R+L+E L G W++ G+ A+D + CEE GR+ ADP
Sbjct: 126 IYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVARGFRAAADDADRCEEGGRLAGADP 185
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+ VS RA++RG QLGTLG+GNH+ E+ V I+D AA G+ GQ+ V IHSGSRG
Sbjct: 186 AAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFP-GQLVVQIHSGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKR---DNIETNDRQLACARINSKEGQDYL 175
G+QV C+ +AL ++ + D DRQLACA + S EG+ YL
Sbjct: 245 LGYQV----CD----------EALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYL 290
Query: 176 KSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 235
+M AAANFAW NR MT L +A + + +L ++YDV HN+AK E+H+VDG
Sbjct: 291 AAMQAAANFAWANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDHLVDGGV 350
Query: 236 KTLLVHRK 243
+ +LVHRK
Sbjct: 351 RRVLVHRK 358
>gi|153003854|ref|YP_001378179.1| hypothetical protein Anae109_0986 [Anaeromyxobacter sp. Fw109-5]
gi|152027427|gb|ABS25195.1| protein of unknown function UPF0027 [Anaeromyxobacter sp. Fw109-5]
Length = 479
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 145/245 (59%), Gaps = 14/245 (5%)
Query: 1 MFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGYIWA-EDKEHCEEYGRMLNADP 58
+F +P GVG+ IP ++ R+L+E LE G W++R G+ A +D E CEE GR+ AD
Sbjct: 117 LFRDVPTGVGASRAIPTLSDRELDEVLEGGARWAVRRGFAAASDDAERCEEGGRLAGADA 176
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
S VS RA+ RG QLGTLG+GNH+ E+ V E+YD AA G+ G+V + IHSGSRG
Sbjct: 177 SAVSARARARGADQLGTLGSGNHFLEVDRVAEVYDPQAAEAFGLVP-GRVALQIHSGSRG 235
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G+QV C++ F + + D + D QLA A I S GQ YL +M
Sbjct: 236 LGYQV----CDE-------FVAEIARRRPEFGPDYADLPDPQLAAAPIGSALGQRYLGAM 284
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAANFAW NR MT L +A + DL V+YDV HN+AK EEH ++G ++ +
Sbjct: 285 QAAANFAWANRQVMTGLAVRALLHVLRISERDLGARVLYDVCHNVAKLEEHDIEGARRRV 344
Query: 239 LVHRK 243
LVHRK
Sbjct: 345 LVHRK 349
>gi|258404471|ref|YP_003197213.1| hypothetical protein Dret_0333 [Desulfohalobium retbaense DSM 5692]
gi|257796698|gb|ACV67635.1| protein of unknown function UPF0027 [Desulfohalobium retbaense DSM
5692]
Length = 476
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 141/239 (58%), Gaps = 19/239 (7%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP GVG G + ++ +L++ L +G W++ +GY + D E+ E+ G + A+P VS
Sbjct: 127 IPAGVGRGGQLRLSGSELDDVLRLGARWAVAQGYGESRDLEYIEDGGCLSGANPEVVSET 186
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AKKR Q+GTLG+GNHY E+Q VD IYD+ AA G+++ G V V +H GSR GHQ+
Sbjct: 187 AKKRQQDQVGTLGSGNHYLEVQYVDAIYDQAAAFAFGLKE-GGVVVSLHCGSRALGHQIG 245
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T D + + +A ++ ++ R L CA I+SKEG+DY ++MA N
Sbjct: 246 T--------------DYIQILGRAAQKRSLHLPSRDLVCAPIDSKEGRDYYQAMACGVNC 291
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A NR + L RQAFA+ F + ++YDVSHN K E+H VDG +K+L VHRK
Sbjct: 292 ALANRQVLGHLVRQAFAEMFPLA----RLELLYDVSHNTCKVEDHDVDGLRKSLYVHRK 346
>gi|313125940|ref|YP_004036210.1| hypothetical protein Hbor_11750 [Halogeometricum borinquense DSM
11551]
gi|448285780|ref|ZP_21477019.1| hypothetical protein C499_03368 [Halogeometricum borinquense DSM
11551]
gi|312292305|gb|ADQ66765.1| uncharacterized conserved protein [Halogeometricum borinquense DSM
11551]
gi|445575810|gb|ELY30273.1| hypothetical protein C499_03368 [Halogeometricum borinquense DSM
11551]
Length = 489
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 150/251 (59%), Gaps = 17/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G GI+ + +++ L G+DW+L G+ D HCE+ G +ADP
Sbjct: 131 LFANIPSGLGGGGIVESDVDTVDQVLSRGVDWALEHGHAVEADLAHCEDEGFRPDADPDA 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V +++ + A++ G+E+ Q+ V+IH GSRG G
Sbjct: 191 VSQKAKDRGKNQLGSLGSGNHFLEVQRVTDVFREDVATEFGLEE-DQIVVLIHCGSRGLG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMA 179
HQV T D L ++EK D +E+ D++LA A S ++Y +M
Sbjct: 250 HQVCT--------------DYLRRIEKEHG-DLLESLPDKELAAAPAGSDLAEEYYGAMC 294
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AA NFAWVNR + R+ F + F ++++M ++YDV+HNIAK E H V G+++ L
Sbjct: 295 AAINFAWVNRQLIMHRTRRVFERVFGRDWEEMEMDLLYDVAHNIAKKEVHDVGGEERELF 354
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 355 VHRKGATRAFP 365
>gi|389579482|ref|ZP_10169509.1| hypothetical protein DespoDRAFT_01391 [Desulfobacter postgatei
2ac9]
gi|389401117|gb|EIM63339.1| hypothetical protein DespoDRAFT_01391 [Desulfobacter postgatei
2ac9]
Length = 483
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 150/243 (61%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ + P G+G G I + +L+ + G W+L+ GY D E EE G + ADP K
Sbjct: 126 LYANCPSGLGKGGHIKLKPGELDLLVVKGAKWALKRGYATESDLERTEEGGCLEGADPGK 185
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK RG Q+GTLG+GNH+ EI +VD I+D+ A++MGI QV V IHSGSRGFG
Sbjct: 186 VSDRAKNRGQDQVGTLGSGNHFIEIDMVDRIFDEPVATRMGIFH-NQVTVQIHSGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D + +++K +++ DR+L CA ++S EGQDYL +M A
Sbjct: 245 HQVCS--------------DYVKRLQKTIQQYGFSLPDRELVCAPLSSPEGQDYLAAMNA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+VNR +T+ R++F + + ++ +YD++HN+A+ EEH VDG++ + V
Sbjct: 291 AANYAFVNRQLLTYHIRRSFEQVLAGKVKNHHVYQVYDIAHNMARIEEHEVDGRRIKVCV 350
Query: 241 HRK 243
HRK
Sbjct: 351 HRK 353
>gi|197121420|ref|YP_002133371.1| hypothetical protein AnaeK_1007 [Anaeromyxobacter sp. K]
gi|196171269|gb|ACG72242.1| protein of unknown function UPF0027 [Anaeromyxobacter sp. K]
Length = 487
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 149/248 (60%), Gaps = 20/248 (8%)
Query: 1 MFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADP 58
++ +P GVG+ IP ++ R+L+E L G W++ G+ A+D + CEE GR+ ADP
Sbjct: 125 IYRDVPTGVGASAAIPRLSPRELDEVLAEGARWAVARGFRAAADDADRCEEGGRLAGADP 184
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+ VS RA++RG QLGTLG+GNH+ E+ V I+D AA G+ GQ+ V IHSGSRG
Sbjct: 185 AAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFP-GQLVVQIHSGSRG 243
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKR---DNIETNDRQLACARINSKEGQDYL 175
G+QV C+ +AL ++ + D DRQLACA + S EG+ YL
Sbjct: 244 LGYQV----CD----------EALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYL 289
Query: 176 KSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 235
+M AAANFAW NR MT L +A + + +L ++YDV HN+AK E+H+VDG
Sbjct: 290 AAMQAAANFAWANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDHLVDGGV 349
Query: 236 KTLLVHRK 243
+ +LVHRK
Sbjct: 350 RRVLVHRK 357
>gi|328909085|gb|AEB61210.1| UPF0027 [Equus caballus]
Length = 229
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 95/113 (84%), Gaps = 4/113 (3%)
Query: 145 MEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQF 204
ME+AMKRD I NDRQLACARI S EGQDYLK MAAA N+AWVNRSSMTFL RQAFAK F
Sbjct: 1 MEEAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVF 60
Query: 205 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHPGVS 253
NTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLVHRK S P HP ++
Sbjct: 61 NTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIA 113
>gi|86157373|ref|YP_464158.1| hypothetical protein Adeh_0946 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773884|gb|ABC80721.1| protein of unknown function UPF0027 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 487
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 147/248 (59%), Gaps = 20/248 (8%)
Query: 1 MFDHIPVGVGSKGIIP-MNARDLEEALEMGMDWSLREGY-IWAEDKEHCEEYGRMLNADP 58
++ +P GVG+ IP + AR+L+E L G W++ G+ A+D + CEE GR+ ADP
Sbjct: 125 IYRDVPTGVGASAAIPRLTARELDEVLAEGARWAVARGFRAAADDADRCEEGGRLAGADP 184
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+ VS RA++RG QLGTLG+GNH+ E+ V I+D AA G+ GQ+ V IHSGSRG
Sbjct: 185 AAVSARARERGSDQLGTLGSGNHFLELDRVARIHDAVAAEAFGLFP-GQLVVQIHSGSRG 243
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKR---DNIETNDRQLACARINSKEGQDYL 175
G+QV C+ +AL ++ + D DRQLACA + S EG+ YL
Sbjct: 244 LGYQV----CD----------EALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYL 289
Query: 176 KSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 235
+M AAANFAW NR MT L +A + +L ++YDV HN+AK E+H VDG
Sbjct: 290 AAMQAAANFAWANRQVMTGLAVRALLDTLGVSDRELGARLLYDVCHNVAKLEDHQVDGGV 349
Query: 236 KTLLVHRK 243
+ +LVHRK
Sbjct: 350 RRVLVHRK 357
>gi|397689534|ref|YP_006526788.1| hypothetical protein MROS_0532 [Melioribacter roseus P3M]
gi|395811026|gb|AFN73775.1| Hypothetical protein MROS_0532 [Melioribacter roseus P3M]
Length = 529
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 151/256 (58%), Gaps = 21/256 (8%)
Query: 1 MFDHIPVGVGSKGII-PMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +IP GVG+ G I ++ +++ + L G W++ G+ +D + EE GR+ ADP
Sbjct: 166 LFKNIPTGVGASGAIRKLSEKEIRKILVNGSRWAVENGFGSEDDLLYTEENGRLEGADPD 225
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RG Q GTLG+GNH+ E+ +V+EIYD+ A G+ GQ+ ++IH+GSRG
Sbjct: 226 AVSRRAIERGADQAGTLGSGNHFLEVDLVEEIYDEKIADIFGLFK-GQLVILIHTGSRGL 284
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+QV C+ D L + + K+ D+QLACA I S EG+DYL +M
Sbjct: 285 GYQV----CD----------DYLKLLVNSEKKFGFNLPDKQLACAPIKSVEGKDYLNAMK 330
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV---DGKQ- 235
AAANFAW NR + L ++ + + + +L ++YDV HNIAK EEH++ DG +
Sbjct: 331 AAANFAWNNRQIIMHLAKKTLIETLSISQRELGFELVYDVCHNIAKIEEHVITEKDGDRI 390
Query: 236 -KTLLVHRKVSEPSHP 250
K + VHRK + + P
Sbjct: 391 LKKVCVHRKGATRAFP 406
>gi|448337147|ref|ZP_21526229.1| hypothetical protein C487_05614 [Natrinema pallidum DSM 3751]
gi|445626493|gb|ELY79836.1| hypothetical protein C487_05614 [Natrinema pallidum DSM 3751]
Length = 488
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 149/252 (59%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L G+ +D HCE+ G A+P K
Sbjct: 128 LFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGAEPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ ++ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDADVGEAYGLEE-DRIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + ++++M ++YDV+HNIAK E H V DG+++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWEEMEMELLYDVAHNIAKKETHTVGADGEEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|296268820|ref|YP_003651452.1| hypothetical protein Tbis_0835 [Thermobispora bispora DSM 43833]
gi|296091607|gb|ADG87559.1| protein of unknown function UPF0027 [Thermobispora bispora DSM
43833]
Length = 465
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 148/240 (61%), Gaps = 25/240 (10%)
Query: 5 IPVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP G G G+ ++ R L+E L G +++ +G+ A D E CE+ G + +ADP +V
Sbjct: 122 IPRGAGPGGVWKLSGRAQLDELLRKGARYAVEQGHGVARDLERCEDQGAVADADPDQVGD 181
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA KRGL Q+G+LG+GNH+ E+Q V+++YD+ A+ G+ +GQVCVMIH GSRG GHQ+
Sbjct: 182 RAIKRGLGQVGSLGSGNHFLEVQAVEQVYDEKVAAAFGLR-LGQVCVMIHCGSRGLGHQI 240
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + M+KAM+R I DRQLACA + S EG+ YL +MAAAAN
Sbjct: 241 CT--------------DHVRVMDKAMRRYGISVPDRQLACAPVESPEGRAYLGAMAAAAN 286
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
++ NR + R+AF K T LD+ +YDVSHN+AK E H DG + L VHRK
Sbjct: 287 YSRANRQLLAEATRRAFQK---VTGARLDL--VYDVSHNLAKLERH--DG--RLLCVHRK 337
>gi|410463461|ref|ZP_11316975.1| hypothetical protein B193_1487 [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983425|gb|EKO39800.1| hypothetical protein B193_1487 [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 474
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 135/254 (53%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ +D++ L G W++ +GY A D CEE G M ADP
Sbjct: 121 LFSRVPCGVGQGGALRLSDKDMDRMLRHGAAWAVSQGYGEAADLTRCEEGGTMAGADPGH 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+ R +LG+LG+GNHY E+Q V++I + +A G+ GQV V IH GSRG G
Sbjct: 181 VSATARNRQRDELGSLGSGNHYLEVQWVEDILGRASADAYGLRP-GQVVVSIHCGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +A I D LACA + S EGQ YL +M A
Sbjct: 240 HQVAT--------------DHMAAMRRAAPGHGIALPDPDLACAPVASAEGQAYLGAMRA 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A R +T L R+ F + F + +++DVSHN K E H G+ +TL V
Sbjct: 286 AVNCALAGRQVITHLVREVFGELFPGC----RLPLLFDVSHNTCKAERHGAGGRARTLYV 341
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 342 HRKGATRAYGPGHP 355
>gi|384916032|ref|ZP_10016232.1| conserved hypothetical protein [Methylacidiphilum fumariolicum
SolV]
gi|384526560|emb|CCG92103.1| conserved hypothetical protein [Methylacidiphilum fumariolicum
SolV]
Length = 476
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 140/243 (57%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G I ++ ++++ L G W++ +GY ED + EE G M ADP
Sbjct: 123 LFKEIPAGVGSHGKIHLDKNEMDKMLVGGAKWAIEQGYGKEEDLQRIEEGGCMPGADPQA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R ++GTLG+GNHYAE+Q+V +I+D+ A + I + G + V IH GSRG G
Sbjct: 183 VSNLAKERQAKEMGTLGSGNHYAEVQVVGKIFDEAIAKLLSIHE-GDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +M ++ IE +R+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------DYLKEMVVCAQKLKIELPERELACAPIQSDLGKRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+ F+ F ++ M ++YDVSHN K EEH ++G K L V
Sbjct: 288 GINCALANRQILTHLIRKVFSYFF----PNIFMPLLYDVSHNTCKVEEHSINGGSKKLFV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|159038128|ref|YP_001537381.1| hypothetical protein Sare_2548 [Salinispora arenicola CNS-205]
gi|157916963|gb|ABV98390.1| protein of unknown function UPF0027 [Salinispora arenicola CNS-205]
Length = 472
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 152/250 (60%), Gaps = 25/250 (10%)
Query: 6 PVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
P G G + + R DL+ L G ++++ G+ D E CE++G + +ADP VS R
Sbjct: 126 PRGAGRGAVWHVTGRSDLDGVLREGSRYAVQRGFGVGRDLERCEDHGALDDADPGAVSPR 185
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A +RG Q+G+LG+GNH+ E+Q V E+YD A+ G+ GQVCVMIH GSRG GHQ+
Sbjct: 186 AVERGATQVGSLGSGNHFLEVQSVAEVYDHDVATTFGLWP-GQVCVMIHCGSRGLGHQIC 244
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T D + +MEKAM+R +I+ DRQLACA + S EG DYL +MAAAAN+
Sbjct: 245 T--------------DYVRRMEKAMRRYDIQVPDRQLACAPVESPEGHDYLGAMAAAANY 290
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A NR +T + R F + T +LD+ +YDVSHN AK E H VDG+++TL VHRK
Sbjct: 291 ARANRQLLTHVARVVFRR---VTGGNLDL--VYDVSHNQAKIETHGVDGERRTLCVHRKG 345
Query: 245 S----EPSHP 250
+ P HP
Sbjct: 346 ATRALPPGHP 355
>gi|158428616|pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
gi|158428617|pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 154/257 (59%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 134 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 193
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG
Sbjct: 194 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 252
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + K R IE D+QLA A I S EGQDYL++ A
Sbjct: 253 GHQV---------CQDYV-----ERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAXA 298
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + + +L
Sbjct: 299 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 353
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 354 VHRKGATRAFGPGHPEV 370
>gi|48477677|ref|YP_023383.1| RtcB protein [Picrophilus torridus DSM 9790]
gi|48430325|gb|AAT43190.1| RtcB protein [Picrophilus torridus DSM 9790]
Length = 470
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 146/250 (58%), Gaps = 19/250 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+ K +N D+ + L G+ W++ +GY D E EE G M N++P K
Sbjct: 119 IFKNVPAGIDLKSSFRVNKNDMTDILSDGIKWAVSKGYGTERDIESTEENGSM-NSNPDK 177
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG+ ++G+LG GNH+ EIQ VD I+D+ A GIE + +M+H+GSRG G
Sbjct: 178 VSEKAISRGINEVGSLGGGNHFLEIQKVDRIFDERTARYFGIEK-DNIMIMVHTGSRGLG 236
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+++ + + +I+ DRQL A S G+ Y+ +M +
Sbjct: 237 HQVAT--------------DYLMELNE---KSDIKVKDRQLISAYTKSGIGESYIMAMNS 279
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANF +VNR + + R+AF F + L + ++Y ++HN+AK EEH +D K+ L+V
Sbjct: 280 AANFGFVNRQIILYKIRRAFESVFKKDFESLGLDLVYSLAHNMAKIEEHNIDNKRLKLIV 339
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 340 HRKGATRAFP 349
>gi|386359712|ref|YP_006057957.1| hypothetical protein TtJL18_0257 [Thermus thermophilus JL-18]
gi|383508739|gb|AFH38171.1| hypothetical protein TtJL18_0257 [Thermus thermophilus JL-18]
Length = 958
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 117/257 (45%), Positives = 156/257 (60%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 605 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 664
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VDEIYD+ AA G+ GQ+ V+IH+GSRG
Sbjct: 665 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEIYDEEAAEAFGLFK-GQITVLIHTGSRGL 723
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + KA R IE D+QLA A I S EGQDYL++MA
Sbjct: 724 GHQV---------CQDYV-----ERFLKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 769
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + + +L
Sbjct: 770 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 824
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 825 VHRKGATRAFGPGHPEV 841
>gi|46199728|ref|YP_005395.1| rtcB protein [Thermus thermophilus HB27]
gi|46197354|gb|AAS81768.1| rtcB protein [Thermus thermophilus HB27]
Length = 476
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 155/257 (60%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 123 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESEGRLPWANPD 182
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG
Sbjct: 183 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 241
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + KA R IE D+QLA A I S EGQDYL++MA
Sbjct: 242 GHQV---------CQDYV-----ERFLKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 287
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + +L
Sbjct: 288 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKLEEH----GGRRVL 342
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 343 VHRKGATRAFGPGHPEV 359
>gi|20095118|ref|NP_614965.1| hypothetical protein MK1682 [Methanopyrus kandleri AV19]
gi|74558780|sp|Q8TUS2.1|RTCB_METKA RecName: Full=tRNA-splicing ligase RtcB; Contains: RecName:
Full=Mka hyp2 intein
gi|19888413|gb|AAM02895.1| Uncharacterized conserved protein [Methanopyrus kandleri AV19]
Length = 988
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 162/262 (61%), Gaps = 33/262 (12%)
Query: 1 MFDHIPVGVGSK-GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E G M +A +
Sbjct: 608 IFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGNMTHAYET 667
Query: 60 -----------KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQV 108
S RA +RG PQLGTLG+GNH+ E+Q+VDEIYDK AA KMGI + GQV
Sbjct: 668 IGWEEYGPRDDVASKRAIERGRPQLGTLGSGNHFLEVQVVDEIYDKEAAEKMGIREEGQV 727
Query: 109 CVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAM----KRDNIETNDRQLACA 164
+M+H+GSRGFGHQV + D L ME++M +R + DRQLACA
Sbjct: 728 TIMVHTGSRGFGHQVCS--------------DHLRIMERSMRDVERRFGVRIPDRQLACA 773
Query: 165 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTT---PDDLDMHVIYDVSH 221
+ + E + Y +M AAAN+A+ NR ++ R++F + F DD+ + VIYD++H
Sbjct: 774 AMGTDEAKRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDEYGDADDMGIEVIYDIAH 833
Query: 222 NIAKTEEHMVDGKQKTLLVHRK 243
N+AK E+H VDG+++ L+VHRK
Sbjct: 834 NMAKIEKHPVDGEERWLVVHRK 855
>gi|55981754|ref|YP_145051.1| hypothetical protein TTHA1785 [Thermus thermophilus HB8]
gi|55773167|dbj|BAD71608.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 476
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 155/257 (60%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 123 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 182
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG
Sbjct: 183 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 241
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + K R IE D+QLA A I S EGQDYL++MA
Sbjct: 242 GHQV---------CQDYV-----ERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 287
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + + +L
Sbjct: 288 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 342
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 343 VHRKGATRAFGPGHPEV 359
>gi|322368825|ref|ZP_08043392.1| hypothetical protein ZOD2009_05047 [Haladaptatus paucihalophilus
DX253]
gi|320551556|gb|EFW93203.1| hypothetical protein ZOD2009_05047 [Haladaptatus paucihalophilus
DX253]
Length = 500
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 144/265 (54%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP G+G G++ + E LE GM W+L EGY D HCE+ G +DPS
Sbjct: 128 LFDAIPSGLGGGGVVESGIDTVNEVLERGMAWALDEGYATDADLAHCEDEGVREESDPSA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V +++ + A G+ + GQV V+IH GSRG G
Sbjct: 188 VSTKAKNRGKNQLGSLGSGNHFLEVQRVTDVFREEVADAYGLSE-GQVVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L ++EK + DR+LA A S+ ++Y +M A
Sbjct: 247 HQVCT--------------DYLRKIEKRHSGLLSKLPDRELAAAPAGSRLAEEYYAAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + R+ F F+ + M ++YDV+HNIAK E H+V
Sbjct: 293 AINFAWVNRQLVMHRTREVFEDVFDRPWRTMGMELLYDVAHNIAKKETHVVRVGPEGRPV 352
Query: 232 -DG-----KQKTLLVHRKVSEPSHP 250
DG +++ L VHRK + + P
Sbjct: 353 GDGEAVEREERELFVHRKGATRAFP 377
>gi|388455709|ref|ZP_10138004.1| hypothetical protein FdumT_04018 [Fluoribacter dumoffii Tex-KL]
Length = 476
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 139/254 (54%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGSK I + R +++ L G W++++GY ED E E+ GR+ A P
Sbjct: 123 LFAHIPAGVGSKSRINLTMRQMDDMLLGGAVWAVKQGYGEKEDLERIEDNGRVEGALPEH 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY EIQ V +IY + A+ G+ + G V V IH GSRG G
Sbjct: 183 VSEHAKKRQKNEMGTLGSGNHYLEIQEVRKIYCEKTATAFGLAE-GDVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + ++ I+ DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------DFLRSMLISAQQHGIQLTDRELACAPIRSAMGESYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R+ F + T + +IYDVSHN K E H V+GK L V
Sbjct: 288 GINCALANREILTHFMREVFQDEMPGT----QIKLIYDVSHNTCKEETHQVEGKTMRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAFGPGHP 357
>gi|448410863|ref|ZP_21575491.1| hypothetical protein C475_14213 [Halosimplex carlsbadense 2-9-1]
gi|445671179|gb|ELZ23772.1| hypothetical protein C475_14213 [Halosimplex carlsbadense 2-9-1]
Length = 487
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 151/251 (60%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G G+ + D+E L+ GM+W+L EG ED EHCE+ G ++DPS
Sbjct: 128 LFANVPSGLGGGGVYEGSIDDVEAILDRGMEWALEEGVAVPEDLEHCEDEGVRHDSDPST 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +IY + A+ G+E QV V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDIYREDVAADFGLES-DQVVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L ++E+A + D++LA A S+ +DY +M A
Sbjct: 247 HQVCT--------------DYLREIEQAHSGLLSQLPDKELAAAPAGSQLAEDYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ-KTLL 239
A NFAWVNR + R+ F F+ + ++++M ++YDV+HNIAK E H V+G + + +
Sbjct: 293 AINFAWVNRQLIMHRTREVFETVFDRSWEEMEMDLLYDVAHNIAKKETHEVEGGEDREVY 352
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 VHRKGATRAFP 363
>gi|429197207|ref|ZP_19189120.1| hypothetical protein STRIP9103_00646 [Streptomyces ipomoeae 91-03]
gi|428667101|gb|EKX66211.1| hypothetical protein STRIP9103_00646 [Streptomyces ipomoeae 91-03]
Length = 477
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 145/258 (56%), Gaps = 25/258 (9%)
Query: 5 IPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP G G G+ P LE L G +++ EGY D CE+ G + +AD +VS
Sbjct: 130 IPRGAGPGGVWQPTGPGQLERILRGGSRYAVEEGYGEERDLRRCEDGGAVADADVDEVSR 189
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA++RGL Q+G+LG+ NH+ E+Q VDE+YD+ A+ GI Q+CVMIH GSRG GHQ+
Sbjct: 190 RARERGLGQVGSLGSANHFLEVQRVDEVYDEKTATAFGIA-ADQLCVMIHCGSRGLGHQI 248
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + M++AM R I DRQLAC + S EG+ YL +MAAAAN
Sbjct: 249 CT--------------DHVRAMDRAMSRYGITVPDRQLACTPVESPEGRAYLGAMAAAAN 294
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR ++ R+ F + + ++YDVSHN+AK E H V G ++ L VHRK
Sbjct: 295 YGRANRQLLSDAARRVFRRATGAR-----LTLVYDVSHNLAKIETHTVAGARRRLCVHRK 349
Query: 244 VS----EPSHPGVSRNKK 257
+ P HP + R+ +
Sbjct: 350 GATRAFPPGHPDLPRDLR 367
>gi|297618298|ref|YP_003703457.1| hypothetical protein Slip_2150 [Syntrophothermus lipocalidus DSM
12680]
gi|297146135|gb|ADI02892.1| protein of unknown function UPF0027 [Syntrophothermus lipocalidus
DSM 12680]
Length = 473
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 141/251 (56%), Gaps = 24/251 (9%)
Query: 5 IPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+P GVG KG+ + AR EE + G ++ G+ ED E EE G + AD ++VS
Sbjct: 124 VPTGVGKKGLHRGITARIFEEVVYQGATAVVKAGFGCPEDIERIEENGCLPGADLAEVSR 183
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
A KRG QLGTLG GNH+ E+Q VD+++D A + G+ + GQ+ VMIH+GSRGFGHQ+
Sbjct: 184 EAIKRGSEQLGTLGGGNHFIELQRVDKVFDPEVAERFGLFE-GQLTVMIHTGSRGFGHQI 242
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D A R IE + LACA I+S EG+ Y +MA A N
Sbjct: 243 CT--------------DYSKGHIPAAPRYGIELPSKGLACAPIDSAEGRSYYAAMACAVN 288
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A+ NR +T RQAF + +D+ + V+YDV+HNIAK EEH + LLVHRK
Sbjct: 289 YAFANRQIITADIRQAFVQVLGLRLEDIGLQVVYDVAHNIAKWEEH----GGRRLLVHRK 344
Query: 244 VS----EPSHP 250
+ P HP
Sbjct: 345 GATRALPPGHP 355
>gi|448368966|ref|ZP_21555733.1| hypothetical protein C480_12921 [Natrialba aegyptia DSM 13077]
gi|445651509|gb|ELZ04417.1| hypothetical protein C480_12921 [Natrialba aegyptia DSM 13077]
Length = 488
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ +EE LE G+DW+L G+ +D HCE+ G ADP K
Sbjct: 130 LFANIPSGLGGGGVVEAGVDTVEEILERGVDWALENGHAVEDDLLHCEDEGMREGADPGK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGEAYGLE-TDQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ F + F+ + + +DMH++YDV+HNIAK E H V G ++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRRVFERVFDRSWEAMDMHLLYDVAHNIAKKETHTVGGDERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|358636527|dbj|BAL23824.1| hypothetical protein AZKH_1503 [Azoarcus sp. KH32C]
Length = 476
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 136/243 (55%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVGS G++ ++ ++ L+ G W+++EG+ D H EE G ADP+
Sbjct: 123 LYARIPAGVGSTGVVHLSGAGMDAMLKGGARWAVKEGWGSEADLAHIEESGCAAGADPAA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKR ++GTLG+GNHY E+Q+VD ++D AA G+E VG V V IH GSRG G
Sbjct: 183 VSDMAKKRQRDEMGTLGSGNHYLEVQVVDAVFDGEAAQAYGLE-VGDVVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +M A I DR+LACA + S GQ YL +M A
Sbjct: 242 HQIGT--------------DYLREMAIAAPAAGIALPDRELACAPLKSDLGQRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R AFA+ F + + V+YDVSHN K E H V ++ L V
Sbjct: 288 GINCALANRQILTHLARGAFAEVF----PGVHLPVLYDVSHNTCKEESHRVGDTRRRLFV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|448391680|ref|ZP_21566775.1| hypothetical protein C477_11182 [Haloterrigena salina JCM 13891]
gi|445665092|gb|ELZ17770.1| hypothetical protein C477_11182 [Haloterrigena salina JCM 13891]
Length = 488
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 150/252 (59%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ +EE LE G+DW+L G+ ED HCE+ G AD K
Sbjct: 128 LFANIPSGLGGGGVVEAGVDTVEEILERGVDWALEHGHAVEEDLLHCEDEGMREGADADK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D + G+E+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGDVGAAYGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + + D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEKQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTL 238
A NFAWVNR + RQ F + F+ + + +DMH++YDV+HNIAK E H+V DG ++ L
Sbjct: 293 AINFAWVNRQLIMHRTRQVFERVFDRSWESMDMHLLYDVAHNIAKKETHVVNDDGDEREL 352
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 YVHRKGATRAFP 364
>gi|384431964|ref|YP_005641324.1| hypothetical protein [Thermus thermophilus SG0.5JP17-16]
gi|333967432|gb|AEG34197.1| protein of unknown function UPF0027 [Thermus thermophilus
SG0.5JP17-16]
Length = 958
Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats.
Identities = 116/257 (45%), Positives = 156/257 (60%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 605 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 664
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+VS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG
Sbjct: 665 RVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 723
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + KA R IE D+QLA A I S EGQDYL++MA
Sbjct: 724 GHQV---------CQDYV-----ERFLKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 769
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + + +L
Sbjct: 770 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 824
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 825 VHRKGATRAFGPGHPEV 841
>gi|242279961|ref|YP_002992090.1| hypothetical protein Desal_2495 [Desulfovibrio salexigens DSM 2638]
gi|242122855|gb|ACS80551.1| protein of unknown function UPF0027 [Desulfovibrio salexigens DSM
2638]
Length = 475
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 142/261 (54%), Gaps = 23/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G G G I + L+E L G W++ +G ED E GR ADP K
Sbjct: 122 LFKRIPSGAGVGGDIILEGDQLDEMLLGGASWAVGQGVGKPEDLGRIEGNGRNNFADPCK 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V ++AK+R Q+G+LG+GNHY E+Q V+EIYDK A+ GI + V V IH GSRG G
Sbjct: 182 VPLKAKQRMRNQMGSLGSGNHYLEVQYVEEIYDKAKAAAFGI-GIDDVVVSIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A D L M KA I+ + +ACA INS+ G+DYL +M A
Sbjct: 241 HQIAK--------------DYLPMMAKAAPGFGIKLPHKDIACAPINSELGRDYLGAMGA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR ++T L R+ F +T P D+ ++YDVSHN EE ++GK+K L V
Sbjct: 287 GINCALANRQAITHLVRECFT---DTLP-QADLRLLYDVSHNTCHREEFKINGKKKNLWV 342
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP + R K
Sbjct: 343 HRKGATRALGPGHPELPREFK 363
>gi|381191239|ref|ZP_09898750.1| hypothetical protein RLTM_09883 [Thermus sp. RL]
gi|380451028|gb|EIA38641.1| hypothetical protein RLTM_09883 [Thermus sp. RL]
Length = 958
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 116/257 (45%), Positives = 156/257 (60%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 605 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 664
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+VS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG
Sbjct: 665 RVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 723
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + KA R IE D+QLA A I S EGQDYL++MA
Sbjct: 724 GHQV---------CQDYV-----ERFLKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 769
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + + +L
Sbjct: 770 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 824
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 825 VHRKGATRAFGPGHPEV 841
>gi|448727839|ref|ZP_21710186.1| hypothetical protein C448_14188 [Halococcus morrhuae DSM 1307]
gi|445789397|gb|EMA40084.1| hypothetical protein C448_14188 [Halococcus morrhuae DSM 1307]
Length = 485
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 151/250 (60%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ +EE L+ G++W+L EGY +D HCE+ GR +ADP
Sbjct: 128 LFANIPSGLGGGGVVESGVETVEEILDRGVEWALDEGYAVEDDLAHCEDEGRRPDADPDA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS ++K RG Q+G+LG+GNH+ E+Q V +++ + A G+ + Q+ V+IH GSRG G
Sbjct: 188 VSQKSKDRGKNQIGSLGSGNHFLEVQRVTDVFREGVADSYGLSE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T E + P+ L Q+ D++LA A S+ ++Y +M A
Sbjct: 247 HQVCT---EYTREVEQAHPELLEQL-----------PDKELAAAPAGSQLAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNR + R+ F + F+ + ++++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 293 AINYAWVNRQLIMHRTRKVFERVFDRSWEEMEMDLLYDVAHNIAKKEAHEVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|357632947|ref|ZP_09130825.1| protein of unknown function UPF0027 [Desulfovibrio sp. FW1012B]
gi|357581501|gb|EHJ46834.1| protein of unknown function UPF0027 [Desulfovibrio sp. FW1012B]
Length = 476
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 137/254 (53%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++D +P G+G+ G + ++ RD++ L G W++REG+ D CEE G M ADP+
Sbjct: 123 LYDAVPAGLGAGGRLRLSDRDMDRMLAGGAAWAVREGFGQTGDLPRCEEGGTMPGADPAG 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A++R +LGTLG+GNHY E+Q V++I+D AS G+ GQV V IH GSRG G
Sbjct: 183 VSAKARERQRDELGTLGSGNHYLEVQHVEKIFDSRTASAYGLRP-GQVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT + + M A + D +LA A I S G YL +M A
Sbjct: 242 HQVAT--------------EHMAAMLAAAPGHGLTVADPELAFAPIESPAGVRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A R +T L R+ FA F + ++YDVSHN K E H V KTL V
Sbjct: 288 AINCALAGRQIITHLVREVFAALF----PGCRLALLYDVSHNTCKVERHAVGKSVKTLHV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|15605635|ref|NP_213010.1| hypothetical protein aq_032 [Aquifex aeolicus VF5]
gi|2982790|gb|AAC06415.1| hypothetical protein aq_032 [Aquifex aeolicus VF5]
Length = 480
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
M ++P GVGS I ++ ++E L G W++ G+ + ED +H E +G + NADP K
Sbjct: 125 MLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEHGFGFPEDLQHIEGFGALPNADPEK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
S A +RG +LGT+G+GNH+ E+Q V++IY+ A K+GI + GQV VM+HSGSRGFG
Sbjct: 185 ASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEPEIAEKLGIWE-GQVMVMVHSGSRGFG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L K + I+ D QLAC NS EGQ Y K+M A
Sbjct: 244 HQVCT--------------DYLRVALKVRDKYKIKLPDPQLACMPFNSPEGQAYFKAMNA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + F K + ++ +IYD +HNI K E+H VDGK+ ++V
Sbjct: 290 AANYAFANRQILGFKAANTVRKTLGISWEEFGYRLIYDHAHNIGKVEKHEVDGKKVEVIV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|448711993|ref|ZP_21701536.1| hypothetical protein C446_05410 [Halobiforma nitratireducens JCM
10879]
gi|445791078|gb|EMA41727.1| hypothetical protein C446_05410 [Halobiforma nitratireducens JCM
10879]
Length = 503
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 151/265 (56%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E LE G++W++ G+ ED HCE+ G AD SK
Sbjct: 130 LFANVPSGLGGGGIVEAGVDTVDEILERGVEWAVENGHGVEEDLLHCEDEGIRTEADASK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 190 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGDAYGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY K+M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYKAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + RQ F + F+ T ++++M ++YDV+HNIAK E H V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRTWEEMEMELLYDVAHNIAKKETHEVGVGPEGRPV 354
Query: 232 -DG-----KQKTLLVHRKVSEPSHP 250
DG +++ L VHRK + + P
Sbjct: 355 RDGEAVEREERELFVHRKGATRAFP 379
>gi|154417347|ref|XP_001581694.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915923|gb|EAY20708.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 365
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 139/236 (58%), Gaps = 19/236 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++++IPVGVG K + L + + G W+L G+ ED ++CEE G + ADPS
Sbjct: 148 LYEYIPVGVGGKLDGVCDRDHLRDVMLKGAGWALENGFAVQEDIDNCEENGCLKGADPSL 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S R RG QLGT+GAGNHY E+Q VD+I D+ A M + + GQV VMIH+GSRG G
Sbjct: 208 ISDRTITRGTGQLGTVGAGNHYIEVQRVDKILDEEKARVMDLHE-GQVVVMIHTGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA + V EK +K D+QLA +S+E Q YL++M A
Sbjct: 267 HQVADENMK-------------VCSEKFVKE---SLPDKQLAAPSFHSEESQKYLRAMYA 310
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
AANFAW NR + R+AF+ F L+ H++YDV+HNIAK E+H +DG +K
Sbjct: 311 AANFAWCNRQVIMHNVRRAFSDVFKDR--KLETHLVYDVAHNIAKVEKHNIDGVEK 364
>gi|378778102|ref|YP_005186540.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364508917|gb|AEW52441.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 477
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 140/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+G I + + L++ + G W++++GY A D E E+ G + A P
Sbjct: 124 LFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGAIPDF 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 184 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + I+ DR+LACA I+SK G++YL +M A
Sbjct: 243 HQIGT--------------DYLRSMVIESQHYGIKLADRELACAPIHSKLGENYLGAMRA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H VDGK+K L V
Sbjct: 289 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEVDGKKKRLFV 344
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 345 HRKGATRALGPGHP 358
>gi|260893599|ref|YP_003239696.1| hypothetical protein Adeg_1757 [Ammonifex degensii KC4]
gi|260865740|gb|ACX52846.1| protein of unknown function UPF0027 [Ammonifex degensii KC4]
Length = 473
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 145/259 (55%), Gaps = 27/259 (10%)
Query: 4 HIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++P GVG KG + R EE + G+ + G+ D+E+ EE G + AD S S
Sbjct: 123 YVPTGVGKKGKHQGITRRIFEEVVHRGVTAVIEAGFGQPGDEEYIEEMGCLPGADISACS 182
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
RA +RG QLGTLG GNH+ EIQ V +++D+ A G+ + GQ+ +MIH+GSRGFGHQ
Sbjct: 183 RRACERGEVQLGTLGGGNHFIEIQRVTDVFDEELARCFGLFE-GQLTIMIHTGSRGFGHQ 241
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+ T D ++ A KR IE DR LACA INS EG+ Y ++MA A
Sbjct: 242 ICT--------------DYTNRLAAAAKRYGIELPDRGLACAPINSPEGRAYYQAMACAV 287
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA+ NR + +AFA +P+++ ++YDV+HNIAK EEH + LLVHR
Sbjct: 288 NFAFSNRQIIMADIARAFADVLGQSPEEMGFRLVYDVAHNIAKWEEH----GGRRLLVHR 343
Query: 243 K-------VSEPSHPGVSR 254
K P++P V R
Sbjct: 344 KGATRALCAGHPANPPVYR 362
>gi|52842414|ref|YP_096213.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52629525|gb|AAU28266.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 477
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 140/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+G I + + L++ + G W++++GY A D E E+ G + A P
Sbjct: 124 LFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGAIPDF 183
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 184 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLG 242
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + I+ DR+LACA I+SK G++YL +M A
Sbjct: 243 HQIGT--------------DYLRSMVIESQHYGIKLADRELACAPIHSKLGENYLGAMRA 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H VDGK+K L V
Sbjct: 289 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEVDGKKKRLFV 344
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 345 HRKGATRALGPGHP 358
>gi|218296003|ref|ZP_03496783.1| protein of unknown function UPF0027 [Thermus aquaticus Y51MC23]
gi|218243741|gb|EED10269.1| protein of unknown function UPF0027 [Thermus aquaticus Y51MC23]
Length = 476
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 155/255 (60%), Gaps = 25/255 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W +R G+ + ED E GR+ A+P
Sbjct: 123 LYRLVPSGVGSERKDVRFSKRELKEILKEGAGWLIRRGFGYPEDLRFIESEGRLPWANPE 182
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG+PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQ+ V+IH+GSRG
Sbjct: 183 KVSDRAFERGVPQIGTLGSGNHFLEVQYVDEVYDEEAAEAFGLFP-GQITVLIHTGSRGL 241
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + K R IE D+QLA A I S EG+DYL++MA
Sbjct: 242 GHQV---------CQDYV-----ERFLKVAPRYGIELLDKQLAAAPIRSPEGEDYLQAMA 287
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF ++ P D + V+YD++HN AK EEH + + +L
Sbjct: 288 AAANFAFANRQLIAHFVREAF-ERVGFAPKDHGLRVLYDLAHNNAKFEEH----RGRRVL 342
Query: 240 VHRKVSE----PSHP 250
VHRK + P HP
Sbjct: 343 VHRKGATRAFGPGHP 357
>gi|307611038|emb|CBX00677.1| hypothetical protein LPW_23831 [Legionella pneumophila 130b]
Length = 476
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 139/254 (54%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+ I + + L++ + G W++++GY A D E E+ G + A P
Sbjct: 123 LFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGAIPDF 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 183 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + I+ DR+LACA INSK G++YL +M A
Sbjct: 242 HQIGT--------------DYLRSMVIESQHYGIKLADRELACAPINSKLGENYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H VDGK+K L V
Sbjct: 288 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEVDGKKKRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|381153721|ref|ZP_09865590.1| hypothetical protein Metal_3934 [Methylomicrobium album BG8]
gi|380885693|gb|EIC31570.1| hypothetical protein Metal_3934 [Methylomicrobium album BG8]
Length = 476
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 142/254 (55%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP GVGS+G I +N ++ L G W++ G+ A D E EE G M ADP++
Sbjct: 123 LYRAIPAGVGSRGKIHLNPHEMTAMLTGGARWAIDRGFGEAADLERIEERGCMAGADPAQ 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA++R ++GTLG+GNHY E+Q V EIY + A K G+ G + + IH GSRG G
Sbjct: 183 VSARARERQREEMGTLGSGNHYLEVQRVVEIYHRPVAEKFGLRTDG-IVITIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A + I DR+LACA I S G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKEMAMAAAQYKIALPDRELACAPIRSPLGRRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR +T L ++A +T + + ++YDVSHN K E + V+G++K L +
Sbjct: 288 AINCALANRQILTHLTQKA----VDTVFPGVRLELLYDVSHNTCKVEHYTVNGRKKELYI 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRAYGPGHP 357
>gi|344943309|ref|ZP_08782596.1| protein of unknown function UPF0027 [Methylobacter tundripaludum
SV96]
gi|344260596|gb|EGW20868.1| protein of unknown function UPF0027 [Methylobacter tundripaludum
SV96]
Length = 476
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 139/250 (55%), Gaps = 23/250 (9%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
+P GVGS+G I +N + L G W+L +GY A+D + EE+G M A+ VS R
Sbjct: 127 VPAGVGSRGKIHLNHDRMHGMLTGGAKWALEQGYGEAQDLDRIEEHGCMAGAEAHYVSPR 186
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A++R ++GTLG+GNHY E+Q V EI+D A G+ + V + IH GSRG GHQ+
Sbjct: 187 ARERQKDEMGTLGSGNHYLEVQRVAEIFDPVVAKIFGLH-IDDVVITIHCGSRGLGHQIG 245
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T + L +M + + I DR+LACA +NS G+ YL +M A N
Sbjct: 246 T--------------EFLKEMAMSAAQYRIVLPDRELACAPLNSPLGKKYLGAMRAGINC 291
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A NR +T L RQA A F + + ++YDVSHN K E HM+DG++K L VHRK
Sbjct: 292 ALANRQIITHLTRQAVATVF----PGIHLGLLYDVSHNTCKLEHHMIDGQKKALYVHRKG 347
Query: 245 SE----PSHP 250
+ P HP
Sbjct: 348 ATRAFGPGHP 357
>gi|303246720|ref|ZP_07332998.1| protein of unknown function UPF0027 [Desulfovibrio fructosovorans
JJ]
gi|302492060|gb|EFL51938.1| protein of unknown function UPF0027 [Desulfovibrio fructosovorans
JJ]
Length = 476
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 136/254 (53%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+G G + ++ RD++ L G W++ EGY A D CEE GRM ADP
Sbjct: 123 LFARIPAGLGGTGGLRLSERDMDRMLAGGAVWAVTEGYGEAGDLTRCEEGGRMEGADPEA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA++R LGTLG+GNHY E+Q V+EI D AA+ G+ QV V IH GSRG G
Sbjct: 183 VSSRARERQRDALGTLGSGNHYLEVQRVEEICDARAAAAFGLRP-DQVAVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + M +A R I DR LACA I S EG YL +M A
Sbjct: 242 HQVAT--------------DHMAIMRQAAPRHGISLPDRDLACAPIASPEGARYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A R +T L R+ FA F + ++YDVSHN K E H + L V
Sbjct: 288 AINCALAGRQVITHLVREVFAALFPGC----HLRLLYDVSHNTCKVERHPTRRGNQQLHV 343
Query: 241 HRKVSE----PSHP 250
HRK + PSHP
Sbjct: 344 HRKGATRALGPSHP 357
>gi|313679183|ref|YP_004056922.1| hypothetical protein [Oceanithermus profundus DSM 14977]
gi|313151898|gb|ADR35749.1| protein of unknown function UPF0027 [Oceanithermus profundus DSM
14977]
Length = 478
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 148/244 (60%), Gaps = 21/244 (8%)
Query: 1 MFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+++ +P GVGSK + +N R L LE G W +R+G+ D E E GR+ ADP
Sbjct: 125 LYERVPAGVGSKRRDVKLNRRSLARVLEEGAGWVVRQGWGEPADLEFIESGGRLEGADPG 184
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+VS RA +RGLPQLGTLG+GNH+ E+Q V+++YD AA+ G+ + GQV V+IH+GSRG
Sbjct: 185 RVSERAYERGLPQLGTLGSGNHFLEVQYVEQVYDPEAAAAFGLAE-GQVTVLIHTGSRGL 243
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV +K +A + IE DRQLA A I S EG+ YL +MA
Sbjct: 244 GHQVCQDHVQKFLQVA--------------PKYGIELVDRQLAAAPIESPEGRAYLGAMA 289
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAAN+A+ NR +T R+AF + P + + V+YD++HN AK E H G+Q +L
Sbjct: 290 AAANYAFANRQLITHYVREAF-EAAGFAPREHALRVVYDLAHNNAKFETH--GGRQ--VL 344
Query: 240 VHRK 243
VHRK
Sbjct: 345 VHRK 348
>gi|448352720|ref|ZP_21541501.1| hypothetical protein C483_01861 [Natrialba hulunbeirensis JCM
10989]
gi|445641999|gb|ELY95070.1| hypothetical protein C483_01861 [Natrialba hulunbeirensis JCM
10989]
Length = 488
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 130 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMRDGADPEK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDSEVGEAFGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + + ++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRSWESMEMELLYDVAHNIAKKETHEVDGEERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|448618247|ref|ZP_21666592.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|445747802|gb|ELZ99257.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
Length = 486
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G++ +A +++ L GM+W+L GY +D HCE+ G +A P
Sbjct: 128 LFEAIPSGLGGGGVVTGDAETIDDILARGMEWALDAGYATEDDLAHCEDEGSRDDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK E D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHADLLEELPDKELAAAPARSQLAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H VDG+ + L V
Sbjct: 293 AINFAWVNRQLVMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHTVDGEDRELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|189218321|ref|YP_001938963.1| RtcB family protein [Methylacidiphilum infernorum V4]
gi|189185179|gb|ACD82364.1| RtcB family protein [Methylacidiphilum infernorum V4]
Length = 476
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G I ++ ++++ LE G W++ +GY +D EE G M ADP
Sbjct: 123 LFKEIPAGVGSHGKIVLDKTEIDKMLEGGAKWAIAKGYGLQKDLYRIEEQGCMPGADPQA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+R ++GTLG+GNHYAE+Q+V +I+D+ A I +G + V IH GSRG G
Sbjct: 183 VSHLAKERQAKEMGTLGSGNHYAEVQVVGKIFDEALAKIFSIH-LGDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +M ++ I+ +R+LACA I S+ G+ YL +M A
Sbjct: 242 HQIGT--------------DYLKEMVVCAQKLKIDLPERELACAPIASELGRRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+ F+ F +++ ++YDVSHN K E+H V+G K L V
Sbjct: 288 GINCALANRQIITQLIRKVFSYFF----PGIELPILYDVSHNTCKVEKHAVNGHFKELYV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|448592546|ref|ZP_21651653.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
gi|445731551|gb|ELZ83135.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
Length = 486
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP G+G G++ +A +++ L GM+W++ GY +D HCE+ G +A P
Sbjct: 128 LFDAIPSGLGGGGVVTGDAETIDDILARGMEWAVDAGYATEDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK E D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHADLLDELPDKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ ++DM ++YDV+HNIAK E H VDG ++ L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWREMDMRLLYDVAHNIAKKEVHTVDGDERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|389848149|ref|YP_006350388.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|388245455|gb|AFK20401.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
Length = 503
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G++ +A +++ L GM+W+L GY +D HCE+ G +A P
Sbjct: 145 LFEAIPSGLGGGGVVTGDAETIDDILARGMEWALDAGYATEDDLAHCEDEGSRDDARPEY 204
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG G
Sbjct: 205 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLG 263
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK E D++LA A S+ ++Y +M A
Sbjct: 264 HQ---------TCTDY-----LRRIEKEHADLLEELPDKELAAAPARSQLAEEYYGAMCA 309
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H VDG+ + L V
Sbjct: 310 AINFAWVNRQLVMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHTVDGEDRELYV 369
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 370 HRKGATRAFP 379
>gi|345005046|ref|YP_004807899.1| hypothetical protein [halophilic archaeon DL31]
gi|344320672|gb|AEN05526.1| protein of unknown function UPF0027 [halophilic archaeon DL31]
Length = 485
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 148/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +P G+G G++ +E LE G++W++ EGY +D HCE+ G +A P
Sbjct: 127 LFDAVPSGLGGGGVVNGTRDAVEAVLEHGVEWAVEEGYATEDDLAHCEDEGCRPDARPEF 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG+ QLG+LG+GNH+ E+Q V +I+D+ + G+ + Q+ V+IH GSRG G
Sbjct: 187 VSKKAKDRGMNQLGSLGSGNHFLEVQRVTDIFDEETGAAFGLAE-DQIVVLIHCGSRGLG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ C YV ++ E D++ D+ LA A S+ ++Y +M A
Sbjct: 246 HQI---------CSDYV---RRIEQEHGDLLDSLP--DKDLAAAPAGSELAEEYYGAMCA 291
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR +T R+ F+ F+ ++L + ++YDV+HNIAK E H VDG+ + L V
Sbjct: 292 AVNFAWVNRQLITHRTREVFSDVFDAPVEELGLELLYDVAHNIAKRETHDVDGEDRELFV 351
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 352 HRKGATRAFP 361
>gi|448414133|ref|ZP_21577272.1| hypothetical protein C474_00742 [Halosarcina pallida JCM 14848]
gi|445682426|gb|ELZ34843.1| hypothetical protein C474_00742 [Halosarcina pallida JCM 14848]
Length = 489
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 145/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ + +E L G+DW+L G+ D HCE+ GR +ADP
Sbjct: 131 LFANVPSGLGGGGIVQGDVDAVEGVLSRGVDWALEHGHAVEADLAHCEDEGRRPDADPDA 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLG+LG+GNH+ E+Q V ++Y A++ G+E Q+ V+IH GSRG G
Sbjct: 191 VSQKAKDRGKNQLGSLGSGNHFLEVQRVTDVYRDDVAAEFGLE-ADQIVVLIHCGSRGLG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + D L ++EK D++LA A S+ ++Y +M A
Sbjct: 250 HQVCS--------------DYLRRIEKEHGDLLDSLPDKELAAAPAGSRLAEEYYGAMCA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ F + F + ++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 296 AINFAWVNRQLIMHRTRRVFERVFGRDWEAMEMDLLYDVAHNIAKKEVHDVDGEERELYV 355
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 356 HRKGATRAFP 365
>gi|256084902|ref|XP_002578664.1| hypothetical protein [Schistosoma mansoni]
gi|360042881|emb|CCD78291.1| hypothetical protein Smp_074870 [Schistosoma mansoni]
Length = 272
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 103/129 (79%), Gaps = 4/129 (3%)
Query: 126 GKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFA 185
G + + +V DALV MEKAMKRD IE NDRQLACA INS+EGQDYLK+MAAAAN+A
Sbjct: 25 GNVAALPGIVHVATDALVAMEKAMKRDKIEVNDRQLACAHINSEEGQDYLKAMAAAANYA 84
Query: 186 WVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS 245
WVNRSSMTFL RQAFAK F++TPDDLDM +IYDVSHNIAK EEH VDGK KTLLVHRK S
Sbjct: 85 WVNRSSMTFLARQAFAKIFHSTPDDLDMQIIYDVSHNIAKVEEHWVDGKIKTLLVHRKGS 144
Query: 246 E----PSHP 250
P HP
Sbjct: 145 TRAFPPHHP 153
>gi|354610704|ref|ZP_09028660.1| protein of unknown function UPF0027 [Halobacterium sp. DL1]
gi|353195524|gb|EHB61026.1| protein of unknown function UPF0027 [Halobacterium sp. DL1]
Length = 499
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 146/263 (55%), Gaps = 28/263 (10%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +P G+G G+ DLE ALE G+DW + EGY ED+ HCE+ G +AD S
Sbjct: 128 LFDAVPCGLGGGGVHDGTHGDLEAALERGVDWCVEEGYATREDRLHCEDEGMRPDADLSA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++YD A G+E QV V+IH GSRG G
Sbjct: 188 VSKKAKDRGASQMGSLGSGNHFLEVQRVTDVYDNDTADAFGLE-ADQVVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L ++E ++ LA A S+ DY +M A
Sbjct: 247 HQICS--------------DYLRRIEDEHPEFLASLPEKDLAAAPAGSELADDYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR +T R+ FA F+ + + L+M ++YDV+HNIAK E H V
Sbjct: 293 AINFAWVNRQLITHAVRETFADVFDQSWEALEMDLLYDVAHNIAKRETHDVYEVEDGYSL 352
Query: 232 --DGK--QKTLLVHRKVSEPSHP 250
DG+ ++ L VHRK + + P
Sbjct: 353 EGDGERVERDLYVHRKGATRAFP 375
>gi|269126262|ref|YP_003299632.1| hypothetical protein Tcur_2027 [Thermomonospora curvata DSM 43183]
gi|268311220|gb|ACY97594.1| protein of unknown function UPF0027 [Thermomonospora curvata DSM
43183]
Length = 475
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 149/251 (59%), Gaps = 25/251 (9%)
Query: 5 IPVGVGSKGIIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+P G+G + + P+ R LE L G +++ +GY D E CE+ G + AD + VS
Sbjct: 128 VPRGLGRRAVWPLAGRAQLERVLAGGSRYAVEQGYGTPRDLERCEDGGAVGGADAAAVSA 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL QLG+LG+GNH+ E+Q V E++D+ AA G+ GQ+CVMIHSGSRG GHQ+
Sbjct: 188 RAMERGLGQLGSLGSGNHFLEVQAVSEVHDEIAAKAFGLGP-GQICVMIHSGSRGLGHQI 246
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + MEKAM+R +I DRQLACA S EG+ YL +MAAAAN
Sbjct: 247 CT--------------DHVRAMEKAMRRHSISVPDRQLACAPAGSPEGRAYLAAMAAAAN 292
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+AF T D+ ++YDVSHN+AK E H VDG + L VHRK
Sbjct: 293 YGRANRQLLTEAARRAFRGVCGT-----DLELVYDVSHNLAKIETHRVDGTARRLCVHRK 347
Query: 244 VS----EPSHP 250
+ P HP
Sbjct: 348 GATLALPPRHP 358
>gi|448348744|ref|ZP_21537592.1| hypothetical protein C484_04270 [Natrialba taiwanensis DSM 12281]
gi|445642405|gb|ELY95473.1| hypothetical protein C484_04270 [Natrialba taiwanensis DSM 12281]
Length = 488
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 130 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGADPEK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D G+E Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGEAYGLE-ADQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ F + F+ + + +DMH++YDV+HNIAK E H V G ++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRRVFERVFDRSWEAMDMHLLYDVAHNIAKKETHTVAGDERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|401825221|ref|XP_003886706.1| hypothetical protein EHEL_011020 [Encephalitozoon hellem ATCC
50504]
gi|395459851|gb|AFM97725.1| hypothetical protein EHEL_011020 [Encephalitozoon hellem ATCC
50504]
Length = 477
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 143/256 (55%), Gaps = 30/256 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+GS ++ L L+ G+D+ L+ I ED E+CE G M + D
Sbjct: 131 LFGIIPTGMGSDKRSRISLGTLNSILDQGLDYLLKSKEIPDEDVEYCESNGHM-DGDSRL 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
++ ++K RGL QLGTLG+GNHY E+Q VDE+Y+ A MGI Q+ +MIH+GSRG G
Sbjct: 190 INQKSKGRGLNQLGTLGSGNHYLEVQYVDEVYNAEKAEVMGIRK-DQIVLMIHTGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
H G C D+L++M + QLAC+ +SKE Q+YL SM
Sbjct: 249 H----GVCH----------DSLMKMAGK------NADHSQLACSPYSSKESQEYLLSMGC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR+ +T RQAF K F + DL IYDV HNIAK E H G + +V
Sbjct: 289 AANFAFVNRAVITKKARQAFEKVFPGSRLDL----IYDVCHNIAKVESHRSHGMEYDAIV 344
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 345 HRKGASRAFPPGHPDI 360
>gi|448568288|ref|ZP_21637865.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
lucentense DSM 14919]
gi|448600772|ref|ZP_21656151.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
alexandrinus JCM 10717]
gi|445727238|gb|ELZ78852.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
lucentense DSM 14919]
gi|445734785|gb|ELZ86341.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
alexandrinus JCM 10717]
Length = 486
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 148/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ ++ E A D++ D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDYL---RRIEQEHADLLDDLP--DKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E HMVDG+++ L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHMVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|292656831|ref|YP_003536728.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
volcanii DS2]
gi|448290831|ref|ZP_21481976.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
volcanii DS2]
gi|291371279|gb|ADE03506.1| RNA terminal phosphate cyclase operon orfB homolog, UPF0027 family
[Haloferax volcanii DS2]
gi|445577884|gb|ELY32304.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
volcanii DS2]
Length = 486
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 148/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ ++ E A D++ D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDYL---RRIEQEHADLLDDLP--DKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E HMVDG+++ L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHMVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|449329755|gb|AGE96024.1| hypothetical protein ECU01_1120 [Encephalitozoon cuniculi]
Length = 477
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 138/256 (53%), Gaps = 30/256 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+GS + L LE G+ + L+ I ED E+CE G M D
Sbjct: 131 LFNIIPTGMGSDRRSRIGLDVLNSVLEQGLGYLLKSKEISDEDVEYCESNGCM-AGDSRF 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V ++K +GL QLGTLG+GNHY E+Q VDE+YD A MGI GQ+ VMIH+GSRG G
Sbjct: 190 VGQKSKGKGLNQLGTLGSGNHYLEVQYVDEVYDAEKAGIMGIGK-GQIVVMIHTGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
H G C MK + QLAC+ NSKE Q+YL SM
Sbjct: 249 H----GVCH----------------SSLMKMAGKALDCSQLACSPYNSKESQEYLLSMGC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR+ +T RQAF K F + + ++YDV HNI K E+H V G + +V
Sbjct: 289 AANFAFVNRAMVTEKARQAFGKVFPGS----RLELVYDVCHNIVKIEKHRVHGVEYDAIV 344
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 345 HRKGASRAFPPHHPDI 360
>gi|54295045|ref|YP_127460.1| hypothetical protein lpl2125 [Legionella pneumophila str. Lens]
gi|53754877|emb|CAH16365.1| hypothetical protein lpl2125 [Legionella pneumophila str. Lens]
Length = 476
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 139/254 (54%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+ I + + L++ + G W++++GY A D E E+ G + A P
Sbjct: 123 LFAHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGAIPDC 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 183 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + I+ DR+LACA I+SK G++YL +M A
Sbjct: 242 HQIGT--------------DYLRSMVIESQHYGIKLADRELACAPIHSKLGENYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H VDGK+K L V
Sbjct: 288 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEVDGKKKRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|85691101|ref|XP_965950.1| hypothetical protein ECU01_1120 [Encephalitozoon cuniculi GB-M1]
gi|19068517|emb|CAD24985.1| similarity to HYPOTHETICAL PROTEIN YT6J_CAEEL [Encephalitozoon
cuniculi GB-M1]
Length = 477
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 138/256 (53%), Gaps = 30/256 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+GS + L LE G+ + L+ I ED E+CE G M D
Sbjct: 131 LFNIIPTGMGSDRRSRIGLDVLNSVLEQGLGYLLKSKEISDEDVEYCESNGCM-AGDSRF 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V ++K +GL QLGTLG+GNHY E+Q VDE+YD A MGI GQ+ VMIH+GSRG G
Sbjct: 190 VGQKSKGKGLNQLGTLGSGNHYLEVQYVDEVYDAEKAGIMGIGK-GQIVVMIHTGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
H G C MK + QLAC+ NSKE Q+YL SM
Sbjct: 249 H----GVCH----------------SSLMKMAGKALDCSQLACSPYNSKESQEYLLSMGC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR+ +T RQAF K F + + ++YDV HNI K E+H V G + +V
Sbjct: 289 AANFAFVNRAMVTEKARQAFGKVFPGS----RLELVYDVCHNIVKIEKHRVHGVEYDAIV 344
Query: 241 HRKVSE----PSHPGV 252
HRK + P HP +
Sbjct: 345 HRKGASRAFPPHHPDI 360
>gi|397664638|ref|YP_006506176.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
gi|395128049|emb|CCD06253.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
Length = 476
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 139/254 (54%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+ I + + L++ + G W++++GY A D E E+ G + A P
Sbjct: 123 LFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEAADLERIEDRGCVEGAIPDF 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 183 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTAAALNLHE-GDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + ++ DR+LACA I+SK G++YL +M A
Sbjct: 242 HQIGT--------------DYLRSMVIESQHYGVKLADRELACAPIHSKLGENYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H VDGK+K L V
Sbjct: 288 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEVDGKKKCLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|448578377|ref|ZP_21643812.1| rtcB-like protein [Haloferax larsenii JCM 13917]
gi|445726918|gb|ELZ78534.1| rtcB-like protein [Haloferax larsenii JCM 13917]
Length = 486
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 148/250 (59%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IP G+G G++ +A +++ L GM+W++ GY +D HCE+ G +A P
Sbjct: 128 LFDAIPSGLGGGGVVTGDAETIDDILARGMEWAVDAGYATEDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ ++ E A D++ D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDYL---RRIEKEHADLLDDLP--DKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ ++DM ++YDV+HNIAK E H VDG+ + L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWREMDMRLLYDVAHNIAKKEVHEVDGEDRELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|345864587|ref|ZP_08816786.1| protein RtcB [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124284|gb|EGW54165.1| protein RtcB [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 476
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 139/252 (55%), Gaps = 23/252 (9%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP G+GS G I + R++++ L G W++++GY D EE+G M A+P+ VS +
Sbjct: 127 IPAGLGSTGTIKLTHREMDQMLIGGAAWAVQQGYGSEADLLRTEEHGCMAGANPADVSEK 186
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AK+R ++GTLG+GNHY E+Q+V ++YD A+ + + G++ + IH GSRG GHQ+
Sbjct: 187 AKERQRREMGTLGSGNHYLEVQLVAQVYDAETAAAFDLRE-GEIVISIHCGSRGLGHQIG 245
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T + L M K I DR+LACA I SK GQ YL +M A N
Sbjct: 246 T--------------EFLKFMATKAKDHGIWLPDRELACAPIESKLGQSYLGAMRAGINC 291
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A NR +T L R+ T + ++YDVSHN K E H +DGK+K L VHRK
Sbjct: 292 ALANRQILTHLTREVCDDVLPGT----QLTLLYDVSHNTCKRETHRIDGKEKQLFVHRKG 347
Query: 245 SE----PSHPGV 252
+ P HP +
Sbjct: 348 ATLALGPGHPNL 359
>gi|323137021|ref|ZP_08072101.1| protein of unknown function UPF0027 [Methylocystis sp. ATCC 49242]
gi|322397782|gb|EFY00304.1| protein of unknown function UPF0027 [Methylocystis sp. ATCC 49242]
Length = 476
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 138/243 (56%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+H+P GVGS+G I ++ ++ L G W++ G A+D + EE GR A P
Sbjct: 123 LFEHVPAGVGSEGEIGLDVAEMNAMLLGGAQWAVARGLGRADDLDRIEESGRSAGAAPDA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KR ++GTLG+GNHY E+Q +D+I+D A+ G+ G+ V IH GSRG G
Sbjct: 183 VSEHARKRQRHEMGTLGSGNHYLEVQEIDQIFDPEIAAGYGLVK-GECVVTIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L +M A + I DR+LACA I S+ GQ YL +M +
Sbjct: 242 HQIGT--------------EFLREMALAAESHGIVLPDRELACAPIKSELGQRYLGAMRS 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR + L R+ FA+ F + ++ +++DVSHN K E H VDG+ + L V
Sbjct: 288 AINCALANREIIGHLARETFARFFPHS----ELPLMFDVSHNTCKIENHNVDGETRKLFV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|448606048|ref|ZP_21658627.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739465|gb|ELZ90972.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sulfurifontis ATCC BAA-897]
Length = 486
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +IY A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDIYRDDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK K + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHKDLLDDLPDKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHEVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|345878896|ref|ZP_08830588.1| protein RtcB [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224103|gb|EGV50514.1| protein RtcB [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 491
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 137/250 (54%), Gaps = 23/250 (9%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP G+GS G I + R++++ L G W++ +GY D EE+G M A+P+ VS +
Sbjct: 142 IPAGLGSTGTIKLTHREMDQMLIGGAAWAVEQGYGSEADLLRTEEHGCMAGANPADVSEK 201
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AK+R ++GTLG+GNHY E+Q+V ++YD A+ + + G++ + IH GSRG GHQ+
Sbjct: 202 AKERQRREMGTLGSGNHYLEVQLVAQVYDAETAAAFDLRE-GEIVISIHCGSRGLGHQIG 260
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T + L M K I DR+LACA I SK GQ YL +M A N
Sbjct: 261 T--------------EFLKFMATKAKDHGIWLPDRELACAPIESKLGQSYLGAMRAGINC 306
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A NR +T L R+ T + ++YDVSHN K E H +DGK+K L VHRK
Sbjct: 307 ALANRQILTHLTREVCDDVLPGT----QLTLLYDVSHNTCKRETHRIDGKEKQLFVHRKG 362
Query: 245 SE----PSHP 250
+ P HP
Sbjct: 363 ATLALGPGHP 372
>gi|386392565|ref|ZP_10077346.1| hypothetical protein DesU5LDRAFT_1968 [Desulfovibrio sp. U5L]
gi|385733443|gb|EIG53641.1| hypothetical protein DesU5LDRAFT_1968 [Desulfovibrio sp. U5L]
Length = 476
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 137/254 (53%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ D +P G+G+ G + ++ RD++ L G W++REG+ A D CEE G M ADP+
Sbjct: 123 LSDAVPAGLGAGGRLRLSDRDMDRMLAGGAAWAVREGFGEAGDLPRCEEGGTMPGADPAG 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +A++R +LGTLG+GNHY E+Q V++I+D AS G+ GQV V IH GSRG G
Sbjct: 183 ISAKARERQRDELGTLGSGNHYLEVQHVEKIFDSRTASAYGLRP-GQVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT + + M A + D +LA A I S+ G YL +M A
Sbjct: 242 HQVAT--------------EHMAAMLAAAPGHGLTVADPELAFAPIESQAGVRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A R +T R+ FA F + ++YDVSHN K E H V KTL V
Sbjct: 288 AINCALAGRQIITHHVREVFAALF----PGCRLALLYDVSHNTCKVERHAVGKSVKTLHV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|448361745|ref|ZP_21550358.1| hypothetical protein C481_06816 [Natrialba asiatica DSM 12278]
gi|445649425|gb|ELZ02362.1| hypothetical protein C481_06816 [Natrialba asiatica DSM 12278]
Length = 488
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L G+ +D HCE+ G A+P K
Sbjct: 130 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGANPEK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +I+D G+E Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDIFDDEVGEAYGLE-ADQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ F + F+ + + +DMH++YDV+HNIAK E H V G ++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRRVFERVFDRSWEAMDMHLLYDVAHNIAKKETHTVAGDERDLYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|383786158|ref|YP_005470727.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109005|gb|AFG34608.1| hypothetical protein Ferpe_0469 [Fervidobacterium pennivorans DSM
9078]
Length = 471
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 143/243 (58%), Gaps = 20/243 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ +PVGVG + + D ++ +E G+ + GY ED E+ G + + D S
Sbjct: 119 IYESVPVGVGETSDLRFSKNDFKKIVEQGVRKVIEMGYGTEEDLLRIEDRGTLEDCDFSD 178
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A +RG +LGTLGAGNH+ EIQ+V+E+YD+ AS GI+ G + ++IH+GSRGFG
Sbjct: 179 VSEEAYERGKDELGTLGAGNHFIEIQLVEEVYDEEIASVFGIKK-GDITILIHTGSRGFG 237
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M +K N D+QL A S+ GQ Y +M
Sbjct: 238 HQIAT--------------DYIKYMRDNLKDHNKNLPDKQLINAPFKSEWGQAYYSAMNC 283
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR +T + R+AF +++ ++YDV+HNIAK EE+ +DG+++ ++V
Sbjct: 284 AANYAFANRQIITHMIRKAFKSVVG-----MNVRLVYDVAHNIAKVEEYEIDGRKRKVIV 338
Query: 241 HRK 243
HRK
Sbjct: 339 HRK 341
>gi|448546204|ref|ZP_21626456.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-646]
gi|448548203|ref|ZP_21627547.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-645]
gi|448557390|ref|ZP_21632663.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-644]
gi|445703047|gb|ELZ54983.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-646]
gi|445714285|gb|ELZ66049.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-644]
gi|445714905|gb|ELZ66663.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
sp. ATCC BAA-645]
Length = 486
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATEDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK K + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHKDLLDDLPDKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHEVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|448611883|ref|ZP_21662313.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
gi|445742644|gb|ELZ94138.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
Length = 486
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G++ +A +++ L GM+W+L GY +D HCE+ G +A P
Sbjct: 128 LFEAIPSGLGGGGVVKGDAETIDDILAHGMEWALDAGYATDDDLAHCEDEGFRDDAHPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYRDDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ ++ E A D++ D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDYL---RRIEKEHADLLDDLP--DKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H VDG+ + L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHTVDGEDRELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|448281337|ref|ZP_21472643.1| hypothetical protein C500_02484 [Natrialba magadii ATCC 43099]
gi|445578759|gb|ELY33159.1| hypothetical protein C500_02484 [Natrialba magadii ATCC 43099]
Length = 520
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L G+ +D HCE+ G A P K
Sbjct: 162 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGAKPEK 221
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +I+D G+E+ Q+ V+IH GSRG G
Sbjct: 222 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDIFDPEVGEAFGLEE-DQIVVLIHCGSRGLG 280
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 281 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 326
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + + ++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 327 AINFAWVNRQLIMHRTRQVFERVFDRSWESMEMDLLYDVAHNIAKKEMHEVDGEERELYV 386
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 387 HRKGATRAFP 396
>gi|289580098|ref|YP_003478564.1| hypothetical protein Nmag_0414 [Natrialba magadii ATCC 43099]
gi|289529651|gb|ADD04002.1| protein of unknown function UPF0027 [Natrialba magadii ATCC 43099]
Length = 488
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 147/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L G+ +D HCE+ G A P K
Sbjct: 130 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGAKPEK 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +I+D G+E+ Q+ V+IH GSRG G
Sbjct: 190 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDIFDPEVGEAFGLEE-DQIVVLIHCGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 249 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 294
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F+ + + ++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 295 AINFAWVNRQLIMHRTRQVFERVFDRSWESMEMDLLYDVAHNIAKKEMHEVDGEERELYV 354
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 355 HRKGATRAFP 364
>gi|16081421|ref|NP_393759.1| hypothetical protein Ta0279 [Thermoplasma acidophilum DSM 1728]
gi|10639422|emb|CAC11424.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 466
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 143/250 (57%), Gaps = 23/250 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+ S+ + +++ DL E L G+ W+ +D +H E++G + N+
Sbjct: 120 LFIEIPSGLTSRKGLKVSSSDLNEILRSGLKWAYEHDLATRDDMDHTEDHGSIENSG-EN 178
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A++RG+ Q+GTLGAGNH+ E+Q V +I+D A K GI+ + +V VM+H+GSRG G
Sbjct: 179 VSKAAQQRGMSQIGTLGAGNHFLEVQKVSQIFDYDLAGKFGIK-MNEVTVMVHTGSRGLG 237
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT + Y +++T+D +L A + S G+ Y+ +M +
Sbjct: 238 HQVATDYIRMLREADY----------------SVKTSDPELISAPVRSPIGEKYIDAMRS 281
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR + R F K F TP +IY ++HNIAK E H+VDG+ ++V
Sbjct: 282 AANFAFVNRQIAIYRIRSVFEKHFGVTP-----RLIYSLAHNIAKEENHVVDGESMKVIV 336
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 337 HRKGATRAFP 346
>gi|399576613|ref|ZP_10770368.1| hypothetical protein HSB1_24070 [Halogranum salarium B-1]
gi|399238057|gb|EJN58986.1| hypothetical protein HSB1_24070 [Halogranum salarium B-1]
Length = 492
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 143/250 (57%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ +E L GMDW+L GY +D HCE+ G +ADP
Sbjct: 134 LFANVPSGLGGGGIVEEGIDTVEAILARGMDWALERGYATEDDLAHCEDEGMRPDADPDA 193
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++ G+E+ Q+ V+IH GSRG G
Sbjct: 194 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFRPDVGEAFGLEE-DQIVVLIHCGSRGLG 252
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + D++LA A S+ ++Y +M A
Sbjct: 253 HQ---------TCTDY-----LRRIEKEHADLLADLPDKELAAAPAGSELAEEYYGAMCA 298
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + RQ F + F ++++M ++YDV+HNIAK E H VDG+ + L V
Sbjct: 299 AINFAWVNRQLIMHRTRQVFERVFGRDWEEMEMELLYDVAHNIAKKEIHTVDGEDRELYV 358
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 359 HRKGATRAFP 368
>gi|54298094|ref|YP_124463.1| hypothetical protein lpp2151 [Legionella pneumophila str. Paris]
gi|397667860|ref|YP_006509397.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
gi|53751879|emb|CAH13303.1| hypothetical protein lpp2151 [Legionella pneumophila str. Paris]
gi|395131271|emb|CCD09533.1| replication factor C subunit (activator I) [Legionella pneumophila
subsp. pneumophila]
Length = 476
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 138/254 (54%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+ I + + L++ + G W++++GY D E E+ G + A P
Sbjct: 123 LFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEVADLERIEDRGCVEGAIPDF 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 183 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + I+ DR+LACA I+SK G++YL +M A
Sbjct: 242 HQIGT--------------DYLRSMVIESQHYGIKLADRELACAPIHSKLGENYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H +DGK+K L V
Sbjct: 288 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEIDGKKKRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|392412497|ref|YP_006449104.1| hypothetical protein Desti_4203 [Desulfomonile tiedjei DSM 6799]
gi|390625633|gb|AFM26840.1| hypothetical protein Desti_4203 [Desulfomonile tiedjei DSM 6799]
Length = 482
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 153/250 (61%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
F +P GVGS+G I +N +L + L+ G W++ +G D + E G + ADPS
Sbjct: 125 FFAKVPSGVGSRGGIRLNKSELSKVLKAGAAWAVSQGMGEESDLDRIEAGGALQGADPSV 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA +RG QLGTLG+GNH+ EI +++I+D+ A++ GI QV VM+HSGSRG G
Sbjct: 185 VSDRAFERGKDQLGTLGSGNHFLEIGFIEKIFDEDTAAQWGIVQ-DQVTVMVHSGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+QV C+ D L +M K++ + IE DRQLAC R+++ ++YL +MAA
Sbjct: 244 YQV----CD----------DFLARMVKSVAAEGIELPDRQLACTRLHTPLAREYLGAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+ NR + L R + K +P +L ++YDV HN+AK E H ++G+++ ++V
Sbjct: 290 AANFAFANRQILMHLARTTWEKSLGISPRELQFRLLYDVCHNVAKFEMHTLNGQKRRVMV 349
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 350 HRKGATRAFP 359
>gi|148359741|ref|YP_001250948.1| replication factor C subunit [Legionella pneumophila str. Corby]
gi|296107785|ref|YP_003619486.1| replication factor C subunit [Legionella pneumophila 2300/99 Alcoy]
gi|148281514|gb|ABQ55602.1| replication factor C subunit (activator I) [Legionella pneumophila
str. Corby]
gi|295649687|gb|ADG25534.1| replication factor C subunit [Legionella pneumophila 2300/99 Alcoy]
Length = 476
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 138/254 (54%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F HIP GVGS+ I + + L++ + G W++++GY D E E+ G + A P
Sbjct: 123 LFTHIPAGVGSRSGIHLTIKQLDDMMRGGAQWAVKQGYGEVADLERIEDRGCVEGAIPDF 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKR ++GTLG+GNHY E+Q V +IY A+ + + + G + V IH GSRG G
Sbjct: 183 VSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSDTATALNLHE-GDIVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L M + I+ DR+LACA I+SK G++YL +M A
Sbjct: 242 HQIGT--------------DYLRSMVIESQHYGIKLADRELACAPIHSKLGENYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T R F T DL IYDVSHN K E H +DGK+K L V
Sbjct: 288 GINCALANREIITHFMRNVFQDILPRTQIDL----IYDVSHNTCKEEFHEIDGKKKRLFV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|123474356|ref|XP_001320361.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903165|gb|EAY08138.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 498
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 138/243 (56%), Gaps = 17/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P GV K + DL L G W++ Y ED ++CEE G M AD
Sbjct: 143 IYKNVPCGVCGKKQDFIKMSDLNHILVKGAKWAVENFYGVQEDLDNCEENGCMPGADLKL 202
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S + K G+ QLGTLG+GNHY EIQ + EIYD+ AA + ++ Q+ +MIH GSR G
Sbjct: 203 ISQKVKGSGINQLGTLGSGNHYVEIQRIQEIYDESAAQILNLKK-DQIVIMIHCGSRNIG 261
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
++AT E I M PD + ++ D QL + +SK G Y+ +MA
Sbjct: 262 KRLAT---EYINQMIEENPDEVAKLP-----------DSQLVSSAASSKTGAAYISAMAC 307
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F K +DL + ++YDV+HNIAK E+H+VDG +K +V
Sbjct: 308 AANFAWCNRQIITHFVRESFKKVLGR--NDLKVDLLYDVAHNIAKIEKHIVDGVEKEFIV 365
Query: 241 HRK 243
HRK
Sbjct: 366 HRK 368
>gi|345017194|ref|YP_004819547.1| hypothetical protein Thewi_0832 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032537|gb|AEM78263.1| protein of unknown function UPF0027 [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 487
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 142/248 (57%), Gaps = 20/248 (8%)
Query: 4 HIPVGVGSKGIIPMNARDL-EEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++P G+G KG R + + + G++ ++ G+ D E+ EE GR+ AD S VS
Sbjct: 138 YVPTGIGKKGRHKGITRVIFNDVVHNGVEAVIKAGFGKKSDLEYIEENGRLSGADLSAVS 197
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A++RG QLGTLG GNH+ EIQ VD I D+ A + G+ GQ+ +MIH+GSRGFGHQ
Sbjct: 198 KEARERGEEQLGTLGGGNHFIEIQRVDSILDEKLAKQFGLFK-GQIVIMIHTGSRGFGHQ 256
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+AT D + +A K+ IE ++ LA A I SKEGQ+Y K+MAAA
Sbjct: 257 IAT--------------DYTKILWEAAKKYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAV 302
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA+ NR + F +AF + + + ++YDV+HNIAK E H K LLVHR
Sbjct: 303 NFAFSNRQIIMFDVIRAFEDVLKKSEESMGFQLVYDVAHNIAKWEVH----GGKRLLVHR 358
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 359 KGATRALP 366
>gi|433638733|ref|YP_007284493.1| hypothetical protein Halru_1761 [Halovivax ruber XH-70]
gi|433290537|gb|AGB16360.1| hypothetical protein Halru_1761 [Halovivax ruber XH-70]
Length = 503
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 145/267 (54%), Gaps = 32/267 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L GY +D HCE+ G ADP+
Sbjct: 128 LFANVPSGLGGGGIVEAGIDTIDEILARGVDWALEHGYAVEDDLRHCEDEGVREEADPAM 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D + G+ Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGAAFGLT-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQHHQGLLDQLPDKELAAAPAGSQLAEEYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + R+ F + F+ + D++M ++YDV+HNIAK E H V
Sbjct: 293 AINFAWVNRQLIMHRTREVFERVFDRSWQDMEMELLYDVAHNIAKKETHTVGAASHSADA 352
Query: 232 --------DGKQKTLLVHRKVSEPSHP 250
D ++ L VHRK + + P
Sbjct: 353 ASGAEPRADETERELYVHRKGATRAFP 379
>gi|88813227|ref|ZP_01128467.1| hypothetical protein NB231_02128 [Nitrococcus mobilis Nb-231]
gi|88789549|gb|EAR20676.1| hypothetical protein NB231_02128 [Nitrococcus mobilis Nb-231]
Length = 476
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 135/254 (53%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP GVG G + + ++L+ L G +W++ GY D E EE G M A +
Sbjct: 123 LFERIPCGVGRTGPMRLRRKELDAMLSGGAEWAVSCGYGTRVDLERIEERGCMRGARAEE 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK R Q+GTLG+GNHY E+Q V +++D S G+ G + V IH GSR G
Sbjct: 183 VSAQAKDRQCEQMGTLGSGNHYLEVQHVAKVFDYETGSVFGLSP-GDIVVSIHCGSRALG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L +M A I+ DR+LACA I S GQ YL +M A
Sbjct: 242 HQIGT--------------DFLKKMLAASAEYGIKLPDRELACAPIESPLGQSYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T+L RQ FA ++ ++YDVSHN K E H+VDGK+ L V
Sbjct: 288 GINCALANRQIITYLTRQVFADVLPKA----NLTLLYDVSHNTCKEEVHVVDGKRMPLYV 343
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 344 HRKGATRALGPGHP 357
>gi|145594927|ref|YP_001159224.1| hypothetical protein Strop_2399 [Salinispora tropica CNB-440]
gi|145304264|gb|ABP54846.1| protein of unknown function UPF0027 [Salinispora tropica CNB-440]
Length = 472
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 143/234 (61%), Gaps = 24/234 (10%)
Query: 21 DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN 80
D++ L G ++++ G+ D CE+ G + +ADP VS RA +RG Q+G+LG+GN
Sbjct: 142 DVDGVLRDGSRYAVQRGFGVERDLARCEDQGALGDADPGAVSDRAIERGAKQVGSLGSGN 201
Query: 81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPD 140
H+ E+Q V E+YD+ A G+ GQVCVMIH GSRG GHQ+ C YV
Sbjct: 202 HFLEVQAVTEVYDQRVAEVFGLRP-GQVCVMIHCGSRGLGHQI---------CADYVR-- 249
Query: 141 ALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAF 200
+ME+AM R +I+ DRQLACA ++S EGQ YL +MAAAAN+A NR +T + R F
Sbjct: 250 ---RMERAMPRYDIQVPDRQLACAPVSSPEGQAYLGAMAAAANYARANRQLLTHVARLVF 306
Query: 201 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS----EPSHP 250
+ T LD V+YDVSHN AK E H VDG++++L VHRK + P HP
Sbjct: 307 RR---VTGAGLD--VVYDVSHNQAKIETHGVDGERRSLCVHRKGATRALPPGHP 355
>gi|157363789|ref|YP_001470556.1| hypothetical protein Tlet_0926 [Thermotoga lettingae TMO]
gi|157314393|gb|ABV33492.1| protein of unknown function UPF0027 [Thermotoga lettingae TMO]
Length = 465
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 140/243 (57%), Gaps = 23/243 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVG+ G + +N +DL G W++ +GY D E+ E+ G++ ADP
Sbjct: 116 IYRSVPAGVGASGAVKINKKDLRSICIYGAQWAVDQGYGSKSDLENIEDGGKLSPADPED 175
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RGL +L TLGAGNH+ EIQ V+ I+DK A GI + GQV V IH GSRGFG
Sbjct: 176 VSKKAFERGLDELSTLGAGNHFIEIQKVERIFDKDTADIFGIFE-GQVAVCIHCGSRGFG 234
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M + N D+QL A + GQ Y +M
Sbjct: 235 HQIAT--------------DYIQIMRDNLSSHNKNLPDKQLINAPFSHPIGQKYFSAMNC 280
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR ++++ + AF K F + +M ++YDV+HNIAK EE+ +++ ++V
Sbjct: 281 AANYAFANRQMISYMIQLAFHKTFPSK----NMWLLYDVAHNIAKIEEY----EKRKMIV 332
Query: 241 HRK 243
HRK
Sbjct: 333 HRK 335
>gi|448730418|ref|ZP_21712726.1| hypothetical protein C449_11548 [Halococcus saccharolyticus DSM
5350]
gi|445793586|gb|EMA44158.1| hypothetical protein C449_11548 [Halococcus saccharolyticus DSM
5350]
Length = 500
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 148/265 (55%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ +E LE GMDW+L EGY +D HCE+ GR +ADP
Sbjct: 128 LFANIPSGLGGGGVVESGVDTVEAILERGMDWALEEGYAVEDDIAHCEDEGRRPDADPGV 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++ + A G+ + Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFREDVADAYGLTE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T E + P L Q+ D++LA A S+ DY +M A
Sbjct: 247 HQVCT---EYTREVEQAHPGLLDQLP-----------DKELAAAPAGSQLADDYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH----------- 229
A N+AWVNR + R+ F + F+ + +D++M ++YDV+HNIAK E H
Sbjct: 293 AINYAWVNRQLIMHRTREVFERVFDRSWEDMEMDLLYDVAHNIAKKEVHEVGVGPEGRPA 352
Query: 230 ----MVDGKQKTLLVHRKVSEPSHP 250
VDG+++ L VHRK + + P
Sbjct: 353 GDDAAVDGEERELYVHRKGATRAFP 377
>gi|374340269|ref|YP_005097005.1| hypothetical protein Marpi_1304 [Marinitoga piezophila KA3]
gi|372101803|gb|AEX85707.1| hypothetical protein Marpi_1304 [Marinitoga piezophila KA3]
Length = 459
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 152/250 (60%), Gaps = 20/250 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+++ IPVGVGS+ ++ +++++ L G+ W++ Y AED + E+ G++ AD
Sbjct: 120 VYNEIPVGVGSRTNFKLSVKEMKKILNNGVYWAINNNYGLAEDLYNIEDSGKIKYADADF 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A KRG +LGTLG+GNH+ EIQIV+++++K A + G+ + GQ+ MIHSGSRG G
Sbjct: 180 VSDEAIKRGADELGTLGSGNHFIEIQIVEKVFEKENAERYGLFE-GQIVYMIHSGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT + +F D L K + D+QL A SK GQ+Y +M A
Sbjct: 239 HQVATDYIK-------IFRDNLKDWNKKIP-------DKQLINAPFKSKYGQEYFSAMNA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+VNR M R F F D++ ++YD++HNIAK E+H VDG++K L+V
Sbjct: 285 AANFAFVNRQIMGHKIRNIFKDLF-----DVESKLLYDITHNIAKLEKHNVDGEEKDLIV 339
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 340 HRKGATRAFP 349
>gi|357403645|ref|YP_004915569.1| hypothetical protein MEALZ_0270 [Methylomicrobium alcaliphilum 20Z]
gi|351716310|emb|CCE21970.1| conserved protein of unknown function [Methylomicrobium
alcaliphilum 20Z]
Length = 476
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 137/243 (56%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +P GVGS+G+I +N ++ L G W++ +G+ A D E EE GR+ A+P
Sbjct: 123 LYRSVPAGVGSRGLIHLNHDEMRAMLTGGAQWAVDQGFGEARDLEFTEERGRVDGAEPRD 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA++R ++GTLG+GNHY E+Q V EI+D+ A ++ + + + IH GSRG G
Sbjct: 183 VSPRARERQKDEMGTLGSGNHYLEVQRVVEIFDQEVAEAYRLK-LDAIVISIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M A + +I DR+LACA +NS G+ YL +M A
Sbjct: 242 HQIGT--------------EFLKDMALAASQYHITLPDRELACAPLNSPLGKRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L RQA + F DL +YDVSHN K E H+V G +T+ V
Sbjct: 288 GINCALANRQIITHLTRQAMNEIFPGISIDL----LYDVSHNTCKEERHIVAGSAQTVFV 343
Query: 241 HRK 243
HRK
Sbjct: 344 HRK 346
>gi|20807196|ref|NP_622367.1| hypothetical protein TTE0709 [Thermoanaerobacter tengcongensis MB4]
gi|20515698|gb|AAM23971.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 480
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 145/248 (58%), Gaps = 20/248 (8%)
Query: 4 HIPVGVGSKGIIPMNARDL-EEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++P G+G KG R + ++ + G++ ++ G+ D E+ EE G++ AD S VS
Sbjct: 131 YVPTGIGKKGRHKGITRVIFDDVVHNGVEAVIKAGFGKKSDLEYIEEGGKLEGADISAVS 190
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A++RG QLGTLG GNH+ EIQ V+EI ++ A K G+ GQ+ VMIH+GSRGFGHQ
Sbjct: 191 EEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFK-GQLAVMIHTGSRGFGHQ 249
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+AT D + +A KR IE ++ LA A I SKEGQ+Y K+MAAA
Sbjct: 250 IAT--------------DYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAV 295
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA+ NR + F +AF + +++ ++YDV+HNIAK E H K +LVHR
Sbjct: 296 NFAFSNRQIIMFDVIRAFEDVLKKSEEEMGFKLVYDVAHNIAKWEVH----GGKRMLVHR 351
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 352 KGATRALP 359
>gi|317153510|ref|YP_004121558.1| hypothetical protein Daes_1800 [Desulfovibrio aespoeensis Aspo-2]
gi|316943761|gb|ADU62812.1| protein of unknown function UPF0027 [Desulfovibrio aespoeensis
Aspo-2]
Length = 486
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 134/261 (51%), Gaps = 27/261 (10%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G I + ++ + LE G W++ GY D E++GRM A P
Sbjct: 123 LFHAVPSGVGQGGRIILKGDEMAQMLEGGAAWAVGRGYGLPADLARIEDHGRMPGAMPGH 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RA++R QLGTLG GNHY E+Q ++ I D + G+ + G + IH GSRG G
Sbjct: 183 VSPRARERMRDQLGTLGGGNHYLEVQWIERILDADKGAAFGLRE-GDAVISIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDN-------IETNDRQLACARINSKEGQD 173
HQ+ F D L KA ++ + DR+L CA I+S+ G+
Sbjct: 242 HQIGQD-----------FIDELAPGSKARRKGKAAAPNPYLPVPDRELVCAPIDSEPGRR 290
Query: 174 YLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 233
YL +M A N A NR +T L R FA F DL +YDVSHN + E H+ +G
Sbjct: 291 YLGAMRAGINCALANRQVITHLVRGVFADLFPAARLDL----LYDVSHNTCRAERHLAEG 346
Query: 234 KQKTLLVHRKVSE----PSHP 250
K++TL VHRK + P HP
Sbjct: 347 KEQTLFVHRKGATRALGPGHP 367
>gi|238059208|ref|ZP_04603917.1| LOW QUALITY PROTEIN: hypothetical protein MCAG_00174
[Micromonospora sp. ATCC 39149]
gi|237881019|gb|EEP69847.1| LOW QUALITY PROTEIN: hypothetical protein MCAG_00174
[Micromonospora sp. ATCC 39149]
Length = 355
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 141/233 (60%), Gaps = 24/233 (10%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNH 81
L+ L G +++ G+ D + CE+ G + +ADP +VS RA +RG Q+G+LG+GNH
Sbjct: 26 LDAVLRGGSRYAVERGHGVPRDLDRCEDTGAVDDADPGQVSDRAVQRGRGQVGSLGSGNH 85
Query: 82 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDA 141
+ E+Q VDE++D+ A+ G+ GQV VMIHSGSRG GHQ+ T D
Sbjct: 86 FLEVQAVDEVHDEAVAAAFGLR-AGQVVVMIHSGSRGLGHQICT--------------DH 130
Query: 142 LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFA 201
+ ME++M R IE DRQLACA + S +G+ YL +MAAAAN+A NR +T R+ FA
Sbjct: 131 VRAMERSMPRHGIEVPDRQLACAPVESSQGRAYLGAMAAAANYARANRQLLTAAARRVFA 190
Query: 202 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS----EPSHP 250
+ T LD+ +YDVSHN+AK E H VDG + L VHRK + P HP
Sbjct: 191 R---TAGSGLDL--VYDVSHNLAKIETHAVDGADRRLCVHRKGATRALPPGHP 238
>gi|448378217|ref|ZP_21560691.1| hypothetical protein C479_15647 [Halovivax asiaticus JCM 14624]
gi|445654199|gb|ELZ07053.1| hypothetical protein C479_15647 [Halovivax asiaticus JCM 14624]
Length = 503
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 145/267 (54%), Gaps = 32/267 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+G GI+ ++E L G+DW+L Y +D HCE+ G ADP+
Sbjct: 128 LFANVPSGLGGGGIVEAGIDTIDEILARGVDWALEHDYAVEDDLRHCEDEGVREEADPAA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +++D + G+ + Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGAAFGLTE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQHHQGLLNQLPDKELAAAPAGSQLAEEYYAAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + R+ F + F+ + D++M ++YDV+HNIAK E H +
Sbjct: 293 AINFAWVNRQLIMHRSREVFERVFDRSWQDMEMELLYDVAHNIAKKETHTIGAAAHSADV 352
Query: 232 --------DGKQKTLLVHRKVSEPSHP 250
D ++ L VHRK + + P
Sbjct: 353 ASGADPRADETERELYVHRKGATRAFP 379
>gi|15790456|ref|NP_280280.1| hypothetical protein VNG1454C [Halobacterium sp. NRC-1]
gi|169236192|ref|YP_001689392.1| rtcB-like protein [Halobacterium salinarum R1]
gi|10580950|gb|AAG19760.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727258|emb|CAP14044.1| 3'-5' RNA ligase [Halobacterium salinarum R1]
Length = 500
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 146/265 (55%), Gaps = 31/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++D +P G+G G+ DL+ ALE G+DW + EGY D+ HCE+ G+ L+AD
Sbjct: 128 LYDAVPCGLGGGGVHDGTHADLDAALERGIDWCVEEGYAVPADRRHCEDEGQRLDADLDA 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG Q+G+LG+GNH+ E+Q V ++YD A+ G+ + QV V+IH GSRG G
Sbjct: 188 VSKKARDRGASQMGSLGSGNHFLEVQRVTDVYDDDTAAAFGLAE-DQVVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + +I PD L + ++ LA A S+ Y +M A
Sbjct: 247 HQICSDYLRRIE---QEHPDFLASLP-----------NKDLAAAPAGSELAASYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD--DLDMHVIYDVSHNIAKTEEHMV------- 231
A NFAWVNR +T R+ FA F+ PD L M ++YDVSHNIAK E H V
Sbjct: 293 AINFAWVNRQLITHAVRETFADVFD-APDWEALGMDLLYDVSHNIAKRETHAVVETEDGY 351
Query: 232 ----DGK--QKTLLVHRKVSEPSHP 250
DG+ ++ L VHRK + + P
Sbjct: 352 SLAGDGERVERELFVHRKGATRAFP 376
>gi|374301623|ref|YP_005053262.1| hypothetical protein [Desulfovibrio africanus str. Walvis Bay]
gi|332554559|gb|EGJ51603.1| protein of unknown function UPF0027 [Desulfovibrio africanus str.
Walvis Bay]
Length = 477
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 136/256 (53%), Gaps = 22/256 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVGS G I +N + + L G W++ G+ +D H E++G A+P
Sbjct: 123 LFATIPAGVGSTGAIRLNDDETDAMLARGAAWAVGRGWGRGDDLAHIEDHGTAPGAEPEL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A+KR ++GTLG+GNHY EIQ+V++I D AA G+ +G V V IH GSRG G
Sbjct: 183 VSAEARKRQRDEMGTLGSGNHYLEIQVVEDIIDATAAEAFGLR-LGDVLVAIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D M + I R LACA I S+ G+ YL +M A
Sbjct: 242 HQVAT--------------DYSKLMLAEAPKHKITLPHRDLACAPIRSELGRRYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+AF + F + + + ++YDV+HN + EEH V + L V
Sbjct: 288 GINCALANRQILTHLVREAFERVFRKS---VALPLLYDVAHNTCREEEHRVGPVSRRLYV 344
Query: 241 HRKVS----EPSHPGV 252
HRK + P HP +
Sbjct: 345 HRKGATRALPPGHPAL 360
>gi|448583326|ref|ZP_21646682.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
gibbonsii ATCC 33959]
gi|445729555|gb|ELZ81150.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
gibbonsii ATCC 33959]
Length = 486
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V ++Y + A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYREDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK K E D++LA A S ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHKDLLDELPDKELAAAPAGSALAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H VDG+++ L V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHEVDGEERELYV 352
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 353 HRKGATRAFP 362
>gi|302341702|ref|YP_003806231.1| hypothetical protein Deba_0260 [Desulfarculus baarsii DSM 2075]
gi|301638315|gb|ADK83637.1| protein of unknown function UPF0027 [Desulfarculus baarsii DSM
2075]
Length = 480
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 145/250 (58%), Gaps = 21/250 (8%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP GVG G ++ R L+ L G W++ G+ A D E CE G++ ADP +VS
Sbjct: 129 IPAGVGQGGAKRLDDRQLDRVLTQGAAWAVNNGHGQATDLEFCESNGQIPLADPDQVSTH 188
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A+ RG QLGTLGAGNH+ E+ +V+ + D AA G+ GQ+ + IHSGSRG GHQV
Sbjct: 189 ARNRGRDQLGTLGAGNHFVELGVVELVADADAAQAFGLFP-GQLVLWIHSGSRGLGHQV- 246
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
C+ D L ++ + +D + + D QL A +S GQ YL +MAA+ANF
Sbjct: 247 ---CD----------DYLKRLRQ--DKDAVHSPDSQLIAASPHSPVGQSYLAAMAASANF 291
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A+ NR +T L RQA + +P +L + ++YDV+HNIAK E H V +Q+ L VHRK
Sbjct: 292 AFANRQMLTHLARQAIGQTLQISPANLGLALVYDVAHNIAKLETHTVHNRQRQLWVHRKG 351
Query: 245 SE----PSHP 250
+ P+HP
Sbjct: 352 ATRALGPNHP 361
>gi|222480435|ref|YP_002566672.1| hypothetical protein Hlac_2024 [Halorubrum lacusprofundi ATCC
49239]
gi|222453337|gb|ACM57602.1| protein of unknown function UPF0027 [Halorubrum lacusprofundi ATCC
49239]
Length = 502
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 147/266 (55%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIEGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ + A + G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREEVADEYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L Q+EK E D++LA A S+ +Y +M A
Sbjct: 247 HQ---------TCNDY-----LRQIEKKHGDLLAELPDKELAAAPAGSELADEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR +T R+ F + F+ P +DL+M ++YDV+HNIAK E H
Sbjct: 293 CINFAWVNRQLITHQARKTFGEVFDADPIEDLEMELLYDVAHNIAKKETHEVGVDADGLP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD + L VHRK + + P
Sbjct: 353 AVGDEAVDRADRELYVHRKGATRAFP 378
>gi|298529908|ref|ZP_07017310.1| protein of unknown function UPF0027 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509282|gb|EFI33186.1| protein of unknown function UPF0027 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 474
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 135/254 (53%), Gaps = 23/254 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P G+G+K + ++ RD++ L G W++ GY + D + EE G ADP
Sbjct: 121 LYQNVPAGLGTKKGLKISGRDMDRMLAQGGKWAVGRGYGTSSDLKKTEEGGTASGADPLA 180
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+KR +LGTLG+GNHY E+Q + EI+D AA G+ V + IH GSRG G
Sbjct: 181 VSDKARKRLDRELGTLGSGNHYLEVQAIQEIFDDNAAQAFGLRK-DDVVISIHCGSRGLG 239
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT E I M + R I DR LACA I S GQ YL +M A
Sbjct: 240 HQVAT---EYIRLMV-----------QESARQKIRLPDRDLACAPIFSDTGQQYLGAMRA 285
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N A NR ++ L R++F F D + ++YDV HN + E+H G+ L V
Sbjct: 286 AINCALANRQILSHLARESFETVF----PDARISMLYDVCHNTCREEDHEFQGRSIRLFV 341
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 342 HRKGATRAFGPGHP 355
>gi|448400350|ref|ZP_21571342.1| hypothetical protein C476_11233 [Haloterrigena limicola JCM 13563]
gi|445667373|gb|ELZ20016.1| hypothetical protein C476_11233 [Haloterrigena limicola JCM 13563]
Length = 487
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 146/251 (58%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L GY +D HCE+ G A P K
Sbjct: 128 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGYAVKDDLLHCEDEGMREGAAPEK 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S +AK RG Q+G+LG+GNH+ E+Q V +++D G+E+ Q+ V+IH GSRG G
Sbjct: 188 ISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGEAFGLEE-DQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 247 HQ---------TCNDY-----LRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYGAMNA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV-DGKQKTLL 239
A NFAWVNR + R F + F+ + + ++M ++YDV+HNIAK E H V DG+++ L
Sbjct: 293 AINFAWVNRQLIMHRTRTVFERVFDRSWEAMEMDLLYDVAHNIAKKETHTVGDGEERELY 352
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 353 VHRKGATRAFP 363
>gi|108803329|ref|YP_643266.1| hypothetical protein Rxyl_0480 [Rubrobacter xylanophilus DSM 9941]
gi|108764572|gb|ABG03454.1| protein of unknown function UPF0027 [Rubrobacter xylanophilus DSM
9941]
Length = 484
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 139/245 (56%), Gaps = 25/245 (10%)
Query: 1 MFDHIPVGVG-SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +P GVG + + DL L G W + GY D + E GR+ ADP
Sbjct: 133 LFRSVPSGVGRGRKDFRIGRPDLRRLLVEGPSWLVERGYGEPGDLDGIESRGRLAGADPD 192
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RG PQLGTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IHSGSRG
Sbjct: 193 AVSERAYQRGQPQLGTLGSGNHFLEVQYVDEVYDEEAARAYGLHP-GQVTVLIHSGSRGL 251
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV T E+ +A + IE DRQLA A I+S EG+ YL +M+
Sbjct: 252 GHQVCTEYVERFLQVAPKY--------------GIELVDRQLAAAPIDSPEGRAYLGAMS 297
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQ-FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAANFA+ NR + R+AFA+ F P + V+YD++HN AK EEH + +
Sbjct: 298 AAANFAFANRQLIAHFTREAFARAGFGGRP----LRVLYDLAHNNAKLEEH----GARRV 349
Query: 239 LVHRK 243
LVHRK
Sbjct: 350 LVHRK 354
>gi|320449113|ref|YP_004201209.1| hypothetical protein TSC_c00070 [Thermus scotoductus SA-01]
gi|320149282|gb|ADW20660.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 476
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 145/244 (59%), Gaps = 21/244 (8%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ IP GVGS + + + ++L+E L G W +R G+ + ED E GR+ A+P
Sbjct: 123 LYRLIPSGVGSERKDVRFSKKELKEILREGAGWLIRRGFGYPEDLHFIESEGRLPWANPD 182
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VD+IYD+ AA G+ Q+ V+IH+GSRG
Sbjct: 183 KVSERAFERGAPQIGTLGSGNHFLEVQYVDQIYDEEAAEAFGLFP-NQITVLIHTGSRGL 241
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + K R IE D+QLA A I S EGQDYL++MA
Sbjct: 242 GHQV---------CQDYV-----ERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 287
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANF + NR + R+AF + P + + V+YD++HN AK EEH + +L
Sbjct: 288 AAANFTFANRQLIAHFVREAF-EAVGFPPREHGLRVLYDLAHNNAKFEEH----GGRRVL 342
Query: 240 VHRK 243
VHRK
Sbjct: 343 VHRK 346
>gi|404491553|ref|YP_006715659.1| hypothetical protein Pcar_0019 [Pelobacter carbinolicus DSM 2380]
gi|77543720|gb|ABA87282.1| protein of unknown function UPF0027 [Pelobacter carbinolicus DSM
2380]
Length = 480
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 151/257 (58%), Gaps = 20/257 (7%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F ++P G+GS + + + + L+ G W +++G D H EE G + ADP
Sbjct: 122 LFRNVPSGIGSHRRDLKLTVAQERKVLQQGARWVVKQGMGSERDLRHIEEGGCIEGADPD 181
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+S RA +RGL QLGTLG+GNH+ E+Q+V+EI + A +G+ GQV V IH+GSRG
Sbjct: 182 LLSDRALERGLDQLGTLGSGNHFLEVQMVEEIREPQLAQVLGLFP-GQVTVTIHTGSRGL 240
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+QV C+ D L M +A + I+ DRQL CA +NS G+ YL +MA
Sbjct: 241 GYQV----CD----------DYLRIMLRAAAKYGIKLADRQLCCAPLNSPAGRQYLAAMA 286
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFA+ NR +T R++F + + + L + VIYDV HNIAK E+H+VDG ++ L
Sbjct: 287 CAANFAFANRQLITAWVRESFEQVLGQSAEALRLSVIYDVCHNIAKYEQHVVDGVRRRLC 346
Query: 240 VHRKVS----EPSHPGV 252
VHRK + P HP V
Sbjct: 347 VHRKGATRAFPPGHPDV 363
>gi|424812828|ref|ZP_18238068.1| hypothetical protein J07AB56_13630 [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757050|gb|EGQ40633.1| hypothetical protein J07AB56_13630 [Candidatus Nanosalinarum sp.
J07AB56]
Length = 466
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 144/256 (56%), Gaps = 33/256 (12%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP G+G GI+ + +L L+ G++W + GY D +CEE GR L D K
Sbjct: 115 LYSKIPAGLGGGGIVDTSREELHRVLDEGVEWMVENGYGREGDLRNCEENGR-LPGDHRK 173
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V +AK+RG Q+G+LG+GNH+ E+Q+VDE +D A+ G+E+ GQV VMIHSGSRG G
Sbjct: 174 VPDKAKERGNGQIGSLGSGNHFLEVQVVDETFDADTAAAYGLEE-GQVVVMIHSGSRGLG 232
Query: 121 HQVATGKCEKITCMAYV------FPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDY 174
HQ TC YV +PD +E D L A + + QDY
Sbjct: 233 HQ---------TCTEYVRRFEKEYPDVADGLE-----------DVDLIYAPLQEQPAQDY 272
Query: 175 LKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 234
+M AAAN+AW NR +T+ R++ + FN D ++YDV HNIAK E H VDG
Sbjct: 273 RDAMYAAANYAWANRQGITYGVRESLQELFNA-----DAELVYDVCHNIAKQETHHVDGN 327
Query: 235 QKTLLVHRKVSEPSHP 250
Q+ L+VHRK + + P
Sbjct: 328 QRELMVHRKGATRAFP 343
>gi|384438695|ref|YP_005653419.1| hypothetical protein [Thermus sp. CCB_US3_UF1]
gi|359289828|gb|AEV15345.1| hypothetical protein TCCBUS3UF1_2960 [Thermus sp. CCB_US3_UF1]
Length = 476
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 153/260 (58%), Gaps = 25/260 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +P GVGS + + + ++L+E L+ G W +R+G+ ED E GR+ A+P
Sbjct: 123 LFRLVPSGVGSERKDVRFSKKELKEILKEGAGWLVRKGFGHPEDLRFIESEGRLPWANPD 182
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VD++YD AA G+ Q+ V+IH+GSRG
Sbjct: 183 KVSERAFERGAPQIGTLGSGNHFLEVQYVDQVYDLEAAEAYGLFP-NQIAVLIHTGSRGL 241
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + K R IE D+QLA A I S EG+DYL++MA
Sbjct: 242 GHQV---------CQDYV-----ERFLKVAPRYGIELVDKQLAAAPIRSPEGEDYLQAMA 287
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF + TP + + V+YD++HN AK EEH + +L
Sbjct: 288 AAANFAFANRQLIAHFVREAF-EAVGFTPREHGLRVLYDLAHNNAKFEEH----GGRRVL 342
Query: 240 VHRKVSE----PSHPGVSRN 255
VHRK + P +P + R
Sbjct: 343 VHRKGATRAFGPGYPEIPRE 362
>gi|406989269|gb|EKE09064.1| hypothetical protein ACD_16C00216G0003 [uncultured bacterium]
Length = 477
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 132/239 (55%), Gaps = 18/239 (7%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP G+G G I +L+E L G W++ +GY ED E EE G M + P VS +
Sbjct: 127 IPAGMGRGGRIKFTFSELDEMLVGGAKWAIAQGYGEMEDLERIEEKGCMQGSIPQNVSDK 186
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AKKR ++GTLG+GNHY E+Q V +IY + A +GI+ +GQ+ V IH GSRG GHQ+
Sbjct: 187 AKKRQQDEMGTLGSGNHYLEVQEVQKIYQENIAELLGIK-LGQIVVSIHCGSRGLGHQIG 245
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T + L +M I+ D +LACA INS GQ YL +M A N
Sbjct: 246 T--------------EYLREMLLKADEYKIKLPDWELACAPINSPLGQQYLGAMRAGINC 291
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A NR +T L R+ + + F P + ++YDVSHN K EE+ ++G K L VHRK
Sbjct: 292 ALANRQILTHLLRKVWNETF---PQQSVLKLLYDVSHNTCKAEEYHLEGHVKKLYVHRK 347
>gi|108758274|ref|YP_633573.1| hypothetical protein MXAN_5426 [Myxococcus xanthus DK 1622]
gi|108462154|gb|ABF87339.1| conserved hypothetical protein, UPF0027 family [Myxococcus xanthus
DK 1622]
Length = 497
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 146/251 (58%), Gaps = 25/251 (9%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLRE-GYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP G G G + + ++ L G+ + + G ED ++ E G + AD +KVS+
Sbjct: 148 IPTGFGRHGRLSLAPEQMDRVLTEGVPYLVDVLGLGTPEDVDYLEARGCLDGADTAKVSV 207
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA++RG QLGTLG GNH+ E+Q V+ + D AA +G+ + GQ+ V+IH+GSRG GHQV
Sbjct: 208 RAQERGHDQLGTLGGGNHFLEVQRVERVLDSEAAPALGLFE-GQLTVLIHTGSRGLGHQV 266
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T DA+ M++A+ R+ I+ DRQLACA ++S EGQDY +M AAAN
Sbjct: 267 CT--------------DAVRTMDRALAREGIQLVDRQLACAPLSSAEGQDYFAAMCAAAN 312
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FAW NR +T+ R+ F + F ++YDV+HNIAK E H G Q+ L VHRK
Sbjct: 313 FAWANRQVLTYRVREVFRRWFGDRSAAWP-RIVYDVAHNIAKLEPH---GGQR-LCVHRK 367
Query: 244 VSE----PSHP 250
+ P HP
Sbjct: 368 GATRAFGPGHP 378
>gi|328949730|ref|YP_004367065.1| hypothetical protein Marky_0194 [Marinithermus hydrothermalis DSM
14884]
gi|328450054|gb|AEB10955.1| protein of unknown function UPF0027 [Marinithermus hydrothermalis
DSM 14884]
Length = 479
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 146/244 (59%), Gaps = 21/244 (8%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + +DL+ L G + +G+ A D E E GR+ ADP
Sbjct: 126 LYRRVPAGVGSARRDVRWSPKDLKTVLREGARALVAQGFGEAADLERIESGGRLPLADPD 185
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+VS RA +RG PQLGTLG+GNH+ E+Q VDE+YD AA G+ VGQV V+IH+GSRG
Sbjct: 186 RVSARALERGGPQLGTLGSGNHFLEVQYVDEVYDPEAAEAYGLW-VGQVTVLIHTGSRGL 244
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + +A +R IE DRQLA A I S EGQDYL +MA
Sbjct: 245 GHQV---------CQDYV-----ERFLQAARRYGIELVDRQLAAAPIESPEGQDYLHAMA 290
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR +T R AF + P D + V+YD++HN AK EE+ + +L
Sbjct: 291 AAANFAFANRQLITHNVRLAF-EDAGFLPRDHQLRVLYDLAHNNAKFEEY----AGRRVL 345
Query: 240 VHRK 243
VHRK
Sbjct: 346 VHRK 349
>gi|338730199|ref|YP_004659591.1| hypothetical protein Theth_0400 [Thermotoga thermarum DSM 5069]
gi|335364550|gb|AEH50495.1| protein of unknown function UPF0027 [Thermotoga thermarum DSM 5069]
Length = 465
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 139/243 (57%), Gaps = 23/243 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD +PVGVG++G + ++ + L+E E+G W++ GY ED + E+ G + A+P
Sbjct: 116 IFDSVPVGVGARGAVEIDKKTLKEICELGARWAVENGYGSKEDLQRIEDGGTVGPANPDD 175
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG +L TLGAGNH+ EIQ V+EIYD+ A + G+ QV +H GSRGFG
Sbjct: 176 VSDKAYERGFDELSTLGAGNHFIEIQKVEEIYDENVAKEFGLFQ-NQVVFSVHCGSRGFG 234
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M + N D+QL A N GQ Y +M
Sbjct: 235 HQIAT--------------DYIQIMRDKLADHNKNLPDKQLINAPFNHPIGQKYFSAMNC 280
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR + F+ +A K F ++ ++YDV+HNIAK E + +G++ L++
Sbjct: 281 AANYAFANRQMIGFMLTKAARKVFPKA----EVTLLYDVAHNIAKLEVY--NGRK--LII 332
Query: 241 HRK 243
HRK
Sbjct: 333 HRK 335
>gi|330468161|ref|YP_004405904.1| hypothetical protein VAB18032_21020 [Verrucosispora maris
AB-18-032]
gi|328811132|gb|AEB45304.1| hypothetical protein VAB18032_21020 [Verrucosispora maris
AB-18-032]
Length = 472
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 145/250 (58%), Gaps = 25/250 (10%)
Query: 6 PVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
P G+GS + + RD L+ L G ++++ G+ D CE+YG + +ADP++VS R
Sbjct: 126 PRGMGSGAVWQLTGRDELDAVLRGGSRYAVQRGFGIERDLLRCEDYGAVHDADPAQVSDR 185
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A +RG Q+G+LG+GNH+ E+Q VD++YD A G+ QVCVMIH GSRG GHQ+
Sbjct: 186 AIERGAHQVGSLGSGNHFLEVQAVDQVYDVPVAEAFGLRP-DQVCVMIHCGSRGLGHQIC 244
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T D + ME+ M I+ DRQLACA + S G+ YL +MAAAAN+
Sbjct: 245 T--------------DHVRAMEQVMGSHGIQVPDRQLACAPVASAAGRAYLGAMAAAANY 290
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
A NR + + F ++ T LD+ +YDVSHN+AK EEH VDG + L VHRK
Sbjct: 291 ARANRQLLAHATSRIFERE---TGRRLDL--VYDVSHNLAKIEEHAVDGAVRRLCVHRKG 345
Query: 245 S----EPSHP 250
+ P HP
Sbjct: 346 ATRALPPGHP 355
>gi|328952467|ref|YP_004369801.1| hypothetical protein Desac_0741 [Desulfobacca acetoxidans DSM
11109]
gi|328452791|gb|AEB08620.1| protein of unknown function UPF0027 [Desulfobacca acetoxidans DSM
11109]
Length = 482
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 149/251 (59%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +IP G+GS+ + L++ L G W+++ G+ A+D H E G + ADP
Sbjct: 124 LFSNIPSGLGSRRRDFKLAPPTLKDVLRYGAAWAVKNGFGNADDLLHIEAGGCIKGADPE 183
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+S +A +RG QLGTLG+GNH+ EI V EI+D+ A +G+ + QV V+IH+GSRG
Sbjct: 184 LISGQALERGHDQLGTLGSGNHFTEIGYVQEIFDETLARALGVF-LDQVTVIIHTGSRGL 242
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C+ D + ++ +A + + DRQL CA I S EG++YL +MA
Sbjct: 243 GHQV----CD----------DHIKKLLQASTKYGFDLPDRQLCCAPIQSPEGEEYLAAMA 288
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR +T R+ F + P L + ++YDV+HNIAK E H V+G+ + L
Sbjct: 289 AAANFAFANRQIITHWVRETFQQVLGLGPKALGLELVYDVAHNIAKIETHTVNGRPQKLC 348
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 349 VHRKGATRAFP 359
>gi|436842327|ref|YP_007326705.1| tRNA-splicing ligase RtcB [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171233|emb|CCO24604.1| tRNA-splicing ligase RtcB [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 475
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 130/243 (53%), Gaps = 19/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G G G I ++ ++E L G W + ED E GR A PSK
Sbjct: 122 LFKKIPAGTGVGGAIHLDGNLMDEMLSGGAAWVVGRKMGRPEDLGRIEGNGRNEFAAPSK 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+R + QLG+LG+GNHY E+Q V++I+D A+ G+E V V V IH GSRG G
Sbjct: 182 VSAKAKQRMINQLGSLGSGNHYLEVQYVEKIFDNEKAAGFGVE-VDDVVVSIHCGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A D L M A I + +ACA INS+ G+DY +M A
Sbjct: 241 HQIAK--------------DYLPLMVDAAPGFGINLPSKDIACAPINSQLGKDYWGAMGA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR +T L R+ FA+ D+ +IYDVSHN + E+ ++G+ KTL +
Sbjct: 287 GINCALANRQVLTHLVRECFAEILPQA----DLKLIYDVSHNTCQKEKFNINGRTKTLYI 342
Query: 241 HRK 243
HRK
Sbjct: 343 HRK 345
>gi|317122891|ref|YP_004102894.1| hypothetical protein [Thermaerobacter marianensis DSM 12885]
gi|315592871|gb|ADU52167.1| protein of unknown function UPF0027 [Thermaerobacter marianensis
DSM 12885]
Length = 478
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 148/257 (57%), Gaps = 26/257 (10%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +P GVGS + + + A D L G W++ G +D E E G + A+P
Sbjct: 126 LFRLVPAGVGSERRELRIGAADWPHLLTRGARWAVERGLGDPDDLEFIESTGALPGAEPD 185
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+VS RA +RG QLGTLG+GNH+ E+Q V+ +YD AA G+ GQV V+IH+GSRG
Sbjct: 186 RVSARALERGGSQLGTLGSGNHFLEVQYVEHVYDPEAAEVFGLFP-GQVTVLIHTGSRGL 244
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C+ D++ +M A +R IE DRQLA A I S EGQ YL +MA
Sbjct: 245 GHQV----CQ----------DSVDRMLAAARRHGIELPDRQLAAAPIESPEGQAYLGAMA 290
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR +T R+AFA+ F P + V+YD++HN AK EEH + +L
Sbjct: 291 AAANFAFANRQVITAYAREAFARVFG--PGSSRLRVLYDLAHNNAKWEEH----GGRRVL 344
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP V
Sbjct: 345 VHRKGATRAFGPGHPDV 361
>gi|406908164|gb|EKD48755.1| hypothetical protein ACD_64C00148G0002 [uncultured bacterium]
Length = 486
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 139/243 (57%), Gaps = 18/243 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G + N D++ L+ G L GY ED CEE G M+ ADP
Sbjct: 131 LFHKIPSGVGRGGALDFNQEDIDAILKQGAPRMLELGYGTFEDIALCEEQGHMIEADPFL 190
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S AK+RG Q+GTLG+GNH+ E+Q+V+++Y++ A G+E V VMIH GSRG G
Sbjct: 191 ISKTAKERGRDQIGTLGSGNHFLEVQVVEQLYNEGIAQTFGLEK-DMVTVMIHCGSRGLG 249
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC YV M K + + DR+L A S EGQ Y K+MAA
Sbjct: 250 HQ---------TCTDYVR-----MMMKKLPEWGYKLPDRELIYAPFRSPEGQAYFKAMAA 295
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR +T R+AF + + + ++YD+SHN+ K E+HMV G +K L++
Sbjct: 296 AANYAWANRHMITHWVREAFQEIIGS---QAVVSMVYDISHNLGKVEKHMVHGSEKELVL 352
Query: 241 HRK 243
HRK
Sbjct: 353 HRK 355
>gi|254478891|ref|ZP_05092254.1| Uncharacterized protein family UPF0027 [Carboxydibrachium pacificum
DSM 12653]
gi|214035157|gb|EEB75868.1| Uncharacterized protein family UPF0027 [Carboxydibrachium pacificum
DSM 12653]
Length = 413
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 135/229 (58%), Gaps = 19/229 (8%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNH 81
++ + G++ ++ G+ D E+ EE G++ AD S VS A++RG QLGTLG GNH
Sbjct: 83 FDDVVHNGVEAVIKAGFGKKSDLEYIEEGGKLEGADISAVSEEAQERGEEQLGTLGGGNH 142
Query: 82 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDA 141
+ EIQ V+EI ++ A K G+ GQ+ VMIH+GSRGFGHQ+AT D
Sbjct: 143 FIEIQKVEEILEENLAEKFGLFK-GQLAVMIHTGSRGFGHQIAT--------------DY 187
Query: 142 LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFA 201
+ +A K+ IE ++ LA A I SKEGQ+Y K+MAAA NFA+ NR + F +AF
Sbjct: 188 TKILWEAAKKYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFE 247
Query: 202 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ +++ ++YDV+HNIAK E H K +LVHRK + + P
Sbjct: 248 DVLKKSEEEMGFKLVYDVAHNIAKWEVH----GGKRMLVHRKGATRALP 292
>gi|448358941|ref|ZP_21547614.1| hypothetical protein C482_13475 [Natrialba chahannaoensis JCM
10990]
gi|445644319|gb|ELY97334.1| hypothetical protein C482_13475 [Natrialba chahannaoensis JCM
10990]
Length = 533
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 148/265 (55%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IP G+G G++ ++E L G+DW+L G+ +D HCE+ G ADP K
Sbjct: 160 LFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMREGADPEK 219
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +I+D G+E+ Q+ V+IH GSRG G
Sbjct: 220 VSQKAKDRGKNQIGSLGSGNHFLEVQRVTDIFDTEVGEAFGLEE-DQIVVLIHCGSRGLG 278
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++E+ + + D++LA A S+ +DY +M A
Sbjct: 279 HQ---------TCNDY-----LRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNA 324
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + RQ F + F+ + + ++M ++YDV+HNIAK E H V
Sbjct: 325 AINFAWVNRQLIMHRTRQVFERVFDRSWESMEMELLYDVAHNIAKKETHTVGVGPEGRPV 384
Query: 232 -DG-----KQKTLLVHRKVSEPSHP 250
DG +++ L VHRK + + P
Sbjct: 385 RDGEAVEREERELYVHRKGATRAFP 409
>gi|303388185|ref|XP_003072327.1| RtcB-like protein [Encephalitozoon intestinalis ATCC 50506]
gi|303301466|gb|ADM10967.1| RtcB-like protein [Encephalitozoon intestinalis ATCC 50506]
Length = 477
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 142/250 (56%), Gaps = 26/250 (10%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP GVG+ + L L++G+ L+ I ED E+CE G M + +
Sbjct: 131 LFNIIPTGVGNDKGSRIEMSTLNSILDLGLSHLLKSKEICDEDVEYCESRGYM-DGNSRL 189
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ ++K RGL QLGTLG+GNHY E+Q VDE+YD A MGI GQ+ VMIH+GSRG G
Sbjct: 190 IGQKSKGRGLNQLGTLGSGNHYLEVQYVDEVYDTEKAEIMGIRK-GQIIVMIHTGSRGLG 248
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
H V K+ MA PD QLAC+R NS+E Q+YL SM
Sbjct: 249 HGVCHNSLMKMAGMA---PDY-----------------GQLACSRFNSEESQEYLLSMGC 288
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+ NR+ +T R+AF K F + + +IYDV HNIAK E+H V GK+ +LV
Sbjct: 289 AANFAFANRAMITKSARKAFEKVFPGS----RLELIYDVCHNIAKKEKHRVHGKEYDVLV 344
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 345 HRKGASRAFP 354
>gi|354613308|ref|ZP_09031233.1| protein of unknown function UPF0027 [Saccharomonospora
paurometabolica YIM 90007]
gi|353222350|gb|EHB86663.1| protein of unknown function UPF0027 [Saccharomonospora
paurometabolica YIM 90007]
Length = 496
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 142/267 (53%), Gaps = 41/267 (15%)
Query: 5 IPVGVGSKGIIPM-NARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP G G + P+ + R L+ L G + +G+ A+D CE++GR+ ADP +V
Sbjct: 132 IPRGAGRGAVRPLAHRRGLDRILTGGARELVEQGHGTADDLHRCEDHGRVAGADPHQVGD 191
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL QLG+LG+GNH+ E+Q V+E++D A G+ GQVCVMIH GSRG GHQV
Sbjct: 192 RAGERGLHQLGSLGSGNHFLEVQAVEEVFDSDVARVFGLRR-GQVCVMIHCGSRGLGHQV 250
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + +E+AM R I DRQLACA + S+ G YL +MAAAAN
Sbjct: 251 CT--------------DHVRVLEQAMPRHGIHVPDRQLACAPVESEPGHAYLGAMAAAAN 296
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV------------ 231
+A NR + + F + D+ ++YDVSHN+AK E H V
Sbjct: 297 YALANRHMLGVAADRVFRAETGR-----DLRLVYDVSHNLAKLERHAVPDGAVTDGAGGT 351
Query: 232 ----DGKQKTLLVHRKVS----EPSHP 250
G + L VHRK + P HP
Sbjct: 352 GRDDPGASRRLCVHRKGATRAWPPGHP 378
>gi|78357132|ref|YP_388581.1| hypothetical protein [Desulfovibrio alaskensis G20]
gi|78219537|gb|ABB38886.1| protein of unknown function UPF0027 [Desulfovibrio alaskensis G20]
Length = 478
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 137/250 (54%), Gaps = 20/250 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+ + +NA ++++ L G W++R G ED H EE G + AD ++
Sbjct: 127 LFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAVRNGMGEKEDLWHTEENGCVAGADAAQ 186
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A++R QLGTLG+GNHY EIQIVD I+D AA+ G+ + Q+ + IHSGSRG G
Sbjct: 187 VSTEARQRLTGQLGTLGSGNHYLEIQIVDSIHDTAAAAHFGLAE-NQIAISIHSGSRGTG 245
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + M+ A+ D D LA A + S G+ YL +M A
Sbjct: 246 HQIAT--------------DYIKAMQNALP-DGHPAPDPSLAYAPLTSDLGRRYLAAMKA 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
N A NR ++ + R+ F + F + + +YDVSHN E H+++G+ + L V
Sbjct: 291 GRNCALANRQTIAHMVRKTFLRLFPSC----RITQLYDVSHNTCNEEHHVIEGQSRRLFV 346
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 347 HRKGATRALP 356
>gi|307719286|ref|YP_003874818.1| hypothetical protein STHERM_c16050 [Spirochaeta thermophila DSM
6192]
gi|306533011|gb|ADN02545.1| hypothetical protein STHERM_c16050 [Spirochaeta thermophila DSM
6192]
Length = 477
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P G+GS+G+ + ++ A+ G+ W+L +G ED E EE G + +ADP
Sbjct: 120 LFATVPAGLGSRGLEKFSHKEARRAMRKGLGWALEKGMAMEEDLEATEEEGCLKDADPQL 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A RG + GTLG+GNH+ EI +V++++D A +G+ + GQV + IH+GSRG G
Sbjct: 180 VSDEALDRGREEFGTLGSGNHFLEIDVVEKVFDPKKAQALGLFE-GQVVIWIHTGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A EK M M+ I +R + + + Q YL +MAA
Sbjct: 239 HQIAMDYMEK--------------MRPRMESYGIPLFERDFVSLPVKAPQSQAYLGAMAA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR +T R+AF++ F D+L + ++YDV+HNIAK E + VDG ++ LLV
Sbjct: 285 AANFAWVNRQLITHRVREAFSRVFRRPGDELGLFLLYDVAHNIAKYEVYKVDGAERMLLV 344
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 345 HRKGATRAFP 354
>gi|448499735|ref|ZP_21611435.1| hypothetical protein C464_05073 [Halorubrum coriense DSM 10284]
gi|445697200|gb|ELZ49272.1| hypothetical protein C464_05073 [Halorubrum coriense DSM 10284]
Length = 979
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 145/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ A +E ALE G++W++ GY D HCE+ GR +A P
Sbjct: 605 LFEAVPSGLGGGGVVKGTADAVEGALERGVEWAVEAGYGIESDLAHCEDEGRRPDARPEH 664
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG G
Sbjct: 665 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFRGDVAEAYGLEEDG-IVVLIHCGSRGLG 723
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + D++LA A S+ ++Y +M A
Sbjct: 724 HQ---------TCNDY-----LRRIEKEHGDLLADLPDKELAAAPAGSELAEEYYGAMGA 769
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR +T R+ F + F+ P DDL M ++YDV+HNIAK E H
Sbjct: 770 CINFAWVNRQLITHQVRETFGEVFDADPIDDLGMELLYDVAHNIAKKETHEVGVDAEGRP 829
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD ++ L VHRK + + P
Sbjct: 830 AVGDAAVDRAERELYVHRKGATRAFP 855
>gi|385809832|ref|YP_005846228.1| hypothetical protein IALB_1250 [Ignavibacterium album JCM 16511]
gi|383801880|gb|AFH48960.1| Hypothetical protein IALB_1250 [Ignavibacterium album JCM 16511]
Length = 484
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 145/251 (57%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEA-LEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
+F +IP GVG+ G I ++ + LE G W++ D + EE G + NAD S
Sbjct: 126 LFQNIPTGVGASGAIKKLSKSDLKKILEKGSVWAVENNLGTQSDIQFTEESGTLKNADFS 185
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
VS RA +RG Q GTLG+GNH+ E+ +V+EIY+ A G+ GQV + IH+GSRG
Sbjct: 186 VVSERALERGADQAGTLGSGNHFLEVDVVEEIYEPKVAEVFGLFK-GQVVIQIHTGSRGL 244
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G+QV C+ D L + KA ++ + D+QLACA I S+EGQ YL +M
Sbjct: 245 GYQV----CD----------DYLKVLLKASEKYGFKLPDKQLACAPIKSQEGQAYLAAMQ 290
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFAW NR + L +++F + F+ DL H++YDV HNIAK E+H + K +
Sbjct: 291 AAANFAWNNRQVIMHLAKKSFLETFDMKESDLGFHLVYDVCHNIAKIEKHQIGNVIKEVC 350
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 351 VHRKGATRAFP 361
>gi|448589678|ref|ZP_21649837.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
gi|445736106|gb|ELZ87654.1| rtcB-like protein [Haloferax elongans ATCC BAA-1513]
Length = 487
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 139/243 (57%), Gaps = 20/243 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP G+G + + D+ LE G++W L EG+ D EHCEE GR L DP+
Sbjct: 135 LFQTIPTGLGPGSSLDTDISDVRGVLETGVEWLLNEGHARKADLEHCEENGR-LPGDPNA 193
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V A KRG+ Q+G+LG+GNH+ E+Q V E+YD AA+ GI D+ ++ VMIH+GSRG G
Sbjct: 194 VPTEALKRGVDQVGSLGSGNHFLEVQRVSEVYDSAAAAAFGI-DLDEIVVMIHAGSRGLG 252
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ + E+A + QL A ++ + +Y +M A
Sbjct: 253 HQ---------TCSHYID-----EFERAYPDLAESLPNEQLVYAPLSDRLAGEYRSAMNA 298
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR MT R+ F+ F ++ D+ ++YDV HNIA E H V ++TLLV
Sbjct: 299 AANFAWANRQVMTQAVREVFSDLF----EEADVQLVYDVGHNIATEEHHAVGDDEQTLLV 354
Query: 241 HRK 243
HRK
Sbjct: 355 HRK 357
>gi|383764823|ref|YP_005443805.1| hypothetical protein CLDAP_38680 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381385091|dbj|BAM01908.1| hypothetical protein CLDAP_38680 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 484
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 146/242 (60%), Gaps = 17/242 (7%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+ P GVGS+G++ + +L + L G W+L+ GY ED E EE GR+ +ADP++VS
Sbjct: 128 YCPSGVGSEGVVRVQVEELNKILREGARWALKHGYATEEDLERTEEGGRLEDADPAQVSE 187
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RAK+RG Q+G+LGAGNH+ E+++V++I+ AA MG+++ G + V IH GSRG GHQV
Sbjct: 188 RAKQRGREQIGSLGAGNHFIEVEVVEQIFHPEAARAMGLQE-GCLAVQIHCGSRGLGHQV 246
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + + A+ + I DR+L CA ++S EG+ Y+ +M AAAN
Sbjct: 247 CT--------------DYVQSFQHAVHKYGIHLPDRELVCAPMDSPEGKAYMAAMRAAAN 292
Query: 184 FAWVNRSSMTFLCRQAFAKQF--NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
FA+ NR + R+AF + F + + +YD++HN+ K E H +G++ + VH
Sbjct: 293 FAFANRQLLAHSARRAFEETFAGRFNKKEWRLRQVYDIAHNMGKLETHEREGRRLRVCVH 352
Query: 242 RK 243
RK
Sbjct: 353 RK 354
>gi|410697846|gb|AFV76914.1| hypothetical protein Theos_1904 [Thermus oshimai JL-2]
Length = 959
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 109/257 (42%), Positives = 149/257 (57%), Gaps = 25/257 (9%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L E L+ G + +R G+ + ED E GR+ A+P
Sbjct: 606 LYRLVPSGVGSERKDVRFSKRELREILKEGAGFLIRRGFGYPEDLRFIESEGRLPWANPD 665
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+VS RA +RG PQ+GTLG+GNH+ E+Q VDEIYD AA G+ QV V+IH+GSRG
Sbjct: 666 QVSERAFERGAPQIGTLGSGNHFLEVQYVDEIYDPEAAEAYGLFP-NQVTVLIHTGSRGL 724
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV C YV + K R IE D+QLA A I S EG+ YL++MA
Sbjct: 725 GHQV---------CQDYV-----ERFLKVAPRYGIELVDKQLAAAPIKSPEGEAYLQAMA 770
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF + P D + V+YD++HN AK EEH + +L
Sbjct: 771 AAANFAFANRQLIAHFVREAF-EAVGFAPRDHGLRVLYDLAHNNAKFEEHF----GRRVL 825
Query: 240 VHRKVSE----PSHPGV 252
VHRK + P HP +
Sbjct: 826 VHRKGATRAFGPGHPEI 842
>gi|448431416|ref|ZP_21585083.1| hypothetical protein C472_02369 [Halorubrum tebenquichense DSM
14210]
gi|445687678|gb|ELZ39954.1| hypothetical protein C472_02369 [Halorubrum tebenquichense DSM
14210]
Length = 502
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 149/266 (56%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I A +E ALE G++W++ EGY D CE+ GR L+A P
Sbjct: 128 LFEAIPSGLGGGGVIGGTADAIEGALERGVEWAVEEGYGVESDLARCEDEGRRLDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ + A++ G+ + G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREDVAAEYGLREDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ ++ E D++ D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDYL---RRIEREHGDLLDDLP--DKELAAAPAGSELAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAW NR +T R+ F + F+ P DDL M ++YDV+HNIAK E H
Sbjct: 293 CINFAWANRQLITHQARETFGEVFDADPIDDLGMELLYDVAHNIAKKETHEIGVDADGNP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
+ D +++ L VHRK + + P
Sbjct: 353 AVGDAVADREERELYVHRKGATRAFP 378
>gi|448425570|ref|ZP_21582900.1| hypothetical protein C473_07814 [Halorubrum terrestre JCM 10247]
gi|445680641|gb|ELZ33084.1| hypothetical protein C473_07814 [Halorubrum terrestre JCM 10247]
Length = 502
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 146/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFRADVAESYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L Q+EK E D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRQIEKEHGDLLDELPDKELAAAPAGSELAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR +T R+ F + F+ P +DL M ++YDV+HNIAK E H
Sbjct: 293 CINFAWVNRQLITHQARKTFGEVFDADPIEDLGMELLYDVAHNIAKKETHEVGVDAEGRP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD ++ L VHRK + + P
Sbjct: 353 AVGDEAVDRAERELYVHRKGATRAFP 378
>gi|448485198|ref|ZP_21606506.1| hypothetical protein C462_14043 [Halorubrum arcis JCM 13916]
gi|448504848|ref|ZP_21614142.1| hypothetical protein C465_01264 [Halorubrum distributum JCM 9100]
gi|448518729|ref|ZP_21617736.1| hypothetical protein C466_03582 [Halorubrum distributum JCM 10118]
gi|445701544|gb|ELZ53521.1| hypothetical protein C465_01264 [Halorubrum distributum JCM 9100]
gi|445704662|gb|ELZ56572.1| hypothetical protein C466_03582 [Halorubrum distributum JCM 10118]
gi|445818543|gb|EMA68398.1| hypothetical protein C462_14043 [Halorubrum arcis JCM 13916]
Length = 502
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 146/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFRADVAESYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L Q+EK E D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRQIEKEHGDLLDELPDKELAAAPAGSELAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR +T R+ F + F+ P +DL M ++YDV+HNIAK E H
Sbjct: 293 CINFAWVNRQLITHQARKTFGEVFDADPIEDLGMELLYDVAHNIAKKETHEVGVDAEGRP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD ++ L VHRK + + P
Sbjct: 353 AVGDEAVDRAERELYVHRKGATRAFP 378
>gi|386347393|ref|YP_006045642.1| hypothetical protein [Spirochaeta thermophila DSM 6578]
gi|339412360|gb|AEJ61925.1| protein of unknown function UPF0027 [Spirochaeta thermophila DSM
6578]
Length = 477
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 146/250 (58%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P G+GS+G+ + ++ A++ G+ W+L +G ED E EE G + +ADP
Sbjct: 120 LFATVPAGLGSRGLEKFSHKEARRAMKKGLGWALEKGMAVEEDLEATEEEGCLRDADPQL 179
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS A RG + GTLG+GNH+ EI +V++++D A +G+ + GQV + IH+GSRG G
Sbjct: 180 VSDEALDRGREEFGTLGSGNHFLEIDVVEKVFDPQKAKALGLFE-GQVVIWIHTGSRGLG 238
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+A EK M M+ I +R + + + Q YL +MAA
Sbjct: 239 HQIAMDYMEK--------------MRPRMESYGIPLFERDFVSLPVKAPQSQAYLGAMAA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR +T R+AF++ F D+L + ++YDV+HNIAK E + VDG ++ LV
Sbjct: 285 AANFAWVNRQLITHRVREAFSRVFRRPWDELGLFLLYDVAHNIAKYEVYEVDGAERMFLV 344
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 345 HRKGATRAFP 354
>gi|448534046|ref|ZP_21621550.1| hypothetical protein C467_07055 [Halorubrum hochstenium ATCC
700873]
gi|445705261|gb|ELZ57162.1| hypothetical protein C467_07055 [Halorubrum hochstenium ATCC
700873]
Length = 502
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 149/266 (56%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIGGTADAIEGALERGVEWAVEEGYGVESDLARCEDEGRRSDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ + A++ G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREEVAAEYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y+ ++ E D++ D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDYL---RRIEQEHGDLLDDLP--DKELAAAPAGSQLAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAW NR +T R+ F + F+ P +DL M ++YDV+HNIAK E H
Sbjct: 293 CINFAWANRQLITHQARETFGEVFDADPIEDLGMELLYDVAHNIAKKETHEIGVDAEGNP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
+ D +++ L VHRK + + P
Sbjct: 353 AVGDAVADREERELYVHRKGATRAFP 378
>gi|448622930|ref|ZP_21669579.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
denitrificans ATCC 35960]
gi|445753438|gb|EMA04855.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
denitrificans ATCC 35960]
Length = 501
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 146/265 (55%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +IY A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDIYRDDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK K + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHKDLLDDLPDKELAAAPAGSELAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--------- 231
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H V
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHEVGVDPEGRPV 352
Query: 232 -DG-----KQKTLLVHRKVSEPSHP 250
DG +++ L VHRK + + P
Sbjct: 353 RDGDAVEREERELYVHRKGATRAFP 377
>gi|448440711|ref|ZP_21588789.1| hypothetical protein C471_04735 [Halorubrum saccharovorum DSM 1137]
gi|445690097|gb|ELZ42318.1| hypothetical protein C471_04735 [Halorubrum saccharovorum DSM 1137]
Length = 502
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 147/266 (55%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIGGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ + A G+ + G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREAVAESYGLREDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRRIEKEHGDLLADLPDKELAAAPAGSELAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEHMV----DGK- 234
NFAWVNR +T R+ F + F+ P +DL M ++YDV+HNIAK E H V DG+
Sbjct: 293 CINFAWVNRQLITHQARETFGEVFDADPIEDLGMELLYDVAHNIAKKETHEVGVDDDGRP 352
Query: 235 ----------QKTLLVHRKVSEPSHP 250
+ L VHRK + + P
Sbjct: 353 AVGDEAIDRADRELYVHRKGATRAFP 378
>gi|448453026|ref|ZP_21593626.1| hypothetical protein C470_12883 [Halorubrum litoreum JCM 13561]
gi|445808113|gb|EMA58188.1| hypothetical protein C470_12883 [Halorubrum litoreum JCM 13561]
Length = 502
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 146/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFRADVAESYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L Q+EK E D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRQIEKEHGDLLDELPDKELAAAPAGSELAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR ++ R+ F + F+ P +DL M ++YDV+HNIAK E H
Sbjct: 293 CINFAWVNRQLISHQARKTFGEVFDADPIEDLGMELLYDVAHNIAKKETHEVGVDAEGRP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD ++ L VHRK + + P
Sbjct: 353 AVGDEEVDRAERELYVHRKGATRAFP 378
>gi|169830673|ref|YP_001716655.1| hypothetical protein Daud_0477 [Candidatus Desulforudis audaxviator
MP104C]
gi|169637517|gb|ACA59023.1| protein of unknown function UPF0027 [Candidatus Desulforudis
audaxviator MP104C]
Length = 473
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 135/249 (54%), Gaps = 20/249 (8%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D++P GVG K ++ R E G+ + +G A D E+ EE G + AD V
Sbjct: 122 DYVPTGVGKKSKHGELSRRLFERVARTGVRALVEQGVGAAADLEYIEEGGCLAGADLDAV 181
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
S A KRG QLGTLG GNH+ E Q V E+ + A + G+ GQ+ VMIH+GSRGFGH
Sbjct: 182 SREAYKRGETQLGTLGGGNHFIEFQEVAELLEPALAERWGLFP-GQLTVMIHTGSRGFGH 240
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
Q+ T D A K+ IE ++ LACA NS EG+ Y ++MA A
Sbjct: 241 QICT--------------DFSRSHVTAAKKYGIELPNKGLACAPSNSPEGRQYFQAMACA 286
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
NFA+ NR ++ +AFA F P+ L ++YDV+HNIAK E H G +K +LVH
Sbjct: 287 VNFAFANRHLISHDVGRAFADVFRKEPEKLGFGLVYDVAHNIAKWERH---GGRK-VLVH 342
Query: 242 RKVSEPSHP 250
RK + + P
Sbjct: 343 RKGATRALP 351
>gi|167042979|gb|ABZ07692.1| putative uncharacterized protein family UPF0027 [uncultured marine
microorganism HF4000_ANIW137P11]
Length = 547
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 131/243 (53%), Gaps = 10/243 (4%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ IP G SKG + ++ ++ L G ++ G+ A D E GR L ++
Sbjct: 185 LASQIPAGATSKGGVLLDETSMDAILSEGAAAAVELGWGEARDLAAIESNGR-LESEERD 243
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V RA+KRG+ LGTLG+GNH+ E+Q+VD + D+ AA+ G+ + GQV MIH+GSRG G
Sbjct: 244 VGERARKRGMKALGTLGSGNHFLELQVVDRVVDEVAAAAFGLRE-GQVTAMIHTGSRGLG 302
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV + I D V E + DRQLA A I S+EG YL +M A
Sbjct: 303 HQVCSEHVAAIESKYTRIGDEWVADEW-----DYRLRDRQLAAAPIFSREGSAYLDAMRA 357
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+A+ NRS++T R + D + ++YDV HNIAK E+H V GK V
Sbjct: 358 AGNYAFANRSALTQRLRTVLRGHLGS---DGGLELVYDVCHNIAKVEDHNVHGKSCKCCV 414
Query: 241 HRK 243
HRK
Sbjct: 415 HRK 417
>gi|448459708|ref|ZP_21596758.1| hypothetical protein C469_13530 [Halorubrum lipolyticum DSM 21995]
gi|445808160|gb|EMA58234.1| hypothetical protein C469_13530 [Halorubrum lipolyticum DSM 21995]
Length = 502
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 146/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ + A + G+ + G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREGVADEFGLREDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK D++LA A S+ +Y +M A
Sbjct: 247 HQ---------TCNDY-----LRRIEKEHGDLLDSLPDKELAAAPAGSELADEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEHMV----DGK- 234
NFAWVNR +T R+ F + F+ P DDL M ++YDV+HNIAK E H V DG+
Sbjct: 293 CINFAWVNRQLITHQARETFGEVFDADPIDDLGMELLYDVAHNIAKKETHEVGVDADGRP 352
Query: 235 ----------QKTLLVHRKVSEPSHP 250
+ L VHRK + + P
Sbjct: 353 AVGDEATERADRELYVHRKGATRAFP 378
>gi|448490701|ref|ZP_21608159.1| hypothetical protein C463_06005 [Halorubrum californiensis DSM
19288]
gi|445693819|gb|ELZ45961.1| hypothetical protein C463_06005 [Halorubrum californiensis DSM
19288]
Length = 502
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 146/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G+I +A +E ALE G++W++ EGY D CE+ GR +A P
Sbjct: 128 LFEAVPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ + A G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREDVADAYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK + D++LA A S+ ++Y +M A
Sbjct: 247 HQ---------TCNDY-----LRRIEKEHGDLLADLPDKELAAAPAGSELAEEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR +T R+ F + F+ P +DL M ++YDV+HNIAK E H
Sbjct: 293 CINFAWVNRQLITHQARETFGEVFDADPIEDLGMELLYDVAHNIAKKETHEVGVDADGLP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD + L VHRK + + P
Sbjct: 353 AVGDEAVDRADRELYVHRKGATRAFP 378
>gi|348169959|ref|ZP_08876853.1| hypothetical protein SspiN1_05450 [Saccharopolyspora spinosa NRRL
18395]
Length = 470
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 24/249 (9%)
Query: 6 PVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRA 65
P G G + ++ L+ LE G +++ G D E CE+ G + +A+P +VS RA
Sbjct: 125 PRGAGRGAVWELHREGLDRLLEEGCHYAVARGRGTPRDLERCEDGGAVADAEPGRVSARA 184
Query: 66 KKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 125
+ RGL Q+G+LG+GNH+ E+Q V EIYD+ A G+ + Q+CVMIH GSRG GHQ+ T
Sbjct: 185 RDRGLGQVGSLGSGNHFLEVQAVAEIYDEGVAGAFGLR-LDQLCVMIHCGSRGLGHQICT 243
Query: 126 GKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFA 185
D + M+++M + DRQLAC ++S G+ YL +MAAAAN+A
Sbjct: 244 --------------DHVRSMDESMADYGLTVPDRQLACTPVDSPAGRAYLGAMAAAANYA 289
Query: 186 WVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS 245
NR + + K D ++YD+SHN+AK E H V+G+++TL VHRK +
Sbjct: 290 RANRHVLGVAAGEVLRKATGCGLD-----LVYDISHNLAKIETHEVEGQRRTLCVHRKGA 344
Query: 246 ----EPSHP 250
P HP
Sbjct: 345 TRALPPGHP 353
>gi|448464428|ref|ZP_21598441.1| hypothetical protein C468_05763 [Halorubrum kocurii JCM 14978]
gi|124484034|emb|CAM32979.1| RtcB like protein [Archaeal BJ1 virus]
gi|445815540|gb|EMA65463.1| hypothetical protein C468_05763 [Halorubrum kocurii JCM 14978]
Length = 502
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 145/266 (54%), Gaps = 31/266 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G+I +A +E ALE G++W++ +GY D CE+ GR +A P
Sbjct: 128 LFEAVPSGLGGGGVIDGDADAIEGALERGVEWAVEQGYGIESDLARCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A RG Q+G+LG+GNH+ E+Q V +++ A G+E+ G + V+IH GSRG G
Sbjct: 188 VSQKATDRGRNQMGSLGSGNHFLEVQRVTDVFLPEVAESYGLEEDG-IVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK E D++LA A S+ +Y +M A
Sbjct: 247 HQ---------TCNDY-----LRRIEKEHGDLLAELPDKELAAAPAGSELADEYYGAMGA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH---------- 229
NFAWVNR +T R+ F + F+ P ++L M ++YDV+HNIAK E H
Sbjct: 293 CINFAWVNRQLITHQARRTFGEVFDADPVEELGMELLYDVAHNIAKKETHEVGVDADGRP 352
Query: 230 -----MVDGKQKTLLVHRKVSEPSHP 250
VD ++ L VHRK + + P
Sbjct: 353 AVGDEAVDRAERELYVHRKGATRAFP 378
>gi|225181015|ref|ZP_03734462.1| protein of unknown function UPF0027 [Dethiobacter alkaliphilus AHT
1]
gi|225168212|gb|EEG77016.1| protein of unknown function UPF0027 [Dethiobacter alkaliphilus AHT
1]
Length = 473
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 134/247 (54%), Gaps = 25/247 (10%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG K R+ LE+AL G + +GY D + CEE G + A + VS
Sbjct: 127 IPAGVGGKSRHHRLCREGLEDALTHGARGLVSKGYGIRADLDRCEESGCLSGAQTAAVSA 186
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A +R QL TLG GNH+ E+ IV+ I D+ AA+ G+E G + V+IH+GSRGFGHQ+
Sbjct: 187 KALQRA-AQLSTLGGGNHFLEMGIVEIIEDESAANTFGLEK-GMLTVLIHTGSRGFGHQI 244
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T E M KA K I + LA +S EG +YL +MA A N
Sbjct: 245 CTDYTEI--------------MFKAAKNYGIHLPGKGLAACPTDSPEGSNYLAAMACAVN 290
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FA+ NR +TF R+AF + T D+ V+YDV+HNIAK EEH + LLVHRK
Sbjct: 291 FAFANRQLITFDIREAFQEVLGET----DLAVVYDVAHNIAKFEEHF----GEKLLVHRK 342
Query: 244 VSEPSHP 250
+ + P
Sbjct: 343 GATRALP 349
>gi|419759784|ref|ZP_14286071.1| RtcB protein [Thermosipho africanus H17ap60334]
gi|407515161|gb|EKF49941.1| RtcB protein [Thermosipho africanus H17ap60334]
Length = 445
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 147/261 (56%), Gaps = 35/261 (13%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++D IPVGVG+ + + ++ +E G +++ GY +ED E+ E++G + A
Sbjct: 106 LYDVIPVGVGAT-SKKFDKKSFKKIIEEGAKRAIKMGYGLSEDLEYIEDFGSISPASMED 164
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S A +RG +LGTLGAGNH+ EIQ V+EIYD+ A+ +G+ + +MIH+GSRGFG
Sbjct: 165 ISKTAYERGREELGTLGAGNHFIEIQKVEEIYDEKKANILGLYK-NHIVIMIHTGSRGFG 223
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT Y+ K M+ + + D+QLA A +S GQ Y +M
Sbjct: 224 HQIATD---------YI---------KLMRNLHNDLPDKQLAYAYFDSDLGQKYYSAMNC 265
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR +T R+ F+K F+ + ++YDV+HNIAK E+H + L+V
Sbjct: 266 AANYAFSNRQIITHYIRKVFSK-FS------KVEIVYDVAHNIAKVEKH----DNQKLIV 314
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP + K
Sbjct: 315 HRKGATRAFGPYHPDIPEKYK 335
>gi|383824838|ref|ZP_09980009.1| hypothetical protein MXEN_08407 [Mycobacterium xenopi RIVM700367]
gi|383336466|gb|EID14864.1| hypothetical protein MXEN_08407 [Mycobacterium xenopi RIVM700367]
Length = 455
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 137/251 (54%), Gaps = 25/251 (9%)
Query: 5 IPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP G G + P++ +L++ L G + + G D + CE+ G ADP+ VS
Sbjct: 107 IPRGAGPGAVRAPVSDEELDQVLRGGSRYVVEHGDGSQLDLDRCEDGGVFEEADPAAVSE 166
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA+ RG QLG+LG+GNH+ E+Q V E+ D+ A G+ GQVCVMIH GSRG GHQ+
Sbjct: 167 RARARGRHQLGSLGSGNHFLEVQHVAEVLDEPVAKAFGLR-AGQVCVMIHCGSRGLGHQI 225
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + M+ AM+R + DRQLAC ++S EG+ YL +M AAAN
Sbjct: 226 CT--------------DEVHAMDHAMQRHGVRVPDRQLACVPVDSGEGRRYLGAMYAAAN 271
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A ++ L R A + T L++ +YD+SHN+A+ E H V G L VHRK
Sbjct: 272 YAR---ANRQILGRAASEVFLSVTGTGLEL--VYDISHNLARIERHEVAGDLVDLCVHRK 326
Query: 244 VS----EPSHP 250
+ P HP
Sbjct: 327 GATRALPPGHP 337
>gi|337293317|emb|CCB91307.1| UPF0027 protein TK0358 [Waddlia chondrophila 2032/99]
Length = 475
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 21/245 (8%)
Query: 1 MFDHIPVGVG--SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADP 58
+F +P GVG +K + D ++ +E G WS+ +G+ +D EH E G + +
Sbjct: 122 IFKRVPSGVGRGTKQGKELTESDYKQIVEKGSRWSVEQGFGLPQDLEHTESRGFIEGGEI 181
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS AK+RG QLG++G+GNH+ EI V +Y + A GI G ++IHSGSRG
Sbjct: 182 DAVSPLAKERGRHQLGSVGSGNHFVEIGEVSHLYLEEIAQTWGIVK-GMTYILIHSGSRG 240
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQ+ C+ D L K + + D+QL A I S G+ Y ++M
Sbjct: 241 FGHQI----CQ----------DTLNTFVKKNLDEGLP--DKQLIAAPIRSALGKQYFQAM 284
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A+AANFA+ NR + RQ+F + T+ + + + IYDV HNIAK E++ +DGK KT+
Sbjct: 285 ASAANFAFNNRQRILHQVRQSFLEVLGTSAESIRL--IYDVCHNIAKFEQYTIDGKLKTV 342
Query: 239 LVHRK 243
VHRK
Sbjct: 343 CVHRK 347
>gi|448565376|ref|ZP_21636243.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
prahovense DSM 18310]
gi|445715120|gb|ELZ66876.1| RNA terminal phosphate cyclase operon orfB-like protein [Haloferax
prahovense DSM 18310]
Length = 501
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 30/265 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ +P G+G G++ +A +E+ L GM W++ GY +D HCE+ G +A P
Sbjct: 128 LFEAVPSGLGGGGVVTGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFRDDARPEF 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG Q+G+LG+GNH+ E+Q V +IY + A G+E Q+ V+IH GSRG G
Sbjct: 188 VSQKAKDRGRNQIGSLGSGNHFLEVQRVTDIYREDVAESFGLE-ADQIVVLIHCGSRGLG 246
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ TC Y L ++EK K + D++LA A S ++Y +M A
Sbjct: 247 HQ---------TCTDY-----LRRIEKEHKDLLDDLPDKELAAAPAGSALAEEYYGAMCA 292
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH----------- 229
A NFAWVNR + R+ FA F+ D++M ++YDV+HNIAK E H
Sbjct: 293 AINFAWVNRQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHEVGVDPEGRPV 352
Query: 230 ----MVDGKQKTLLVHRKVSEPSHP 250
V+ +++ L VHRK + + P
Sbjct: 353 RDSDAVEREERELYVHRKGATRAFP 377
>gi|297620800|ref|YP_003708937.1| hypothetical protein wcw_0561 [Waddlia chondrophila WSU 86-1044]
gi|297376101|gb|ADI37931.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 475
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 21/245 (8%)
Query: 1 MFDHIPVGVG--SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADP 58
+F +P GVG +K + D ++ +E G WS+ +G+ +D EH E G + +
Sbjct: 122 IFKRVPSGVGRGTKQGKELTESDYKQIVEKGSRWSVEQGFGLPQDLEHTESRGFIEGGEI 181
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS AK+RG QLG++G+GNH+ EI V +Y + A GI G ++IHSGSRG
Sbjct: 182 DAVSPLAKERGRHQLGSVGSGNHFVEIGEVSHLYLEEIAQTWGIVK-GMTYILIHSGSRG 240
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQ+ C+ D L K + + D+QL A I S G+ Y ++M
Sbjct: 241 FGHQI----CQ----------DTLNTFVKKNLDEGLP--DKQLIAAPIRSALGKQYFQAM 284
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A+AANFA+ NR + RQ+F + T+ + + + IYDV HNIAK E++ +DGK KT+
Sbjct: 285 ASAANFAFNNRQRILHQVRQSFLEVLGTSAESIRL--IYDVCHNIAKFEQYTIDGKLKTV 342
Query: 239 LVHRK 243
VHRK
Sbjct: 343 CVHRK 347
>gi|389845988|ref|YP_006348227.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|448616397|ref|ZP_21665107.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|388243294|gb|AFK18240.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
gi|445751052|gb|EMA02489.1| rtcB-like protein [Haloferax mediterranei ATCC 33500]
Length = 478
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IP G G + N D+ LE G++W L G+ D +HCEE G L +DP+
Sbjct: 126 LYQTIPTGAAEGGSLDTNISDVRGILEGGLEWMLANGHATKTDLDHCEENGH-LPSDPNA 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V A KRG+ Q+G+LG GNH+ E+Q V ++YD A+ GI D V VMIH+GSRG G
Sbjct: 185 VPTEALKRGVNQVGSLGRGNHFLEVQRVTDVYDTETAAAFGI-DTDDVVVMIHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ + L E+ + D++L A + +Y +M A
Sbjct: 244 HQT--------------YSHYLRAFERKYRSLAESLPDKKLVYAPLGDDLADEYWNAMNA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR ++T R+ F F+TT ++ ++YDV HN+AK E H VDG+ KTLLV
Sbjct: 290 AANFAWANRQALTQAVRKVFDDLFDTT----EVELVYDVCHNMAKEERHTVDGETKTLLV 345
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 346 HRKGATRAFP 355
>gi|167037990|ref|YP_001665568.1| hypothetical protein Teth39_1588 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116406|ref|YP_004186565.1| hypothetical protein Thebr_1627 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856824|gb|ABY95232.1| protein of unknown function UPF0027 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929497|gb|ADV80182.1| protein of unknown function UPF0027 [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 454
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 142/248 (57%), Gaps = 20/248 (8%)
Query: 4 HIPVGVGSKGIIPMNARDL-EEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++P G+G KG R + ++ + G++ ++ G+ D EE G++ AD S VS
Sbjct: 105 YVPTGIGKKGRHKGITRLIFDDVVHNGVEAVIKAGFGKKSDLNFIEEGGKLSGADISAVS 164
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A++RG QLGTLG GNH+ EIQ VD I+D+ A + G+ GQ+ MIH+GSRGFGHQ
Sbjct: 165 KEAQERGEEQLGTLGGGNHFIEIQQVDSIFDEKLAERFGLFK-GQIAAMIHTGSRGFGHQ 223
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+AT D + +A K+ ++ ++ LA A I+SKEG+ Y K+MAAA
Sbjct: 224 IAT--------------DYTKILWEAAKKYGVDVPEKGLAAAPIDSKEGKAYYKAMAAAV 269
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA+ NR + F +AF + + + ++YDV+HNIAK EEH K LLVHR
Sbjct: 270 NFAFSNRQIIMFDVIKAFEDVLKKSSESMGFRLVYDVAHNIAKWEEH----GGKKLLVHR 325
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 326 KGATRALP 333
>gi|289577937|ref|YP_003476564.1| hypothetical protein Thit_0712 [Thermoanaerobacter italicus Ab9]
gi|289527650|gb|ADD02002.1| protein of unknown function UPF0027 [Thermoanaerobacter italicus
Ab9]
Length = 502
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 142/248 (57%), Gaps = 20/248 (8%)
Query: 4 HIPVGVGSKGIIPMNARDL-EEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++P G+G KG R + ++ + G++ ++ G+ D EE G++ AD S VS
Sbjct: 153 YVPTGIGKKGRHKGITRLIFDDVVHNGVEAVIKAGFGKKSDLNFIEEGGKLSGADISAVS 212
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A++RG QLGTLG GNH+ EIQ VD I D+ A + G+ GQ+ VMIH+GSRGFGHQ
Sbjct: 213 KEAQERGEEQLGTLGGGNHFIEIQQVDSILDEKLAERFGLFK-GQIAVMIHTGSRGFGHQ 271
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+AT D + +A K+ ++ ++ LA A I+SKEG+ Y K+MAAA
Sbjct: 272 IAT--------------DYTKILWEAAKKYGVDVPEKGLAAAPIDSKEGKAYYKAMAAAV 317
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA+ NR + F +AF + + + ++YDV+HNIAK EEH K LLVHR
Sbjct: 318 NFAFSNRQIIMFDVIKAFEDVLKKSSESMGFQLVYDVAHNIAKWEEH----GGKKLLVHR 373
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 374 KGATRALP 381
>gi|407013224|gb|EKE27395.1| hypothetical protein ACD_3C00213G0004 [uncultured bacterium (gcode
4)]
Length = 479
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
+P V + ++ +L + L + + ++ + +ED E+CE + +A+P K+S
Sbjct: 129 VPSWVWKWHKLKISINELNDILRGWVKYLAKKWFATSEDVENCESNWSLPDANPDKISEH 188
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
AK R L Q TLG+GNH+ E+Q V++I+D A+ I + QV +M+H+ SR GHQVA
Sbjct: 189 AKLRWLDQEWTLGSGNHFLEVQKVEKIFDDRIANIFWIRE-NQVVIMVHTWSRWLGHQVA 247
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T D + M ++ + IE DR+LAC +S E QDY +M+ AANF
Sbjct: 248 T--------------DYVRIMLQSQSKYWIELVDRELACLPFSSPEWQDYFAAMSGAANF 293
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD-GKQKTLLVHRK 243
AW NR +T+L RQ++ + ++ ++YDV+HNI K E H + G LLVHRK
Sbjct: 294 AWANRQMITYLIRQSWERVIGK----WELRLLYDVAHNICKIETHQDEKGHNIELLVHRK 349
Query: 244 VSEPSHP 250
+ S P
Sbjct: 350 WATRSFP 356
>gi|297544210|ref|YP_003676512.1| hypothetical protein Tmath_0763 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841985|gb|ADH60501.1| protein of unknown function UPF0027 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 502
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 141/248 (56%), Gaps = 20/248 (8%)
Query: 4 HIPVGVGSKGIIPMNARDL-EEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
++P G+G KG R + ++ + G++ ++ G+ D EE G++ AD S VS
Sbjct: 153 YVPTGIGKKGRHKGITRLIFDDVVHNGVEAVIKAGFGKKSDLNFIEEGGKLSGADISAVS 212
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A+ RG QLGTLG GNH+ EIQ VD I D+ A + G+ GQ+ VMIH+GSRGFGHQ
Sbjct: 213 KEAQGRGEEQLGTLGGGNHFIEIQQVDSILDEKLAERFGLFK-GQIAVMIHTGSRGFGHQ 271
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+AT D + +A K+ ++ ++ LA A I+SKEG+ Y K+MAAA
Sbjct: 272 IAT--------------DYTKILWEAAKKYGVDVPEKGLAAAPIDSKEGKAYYKAMAAAV 317
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA+ NR + F +AF + + + ++YDV+HNIAK EEH K LLVHR
Sbjct: 318 NFAFSNRQIIMFDVIKAFEDVLKKSSESMGFQLVYDVAHNIAKWEEH----GGKKLLVHR 373
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 374 KGATRALP 381
>gi|448475026|ref|ZP_21602791.1| hypothetical protein C461_10336 [Halorubrum aidingense JCM 13560]
gi|445817018|gb|EMA66900.1| hypothetical protein C461_10336 [Halorubrum aidingense JCM 13560]
Length = 502
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 144/267 (53%), Gaps = 33/267 (12%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+ IP G+G G+I +A +E ALE G++W++ EGY D HCE+ GR +A P
Sbjct: 128 LFEAIPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLTHCEDEGRRPDARPEY 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI-EDVGQVCVMIHSGSRGF 119
VS +A RG QLG+LG+GNH+ E+Q V +++ A G+ ED + V+IH GSRG
Sbjct: 188 VSQKAIDRGRNQLGSLGSGNHFLEVQRVTDVFLDDVAESYGLAEDA--IVVLIHCGSRGL 245
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQ TC Y L ++EK D++LA A S ++Y +M
Sbjct: 246 GHQ---------TCNDY-----LRRIEKRHGDLLDSLPDKELAAAPAGSALAEEYYGAMG 291
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEH--------- 229
A NFAWVNR +T R+ F + F+ P DDL M ++YDV+HNIAK E H
Sbjct: 292 ACINFAWVNRQLITHQTRETFGEVFDADPIDDLGMELLYDVAHNIAKKETHEVGVDEDGV 351
Query: 230 ------MVDGKQKTLLVHRKVSEPSHP 250
VD ++ L VHRK + + P
Sbjct: 352 PAVGDEAVDRAERELYVHRKGATRAFP 378
>gi|220933074|ref|YP_002509982.1| hypothetical protein Hore_22420 [Halothermothrix orenii H 168]
gi|219994384|gb|ACL70987.1| uncharacterized conserved protein [Halothermothrix orenii H 168]
Length = 447
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 139/249 (55%), Gaps = 24/249 (9%)
Query: 3 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSL-REGYIWAEDKEHCEEYGRMLNADPSKV 61
+ IP G+G + + E +E G+ + + R GY D CEE G + AD + V
Sbjct: 113 NEIPAGLGVNSTLTFTDQQFERVVEEGLPFLITRLGYGQTIDIAACEENGHLKGADLTGV 172
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
S +A RG QLGTLG+GNH+ EIQ++D++Y+ + G+E+ GQ+ +MIH+GSRGFGH
Sbjct: 173 SKKAINRGKKQLGTLGSGNHFLEIQVIDKVYNHNS----GLEE-GQISIMIHTGSRGFGH 227
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
Q+A D + +K K+ N + + LA INS EG+DY ++MA A
Sbjct: 228 QIAE--------------DYINIAKKRAKKYNFDFPTKNLASFPINSPEGEDYYRAMACA 273
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
ANFA+ NR +T RQ N + V YD++HNI K E H ++GK+K LLVH
Sbjct: 274 ANFAFANRQILTHFVRQV----INHFIPGTFITVYYDLAHNICKKEIHQINGKKKALLVH 329
Query: 242 RKVSEPSHP 250
RK + P
Sbjct: 330 RKGATKLSP 338
>gi|217077208|ref|YP_002334926.1| RtcB protein [Thermosipho africanus TCF52B]
gi|217037063|gb|ACJ75585.1| RtcB protein [Thermosipho africanus TCF52B]
Length = 445
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 145/261 (55%), Gaps = 35/261 (13%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++D IPVGVG+ + + ++ +E G ++ G +ED E+ E++G + A
Sbjct: 106 LYDVIPVGVGAT-SKKFDKKSFKKIIEEGAKRAIEMGCGLSEDLEYIEDFGSISPASMED 164
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S A +RG +LGTLGAGNH+ EIQ V+EIYD+ A+ +G+ + +MIH+GSRGFG
Sbjct: 165 ISKTAYERGREELGTLGAGNHFIEIQKVEEIYDEKKANILGLYK-NHIVIMIHTGSRGFG 223
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT Y+ K M+ + + D+QLA A +S GQ Y +M
Sbjct: 224 HQIATD---------YI---------KLMRNLHNDLPDKQLAYAYFDSDLGQKYYSAMNC 265
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A+ NR +T R+ F+K F+ + ++YDV+HNIAK E+H + L+V
Sbjct: 266 AANYAFSNRQIITHYIRKVFSK-FS------KVEIVYDVAHNIAKVEKH----DNQKLIV 314
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP + K
Sbjct: 315 HRKGATRAFGPYHPDIPEKYK 335
>gi|326391486|ref|ZP_08213020.1| protein of unknown function UPF0027 [Thermoanaerobacter ethanolicus
JW 200]
gi|325992462|gb|EGD50920.1| protein of unknown function UPF0027 [Thermoanaerobacter ethanolicus
JW 200]
Length = 483
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 134/229 (58%), Gaps = 19/229 (8%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNH 81
++ + G++ ++ G+ D E+ EE G++ AD S VS A++RG QLGTLG GNH
Sbjct: 153 FDDVVHSGVEAVIKAGFGKKSDLEYIEEGGKLEGADLSAVSKEAQERGEEQLGTLGGGNH 212
Query: 82 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDA 141
+ EIQ VD I D+ A + G+ GQ+ +MIH+GSRGFGHQ+AT T + +V
Sbjct: 213 FIEIQRVDSILDEKLARQFGLFK-GQIVIMIHTGSRGFGHQIAT----DYTKILWV---- 263
Query: 142 LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFA 201
A K+ IE ++ LA A I+SKEG+ Y K+MAAA NFA+ NR + F +AF
Sbjct: 264 ------AAKKYGIEVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIRAFE 317
Query: 202 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ + + ++YDV+HNIAK E H K LLVHRK + + P
Sbjct: 318 DVLKKSEESMGFQLVYDVAHNIAKWEVH----GGKKLLVHRKGATRALP 362
>gi|392940497|ref|ZP_10306141.1| hypothetical protein ThesiDRAFT1_1810 [Thermoanaerobacter
siderophilus SR4]
gi|392292247|gb|EIW00691.1| hypothetical protein ThesiDRAFT1_1810 [Thermoanaerobacter
siderophilus SR4]
Length = 483
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 134/241 (55%), Gaps = 26/241 (10%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNH 81
++ + G++ ++ G+ D E+ EE G + AD S VS A++RG QLGTLG GNH
Sbjct: 153 FDDVVHRGVEAVIKAGFGKKSDLEYIEENGGLSGADLSAVSKEAQERGEEQLGTLGGGNH 212
Query: 82 YAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDA 141
+ EIQ VD I D+ A + G+ GQ+ VMIH+GSRGFGHQ+AT D
Sbjct: 213 FIEIQRVDSILDEKLARQFGLFK-GQIVVMIHTGSRGFGHQIAT--------------DY 257
Query: 142 LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFA 201
+ +A K+ IE ++ LA A I+SKEG+ Y K+MAAA NFA+ NR + F +AF
Sbjct: 258 TKILWEAAKKYGIEVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVMKAFE 317
Query: 202 KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK-------VSEPSHPGVSR 254
+ + + ++YDV+HNIAK E H + LLVHRK P +P V
Sbjct: 318 DVLKKSSESMGFQLVYDVAHNIAKWEIH----GGRRLLVHRKGATRALPAGHPQNPSVYM 373
Query: 255 N 255
N
Sbjct: 374 N 374
>gi|357402586|ref|YP_004914511.1| hypothetical protein SCAT_5020 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386358659|ref|YP_006056905.1| hypothetical protein SCATT_50120 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337768995|emb|CCB77708.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365809167|gb|AEW97383.1| hypothetical protein SCATT_50120 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 481
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 139/252 (55%), Gaps = 26/252 (10%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
+P G G G+ ++ +L E L G +++ G+ D E CE+ G + ADP +V R
Sbjct: 133 VPRGAGRGGVWHVSRAELAEVLAHGARYAVERGHGVPRDLERCEDGGTLPGADPGQVGER 192
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A RGL Q+G+LG+GNH+ E+Q VD ++D AA MG+ GQVCVMIH GSRG GHQ+
Sbjct: 193 AVDRGLGQVGSLGSGNHFLEVQAVDVVHDAAAARAMGLAP-GQVCVMIHCGSRGLGHQIC 251
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T D + M+ M R IE DRQLACA ++S G+ YL +MAAAAN+
Sbjct: 252 T--------------DHVRAMDPVMPRYGIEVPDRQLACAPVDSGPGRAYLAAMAAAANY 297
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV--DGKQKTLLVHR 242
R++ L A + LD+ +YD+SHN+AK E H V D + L VHR
Sbjct: 298 ---ARANRQLLAEAARRAFAESVGCGLDL--VYDISHNMAKLERHPVGEDAAPRLLCVHR 352
Query: 243 KVS----EPSHP 250
K + P HP
Sbjct: 353 KGATRALPPGHP 364
>gi|448613594|ref|ZP_21663474.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
gi|445740491|gb|ELZ91997.1| rtcB-like protein [Haloferax mucosum ATCC BAA-1512]
Length = 478
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 20/246 (8%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP G + G + + D+ LE G++W G+ D +HCEE+GR L +DP+ V
Sbjct: 130 IPTGPVAGGYVDADISDVRGILEDGLEWMHSNGHATRADLDHCEEHGR-LPSDPNAVPTE 188
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A KRG+ Q+G+LGAG H+ E+Q V ++YD A+ G+ V VMIHSGSRG GHQ
Sbjct: 189 ALKRGVSQVGSLGAGTHFVEVQRVTDVYDDETAAAFGL-GTDDVVVMIHSGSRGVGHQ-- 245
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
TC Y+ E+ + + D QL A + ++ +M AAANF
Sbjct: 246 -------TCAHYIR-----AFEREYQSLSASLPDEQLVYAPLGDDLADEFRGAMNAAANF 293
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV 244
AW NR ++T R+ F F T + V+YDV HNIAK E H V+G+ +TLLVHRK
Sbjct: 294 AWANRQAITEAVREVFDVLFGAT----GLEVVYDVCHNIAKEERHAVNGEMQTLLVHRKG 349
Query: 245 SEPSHP 250
+ + P
Sbjct: 350 ATRAFP 355
>gi|302390272|ref|YP_003826093.1| hypothetical protein Toce_1735 [Thermosediminibacter oceani DSM
16646]
gi|302200900|gb|ADL08470.1| protein of unknown function UPF0027 [Thermosediminibacter oceani
DSM 16646]
Length = 477
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 141/248 (56%), Gaps = 23/248 (9%)
Query: 5 IPVGVG-SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+P GVG S + + DL+ ++G+++ +R G+ ED E E+ G + D + V
Sbjct: 126 VPSGVGKSSAVKALRKPDLDAVAQIGVEYFVRAGFGRKEDLERIEDRGCIPGGDAAAVPK 185
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI-EDVGQVCVMIHSGSRGFGHQ 122
A++R QL T+G GNH+ EI V +++D+ A + G+ +D+ V V+IH+GSRG GHQ
Sbjct: 186 AARERA-DQLATIGGGNHFIEIGRVAKVFDQETAERFGLFKDM--VYVLIHTGSRGLGHQ 242
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+ T D M + +R+ + + LACA + S++GQ+YLK+MA AA
Sbjct: 243 ICT--------------DYSRIMWEHSERNGSKAPVKGLACAPVFSEDGQNYLKAMACAA 288
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
N+A+ NR +T R+AF + +L + ++YDV+HNIAK E+H + LLVHR
Sbjct: 289 NYAFCNRQLITHFVREAFVEVLKKPESELGLDLLYDVAHNIAKKEKH----GGRWLLVHR 344
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 345 KGATRALP 352
>gi|405946452|gb|EKC17641.1| UPF0027 protein C22orf28-like protein [Crassostrea gigas]
Length = 149
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 85/132 (64%), Gaps = 26/132 (19%)
Query: 53 MLNADPSKVSMRAKKRGLPQL------------GTLGAGNHYAEIQIVDEIYDKWAASKM 100
ML ADP KVS R KRG PQ+ G G GNH AEIQ+VD+IY+K+AA KM
Sbjct: 1 MLQADPGKVSSRDNKRGPPQVSGKNQTFTCVNVGNSGNGNHTAEIQVVDKIYNKFAAKKM 60
Query: 101 GIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ 160
GIE GQVCVMIH GSR GHQVAT DALV MEKAMKRDNI NDRQ
Sbjct: 61 GIEYTGQVCVMIHCGSRRLGHQVAT--------------DALVAMEKAMKRDNINVNDRQ 106
Query: 161 LACARINSKEGQ 172
LACA+I S EGQ
Sbjct: 107 LACAKIYSPEGQ 118
>gi|374724729|gb|EHR76809.1| RtcB family protein [uncultured marine group II euryarchaeote]
Length = 491
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 136/239 (56%), Gaps = 10/239 (4%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
IP G KG + +N + L++ ++ G ++ G+ + ED H E G ML+ + + +S R
Sbjct: 133 IPAGASGKGGLEINNQQLDDLIQRGAHAAVDFGFGFDEDLAHIESKG-MLHTEEAAISTR 191
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A++RGL LGTLG+GNH+ E+Q V + D A K G+ + GQ+ MIHSGSRG GHQV
Sbjct: 192 ARERGLRALGTLGSGNHFLELQTVGKTVDSETAEKWGLYE-GQLVAMIHSGSRGLGHQVC 250
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
+ + Y + + E DRQLA A +SKEGQ Y +M AAANF
Sbjct: 251 SDHVRALESR-YSSSNGMWVEESW----GYSLPDRQLAAAPFHSKEGQSYFDAMNAAANF 305
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A+ NRS++ R+ + T D + V+YDV+HNIAK E H +DG + + VHRK
Sbjct: 306 AFANRSALAHRLREVLRLELGT---DGEARVLYDVAHNIAKVEHHHIDGVECKVCVHRK 361
>gi|78044051|ref|YP_359049.1| hypothetical protein CHY_0177 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996166|gb|ABB15065.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 467
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 128/251 (50%), Gaps = 23/251 (9%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVG K L + L G L EGY +AED EE G + A+ +S
Sbjct: 123 YVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFAEDLNKIEEGGVLAGAEIKALSE 182
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
A RG LGTLG GNH+ E+Q+V E+ A G+ G +C+M+H+GSRG GHQV
Sbjct: 183 TALSRGAEGLGTLGGGNHFIEVQVVAEVRRWEVAQSFGLYP-GMLCLMVHTGSRGLGHQV 241
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C T + Y KA + N+ + LA +S EGQ Y ++M A+AN
Sbjct: 242 ----CTDYTEILY----------KAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASAN 287
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FA+ NR +T RQ F D + ++YD++HNIAK E H DG + +LVHRK
Sbjct: 288 FAYANRQLITHYLRQVFKSYLG----DGKLDLVYDLAHNIAKEEYH--DGIK--VLVHRK 339
Query: 244 VSEPSHPGVSR 254
+ + P R
Sbjct: 340 GATRALPAGHR 350
>gi|150020767|ref|YP_001306121.1| hypothetical protein Tmel_0875 [Thermosipho melanesiensis BI429]
gi|149793288|gb|ABR30736.1| protein of unknown function UPF0027 [Thermosipho melanesiensis
BI429]
Length = 443
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 132/243 (54%), Gaps = 31/243 (12%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ +PVG+GS + ++ +E G+ + GY ED E+ G + A
Sbjct: 104 IYKLVPVGLGSTSK-KFEKKLFKKIIENGVKEVIEMGYGKNEDLLFIEDNGTIHPASMED 162
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S A KRG +LGTLG+GNH+ EIQ V EIYDK A+ +G+ + Q+ VMIH+GSRGFG
Sbjct: 163 ISELAYKRGREELGTLGSGNHFIEIQKVVEIYDKEIANTLGLFE-NQITVMIHTGSRGFG 221
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT Y+ K M+ + D+QL A SK GQ Y +M
Sbjct: 222 HQVATD---------YI---------KLMRNIDKNLPDKQLVYAPFYSKLGQKYFSAMNC 263
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFA+ NR +T R+AF+ N + DL IYDV+HNIAK E H + ++V
Sbjct: 264 AANFAFANRQIITHYIRKAFS---NFSRLDL----IYDVAHNIAKVEIH----DNQKVVV 312
Query: 241 HRK 243
HRK
Sbjct: 313 HRK 315
>gi|282890206|ref|ZP_06298736.1| hypothetical protein pah_c014o070 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499863|gb|EFB42152.1| hypothetical protein pah_c014o070 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 476
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 1 MFDHIPVGVG---SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD 57
+F ++P GVG SK ++ D +E + G WS+ GY + D E+ E G + D
Sbjct: 122 IFRNVPSGVGHGFSKMKKKLSNSDYQELISKGALWSIEHGYGFELDLEYMESRGFIAGGD 181
Query: 58 PSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR 117
S VS++A++RG QLG++G+GNH+ EI + +++ A G+E GQ ++IHSGSR
Sbjct: 182 LSAVSLQARERGESQLGSIGSGNHFVEIGEIQKLFLPEIAKAWGVEQ-GQTYILIHSGSR 240
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
GFGHQV + Y K + DRQL A I+S+ G++Y K+
Sbjct: 241 GFGHQVCQDTLDDFLKQGYA---------KGLP-------DRQLVAAPIHSEAGRNYFKA 284
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
MAAAAN+A+ NR + RQ+F + P+++ + +YDV HNIAK E H ++G+ +
Sbjct: 285 MAAAANYAFNNRQQILHAVRQSFFETCKIAPEEIRL--LYDVCHNIAKFETHEINGEMRK 342
Query: 238 LLVHRK 243
L VHRK
Sbjct: 343 LCVHRK 348
>gi|338174272|ref|YP_004651082.1| hypothetical protein PUV_02780 [Parachlamydia acanthamoebae UV-7]
gi|336478630|emb|CCB85228.1| UPF0027 protein TK0358 [Parachlamydia acanthamoebae UV-7]
Length = 476
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 1 MFDHIPVGVG---SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD 57
+F ++P GVG SK ++ D +E + G WS+ GY + D E+ E G + D
Sbjct: 122 IFRNVPSGVGHGFSKMKKKLSNSDYQELISKGALWSIEHGYGFELDLEYMESRGFIAGGD 181
Query: 58 PSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR 117
S VS++A++RG QLG++G+GNH+ EI + +++ A G+E GQ ++IHSGSR
Sbjct: 182 LSAVSLQARERGESQLGSIGSGNHFVEIGEIQKLFLPEIAKAWGVEQ-GQTYILIHSGSR 240
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
GFGHQV + Y K + DRQL A I+S+ G++Y K+
Sbjct: 241 GFGHQVCQDTLDDFLKQGYA---------KGLP-------DRQLVAAPIHSEAGRNYFKA 284
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
MAAAAN+A+ NR + RQ+F + P+++ + +YDV HNIAK E H ++G+ +
Sbjct: 285 MAAAANYAFNNRQQILHAVRQSFFETCKIAPEEIRL--LYDVCHNIAKFETHEINGEMRK 342
Query: 238 LLVHRK 243
L VHRK
Sbjct: 343 LCVHRK 348
>gi|402468503|gb|EJW03655.1| hypothetical protein EDEG_02026 [Edhazardia aedis USNM 41457]
Length = 625
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 136/274 (49%), Gaps = 38/274 (13%)
Query: 10 GSKGIIP---MNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAK 66
G K P +N L + LE G+D+ + I +K E G+M ++ ++ +AK
Sbjct: 234 GLKTFFPGKTLNLEVLNQILEHGLDYLVNMKIIPENEKFLVESSGKM-ESNSRLINQKAK 292
Query: 67 KRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG 126
RG+ QLG+LG GNHY EIQ V +IYD A MGI GQ+ IH+GSRG GH
Sbjct: 293 ARGIQQLGSLGTGNHYLEIQKVSKIYDNEKAKIMGIYKEGQIVFSIHTGSRGLGHVTCQE 352
Query: 127 KCEKI--TCMAYVFPDALVQMEKAMKR-----DNIE-----TN----------------- 157
+KI C+A D + ++ K +NI TN
Sbjct: 353 YLKKIDEECIAKSTLDKKLMLKNGKKNLEEDLENINFANRATNSYKKIHDKILQFQEKKI 412
Query: 158 -DRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVI 216
D Q+ ++++ G +Y SM AA+NFA+ NR+ + + R+ F T + +I
Sbjct: 413 LDNQVGFTSVHTQNGTNYYTSMCAASNFAFANRALIDQITRKNIQALFPQT----ECKLI 468
Query: 217 YDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
YDV HNIAK E+H+VD + LLVHRK + S P
Sbjct: 469 YDVCHNIAKKEKHVVDNHKIDLLVHRKGASRSFP 502
>gi|83814778|ref|YP_446591.1| hypothetical protein SRU_2493 [Salinibacter ruber DSM 13855]
gi|294508523|ref|YP_003572582.1| hypothetical protein SRM_02709 [Salinibacter ruber M8]
gi|83756172|gb|ABC44285.1| Uncharacterized protein family UPF0027 [Salinibacter ruber DSM
13855]
gi|294344852|emb|CBH25630.1| conserved hypothetical protein containing UPF0027 [Salinibacter
ruber M8]
Length = 476
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 135/255 (52%), Gaps = 21/255 (8%)
Query: 3 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVS 62
+HIP G ++G I +N +++ + G W+LR+ +D EE GR+ ADP KVS
Sbjct: 127 NHIPSGTDAEGSISLNKSEVDHVAQSGAQWALRKDMAQQDDLVRAEEGGRLNEADPKKVS 186
Query: 63 MRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A+ G QLGTLG G H+ EI V+E++++ AA MG+++ G + IH GSRG+G Q
Sbjct: 187 EAARSIGAQQLGTLGGGEHFIEIHSVEEVFNRAAAVTMGLKE-GTLVAQIHCGSRGYGRQ 245
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
V E+ +A + +I+ D LA ++S E +DY+ +M AAA
Sbjct: 246 VCADYIERFQEVAPSY--------------DIDPPDPNLASVPLDSGEAEDYMGAMRAAA 291
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
N+A+ NR + R+ F + L +YDV+HN+ + E H VDGK VHR
Sbjct: 292 NYAYANRQVLAHRVREVFDDLLEGAGERL--KTVYDVAHNLGQVEMHQVDGKHMRCYVHR 349
Query: 243 KVSE----PSHPGVS 253
K + P PG+S
Sbjct: 350 KGAARAFGPGTPGIS 364
>gi|339500817|ref|YP_004698852.1| hypothetical protein Spica_2226 [Spirochaeta caldaria DSM 7334]
gi|338835166|gb|AEJ20344.1| protein of unknown function UPF0027 [Spirochaeta caldaria DSM 7334]
Length = 475
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 19/250 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS G + +++ L G W + G+ D+ E G + AD
Sbjct: 122 LFALVPSGVGSTGHRVFSKAEMKGLLSEGAPWIISAGFGVPSDQSAMESQGHLAAADAEL 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A +RG +LGTLGAGNH+ E+ ++ IYD A+ G+ + + V IH+GSRG G
Sbjct: 182 VSEKAIERGRDELGTLGAGNHFLEVDYIETIYDAEYAAAFGLRE-HDIVVWIHTGSRGLG 240
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D + +K M + I + +LA + EG+ Y +M+A
Sbjct: 241 HQVAT--------------DFINLFKKKMDQYKIPLYNHELAALPFKTSEGRQYFAAMSA 286
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNR +T R AF + + + +IYDV+HNIAK E H DGK+ LLV
Sbjct: 287 AANYAWVNRQIITHQVRTAFEQVYPDLMAGQSIDLIYDVAHNIAKEEVH--DGKK--LLV 342
Query: 241 HRKVSEPSHP 250
HRK + P
Sbjct: 343 HRKGGTRAFP 352
>gi|339236909|ref|XP_003380009.1| hypothetical protein Tsp_05733 [Trichinella spiralis]
gi|316977248|gb|EFV60375.1| hypothetical protein Tsp_05733 [Trichinella spiralis]
Length = 235
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 66/73 (90%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVGS+GIIP+N RD EE LEMGMDW+LREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 158 LFDFIPVGVGSRGIIPINGRDFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLEADPAK 217
Query: 61 VSMRAKKRGLPQL 73
VS RAKKRGLPQ+
Sbjct: 218 VSTRAKKRGLPQV 230
>gi|73696614|gb|AAZ81019.1| HSPC117 [Macaca mulatta]
Length = 75
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 68/75 (90%)
Query: 165 RINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIA 224
RI S EGQDYLK MAAA N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIA
Sbjct: 1 RIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIA 60
Query: 225 KTEEHMVDGKQKTLL 239
K E+H+VDGK++TLL
Sbjct: 61 KVEQHVVDGKERTLL 75
>gi|338732566|ref|YP_004671039.1| hypothetical protein SNE_A06710 [Simkania negevensis Z]
gi|336481949|emb|CCB88548.1| UPF0027 protein TK0358 [Simkania negevensis Z]
Length = 475
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 138/245 (56%), Gaps = 21/245 (8%)
Query: 1 MFDHIPVGVG--SKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADP 58
+++ +P GVG KG ++ +D + ++ G +S+ GY + +D EH E +G + AD
Sbjct: 122 IYEIVPSGVGRGQKGKKALSQKDYQTLVKQGARYSIELGYGFPQDLEHIESHGCIEGADL 181
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+ VS A +RG QLGT+G+GNH+ EI V + AS GIE+ G MIHSGSRG
Sbjct: 182 AAVSEHALERGRDQLGTIGSGNHFVEIGEVQRVLLADVASAWGIEE-GMTYAMIHSGSRG 240
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQV C+ D L K + + DRQL A INS EG+ Y M
Sbjct: 241 FGHQV----CQ----------DTLNIFIKKGFHEGLP--DRQLVAAPINSGEGRAYFAGM 284
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAAANFA+ NR + RQAF N +++ + IYDV HNIAK E H ++G+Q+ +
Sbjct: 285 AAAANFAFNNRQQILHEVRQAFHDVCNVKMEEVRL--IYDVCHNIAKFETHWIEGEQRKV 342
Query: 239 LVHRK 243
VHRK
Sbjct: 343 CVHRK 347
>gi|429963038|gb|ELA42582.1| hypothetical protein VICG_00334 [Vittaforma corneae ATCC 50505]
Length = 526
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 146/285 (51%), Gaps = 55/285 (19%)
Query: 2 FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
F+ IPV K I P L L+ GM++ L+ G + ED + E G L + +
Sbjct: 142 FEDIPV---EKRISP---EHLNGILDEGMEYLLKIGRVCKEDLDFTESRGS-LEGNSRII 194
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
+ +AK RG LGTLG+GNHY EI++VD+I D+ A K+GIE+ GQ+ + IH+GSRG GH
Sbjct: 195 NQKAKSRGSSHLGTLGSGNHYLEIEVVDQICDEAIAKKLGIEE-GQIVISIHTGSRGLGH 253
Query: 122 QVATGKCEKITCMAYVFPDALV-----------------------------------QME 146
+ E++ + + L+ + +
Sbjct: 254 GCCSDILEEMK-QSNIDTTQLIKDRTKEEFKKISENDSLSKEEKKVEYEKITQKFRQEKK 312
Query: 147 KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNT 206
+AM + IET L S+ GQ YLK+M +A+NFAW NRS +T R+ F++ F
Sbjct: 313 EAMTKKEIET----LEFVPFRSEIGQKYLKTMNSASNFAWANRSVITEKVRKVFSQVF-- 366
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
++++ +IYDV HN+AK E+ +DG++ L++ + S PG
Sbjct: 367 --PEVEIKLIYDVCHNVAKIEK--IDGRE-YLILRKGASRILPPG 406
>gi|295822063|gb|ADG36685.1| hypothetical protein [Odontobutis potamophila]
gi|295822065|gb|ADG36686.1| hypothetical protein [Micropercops swinhonis]
gi|295822067|gb|ADG36687.1| hypothetical protein [Rhinogobius giurinus]
gi|295822071|gb|ADG36689.1| hypothetical protein [Hypophthalmichthys nobilis]
Length = 67
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/67 (88%), Positives = 64/67 (95%)
Query: 27 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQ 86
EMG+DWSLREGY WAEDKEHCEEYGRML ADP+KVS +AKKRGLPQLGTLGAGNHYAEIQ
Sbjct: 1 EMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQ 60
Query: 87 IVDEIYD 93
+VDEIY+
Sbjct: 61 VVDEIYN 67
>gi|295822073|gb|ADG36690.1| hypothetical protein [Larimichthys crocea]
Length = 66
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 63/66 (95%)
Query: 27 EMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQ 86
EMG+DWSLREGY WAEDKEHCEEYGRML ADP+KVS +AKKRGLPQLGTLGAGNHYAEIQ
Sbjct: 1 EMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQ 60
Query: 87 IVDEIY 92
+VDEIY
Sbjct: 61 VVDEIY 66
>gi|312087806|ref|XP_003145616.1| hypothetical protein LOAG_10041 [Loa loa]
Length = 218
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 63/72 (87%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIP+ A EE LEMGMDW+LREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFDHIPVGVGSKGIIPIGALQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADAAK 206
Query: 61 VSMRAKKRGLPQ 72
VS RAKKRGLPQ
Sbjct: 207 VSPRAKKRGLPQ 218
>gi|6807709|emb|CAB70670.1| hypothetical protein [Homo sapiens]
Length = 197
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 4/80 (5%)
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
MAAA N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++T
Sbjct: 2 MAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERT 61
Query: 238 LLVHRKVSE----PSHPGVS 253
LLVHRK S P HP ++
Sbjct: 62 LLVHRKGSTRAFPPHHPLIA 81
>gi|374635420|ref|ZP_09707019.1| protein of unknown function UPF0027 [Methanotorris formicicus
Mc-S-70]
gi|373562293|gb|EHP88508.1| protein of unknown function UPF0027 [Methanotorris formicicus
Mc-S-70]
Length = 1930
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/134 (47%), Positives = 90/134 (67%), Gaps = 14/134 (10%)
Query: 110 VMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSK 169
V+ ++GSRG GHQ+ D + MEKA K+ I+ DRQLACA I S+
Sbjct: 1681 VVSNTGSRGLGHQICA--------------DYIRVMEKAAKKYGIKLPDRQLACAPIESE 1726
Query: 170 EGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 229
EG +Y K+M+ AN+AW NR +T R++F K F T+ +DL+M++IYDV+HNIAK EEH
Sbjct: 1727 EGIEYYKAMSCGANYAWTNRQMITHWVRESFEKVFKTSAEDLEMNIIYDVAHNIAKMEEH 1786
Query: 230 MVDGKQKTLLVHRK 243
++DGK+K ++VHRK
Sbjct: 1787 VIDGKKKKVVVHRK 1800
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/131 (45%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + ++++ LE G W++ EGY W ED + EE+G M +AD S
Sbjct: 1104 IFKNVPSGLGSKGKIRITKNEIDDVLEEGAKWAINEGYGWEEDIKFIEEHGYMKDADASL 1163
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ EIQ VD+++D+ G+E+ QV VM+H
Sbjct: 1164 VSDSAKKRGLPQLGSLGSGNHFLEIQYVDKVFDEETGEIFGVEE-NQVVVMVHCLPESSK 1222
Query: 121 HQVATGKCEKI 131
G C KI
Sbjct: 1223 ILTEYGYCIKI 1233
>gi|188584797|ref|YP_001916342.1| hypothetical protein Nther_0155 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349484|gb|ACB83754.1| protein of unknown function UPF0027 [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 462
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 138/244 (56%), Gaps = 29/244 (11%)
Query: 8 GVGSKG-IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAK 66
GVG K + + D++ LE G+ + +R+G+ ED +H E+ G + D S +S A
Sbjct: 127 GVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGNMEDLDHIEDGGVISEGDSSVLSHEAV 186
Query: 67 KRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG 126
KR QL TLG+GNH+ EI +++ +++ A+ +GI + G+VC +IH+GSRG GHQV
Sbjct: 187 KRAKEQLATLGSGNHFIEICLLETDFNQKEANDLGI-NYGKVCFLIHTGSRGIGHQV--- 242
Query: 127 KCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAW 186
C Y + +M+KA+K+D + LA A I S G++Y +MAAA+NFA+
Sbjct: 243 ------CTEY-----MDRMKKALKKDRQPLPTKGLAYAEIKSPLGREYFSAMAAASNFAF 291
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE 246
NR +T +A + N +IYDV HNIAK E +D ++ LLVHRK +
Sbjct: 292 ANRQLLTTAIEEAIGCKTN---------LIYDVPHNIAKFE--TIDNQK--LLVHRKGAT 338
Query: 247 PSHP 250
+ P
Sbjct: 339 RAFP 342
>gi|156330305|ref|XP_001619090.1| hypothetical protein NEMVEDRAFT_v1g9434 [Nematostella vectensis]
gi|156201554|gb|EDO26990.1| predicted protein [Nematostella vectensis]
Length = 65
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 58/65 (89%)
Query: 166 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAK 225
I S EGQDYLK MA AAN+AWVNRSSMTFL RQAFAK FN+TPDDLDMH+IYDVSHNIAK
Sbjct: 1 IKSPEGQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAK 60
Query: 226 TEEHM 230
EEH+
Sbjct: 61 VEEHV 65
>gi|83317934|ref|XP_731376.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23491399|gb|EAA22941.1| Uncharacterized protein family UPF0027 [Plasmodium yoelii yoelii]
Length = 196
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M AA NFA +NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK +
Sbjct: 1 MGAACNFAXINRSSMTFLARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQN 60
Query: 238 LLVHRKVSE----PSHPGV 252
LLVHRK S P HP V
Sbjct: 61 LLVHRKGSTRAFPPFHPLV 79
>gi|300707248|ref|XP_002995841.1| hypothetical protein NCER_101173 [Nosema ceranae BRL01]
gi|239605064|gb|EEQ82170.1| hypothetical protein NCER_101173 [Nosema ceranae BRL01]
Length = 464
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 18/235 (7%)
Query: 17 MNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTL 76
++ DL L+ G+++ +++ +I ++ E E G K+S ++K +G+ Q G+L
Sbjct: 128 ISLEDLNGVLDCGLEYLVKKQFITPDNLEFTESNGNYKGCS-RKISQKSKGKGVNQFGSL 186
Query: 77 GAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAY 136
G+GNHY EI+ VD+++D+ + + + + Q+ + IHSGSRG GH V K + + +
Sbjct: 187 GSGNHYLEIEYVDKVFDRERCNILNLRE-NQIVISIHSGSRGLGHSVC-----KESLIKF 240
Query: 137 VFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
L +K NI N+ R ++K +Y+ +MA+A N+A+ NR+ +
Sbjct: 241 NNEVKLKNNGGFLKDSNISINES--VYLRADNKLSIEYMNAMASACNYAFGNRA----MI 294
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
++ K L+ +IYD SHNIAK E + +L++ + S PG
Sbjct: 295 QEKVIKSLKRIFPYLETELIYDTSHNIAKIETDL-----NSLVIRKGASRILEPG 344
>gi|269859414|ref|XP_002649432.1| RTCB protein [Enterocytozoon bieneusi H348]
gi|220067195|gb|EED44662.1| RTCB protein [Enterocytozoon bieneusi H348]
Length = 455
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 125/264 (47%), Gaps = 56/264 (21%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKE---------HCEEYG 51
++ IP G + I + +D++ L G+ + + +I +D + + E+Y
Sbjct: 128 LYKFIPCGT-ERTCINLTHKDIKNILLNGIKGIIGKNFIIKKDNQEIILNSLYKNIEDYS 186
Query: 52 RMLNAD--PSKVSMRAKK---RGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVG 106
+ N PS + + +G+ +GTLGAGNHY EIQ VDE+++ ++ ++ +
Sbjct: 187 SVENCGSLPSSIDNITQAQLGKGISMIGTLGAGNHYLEIQRVDEVFEPYSEFEIDDIIIF 246
Query: 107 QVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARI 166
H GSR G ++ CEKI+ D +
Sbjct: 247 I-----HCGSRSLGSAISEAYCEKIS-------DLFIDFY-------------------- 274
Query: 167 NSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKT 226
S+ GQ+Y +SM AAAN+A+VNR ++ + F ++F D + +I D HNIAK
Sbjct: 275 -SENGQNYFESMNAAANYAFVNREFISMIINNVFKEEF----ADFQLKIITDTGHNIAKI 329
Query: 227 EEHMVDGKQKTLLVHRKVSEPSHP 250
E ++DGK+ L+HRK + S+P
Sbjct: 330 E--IIDGKE--YLIHRKGASRSYP 349
>gi|440492591|gb|ELQ75143.1| hypothetical protein THOM_1873 [Trachipleistophora hominis]
Length = 521
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 145/301 (48%), Gaps = 61/301 (20%)
Query: 1 MFDHIPVGVGS-----------------------KGIIPMNARDLEEALEMGMDWSLREG 37
+FD IP G+G+ K ++ + + + E G+D+ ++ G
Sbjct: 131 LFDVIPSGIGADTANATVSEIAEQLNKNVADTSNKEMVFTDLKVINEICNEGIDFLVKYG 190
Query: 38 YIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAA 97
I ++++ E+ GR D +S +AK +GL QLG+LGAGNH+ E+Q V E++D A
Sbjct: 191 -IVGDERDRIEKGGR-FPGDSRMLSQKAKAKGLKQLGSLGAGNHFLELQRVVEVHDNDA- 247
Query: 98 SKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPD-------ALVQMEKAMK 150
G E + ++ MIH+GSRG G +V + T M + + Q+++AM
Sbjct: 248 ---GFE-IDELVFMIHTGSRGLGFEVCESASQVATSMRSISKSEIGDESHEIRQVKQAMG 303
Query: 151 -RDNIETNDRQLACARINS---------KEGQDYLKSMAAAANFAWVNRSSMTFLCRQAF 200
+N ET + +++ S E +DY+ M AANFA+ NR+ ++
Sbjct: 304 LYENDETTVSSVNSSQLGSFENLSYFEIHESEDYILEMGCAANFAFCNRAIISKKVENVL 363
Query: 201 AKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS----EPSHPGVSRNK 256
K +N + ++YDV HN E +DGK+ L VHRK + P+HP + N+
Sbjct: 364 -KNWN-----IKCELVYDVGHNSLHKEN--IDGKE--LFVHRKGAARALPPNHPELRSNR 413
Query: 257 K 257
+
Sbjct: 414 E 414
>gi|398813268|ref|ZP_10571968.1| hypothetical protein PMI05_00362 [Brevibacillus sp. BC25]
gi|398039157|gb|EJL32300.1| hypothetical protein PMI05_00362 [Brevibacillus sp. BC25]
Length = 514
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 114/248 (45%), Gaps = 45/248 (18%)
Query: 10 GSKGIIPMNARDLEEALE-MGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
G KG+ D EEA E + +S E Y + D E+ + ++ R
Sbjct: 179 GLKGLPSNYIPDTEEAPETLRRSFSHVEKYTFEFDHSFLEQ-----------IPQKSWSR 227
Query: 69 GLPQLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
G QLGTLG GNH+ EIQ +D EI W G+ D GQV +MIHSGSR +G
Sbjct: 228 GWGQLGTLGGGNHFIEIQHIDIAEENREIAKAW-----GLFD-GQVVIMIHSGSRAWG-- 279
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
A + D ++AM + I + L A I S+EGQ YL M +A
Sbjct: 280 ------------AMLGRDYTKSFKEAMYKWGIHNPEPSLVYAPIQSEEGQQYLNLMYSAL 327
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NFA NR + F QAF F + ++ V+YD+ HN A E H + +LVHR
Sbjct: 328 NFAVTNRHMIGFSVEQAFRDVFGS---EMRTPVLYDLMHNYALKEFH----RNTPMLVHR 380
Query: 243 KVSEPSHP 250
K + + P
Sbjct: 381 KGATKALP 388
>gi|379724224|ref|YP_005316355.1| hypothetical protein PM3016_6585 [Paenibacillus mucilaginosus 3016]
gi|378572896|gb|AFC33206.1| hypothetical protein PM3016_6585 [Paenibacillus mucilaginosus 3016]
Length = 483
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 27/188 (14%)
Query: 68 RGLPQLGTLGAGNHYAEIQIVDEIYDKWA-ASKMGIEDVGQVCVMIHSGSRGFGHQVATG 126
RG QLGTLG+GNH+AEIQ ++ + A A + G++D GQ+ VMIHSGSR +G G
Sbjct: 196 RGHRQLGTLGSGNHFAEIQALEIPEEARATAEQWGLKD-GQIIVMIHSGSRAWG-----G 249
Query: 127 KCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAW 186
++ A ++ K M+ + T D +LA A ++S+ GQ YL M +A N+A
Sbjct: 250 AVNEL---------AGREVAKWMRSSGMGTADPKLAFAPLDSEAGQLYLHLMYSALNYAV 300
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS- 245
VNR + + R+A F + +M +YD+ HN A EEH + + VHRK +
Sbjct: 301 VNRHLIAYAIREAAKDVFGSR---FEMRTLYDLMHNYAWEEEH----EGEAYFVHRKGAT 353
Query: 246 ---EPSHP 250
P HP
Sbjct: 354 RALPPGHP 361
>gi|295822069|gb|ADG36688.1| hypothetical protein [Hypophthalmichthys molitrix]
Length = 50
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/50 (88%), Positives = 48/50 (96%)
Query: 44 KEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
KEHCEEYGRML ADP+KVS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+
Sbjct: 1 KEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYN 50
>gi|429963953|gb|ELA45951.1| hypothetical protein VCUG_02559 [Vavraia culicis 'floridensis']
Length = 514
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 63/298 (21%)
Query: 1 MFDHIPVGVG---------------SKGIIPMNARD--------LEEALEMGMDWSLREG 37
+FD IP G+G +KG+ R + E G+D+ ++ G
Sbjct: 132 LFDAIPSGIGGDTVNTIIDEIVNALNKGVADTQNRRAAFTDMKLINEVCNEGVDFLVKHG 191
Query: 38 YIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAA 97
I +++++ E GR +D +S +AK +GL QLG+LGAGNH+ EIQ V E+YD A
Sbjct: 192 -IVSDERDRIERGGR-FPSDSRMLSQKAKAKGLKQLGSLGAGNHFLEIQRVAEVYDNDAD 249
Query: 98 SKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETN 157
V ++ MIH+GSRG G +V CE T +A + + E + +I+
Sbjct: 250 FA-----VDELVFMIHTGSRGLGFEV----CESATQVA-ASTRCITESEIGNESHDIQAV 299
Query: 158 DRQLA--------------CARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQ 203
+ + + + E +DYL M AAN+A+ NR+ ++ + Q
Sbjct: 300 RKSIGLCSASISASGSSENLSYFEAHESEDYLLEMGCAANYAFCNRAIISKKVEEVLG-Q 358
Query: 204 FNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS----EPSHPGVSRNKK 257
+N + ++YDV HN E +DG++ VHRK + P+HP + N++
Sbjct: 359 WN-----VKCELVYDVGHNSLIREN--IDGRE--CFVHRKGAARALPPNHPELRCNRE 407
>gi|337751210|ref|YP_004645372.1| hypothetical protein KNP414_06990 [Paenibacillus mucilaginosus
KNP414]
gi|336302399|gb|AEI45502.1| hypothetical protein KNP414_06990 [Paenibacillus mucilaginosus
KNP414]
Length = 483
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 27/188 (14%)
Query: 68 RGLPQLGTLGAGNHYAEIQIVDEIYDKWA-ASKMGIEDVGQVCVMIHSGSRGFGHQVATG 126
RG QLGTLG+GNH+AEIQ ++ + A A + G++D GQ+ VMIHSGSR +G G
Sbjct: 196 RGHRQLGTLGSGNHFAEIQALEIPEEARATAEQWGLKD-GQIIVMIHSGSRAWG-----G 249
Query: 127 KCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAW 186
++ A ++ K M+ + T D +LA A ++S+ GQ YL M +A N+A
Sbjct: 250 AVNEL---------AGREVAKWMRGSGMGTADPKLAFAPLDSEAGQLYLHLMYSALNYAV 300
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS- 245
VNR + + R+A F + +M +YD+ HN A EEH + VHRK +
Sbjct: 301 VNRHLIAYAIREAAKDVFGSR---FEMRTLYDLMHNYAWEEEH----GGEAYFVHRKGAT 353
Query: 246 ---EPSHP 250
P HP
Sbjct: 354 RALPPGHP 361
>gi|312144051|ref|YP_003995497.1| hypothetical protein Halsa_1722 [Halanaerobium hydrogeniformans]
gi|311904702|gb|ADQ15143.1| protein of unknown function UPF0027 [Halanaerobium
hydrogeniformans]
Length = 439
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 32/240 (13%)
Query: 5 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE-DKEHCEEYGRMLNADPSKVSM 63
IP GVG + N + ++ + G+ + + E I + D + CE+ G + AD V
Sbjct: 115 IPAGVGEERENNFNKNEFKKIVTHGVPYLVNEKGIGNKNDIDSCEDNGFIKGADADAVPE 174
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A +R QL TLG+GNH+ E+Q V E+Y A G+ + GQ+ MIH+GSR FGHQ+
Sbjct: 175 KAIERAFNQLATLGSGNHFLELQRVKEVY----AEDCGLFE-GQLVFMIHTGSRAFGHQI 229
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A K+ + T + LA +I+S+ G +Y K+MAAAAN
Sbjct: 230 AK------------------HYSNIAKKSGVATPTKNLASFKIDSEGGINYKKAMAAAAN 271
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FA+ NR + R + + DL YD++HNIAK E + G++ +LVHRK
Sbjct: 272 FAFANRHLIAHKLRHIIKEFYPKESFDL----FYDITHNIAKKE--LYQGEE--VLVHRK 323
>gi|310643428|ref|YP_003948186.1| hypothetical protein [Paenibacillus polymyxa SC2]
gi|309248378|gb|ADO57945.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 497
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 91/186 (48%), Gaps = 32/186 (17%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSR 117
R R QLGTLG GNH+ EIQ ++ E+ + W G+ D GQV VMIHSGSR
Sbjct: 204 RTWHRAHRQLGTLGGGNHFVEIQAIEIAEENREVAEAW-----GMFD-GQVAVMIHSGSR 257
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
+G V+ I KAM R + T+D +L A +N E Y+
Sbjct: 258 AWGGAVSQTSSSAIA--------------KAMSRLGLGTSDPRLVFAPLNHPEAAHYVDM 303
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M +A N+A VNR + + R+AF F T ++ +YD+ HN A E H G +
Sbjct: 304 MYSALNYAVVNRHLIAYSVREAFRDVFGT---KCELRTLYDLMHNYAWEESHSDHG---S 357
Query: 238 LLVHRK 243
+ VHRK
Sbjct: 358 VFVHRK 363
>gi|418489529|ref|YP_007003344.1| hypothetical protein [Bacillus phage SP10]
gi|340545176|dbj|BAK52899.1| hypothetical protein [Bacillus phage SP10]
Length = 502
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 43/254 (16%)
Query: 6 PVGVGSKGI--IP----MNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
P + +KG+ +P N D+E G D E + A +H + G++ N D S
Sbjct: 157 PWHIATKGLGGVPSEFFFNESDIENVEISGFDL---EDDVKAYLDKHGQ--GKLFNRD-S 210
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGS 116
KV + QLGTLG GNH+ E+Q I DE ++ A K G+ D GQ+ M+HSGS
Sbjct: 211 KVFTSVRD----QLGTLGGGNHFIEVQSASIEDE--NRETAKKWGLFD-GQIVFMVHSGS 263
Query: 117 RGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLK 176
RGFG + DA+ ++ M R +E+ D L A NS+ GQDY
Sbjct: 264 RGFGARAGR--------------DAVKAFKEEMYRWGVESPDPNLVFAPFNSEVGQDYYT 309
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+ A+ N+A NR + + QAF + + ++ ++YD+ HN A+ E H +
Sbjct: 310 MLRASLNYAVANRHMIAYGVSQAFR---DVMGEHVETELLYDLMHNYAQVEFH----RNS 362
Query: 237 TLLVHRKVSEPSHP 250
+VHRK + + P
Sbjct: 363 PHIVHRKGATRALP 376
>gi|392304191|emb|CCI70554.1| UPF0027 protein [Paenibacillus polymyxa M1]
Length = 457
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 91/186 (48%), Gaps = 32/186 (17%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSR 117
R R QLGTLG GNH+ EIQ ++ E+ + W G+ D GQV VMIHSGSR
Sbjct: 164 RTWHRAHRQLGTLGGGNHFVEIQAIEIAEENREVAEAW-----GMFD-GQVAVMIHSGSR 217
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
+G V+ I KAM R + T+D +L A +N E Y+
Sbjct: 218 AWGGAVSQTSSSAIA--------------KAMSRLGLGTSDPRLVFAPLNHPEAAHYVDM 263
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M +A N+A VNR + + R+AF F T ++ +YD+ HN A E H G +
Sbjct: 264 MYSALNYAVVNRHLIAYSVREAFRDVFGT---KCELRTLYDLMHNYAWEESHSDHG---S 317
Query: 238 LLVHRK 243
+ VHRK
Sbjct: 318 VFVHRK 323
>gi|374604206|ref|ZP_09677173.1| hypothetical protein PDENDC454_14627 [Paenibacillus dendritiformis
C454]
gi|374390192|gb|EHQ61547.1| hypothetical protein PDENDC454_14627 [Paenibacillus dendritiformis
C454]
Length = 521
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 31/203 (15%)
Query: 53 MLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVD-EIYDKWAASKMGIEDVGQVCVM 111
MLN P+ R+ + QLGTLG GNH+AEIQ V+ + ++ A G+ D GQV VM
Sbjct: 223 MLNEMPAAAWHRSHR----QLGTLGGGNHFAEIQAVEIDESNRDTAEAWGLFD-GQVIVM 277
Query: 112 IHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEG 171
IHSGSR +G V+ +C K +M + M+ + T D +L A ++
Sbjct: 278 IHSGSRAWGGAVSQ-QCSK-------------EMAQWMRSAGVGTADPRLVFAPLSEPVA 323
Query: 172 QDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 231
+ Y+ M +A N+A VNR M F R+AF + ++M +YD+ HN A E H
Sbjct: 324 ERYVHLMYSALNYAVVNRHLMAFGIREAFRDVLGS---KVEMTTLYDLMHNYAWEESH-- 378
Query: 232 DGKQKTLLVHRKVSE----PSHP 250
+G++ + VHRK + P HP
Sbjct: 379 NGRR--MFVHRKGATRALPPHHP 399
>gi|167945336|ref|ZP_02532410.1| hypothetical protein Epers_01970 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 145
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 110 VMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSK 169
+ IH GSRG GHQ+ T + L M K I DR+LACA I SK
Sbjct: 5 ISIHCGSRGLGHQIGT--------------EFLKFMATKAKDHGIWLPDRELACAPIESK 50
Query: 170 EGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 229
GQ YL +M A N A NR +T L R+ T + ++YDVSHN K E H
Sbjct: 51 LGQSYLGAMRAGINCALANRQILTHLTREVCDDVLPGT----QLTLLYDVSHNTCKRETH 106
Query: 230 MVDGKQKTLLVHRKVSE----PSHP 250
+DGK+K L VHRK + P HP
Sbjct: 107 RIDGKEKQLFVHRKGATLALGPGHP 131
>gi|374325256|ref|YP_005078385.1| hypothetical protein HPL003_27250 [Paenibacillus terrae HPL-003]
gi|357204265|gb|AET62162.1| hypothetical protein HPL003_27250 [Paenibacillus terrae HPL-003]
Length = 485
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 89/186 (47%), Gaps = 32/186 (17%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSR 117
R R QLGTLG GNH+ EIQ ++ EI + W G+ D GQV VM+HSGSR
Sbjct: 192 RTWHRAHRQLGTLGGGNHFVEIQAIEIAEHNREIAEAW-----GMFD-GQVAVMVHSGSR 245
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
+G V+ I KAM R + T+D +L A + E Y+
Sbjct: 246 AWGGAVSQTSSSAIA--------------KAMGRLGLGTSDPRLVFAPLEHPEAAHYINM 291
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M +A N+A VNR + F R+AF F T ++ +YD+ HN E H G +
Sbjct: 292 MYSALNYAVVNRHLIAFSVREAFRDVFGT---KCELRTLYDLMHNYGWEESHPDHG---S 345
Query: 238 LLVHRK 243
+ VHRK
Sbjct: 346 VFVHRK 351
>gi|226313516|ref|YP_002773410.1| hypothetical protein BBR47_39290 [Brevibacillus brevis NBRC 100599]
gi|226096464|dbj|BAH44906.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 478
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 116/263 (44%), Gaps = 58/263 (22%)
Query: 15 IPMNARD--------LEEALEMGMDWSLREGYI---------WAEDKEHCEEYGRMLN-A 56
+P N R LEE ++ G+ L YI ++ H E+Y + +
Sbjct: 121 VPTNERGNTHFTDIRLEEVVKHGLQ-GLPSNYIPDTEAAPDTFSRSFSHVEKYTFEFDHS 179
Query: 57 DPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCV 110
++ ++ R QLGTLG GNH+ EIQ ++ EI W G+ D GQV +
Sbjct: 180 FLEQIPQKSWSRAWGQLGTLGGGNHFIEIQHIEIAEENREIAKAW-----GLFD-GQVVI 233
Query: 111 MIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKE 170
MIHSGSR +G A + D ++ M + I + L A I S+E
Sbjct: 234 MIHSGSRAWG--------------AMLGRDYTKSFKEVMYKWGIHNPEPSLVYAPIQSEE 279
Query: 171 GQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQF---NTTPDDLDMHVIYDVSHNIAKTE 227
GQ YL M +A NFA NR + F QAF F TP V+YD+ HN A E
Sbjct: 280 GQQYLNLMYSALNFAVTNRHMIGFSVEQAFRDIFGRETRTP------VLYDLMHNYALKE 333
Query: 228 EHMVDGKQKTLLVHRKVSEPSHP 250
H + +LVHRK + + P
Sbjct: 334 SH----RNTPVLVHRKGATKALP 352
>gi|308070237|ref|YP_003871842.1| hypothetical protein PPE_03487 [Paenibacillus polymyxa E681]
gi|305859516|gb|ADM71304.1| UPF0027 protein TK0358 [Paenibacillus polymyxa E681]
Length = 485
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 90/182 (49%), Gaps = 24/182 (13%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
R R QLGTLG GNH+ EIQ + EI ++ A G+ D GQV VMIHSGSR +G
Sbjct: 192 RTWHRAHRQLGTLGGGNHFVEIQTI-EIAEENRETAEAWGMFD-GQVAVMIHSGSRAWGG 249
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
V+ I K M R + T+D +L A ++ E Y+ M +A
Sbjct: 250 AVSQASSSAIA--------------KVMSRLGLGTSDPRLVFAPLDHPEAAHYVDMMYSA 295
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
N+A VNR + + R+AF F T ++ +YD+ HN A E H G ++ VH
Sbjct: 296 LNYAVVNRHLIAYSVREAFRDVFGT---KCELRTLYDLMHNYAWEESHSDHG---SVFVH 349
Query: 242 RK 243
RK
Sbjct: 350 RK 351
>gi|375309743|ref|ZP_09775023.1| hypothetical protein WG8_3548 [Paenibacillus sp. Aloe-11]
gi|375078107|gb|EHS56335.1| hypothetical protein WG8_3548 [Paenibacillus sp. Aloe-11]
Length = 466
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 91/182 (50%), Gaps = 24/182 (13%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYD--KWAASKMGIEDVGQVCVMIHSGSRGFGH 121
R R QLGTLG GNH+ EIQ + EI + + A G+ D GQV VMIHSGSR +G
Sbjct: 173 RTWHRAHRQLGTLGGGNHFVEIQAI-EIAEENRKTAEAWGMFD-GQVAVMIHSGSRAWGG 230
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
V+ I KAM R + T+D +L A ++ E Y+ M +A
Sbjct: 231 AVSQTSSSAIA--------------KAMGRLGLGTSDPRLVFAPLDHPEAVHYVDMMYSA 276
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
N+A VNR + + R+AF F T ++ +YD+ HN A E H G ++ VH
Sbjct: 277 LNYAVVNRHLIAYSVREAFRDVFGT---KCELRTLYDLMHNYAWKESHPEHG---SVFVH 330
Query: 242 RK 243
RK
Sbjct: 331 RK 332
>gi|222530149|ref|YP_002574031.1| hypothetical protein Athe_2183 [Caldicellulosiruptor bescii DSM
6725]
gi|222456996|gb|ACM61258.1| protein of unknown function UPF0027 [Caldicellulosiruptor bescii
DSM 6725]
Length = 451
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 117/264 (44%), Gaps = 47/264 (17%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D IP GVG K I ++ EE L+ DK+ ++ + D +
Sbjct: 112 DLIPTGVGKKNKKIALSKTKYEEYLQNT-----------EIDKDISDKMVLIHEFDLDTI 160
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
A + G Q TLG GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG
Sbjct: 161 PDEAHEIGKEQFATLGGGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGA 218
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
+ +K F D MK I T D QL I++K +DY+K+M +A
Sbjct: 219 VIGDYYQKK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA 264
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE-----EHMVDGKQK 236
A +A +NR M+ K +D V+YDV+HNIA E E +V K
Sbjct: 265 AIYAKINRHYMSNFIISVLEKH------SIDAWVLYDVAHNIAYMERFANREKLVIRKGA 318
Query: 237 T--------LLVHRKVSEPSHPGV 252
T L+ + K +E HP +
Sbjct: 319 TRALPPNHYLIPNPKFAETGHPVI 342
>gi|312621558|ref|YP_004023171.1| hypothetical protein Calkro_0452 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202025|gb|ADQ45352.1| protein of unknown function UPF0027 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 451
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 117/264 (44%), Gaps = 47/264 (17%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D IP GVG K I ++ EE L+ DK+ ++ + D +
Sbjct: 112 DLIPTGVGKKNKKIALSKTKYEEYLQNT-----------EIDKDISDKMVLIHEFDLDTI 160
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
A + G Q TLG GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG
Sbjct: 161 PDEAYEIGKEQFATLGGGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGA 218
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
+ +K F D MK I T D QL I++K +DY+K+M +A
Sbjct: 219 VIGDYYQKK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA 264
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE-----EHMVDGKQK 236
A +A +NR M+ K +D V+YDV+HNIA E E +V K
Sbjct: 265 AIYAKINRHYMSNFIISVLEKH------SIDAWVLYDVAHNIAYMERFANREKLVIRKGA 318
Query: 237 T--------LLVHRKVSEPSHPGV 252
T L+ + K +E HP +
Sbjct: 319 TRALPPNHYLIPNPKFAETGHPVI 342
>gi|390454999|ref|ZP_10240527.1| hypothetical protein PpeoK3_13329 [Paenibacillus peoriae KCTC 3763]
Length = 466
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 91/186 (48%), Gaps = 32/186 (17%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSR 117
R R QLGTLG GNH+ EIQ ++ +I + W G+ D GQV VMIHSGSR
Sbjct: 173 RTWHRAHRQLGTLGGGNHFVEIQAIEIAEENRKIAEAW-----GMFD-GQVAVMIHSGSR 226
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
+G V+ I KAM R + T+D +L A ++ E Y+
Sbjct: 227 AWGGAVSQTSSSAIA--------------KAMGRLGLGTSDPRLVFAPLDHPEAVHYVDM 272
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M +A N+A VNR + + R+AF F T ++ +YD+ HN A E H G +
Sbjct: 273 MYSALNYAVVNRHLIAYSVREAFHDVFGT---KCELRTLYDLMHNYAWKESHPEHG---S 326
Query: 238 LLVHRK 243
+ VHRK
Sbjct: 327 VFVHRK 332
>gi|47208544|emb|CAF89494.1| unnamed protein product [Tetraodon nigroviridis]
Length = 531
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 51/73 (69%), Gaps = 8/73 (10%)
Query: 186 WVNRSSMTF----LCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
W R + L QAF+K F TTPDDLDMHVIYDVSHNIAK EEH+VDG+Q+TLLVH
Sbjct: 340 WAGRGAGPARSHQLSSQAFSKVFATTPDDLDMHVIYDVSHNIAKVEEHVVDGRQRTLLVH 399
Query: 242 RKVS----EPSHP 250
RK S P HP
Sbjct: 400 RKGSTRAFPPHHP 412
>gi|399052727|ref|ZP_10741998.1| hypothetical protein PMI08_03559 [Brevibacillus sp. CF112]
gi|398049349|gb|EJL41774.1| hypothetical protein PMI08_03559 [Brevibacillus sp. CF112]
Length = 393
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 23/193 (11%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD-KWAASKMGIEDVGQVCVMIHSGSR 117
+ + ++ +R QLGTLG GNH+ EIQ ++ D + A + G+ D GQV +MIHSGSR
Sbjct: 182 AHIPAKSWQRAWGQLGTLGGGNHFIEIQSLEIAEDNREIAQEWGLFD-GQVVIMIHSGSR 240
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
+G A + D ++AM + IE + L A I+++EG+ YL
Sbjct: 241 AWG--------------AMLGRDYTKSFKEAMFKWGIENPEPSLVYAPIDTEEGKRYLNL 286
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M +A N+A VNR + + +AF + D V+YD+ HN A E H +
Sbjct: 287 MYSALNYAVVNRHLIGYAVERAFR---DVLGKDFSTPVLYDLMHNYALQEYH----RNTP 339
Query: 238 LLVHRKVSEPSHP 250
+LVHRK + + P
Sbjct: 340 MLVHRKGATKALP 352
>gi|379724293|ref|YP_005316424.1| hypothetical protein PM3016_6662 [Paenibacillus mucilaginosus 3016]
gi|378572965|gb|AFC33275.1| hypothetical protein PM3016_6662 [Paenibacillus mucilaginosus 3016]
Length = 472
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 118/251 (47%), Gaps = 42/251 (16%)
Query: 15 IPMNAR--------DLEEALEMGMDWSLREGYIWAED-KEHCEEYGRMLNADPSKVSM-- 63
+P N R D+ E ++ G+ L E Y+ E H E+ DP+ +
Sbjct: 123 VPTNERKNSNYEDIDVMEVVQHGLQ-GLPERYVPGERWLTHVEQAS--FAFDPAALEYLP 179
Query: 64 -RAKKRGLPQLGTLGAGNHYAEIQ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+K QLGTLG+GNH+ EIQ I +E D AA G+ D GQV VMIHSGSR +
Sbjct: 180 PNIRKNAHGQLGTLGSGNHFCEIQYLEIAEEHKDTAAA--WGLFD-GQVVVMIHSGSRAW 236
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G + + I AM+ + D + A I S EG+ YL M
Sbjct: 237 GAMLGREYTQVI--------------RGAMQSWGVTNPDPNVIYAPIGSTEGRTYLNLMN 282
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
+A NFA NR + F ++AF + F +++ V+YD+ HN A E H + + +L
Sbjct: 283 SALNFAVSNRHMIAFGVQEAFREVFGP---QMELPVLYDLMHNYALKEFH----RNQGML 335
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 336 VHRKGATRALP 346
>gi|337751291|ref|YP_004645453.1| hypothetical protein KNP414_07071 [Paenibacillus mucilaginosus
KNP414]
gi|336302480|gb|AEI45583.1| hypothetical protein KNP414_07071 [Paenibacillus mucilaginosus
KNP414]
Length = 472
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 118/251 (47%), Gaps = 42/251 (16%)
Query: 15 IPMNAR--------DLEEALEMGMDWSLREGYIWAED-KEHCEEYGRMLNADPSKVSM-- 63
+P N R D+ E ++ G+ L E Y+ E H E+ DP+ +
Sbjct: 123 VPTNERKNSNYEDIDVMEVVQHGLQ-GLPERYVPGERWLTHVEQASFAF--DPAALEYLP 179
Query: 64 -RAKKRGLPQLGTLGAGNHYAEIQ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+K QLGTLG+GNH+ EIQ I +E D AA G+ D GQV VMIHSGSR +
Sbjct: 180 PNIRKNAHGQLGTLGSGNHFCEIQYLEIAEEHKDTAAA--WGLFD-GQVVVMIHSGSRAW 236
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G + + I AM+ + D + A I S EG+ YL M
Sbjct: 237 GAMLGREYTQVI--------------RGAMQSWGVTNPDPNVIYAPIGSTEGRTYLNLMN 282
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
+A NFA NR + F ++AF + F +++ V+YD+ HN A E H + + +L
Sbjct: 283 SALNFAVSNRHMIAFGVQEAFREVFGP---QMELPVLYDLMHNYALKEFH----RNQGML 335
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 336 VHRKGATRALP 346
>gi|386727028|ref|YP_006193354.1| hypothetical protein B2K_33655 [Paenibacillus mucilaginosus K02]
gi|384094153|gb|AFH65589.1| hypothetical protein B2K_33655 [Paenibacillus mucilaginosus K02]
Length = 472
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 118/251 (47%), Gaps = 42/251 (16%)
Query: 15 IPMNAR--------DLEEALEMGMDWSLREGYIWAED-KEHCEEYGRMLNADPSKVSM-- 63
+P N R D+ E ++ G+ L E Y+ E H E+ DP+ +
Sbjct: 123 VPTNERKNSNYEDIDVMEVVQHGLK-GLPERYVPGERWLTHVEQAS--FAFDPAALEYLP 179
Query: 64 -RAKKRGLPQLGTLGAGNHYAEIQ---IVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+K QLGTLG+GNH+ EIQ I +E D AA G+ D GQV VMIHSGSR +
Sbjct: 180 PNIRKNAHGQLGTLGSGNHFCEIQYLEIAEEHKDTAAA--WGLFD-GQVVVMIHSGSRAW 236
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
G + + I AM+ + D + A I S EG+ YL M
Sbjct: 237 GAMLGREYTQVI--------------RGAMQSWGVTNPDPNVIYAPIGSTEGRTYLNLMN 282
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
+A NFA NR + F ++AF + F +++ V+YD+ HN A E H + + +L
Sbjct: 283 SALNFAVSNRHMIAFGVQEAFREVFGP---QMELPVLYDLMHNYALKEFH----RNQGML 335
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 336 VHRKGATRALP 346
>gi|344997173|ref|YP_004799516.1| hypothetical protein Calla_1965 [Caldicellulosiruptor lactoaceticus
6A]
gi|343965392|gb|AEM74539.1| protein of unknown function UPF0027 [Caldicellulosiruptor
lactoaceticus 6A]
Length = 451
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 103/226 (45%), Gaps = 34/226 (15%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D IP GVG K I ++ EE L+ DK+ ++ + D +
Sbjct: 112 DLIPTGVGKKNKKIALSKTKYEEYLQNT-----------EIDKDISDKMVLIHEFDLDTI 160
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
A + G Q TLG GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG
Sbjct: 161 PDEAYEIGKEQFATLGGGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGA 218
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
+ +K F D MK I T D QL I++K +DY+K+M +A
Sbjct: 219 VIGDYYQKK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA 264
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
A +A +NR M+ K +D V+YDV+HNIA E
Sbjct: 265 AIYAKINRHYMSNFIISVLEKH------SIDAWVLYDVAHNIAYME 304
>gi|310830881|ref|YP_003965982.1| hypothetical protein PPSC2_p0525 [Paenibacillus polymyxa SC2]
gi|309250348|gb|ADO59914.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 473
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 93/185 (50%), Gaps = 33/185 (17%)
Query: 72 QLGTLGAGNHYAEIQIVD------EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 125
QLGTLG GNH+ E+Q V+ E+ +KW G+ D GQV VMIHSGSR +G
Sbjct: 190 QLGTLGGGNHFIELQHVEIDEANHEVAEKW-----GLFD-GQVIVMIHSGSRAWG----- 238
Query: 126 GKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFA 185
A + + ++AM+ I D L A + S EGQ YL M +A NFA
Sbjct: 239 ---------AMLGREYTKLFKEAMEMWGISNPDPALMYAPMKSIEGQTYLNLMYSALNFA 289
Query: 186 WVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS 245
NR + + +Q F F + +M V+YD+ HN A E H + + +LVHRK +
Sbjct: 290 VSNRHMIAYGVQQGFRDIFGA---EFEMPVLYDLMHNYALKEFH----RNQAMLVHRKGA 342
Query: 246 EPSHP 250
+ P
Sbjct: 343 TRALP 347
>gi|312135864|ref|YP_004003202.1| hypothetical protein Calow_1873 [Caldicellulosiruptor owensensis
OL]
gi|311775915|gb|ADQ05402.1| protein of unknown function UPF0027 [Caldicellulosiruptor
owensensis OL]
Length = 451
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D IP GVG K I ++ EE L+ DK+ ++ + + D +
Sbjct: 112 DLIPTGVGKKNKRIVLSRAKYEEYLQNT-----------EIDKDISDKIVLIYDFDLDTI 160
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
A + G Q TLG GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG
Sbjct: 161 PDEAYEIGKEQFATLGGGNHFIEFQKL-YVLDKDIAQKWGLFD-GQFVVMIHSGSRRFGA 218
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
+ +K F D MK I T D QL I++K +DY+K+M +A
Sbjct: 219 VIGDYYQKK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA 264
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
A +A +NR M+ K +D V+YDV+HNIA E
Sbjct: 265 AIYAKINRHYMSNFIISVLEKH------SIDAWVLYDVAHNIAYME 304
>gi|312126809|ref|YP_003991683.1| hypothetical protein Calhy_0573 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776828|gb|ADQ06314.1| protein of unknown function UPF0027 [Caldicellulosiruptor
hydrothermalis 108]
Length = 451
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 117/264 (44%), Gaps = 47/264 (17%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D IP GVG K I ++ EE L+ DK+ ++ + D +
Sbjct: 112 DLIPTGVGKKNKKIALSKAKYEEYLQNT-----------EIDKDISDKMVLIHEFDLDTI 160
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
A + G Q TLG GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG
Sbjct: 161 PDEAYEIGKEQFATLGGGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGA 218
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
+ +K F D MK I T D QL I++K +DY+K+M +A
Sbjct: 219 VIGDYYQKK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA 264
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE-----EHMVDGKQK 236
A +A +NR M+ K +D V+YDV+HNIA E E +V K
Sbjct: 265 AIYAKINRHYMSNFIISVLEKH------SIDAWVLYDVAHNIAYMERFANREKLVIRKGA 318
Query: 237 T--------LLVHRKVSEPSHPGV 252
T L+ + K ++ HP +
Sbjct: 319 TRALPPNHYLIPNPKFADTGHPVI 342
>gi|357008866|ref|ZP_09073865.1| hypothetical protein PelgB_05270 [Paenibacillus elgii B69]
Length = 480
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 23/180 (12%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWA-ASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
QLGTLG+GNH+AEIQ ++ D A A K G+ D GQ+ VMIHSGSR +G V+ +
Sbjct: 197 QLGTLGSGNHFAEIQAIEIHEDNRAIAEKWGLRD-GQIVVMIHSGSRAWGGAVSQYGGSE 255
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
I K M+R T D +L A ++S+ + Y+ M +A N+A NR
Sbjct: 256 IG--------------KWMRRTGTGTADPRLIFAPLDSEAAEAYVHLMYSALNYAVTNRH 301
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ + R+AF + +M +YD+ HN A E H L VHRK + + P
Sbjct: 302 LIAYAIREAFR---DVCGSKFEMTTLYDLMHNYAWEETH----GGTPLFVHRKGATRALP 354
>gi|312792637|ref|YP_004025560.1| hypothetical protein Calkr_0396 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179777|gb|ADQ39947.1| protein of unknown function UPF0027 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 451
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 117/264 (44%), Gaps = 47/264 (17%)
Query: 3 DHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV 61
D IP GVG K I ++ EE L+ DK+ ++ + D +
Sbjct: 112 DLIPTGVGKKNKKIALSKAKYEEYLQNT-----------EIDKDISDKMVLIHEFDLDTI 160
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 121
A + G Q TLG GNH+ E Q + + DK A K G+ D GQ VMIHSGSR FG
Sbjct: 161 PDEAYEIGKEQFATLGGGNHFIEFQKL-HVIDKIIAEKWGLFD-GQFVVMIHSGSRRFGA 218
Query: 122 QVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAA 181
+ +K F D MK I T D QL I++K +DY+K+M +A
Sbjct: 219 VIGDYYQKK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQSA 264
Query: 182 ANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE-----EHMVDGKQK 236
A +A +NR M+ K +D ++YDV+HNIA E E +V K
Sbjct: 265 AIYAKINRHYMSNFIISVLEKH------SIDAWILYDVAHNIAYMERFANREKLVIRKGA 318
Query: 237 T--------LLVHRKVSEPSHPGV 252
T L+ + K ++ HP +
Sbjct: 319 TRALPPNHYLIPNPKFADTGHPVI 342
>gi|333372729|ref|ZP_08464653.1| RtcB protein [Desmospora sp. 8437]
gi|332971791|gb|EGK10739.1| RtcB protein [Desmospora sp. 8437]
Length = 482
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 97/199 (48%), Gaps = 27/199 (13%)
Query: 53 MLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVM 111
L P KV RA QLGTLG GNH+ E Q V+ K A G+ D GQ+ VM
Sbjct: 184 FLGEIPDKVWGRA----WGQLGTLGGGNHFIEFQRVEISEQKRDVAEAWGLFD-GQIVVM 238
Query: 112 IHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEG 171
IHSGSR +G + + ++AM++ + T D L A I+S EG
Sbjct: 239 IHSGSRAWGGMMGARYIK--------------DFKRAMQKWGVGTPDPNLVYAPIDSDEG 284
Query: 172 QDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 231
Y+ M +A NFA NR + + Q K+F +D +M V+YD+ HN A E H
Sbjct: 285 HRYINLMYSALNFAVANRHMIAYGVLQGL-KEF--AGNDAEMPVLYDLMHNYALKEVH-- 339
Query: 232 DGKQKTLLVHRKVSEPSHP 250
+ + +LVHRK + + P
Sbjct: 340 --RNQPMLVHRKGTTRALP 356
>gi|425304205|ref|ZP_18693991.1| putative PLP-dependent transferase [Escherichia coli N1]
gi|408231489|gb|EKI54757.1| putative PLP-dependent transferase [Escherichia coli N1]
Length = 465
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVIDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A I Q + ++YL++M
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPIGHKHPQSGLYGLAGGLAEEYLQAM 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R FA F+ D H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCFADLFHQD----DSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+H G
Sbjct: 353 -IHRKGATPAHAG 364
>gi|171915919|ref|ZP_02931389.1| hypothetical protein VspiD_32150 [Verrucomicrobium spinosum DSM
4136]
Length = 501
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 118/264 (44%), Gaps = 46/264 (17%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
H+ +G K + ++++ EAL + +W+ R ED H G + M
Sbjct: 144 HVNGDLGEKVVTQGASKEVCEALGIPPEWAAR-----CEDSAHVGHDGNVSTLIERLEKM 198
Query: 64 RAKKRGLP-------QLGTLGAGNHYAEIQIVD----EIYDKWAASKMGIEDVGQVCVMI 112
R + G P QLG+ G GNH+ E + V+ + AA G++D G V +
Sbjct: 199 R-RFNGYPNFDKKVEQLGSYGGGNHFGECERVELAEGSPEARRAAEAFGLKD-GHVAFLS 256
Query: 113 HSGSRGFGHQVATGKCEKITCM----AYVFPDALVQMEKAMKRDNIETNDRQLACARINS 168
H GSRGFGH +A+ + + + + FP DRQL A + S
Sbjct: 257 HCGSRGFGHDLASRQFKSLEAFFRQWSLPFP----------------AEDRQLVYAPLGS 300
Query: 169 KEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 228
E YL M+ ANFA VN + L +AF + T +L +Y +SHNIA+ E
Sbjct: 301 PEANAYLDDMSLGANFATVNHLLINSLVLEAFQEVLPGTQGEL----VYFISHNIAR--E 354
Query: 229 HMVDGKQKTLLVHRKVSEPSHPGV 252
+VDG+ VHRK + + P +
Sbjct: 355 ELVDGRNT--WVHRKGATRAFPAL 376
>gi|417305358|ref|ZP_12092329.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
gi|327538367|gb|EGF25040.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
Length = 510
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 89/185 (48%), Gaps = 28/185 (15%)
Query: 72 QLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E ++V D + A G+ D G V + H GSRGFGH +A+G+
Sbjct: 223 QLGSYGGGNHFGECEVVEVGDNDRAREVAQTFGLRD-GNVAFLSHCGSRGFGHNLASGQ- 280
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIE--TNDRQLACARINSKEGQDYLKSMAAAANFAW 186
++ R I DRQL A + S E DYL MA ANFA
Sbjct: 281 -------------FRTLQDKFDRWGIPLPAGDRQLVYAPLGSDEANDYLDDMALGANFAT 327
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE 246
VN + L +AF + T +L +Y +SHNIA+ E +VD + VHRK +
Sbjct: 328 VNHLLINALVLEAFQEVIPGTRGNL----VYFISHNIARKE--IVD--NQPAWVHRKGAT 379
Query: 247 PSHPG 251
+ PG
Sbjct: 380 RAMPG 384
>gi|440716071|ref|ZP_20896590.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
gi|436439017|gb|ELP32516.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
Length = 510
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 89/185 (48%), Gaps = 28/185 (15%)
Query: 72 QLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E ++V D + A G+ D G V + H GSRGFGH +A+G+
Sbjct: 223 QLGSYGGGNHFGECEVVEVGDNDRAREVAQTFGLRD-GNVAFLSHCGSRGFGHNLASGQ- 280
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIE--TNDRQLACARINSKEGQDYLKSMAAAANFAW 186
++ R I DRQL A + S E DYL MA ANFA
Sbjct: 281 -------------FRTLQDKFDRWGIPLPAGDRQLVYAPLGSDEANDYLDDMALGANFAT 327
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE 246
VN + L +AF + T +L +Y +SHNIA+ E +VD + VHRK +
Sbjct: 328 VNHLLINALVLEAFQEVIPGTRGNL----VYFISHNIARKE--IVD--NQPAWVHRKGAT 379
Query: 247 PSHPG 251
+ PG
Sbjct: 380 RAMPG 384
>gi|32475849|ref|NP_868843.1| hypothetical protein RB9360 [Rhodopirellula baltica SH 1]
gi|32446392|emb|CAD76220.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 510
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 31/255 (12%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLR--EGYIWAEDKEHCEEYGRMLNADPSKV 61
H+ +G + + + D+ AL + WS R + Y D R L+ S
Sbjct: 154 HVNRTLGKQLVTEGASDDVCHALGIPTSWSHRCEDSYHVGHDDTQLALENR-LDTILSHR 212
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
M + QLG+ G GNH+ E ++V D + A G+ D G V + H GSRG
Sbjct: 213 HMSNFSDKMQQLGSYGGGNHFGECEVVEVGDNDRAREVAQTFGLRD-GNVAFLSHCGSRG 271
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIE--TNDRQLACARINSKEGQDYLK 176
FGH +A+G+ ++ R I DRQL A + + E DYL
Sbjct: 272 FGHNLASGQ--------------FRTLQDKFDRWGIPLPAGDRQLVYAPLGTDEANDYLD 317
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
MA ANFA VN + L +AF + T +L +Y +SHNIA+ E +VD +
Sbjct: 318 DMALGANFATVNHLLINALVLEAFQEVIPGTRGNL----VYFISHNIARKE--IVD--NQ 369
Query: 237 TLLVHRKVSEPSHPG 251
VHRK + + PG
Sbjct: 370 PAWVHRKGATRAMPG 384
>gi|421612911|ref|ZP_16054005.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
gi|408496221|gb|EKK00786.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
Length = 510
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 113/255 (44%), Gaps = 31/255 (12%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLR--EGYIWAEDKEHCEEYGRMLNADPSKV 61
H+ +G + + + D+ AL + WS R + Y D R L+ S
Sbjct: 154 HVNRTLGKQLVTEGASDDVCRALGIPTSWSHRCEDSYHVGHDDTQLALENR-LDTILSHR 212
Query: 62 SMRAKKRGLPQLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
M + QLG+ G GNH+ E ++V D + A G+ D G V + H GSRG
Sbjct: 213 HMSNFSDKMQQLGSYGGGNHFGECEVVEVGDNDRAREVAQTFGLLD-GNVAFLSHCGSRG 271
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIE--TNDRQLACARINSKEGQDYLK 176
FGH +A+G+ ++ R I DRQL A + S E DYL
Sbjct: 272 FGHNLASGQ--------------FRTLQDKFDRWGIPLPAGDRQLVYAPLGSDEANDYLD 317
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
MA ANFA VN + L +AF + T +L +Y +SHNIA+ E +VD +
Sbjct: 318 DMALGANFATVNHLLINALVLEAFQEVIPGTRGNL----VYFISHNIARKE--IVD--NQ 369
Query: 237 TLLVHRKVSEPSHPG 251
VHRK + + PG
Sbjct: 370 PAWVHRKGATRAMPG 384
>gi|146296270|ref|YP_001180041.1| hypothetical protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409846|gb|ABP66850.1| protein of unknown function UPF0027 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 451
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 105/228 (46%), Gaps = 36/228 (15%)
Query: 3 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAE--DKEHCEEYGRMLNADPSK 60
D IP GVG K ++ + +S E Y+ DK+ ++ + D
Sbjct: 112 DLIPTGVGKKN------------KKISLPYSKYEEYLQNTEIDKDISDKMVLIHEFDLDT 159
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+ A + G Q TLG GNH+ E Q + I DK A + G+ + GQ+ VMIHSGSR FG
Sbjct: 160 IPDEAYEIGKEQFATLGGGNHFIEFQKLHVIDDK-VAKEWGLFE-GQLVVMIHSGSRRFG 217
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+ K F D MK I T D QL I++K +DY+K+M +
Sbjct: 218 AVIGDYYQRK-------FKDV-------MKSKGITTPDPQLTFLPIDNKVAKDYIKAMQS 263
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 228
AA +A VNR M+ + +D V+YDV+HNIA E+
Sbjct: 264 AAIYAKVNRHYMSNFIISVLDEH------GIDAWVLYDVAHNIAYMEK 305
>gi|432945872|ref|ZP_20141654.1| hypothetical protein A153_01398 [Escherichia coli KTE196]
gi|433042226|ref|ZP_20229751.1| hypothetical protein WIG_00764 [Escherichia coli KTE117]
gi|431462559|gb|ELH42770.1| hypothetical protein A153_01398 [Escherichia coli KTE196]
gi|431559575|gb|ELI33123.1| hypothetical protein WIG_00764 [Escherichia coli KTE117]
Length = 398
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 135 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 193
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL++M
Sbjct: 194 VGFYVGR-----------------RWMDRARAEWPAGHKHPQSGLYGLAGGLAEEYLQAM 236
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R FA F+ D H++ DV HNI E M
Sbjct: 237 GMAARYAWLNRVTIAEMVRVCFADLFHQD----DSHLVVDVPHNIILREHEMN------- 285
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+H G
Sbjct: 286 -IHRKGATPAHAG 297
>gi|378755851|gb|EHY65877.1| hypothetical protein NERG_01484 [Nematocida sp. 1 ERTm2]
Length = 532
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 49/242 (20%)
Query: 14 IIPMNAR-DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLP- 71
IIP++ D ++ L+ G+ + + G I E C E L K + K R
Sbjct: 157 IIPLSKEIDTDKILQNGVPYLIELG-IATEMDALCTESNGCLPVQNVKKLLDQKTRAAAR 215
Query: 72 -QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT---GK 127
QLGTLG GNHY E+Q+V +++DK +++G+ D+ VCV +H+GSR G T K
Sbjct: 216 KQLGTLGDGNHYIEVQVVGDVFDKEVCARLGL-DLDTVCVSVHTGSRSVGSTAVTRLLNK 274
Query: 128 CEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWV 187
C + Q + M+ +E IN + Y +++ A +NFA+
Sbjct: 275 CAE-------------QQDVYMQTGTVEI--------PINDPLAEKYFETVNACSNFAFC 313
Query: 188 NRSSMTFLCRQAF-----AKQFNT---------------TPDDLDMHVIYDVSHNIAKTE 227
NR + F A Q +T P + M VI D +HNI + E
Sbjct: 314 NRVVIGKEVEDVFREIIKANQPSTDDPNTAQTTCVPGIGLPQNFTMQVISDSAHNIVRLE 373
Query: 228 EH 229
E
Sbjct: 374 ER 375
>gi|253689917|ref|YP_003019107.1| hypothetical protein PC1_3555 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756495|gb|ACT14571.1| protein of unknown function UPF0027 [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 466
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 30/179 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V +K
Sbjct: 214 LGTVGSGNHFVELQIVDAVLDRHAAYQAGVQE-GEVVIMIHTGSRDVGFYVGQRGIDKAR 272
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+P EK D Q DY+++M AA +AW+NR +
Sbjct: 273 A---CWPAG----EKYPASGLFGLVDEQ----------ATDYMEAMGVAARYAWINRIVL 315
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
T L R ++ + F L + D+SHNI E M +HRK + P+ G
Sbjct: 316 TELIRSSWKQVFTRDTSKL----VVDLSHNIILPEHGMN--------LHRKGATPAKAG 362
>gi|227327976|ref|ZP_03832000.1| hypothetical protein PcarcW_11830 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 466
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+ E+QIVD + D+ AA + G+++ G+V VMIH+GSR G V +K
Sbjct: 214 LGTVGSGNHFVELQIVDAVLDRHAAYQAGVQE-GEVVVMIHTGSRDVGFYVGQRGIDK-- 270
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARIN--SKEGQDYLKSMAAAANFAWVNRS 190
R ++ A ++ DY+++M AA +AW+NR
Sbjct: 271 -----------------ARACWPAGEKYPASVLFGLVDEQATDYMEAMGVAARYAWINRI 313
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+T L R ++ + F L + D+SHNI E M +HRK + P+
Sbjct: 314 VLTELIRSSWKQVFTRDASKL----VVDLSHNIILPEHGMN--------LHRKGATPAKA 361
Query: 251 G 251
G
Sbjct: 362 G 362
>gi|289570802|ref|ZP_06451029.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544556|gb|EFD48204.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length = 229
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 126 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 185
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASK 99
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA++
Sbjct: 186 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAR 221
>gi|261822976|ref|YP_003261082.1| hypothetical protein Pecwa_3740 [Pectobacterium wasabiae WPP163]
gi|261606989|gb|ACX89475.1| protein of unknown function UPF0027 [Pectobacterium wasabiae
WPP163]
Length = 466
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V +K
Sbjct: 214 LGTVGSGNHFVELQIVDAVLDRHAAYQAGVKE-GEVVIMIHTGSRDVGFYVGQRGIDK-- 270
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQ--DYLKSMAAAANFAWVNRS 190
R ++ A +G DY+++M AA +AW+NR
Sbjct: 271 -----------------ARACWPAGEKYPASGLFGLVDGHAADYMEAMGVAARYAWINRI 313
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+T L R ++ + F L + D+SHNI E M +HRK + P+
Sbjct: 314 VLTELIRSSWKQVFTRDTSKL----VVDLSHNIILPEHGMN--------LHRKGATPAKA 361
Query: 251 G 251
G
Sbjct: 362 G 362
>gi|385873425|gb|AFI91945.1| RtcB protein [Pectobacterium sp. SCC3193]
Length = 466
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V +K
Sbjct: 214 LGTVGSGNHFVELQIVDAVLDRHAAYQAGVKE-GEVVIMIHTGSRDVGFYVGQRGIDK-- 270
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQ--DYLKSMAAAANFAWVNRS 190
R ++ A +G DY+++M AA +AW+NR
Sbjct: 271 -----------------ARACWPAGEKYPASGLFGLVDGHAADYMEAMGVAARYAWINRI 313
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+T L R ++ + F L + D+SHNI E M +HRK + P+
Sbjct: 314 VLTELIRSSWKQVFTRDTSKL----VVDLSHNIILPEHGMN--------LHRKGATPAKA 361
Query: 251 G 251
G
Sbjct: 362 G 362
>gi|290473553|ref|YP_003466423.1| PLP-dependent transferase [Xenorhabdus bovienii SS-2004]
gi|289172856|emb|CBJ79627.1| putative PLP-dependent transferase [Xenorhabdus bovienii SS-2004]
Length = 466
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 52/222 (23%)
Query: 49 EYGRM---LNADPSKVSMRAKKRGLPQ-------------LGTLGAGNHYAEIQIVDEIY 92
++ RM LNA S +++A R P+ LGT+G+GNH+ E+QIVD I
Sbjct: 174 DFKRMHTELNAILSTQAVQAHSRYAPEAFFEHREIIRPASLGTVGSGNHFVELQIVDTIL 233
Query: 93 DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV---FPDALVQMEKAM 149
D+ AA G+ + G+V +MIH+GSR G + +K + V +P +
Sbjct: 234 DRHAAYAAGLHE-GEVLMMIHTGSRDVGFYIGQRWVDKARALWPVTAKYPSS-------- 284
Query: 150 KRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPD 209
+ + Q+Y +M AA +AW NR +T L R A+ + F
Sbjct: 285 ------------GLFGLTDEHAQEYFLAMGCAARYAWANRIVLTELVRAAWKQIFGQDKS 332
Query: 210 DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L I D+SHNI E+ M +HRK + P+ G
Sbjct: 333 KL----IVDLSHNIIFPEQGMN--------LHRKGATPARAG 362
>gi|254433447|ref|ZP_05046955.1| hypothetical protein NOC27_378 [Nitrosococcus oceani AFC27]
gi|207089780|gb|EDZ67051.1| hypothetical protein NOC27_378 [Nitrosococcus oceani AFC27]
Length = 143
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 158 DRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIY 217
DR+L C +S E QDY +M A N ++ NR + + R+ F+K + DL M++IY
Sbjct: 30 DRELGCVLFHSPESQDYFAAMKCALNMSFANRKIILYRVREVFSKVSGQSARDLGMYMIY 89
Query: 218 DVSHNIAKTEEHMVDGKQKTLLVHRK 243
DV++N AK E + + GKQ+ LLVHRK
Sbjct: 90 DVANNTAKLESYQLSGKQRALLVHRK 115
>gi|227115463|ref|ZP_03829119.1| hypothetical protein PcarbP_21018 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 267
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 30/179 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+ E+QIVD + D+ AA + G+++ G+V VMIH+GSR G V +K
Sbjct: 15 LGTVGSGNHFVELQIVDAVLDRHAAYQAGVQE-GEVVVMIHTGSRDVGFYVGQRGIDKAR 73
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+P EK D Q +Y+++M AA +AW+NR +
Sbjct: 74 A---CWPAG----EKYPASGLFGLVDEQ----------ATEYMEAMGVAARYAWINRIVL 116
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
T L R ++ + F L + D+SHNI E M +HRK + P+ G
Sbjct: 117 TELIRSSWKQVFTHDASKL----VVDLSHNIILPEHGMN--------LHRKGATPAKAG 163
>gi|451984186|ref|ZP_21932443.1| hypothetical protein PA18A_1551 [Pseudomonas aeruginosa 18A]
gi|451758115|emb|CCQ84966.1| hypothetical protein PA18A_1551 [Pseudomonas aeruginosa 18A]
Length = 467
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 54/237 (22%)
Query: 33 SLREGYIWAE--------DKEHC---EEYGRMLNADPSKVSMRAKKRGL---PQLGTLGA 78
SL E +WAE + + C +E+G L P ++R ++R L P LGT G+
Sbjct: 165 SLSEDGLWAEVDQARLFRELQGCIGLDEFGGRLEYAPE--ALRDRRRSLIRDPGLGTTGS 222
Query: 79 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVF 138
GNH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V
Sbjct: 223 GNHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVG-------------- 267
Query: 139 PDALVQMEKAMKRDNIE-TNDRQLACARINSKEGQ---DYLKSMAAAANFAWVNRSSMTF 194
++ M R R+ + + + G+ +YL++M AA +AW+NR +
Sbjct: 268 -------QRWMDRARTAWPRGRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRVVLAE 320
Query: 195 LCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L R+ + F D ++ DV HN+ E+ L +HRK + P+ G
Sbjct: 321 LVRKVLRETFQRD----DSALLVDVPHNVVLQEQ--------GLNLHRKGATPARQG 365
>gi|334136072|ref|ZP_08509551.1| hypothetical protein HMPREF9413_4359 [Paenibacillus sp. HGF7]
gi|333606685|gb|EGL18020.1| hypothetical protein HMPREF9413_4359 [Paenibacillus sp. HGF7]
Length = 474
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 54 LNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIY--DKWAASKMGIEDVGQVCVM 111
LN P V R+ + QLGTLG GNH+AEIQ V EI ++ A G+ D GQV VM
Sbjct: 175 LNRLPENVWHRSHR----QLGTLGGGNHFAEIQSV-EIAEENRGTAEAWGLFD-GQVIVM 228
Query: 112 IHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEG 171
IHSGSR +G V+ C + +++ M+ + + T D L A ++
Sbjct: 229 IHSGSRAWGGSVSQ------LCGS--------DIKRMMRAEGMGTADPNLLFASLDHPLA 274
Query: 172 QDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMV 231
Y M +A N+A VNR + + R+A F + ++ +YD+ HN A E+
Sbjct: 275 VQYTDLMYSALNYAVVNRHLIAYAIREAGKDVFGS---KFELATLYDLMHNYAWEEDTED 331
Query: 232 DGKQKTLLVHRK 243
+G++ + VHRK
Sbjct: 332 EGRR--VFVHRK 341
>gi|387593281|gb|EIJ88305.1| hypothetical protein NEQG_01749 [Nematocida parisii ERTm3]
gi|387596007|gb|EIJ93629.1| hypothetical protein NEPG_01201 [Nematocida parisii ERTm1]
Length = 535
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 42/236 (17%)
Query: 21 DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLP-QLGTLGAG 79
D ++ LE G+ + + G D E G + ++ K+ +A + + QLGTLG G
Sbjct: 165 DADKILERGIPYLIELGMATELDAMCTESQGCLPVSNVKKLLGQAPRAAVKKQLGTLGNG 224
Query: 80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFP 139
NHY EIQ+V+EI+D ++G+E + VC+ +H+GSR G +
Sbjct: 225 NHYVEIQVVNEIFDDKICKQLGLE-LDMVCISVHTGSRSVGGGAVSD------------- 270
Query: 140 DALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQA 199
++K M+ ++ +D ++ IN ++Y + + A +NFA+ NR + +A
Sbjct: 271 ----LLKKCMRCESKYVHDEKVEIP-INDPMAENYFEMVNACSNFAFCNRVMIGREVEEA 325
Query: 200 FAKQFNTTPDD--------------------LDMHVIYDVSHNIAKTEEHMVDGKQ 235
+ F + D + M VI D +HNI + EE DGK+
Sbjct: 326 LKQTFEQSMGDTEETEVKDTRGVRNIKSGSSITMRVISDSAHNIVRLEER--DGKK 379
>gi|421082586|ref|ZP_15543469.1| Hypothetical protein Y17_3889 [Pectobacterium wasabiae CFBP 3304]
gi|401702823|gb|EJS93063.1| Hypothetical protein Y17_3889 [Pectobacterium wasabiae CFBP 3304]
Length = 466
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 30/179 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+ E+QIVD + D+ AA + G+++ G+V +MIH+GSR G V +K
Sbjct: 214 LGTVGSGNHFVELQIVDAVLDRHAAYQAGVKE-GEVVIMIHTGSRDVGFYVGQRGIDKAR 272
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+P EK D A DY+++M AA +AW+NR +
Sbjct: 273 A---CWPAG----EKYPASGLFGLVDAHAA----------DYMEAMGVAARYAWINRIVL 315
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
T L R ++ + F L + D+SHNI E M +HRK + P+ G
Sbjct: 316 TELIRSSWKQVFTRDTSKL----VVDLSHNIILPEHGMN--------LHRKGATPAKAG 362
>gi|418529672|ref|ZP_13095604.1| hypothetical protein CTATCC11996_08290 [Comamonas testosteroni ATCC
11996]
gi|371453192|gb|EHN66212.1| hypothetical protein CTATCC11996_08290 [Comamonas testosteroni ATCC
11996]
Length = 492
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LG+GNH+ E +V+E+YD+ AA G+ G V VMIH+GSR G V
Sbjct: 241 PSAADLGSGNHFLEFCVVEEVYDRHAAYAAGLRK-GDVTVMIHTGSRDVGFYVGRR---- 295
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
ME A ++ Q ++ QDYL++M AA +AW NR
Sbjct: 296 -------------WMELARQQWPQGIKHPQHGLYGLSGALAQDYLQAMGVAARYAWFNRM 342
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ L R+ A PD +I DV HN+ TE VHRK S P+H
Sbjct: 343 ALAELVRKELAG--IAAPD--ASRLIVDVPHNVVMTEGEFN--------VHRKGSTPAHE 390
Query: 251 G 251
G
Sbjct: 391 G 391
>gi|417305712|ref|ZP_12092661.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
gi|327537981|gb|EGF24676.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica WH47]
Length = 526
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 72 QLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E +IV ++ Y + + G+ D G V + H GSRGFGH +A +
Sbjct: 239 QLGSYGGGNHFGEAEIVSLSNKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQF 297
Query: 129 EKITC----MAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
+ FP D QL A +S EGQ YL MA ANF
Sbjct: 298 RAMKTHFQSSGLAFP----------------AGDPQLCYAEADSPEGQRYLCDMAMGANF 341
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A VN + L ++F + F +L IY +SHNIA+ E VDG+ + VHRK
Sbjct: 342 ATVNHLLINQLVLESFREVFPGIRGEL----IYFISHNIARQEP--VDGRLQ--WVHRK 392
>gi|440714895|ref|ZP_20895464.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
gi|436440267|gb|ELP33619.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SWK14]
Length = 528
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 72 QLGTLGAGNHYAEIQIVD---EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E +IV + Y + + G+ D G V + H GSRGFGH +A
Sbjct: 241 QLGSYGGGNHFGEAEIVSLSSKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDLAM--- 296
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ M F + + + D QL A +S EGQ YL MA ANFA VN
Sbjct: 297 SQFRAMKTHFQSSGL---------SFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVN 347
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ L ++F + F +L IY +SHNIA+ E VDG+ + VHRK
Sbjct: 348 HLLINQLVLESFREVFPGIRGEL----IYFISHNIARQEP--VDGRLQ--WVHRK 394
>gi|299530990|ref|ZP_07044403.1| hypothetical protein CTS44_09392 [Comamonas testosteroni S44]
gi|298720947|gb|EFI61891.1| hypothetical protein CTS44_09392 [Comamonas testosteroni S44]
Length = 492
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LG+GNH+ E +V+E+YD+ AA G++ G V VMIH+GSR G V
Sbjct: 241 PSAADLGSGNHFLEFCVVEEVYDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYVGRR---- 295
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
ME A ++ Q ++ QDYL++M AA +AW NR
Sbjct: 296 -------------WMELARQQWPQGIKHPQHGLYGLSGVLAQDYLQAMGVAARYAWFNRM 342
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ L R+ A PD +I DV HN+ TE VHRK S P+H
Sbjct: 343 ALAELVRKELAG--IAAPD--ASRLIVDVPHNVVMTEGEFN--------VHRKGSTPAHD 390
Query: 251 G 251
G
Sbjct: 391 G 391
>gi|421609581|ref|ZP_16050771.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
gi|408499677|gb|EKK04146.1| protein belonging to uncharacterized protein family UPF0027
[Rhodopirellula baltica SH28]
Length = 526
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 72 QLGTLGAGNHYAEIQIVD---EIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E +IV + Y + + G+ D G V + H GSRGFGH +A +
Sbjct: 239 QLGSYGGGNHFGEAEIVSLSSKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQF 297
Query: 129 EKITC----MAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
+ FP D QL A +S EGQ YL MA ANF
Sbjct: 298 RAMKAHFQSSGLAFP----------------AGDPQLCYAEADSPEGQRYLCDMAMGANF 341
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A VN + L ++F + F +L IY +SHNIA+ E VDG+ + VHRK
Sbjct: 342 ATVNHLLINQLVLESFREVFPGIRGEL----IYFISHNIARQEP--VDGRLQ--WVHRK 392
>gi|449135861|ref|ZP_21771290.1| protein belonging to Uncharacterized protein family UPF0027
[Rhodopirellula europaea 6C]
gi|448885476|gb|EMB15918.1| protein belonging to Uncharacterized protein family UPF0027
[Rhodopirellula europaea 6C]
Length = 507
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 24/175 (13%)
Query: 72 QLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E ++V ++ Y + + G+ D G V + H GSRGFGH +A +
Sbjct: 220 QLGSYGGGNHFGEAEVVSLSEKQYFRSIGEQWGLRD-GCVAFLSHCGSRGFGHDLAMSQF 278
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ A+ + L D QL A +S EGQ YL MA ANFA VN
Sbjct: 279 RAMK--AHFQSNGLA----------FPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVN 326
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ L ++F + F +L +Y +SHNIA+ E VDG+ + VHRK
Sbjct: 327 HMLINQLVLESFREVFPGIRGEL----VYFISHNIARQEP--VDGRLQ--WVHRK 373
>gi|420139570|ref|ZP_14647398.1| hypothetical protein PACIG1_2917 [Pseudomonas aeruginosa CIG1]
gi|421160167|ref|ZP_15619253.1| hypothetical protein PABE173_2853 [Pseudomonas aeruginosa ATCC
25324]
gi|403247661|gb|EJY61289.1| hypothetical protein PACIG1_2917 [Pseudomonas aeruginosa CIG1]
gi|404545187|gb|EKA54290.1| hypothetical protein PABE173_2853 [Pseudomonas aeruginosa ATCC
25324]
Length = 467
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 34 LREGYIWAE--------DKEHC---EEYGRMLNADPSKVSMRAKKRGL---PQLGTLGAG 79
L E +WAE + + C +E+G L P ++R ++R L P LGT G+G
Sbjct: 166 LSEDGLWAEVDQARLFRELQGCIGLDEFGGRLEYAPE--ALRDRRRSLIRDPGLGTTGSG 223
Query: 80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFP 139
NH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V
Sbjct: 224 NHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVG--------------- 267
Query: 140 DALVQMEKAMKRDNIE-TNDRQLACARINSKEGQ---DYLKSMAAAANFAWVNRSSMTFL 195
++ M R R+ + + + G+ +YL++M AA +AW+NR + L
Sbjct: 268 ------QRWMDRARTAWPRGRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRVVLAEL 321
Query: 196 CRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
R+ + F D ++ DV HN+ E+ L +HRK + P+ G
Sbjct: 322 VRKVLRETFQRD----DSALLVDVPHNVVLQEQ--------GLNLHRKGATPARQG 365
>gi|386058387|ref|YP_005974909.1| hypothetical protein PAM18_2324 [Pseudomonas aeruginosa M18]
gi|347304693|gb|AEO74807.1| hypothetical protein PAM18_2324 [Pseudomonas aeruginosa M18]
Length = 467
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 34 LREGYIWAE--------DKEHC---EEYGRMLNADPSKVSMRAKKRGL---PQLGTLGAG 79
L E +WAE + + C +E+G L P ++R ++R L P LGT G+G
Sbjct: 166 LSEDGLWAEVDQARLFRELQGCIGLDEFGGRLEYAPE--ALRDRRRSLIRDPGLGTTGSG 223
Query: 80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFP 139
NH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V
Sbjct: 224 NHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVG--------------- 267
Query: 140 DALVQMEKAMKRDNIE-TNDRQLACARINSKEGQ---DYLKSMAAAANFAWVNRSSMTFL 195
++ M R R+ + + + G+ +YL++M AA +AW+NR + L
Sbjct: 268 ------QRWMDRARTAWPRGRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRVVLAEL 321
Query: 196 CRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
R+ + F D ++ DV HN+ E+ L +HRK + P+ G
Sbjct: 322 VRKVLRETFQRD----DSALLVDVPHNVVLQEQ--------GLNLHRKGATPARQG 365
>gi|107102171|ref|ZP_01366089.1| hypothetical protein PaerPA_01003221 [Pseudomonas aeruginosa PACS2]
gi|218891188|ref|YP_002440054.1| hypothetical protein PLES_24541 [Pseudomonas aeruginosa LESB58]
gi|254235632|ref|ZP_04928955.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|392983679|ref|YP_006482266.1| hypothetical protein PADK2_11405 [Pseudomonas aeruginosa DK2]
gi|419753160|ref|ZP_14279564.1| hypothetical protein CF510_09217 [Pseudomonas aeruginosa
PADK2_CF510]
gi|126167563|gb|EAZ53074.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218771413|emb|CAW27180.1| COG1690: Uncharacterized conserved protein [Pseudomonas aeruginosa
LESB58]
gi|384400282|gb|EIE46641.1| hypothetical protein CF510_09217 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392319184|gb|AFM64564.1| hypothetical protein PADK2_11405 [Pseudomonas aeruginosa DK2]
Length = 467
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 54/236 (22%)
Query: 34 LREGYIWAE--------DKEHC---EEYGRMLNADPSKVSMRAKKRGL---PQLGTLGAG 79
L E +WAE + + C +E+G L P ++R ++R L P LGT G+G
Sbjct: 166 LSEDGLWAEVDQARLFRELQGCIGLDEFGGRLEYAPE--ALRDRRRSLIRDPGLGTTGSG 223
Query: 80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFP 139
NH+ E+Q+VD + D+ A +G+ ++ VMIHSGSR G V
Sbjct: 224 NHFVELQVVDRLLDRHQAFALGLR-ADELVVMIHSGSRDVGFHVG--------------- 267
Query: 140 DALVQMEKAMKRDNIE-TNDRQLACARINSKEGQ---DYLKSMAAAANFAWVNRSSMTFL 195
++ M R R+ + + + G+ +YL++M AA +AW+NR + L
Sbjct: 268 ------QRWMDRARTAWPRGRRHPASGLYALGGELAGEYLQAMGGAARYAWLNRVVLAEL 321
Query: 196 CRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
R+ + F D ++ DV HN+ E+ L +HRK + P+ G
Sbjct: 322 VRKVLRETFQRD----DSALLVDVPHNVVLQEQ--------GLNLHRKGATPARQG 365
>gi|283778155|ref|YP_003368910.1| hypothetical protein Psta_0360 [Pirellula staleyi DSM 6068]
gi|283436608|gb|ADB15050.1| protein of unknown function UPF0027 [Pirellula staleyi DSM 6068]
Length = 498
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 37/241 (15%)
Query: 13 GIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQ 72
GI P A E++ +G D + A+ E EE G + R + L Q
Sbjct: 165 GIPPEWAARCEDSHHVGHDGT---SVALAQRVEFHEEIG----------TFRDLRSKLQQ 211
Query: 73 LGTLGAGNHYAE---IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
+G+ G GNH+ E +QI + + A G+ D G V + H GSRG GH +A + +
Sbjct: 212 IGSYGGGNHFGECEVVQIENNARARSVADTFGLRD-GCVAFLSHCGSRGIGHNLAMHQFK 270
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
+ Q + A + NDR+L A + S EG Y+ M+ ANFA +N
Sbjct: 271 TL------------QSKFAKWDIPLPGNDRELVYAPLGSDEGNAYIDDMSLGANFATLNH 318
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
+ +AF + F DL +Y +SHNIA+ E +V+ ++ VHRK + +
Sbjct: 319 LVINLQVLEAFQQVFPGVKGDL----VYFISHNIAR--EEVVENRKA--WVHRKGATRAF 370
Query: 250 P 250
P
Sbjct: 371 P 371
>gi|422782496|ref|ZP_16835281.1| hypothetical protein ERFG_02736 [Escherichia coli TW10509]
gi|323976300|gb|EGB71390.1| hypothetical protein ERFG_02736 [Escherichia coli TW10509]
Length = 465
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGTLG+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTLGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|333912611|ref|YP_004486343.1| hypothetical protein DelCs14_0952 [Delftia sp. Cs1-4]
gi|333742811|gb|AEF87988.1| protein of unknown function UPF0027 [Delftia sp. Cs1-4]
Length = 472
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT+G+GNH+ E+Q+VDE+ D+ AA + G+ G V VMIHSGSR G V ++
Sbjct: 216 PCLGTVGSGNHFVELQVVDEVLDRHAAYRAGLR-AGDVVVMIHSGSRDLGFYVGQAWMDR 274
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+P + + ++ +YL++M AA +AW NR
Sbjct: 275 ARAE---WPQGVKHPASGLY--------------GLSGPLAGEYLQAMGVAARYAWANRV 317
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ L R K D ++ DV HN+ +Q + +HRK + P++
Sbjct: 318 VLAELVR----KDLEQIVGAADSRLVVDVPHNVVL--------QQGGMNIHRKGATPANE 365
Query: 251 G 251
G
Sbjct: 366 G 366
>gi|160901079|ref|YP_001566661.1| hypothetical protein Daci_5648 [Delftia acidovorans SPH-1]
gi|160366663|gb|ABX38276.1| protein of unknown function UPF0027 [Delftia acidovorans SPH-1]
Length = 472
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT+G+GNH+ E+Q+VDE+ D+ AA + G+ G V VMIHSGSR G V ++
Sbjct: 216 PCLGTVGSGNHFVELQVVDEVLDRHAAYRAGLR-AGDVVVMIHSGSRDLGFYVGQAWMDR 274
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+P + + ++ +YL++M AA +AW NR
Sbjct: 275 ARAE---WPQGVKHPASGLY--------------GLSGPLAGEYLQAMGVAARYAWANRV 317
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ L R K D ++ DV HN+ +Q + +HRK + P++
Sbjct: 318 VLAELVR----KDLEQIVGAADSRLVVDVPHNVVL--------QQGGMNIHRKGATPANE 365
Query: 251 G 251
G
Sbjct: 366 G 366
>gi|386623105|ref|YP_006142833.1| hypothetical protein CE10_0717 [Escherichia coli O7:K1 str. CE10]
gi|349736843|gb|AEQ11549.1| hypothetical protein CE10_0717 [Escherichia coli O7:K1 str. CE10]
Length = 465
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 214 PCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRR---- 268
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
M++A Q + ++YL++M AA +AW+NR
Sbjct: 269 -------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAMGMAARYAWLNRV 315
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ + R A F+ + H++ DV HNI E M +HRK + P+
Sbjct: 316 TIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN--------IHRKGATPARA 363
Query: 251 G 251
G
Sbjct: 364 G 364
>gi|422827921|ref|ZP_16876094.1| hypothetical protein ESNG_00599 [Escherichia coli B093]
gi|371615935|gb|EHO04312.1| hypothetical protein ESNG_00599 [Escherichia coli B093]
Length = 465
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 214 PCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRR---- 268
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
M++A Q + ++YL++M AA +AW+NR
Sbjct: 269 -------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAMGMAARYAWLNRV 315
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ + R A F+ + H++ DV HNI E M +HRK + P+
Sbjct: 316 TIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN--------IHRKGATPARA 363
Query: 251 G 251
G
Sbjct: 364 G 364
>gi|32473892|ref|NP_866886.1| hypothetical protein RB5774 [Rhodopirellula baltica SH 1]
gi|32444428|emb|CAD74427.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 528
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 72 QLGTLGAGNHYAEIQIV---DEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E +IV ++ Y + + G+ D G V + H GSRGFGH A +
Sbjct: 241 QLGSYGGGNHFGEAEIVSLSNKQYFRSLGEQWGLRD-GCVAFLSHCGSRGFGHDWAMSQF 299
Query: 129 EKITC----MAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
+ FP D QL A +S EGQ YL MA ANF
Sbjct: 300 RAMKTHFQSSGLAFP----------------AGDPQLCYAEADSPEGQRYLCDMAMGANF 343
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A VN + L ++F + F +L IY +SHNIA+ E VDG+ + VHRK
Sbjct: 344 ATVNHLLINQLVLESFREVFPGIRGEL----IYFISHNIARQEP--VDGRLQ--WVHRK 394
>gi|264678509|ref|YP_003278416.1| hypothetical protein CtCNB1_2374 [Comamonas testosteroni CNB-2]
gi|262209022|gb|ACY33120.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 492
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LG+GNH+ E +VDE+YD+ AA G++ G V VMIH+GSR G V
Sbjct: 241 PSAADLGSGNHFLEFCVVDEVYDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYVGR----- 294
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
M+ A ++ Q ++ QDYL++M AA + W NR
Sbjct: 295 ------------RWMDLARQQWPQGIKHPQHGLYGLSGALAQDYLQAMGVAARYGWFNRM 342
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ L R+ A + L I DV HN+ TE VHRK S P+H
Sbjct: 343 ALAELVRKELAGIAASDASRL----IVDVPHNVVMTEGEFN--------VHRKGSTPAHD 390
Query: 251 G 251
G
Sbjct: 391 G 391
>gi|218699084|ref|YP_002406713.1| hypothetical protein ECIAI39_0687 [Escherichia coli IAI39]
gi|218369070|emb|CAR16824.1| conserved hypothetical protein [Escherichia coli IAI39]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR G V
Sbjct: 214 PCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRDVGFYVGRR---- 268
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
M++A Q + ++YL++M AA +AW+NR
Sbjct: 269 -------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAMGMAARYAWLNRV 315
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ + R A F+ + H++ DV HNI E M +HRK + P+
Sbjct: 316 TIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREYEMN--------IHRKGATPARA 363
Query: 251 G 251
G
Sbjct: 364 G 364
>gi|432615560|ref|ZP_19851688.1| hypothetical protein A1UM_00991 [Escherichia coli KTE75]
gi|431156944|gb|ELE57605.1| hypothetical protein A1UM_00991 [Escherichia coli KTE75]
Length = 465
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+++A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALQATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRH-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|160938913|ref|ZP_02086264.1| hypothetical protein CLOBOL_03807 [Clostridium bolteae ATCC
BAA-613]
gi|158437876|gb|EDP15636.1| hypothetical protein CLOBOL_03807 [Clostridium bolteae ATCC
BAA-613]
Length = 513
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 17/177 (9%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+G++G GNH+ E+Q V EIYD A+ GI G + VMIHSGS GHQ +G+ +I
Sbjct: 208 QIGSIGGGNHFVEMQRVAEIYDGRTANAWGIRK-GSILVMIHSGSLTIGHQ--SGRINRI 264
Query: 132 TCMAYVFPDALVQMEKAM----KRDNIETNDRQ-LACARINSKEGQDYLKSMAAAANFAW 186
++P + + + +R+ +E N R+ + + Q + + AANF +
Sbjct: 265 ITKE-LYPKGVPHPDNGIYLLPEREKMEINSRENVPVSDKTDSPWQRFCSTTYNAANFGF 323
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
NR + + ++A + +M ++YD HN EE + + +HRK
Sbjct: 324 ANRLFLGLMLQRAVTDKVRP----YEMKLLYDSPHNFIWKEEM----EGRNYFIHRK 372
>gi|223935743|ref|ZP_03627659.1| cyclic nucleotide-binding protein [bacterium Ellin514]
gi|223895751|gb|EEF62196.1| cyclic nucleotide-binding protein [bacterium Ellin514]
Length = 503
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 28/184 (15%)
Query: 72 QLGTLGAGNHYAE---IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E +++VD + AA G++D V + H GSRG GH++A+G+
Sbjct: 213 QLGSYGGGNHFGECEVVELVDNQRARRAAEVFGMKD-NCVAFLSHCGSRGMGHRLASGQ- 270
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIET--NDRQLACARINSKEGQDYLKSMAAAANFAW 186
+++ +R I D++L A + + E DYL MA ANFA
Sbjct: 271 -------------FRTLQEKFERWGIALPGQDKELVYAPLGTAEANDYLDDMAMGANFAT 317
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE 246
VN + L +AF + L +Y +SHNIA+ E V+G++ VHRK +
Sbjct: 318 VNHLLINALVLEAFQEVIPGVKGQL----VYFISHNIARRER--VNGEEA--WVHRKGAT 369
Query: 247 PSHP 250
+ P
Sbjct: 370 RAFP 373
>gi|395003952|ref|ZP_10388044.1| hypothetical protein PMI14_00499 [Acidovorax sp. CF316]
gi|394318129|gb|EJE54596.1| hypothetical protein PMI14_00499 [Acidovorax sp. CF316]
Length = 467
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 38/185 (20%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT+G+GNH+ E+Q+V++I D+ AA G+ G V VMIHSGSR G V
Sbjct: 213 PCLGTVGSGNHFVELQVVEKILDRHAAYHAGLR-AGDVVVMIHSGSRDIGFYVG------ 265
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACAR----INSKEGQDYLKSMAAAANFAW 186
+ M R E Q A ++ ++YL++M AA +AW
Sbjct: 266 ---------------QAWMDRAKAEWPHGQRHPASGLYGLSGPLAEEYLQAMGVAARYAW 310
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE 246
NR + L R+ + + D ++ DV HN+ E K + +HRK +
Sbjct: 311 ANRVVLAELVRKDLEQLIGAS----DSRLVVDVPHNVVLQE--------KGMNIHRKGAT 358
Query: 247 PSHPG 251
P++ G
Sbjct: 359 PANEG 363
>gi|432717762|ref|ZP_19952760.1| hypothetical protein WCK_01393 [Escherichia coli KTE9]
gi|431266381|gb|ELF57942.1| hypothetical protein WCK_01393 [Escherichia coli KTE9]
Length = 465
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|295822075|gb|ADG36691.1| hypothetical protein [Danio rerio]
Length = 40
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 40 WAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGA 78
WAEDKEHCEEYGRML ADP+KVS +AKKRGLPQLGTLGA
Sbjct: 2 WAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGA 40
>gi|432390709|ref|ZP_19633568.1| hypothetical protein WE9_01027 [Escherichia coli KTE21]
gi|430921987|gb|ELC42808.1| hypothetical protein WE9_01027 [Escherichia coli KTE21]
Length = 465
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|416896226|ref|ZP_11926090.1| hypothetical protein ECSTEC7V_0868 [Escherichia coli STEC_7v]
gi|417118854|ref|ZP_11969372.1| hypothetical protein EC12741_4195 [Escherichia coli 1.2741]
gi|422800078|ref|ZP_16848576.1| hypothetical protein ERJG_01243 [Escherichia coli M863]
gi|323967436|gb|EGB62856.1| hypothetical protein ERJG_01243 [Escherichia coli M863]
gi|327254408|gb|EGE66030.1| hypothetical protein ECSTEC7V_0868 [Escherichia coli STEC_7v]
gi|386138388|gb|EIG79548.1| hypothetical protein EC12741_4195 [Escherichia coli 1.2741]
Length = 465
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|417289249|ref|ZP_12076534.1| hypothetical protein ECTW07793_0821 [Escherichia coli TW07793]
gi|425298891|ref|ZP_18688940.1| tRNA-splicing ligase RtcB [Escherichia coli 07798]
gi|386248041|gb|EII94214.1| hypothetical protein ECTW07793_0821 [Escherichia coli TW07793]
gi|408221307|gb|EKI45261.1| tRNA-splicing ligase RtcB [Escherichia coli 07798]
Length = 465
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|70730945|ref|YP_260686.1| hypothetical protein PFL_3584 [Pseudomonas protegens Pf-5]
gi|68345244|gb|AAY92850.1| conserved hypothetical protein [Pseudomonas protegens Pf-5]
Length = 477
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 29/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LG+LG GNH+ EIQ+V E+ D+ A G+ VGQV +MIH+GSR G V +K
Sbjct: 221 PGLGSLGGGNHFVEIQVVTELVDRQACFAQGL-SVGQVVMMIHTGSRDVGFYVGRRWMDK 279
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
KA+ I+ D ++ + + +YL +M +AA++A NR+
Sbjct: 280 ---------------AKALWPAGIKHPDSKIFA--LFGEMADEYLLAMHSAAHYADANRA 322
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ + RQ + F ++ +I DV HNI EE G VHRK + P++
Sbjct: 323 LIAEMVRQRTRQVFGA---GIEAPLIVDVPHNIVLREE---GGN-----VHRKGATPAYA 371
Query: 251 G 251
G
Sbjct: 372 G 372
>gi|312965163|ref|ZP_07779400.1| uncharacterized family UPF0027 family protein [Escherichia coli
2362-75]
gi|417754485|ref|ZP_12402580.1| hypothetical protein ECDEC2B_0795 [Escherichia coli DEC2B]
gi|418995734|ref|ZP_13543347.1| hypothetical protein ECDEC1A_0727 [Escherichia coli DEC1A]
gi|419000875|ref|ZP_13548434.1| hypothetical protein ECDEC1B_0779 [Escherichia coli DEC1B]
gi|419006389|ref|ZP_13553845.1| hypothetical protein ECDEC1C_0690 [Escherichia coli DEC1C]
gi|419012252|ref|ZP_13559617.1| tRNA-splicing ligase RtcB [Escherichia coli DEC1D]
gi|419017159|ref|ZP_13564485.1| hypothetical protein ECDEC1E_0857 [Escherichia coli DEC1E]
gi|419022849|ref|ZP_13570091.1| tRNA-splicing ligase RtcB [Escherichia coli DEC2A]
gi|419027659|ref|ZP_13574858.1| hypothetical protein ECDEC2C_0703 [Escherichia coli DEC2C]
gi|419033162|ref|ZP_13580260.1| hypothetical protein ECDEC2D_0815 [Escherichia coli DEC2D]
gi|419038438|ref|ZP_13585497.1| hypothetical protein ECDEC2E_0749 [Escherichia coli DEC2E]
gi|312290254|gb|EFR18137.1| uncharacterized family UPF0027 family protein [Escherichia coli
2362-75]
gi|377848612|gb|EHU13594.1| hypothetical protein ECDEC1A_0727 [Escherichia coli DEC1A]
gi|377851190|gb|EHU16145.1| hypothetical protein ECDEC1C_0690 [Escherichia coli DEC1C]
gi|377853522|gb|EHU18421.1| hypothetical protein ECDEC1B_0779 [Escherichia coli DEC1B]
gi|377863017|gb|EHU27824.1| tRNA-splicing ligase RtcB [Escherichia coli DEC1D]
gi|377867133|gb|EHU31897.1| hypothetical protein ECDEC1E_0857 [Escherichia coli DEC1E]
gi|377868487|gb|EHU33231.1| tRNA-splicing ligase RtcB [Escherichia coli DEC2A]
gi|377879431|gb|EHU44004.1| hypothetical protein ECDEC2B_0795 [Escherichia coli DEC2B]
gi|377883581|gb|EHU48099.1| hypothetical protein ECDEC2D_0815 [Escherichia coli DEC2D]
gi|377885542|gb|EHU50037.1| hypothetical protein ECDEC2C_0703 [Escherichia coli DEC2C]
gi|377898039|gb|EHU62402.1| hypothetical protein ECDEC2E_0749 [Escherichia coli DEC2E]
Length = 465
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V M++A Q + ++YL+++
Sbjct: 261 VGFYVGRR-----------------WMDRARAEWPTGHKHPQSGLYGLAGGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|221066896|ref|ZP_03543001.1| protein of unknown function UPF0027 [Comamonas testosteroni KF-1]
gi|220711919|gb|EED67287.1| protein of unknown function UPF0027 [Comamonas testosteroni KF-1]
Length = 492
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LG+GNH+ E +VDEI+D+ AA G++ G V VMIH+GSR G V
Sbjct: 241 PSAADLGSGNHFLEFCVVDEIFDRHAAYAAGLKK-GDVTVMIHTGSRDVGFYVGR----- 294
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
M+ A ++ + ++ QDYL++M AA +AW NR
Sbjct: 295 ------------RWMDLARQQWPQGIKHPRHGLYGLSGALAQDYLQAMGVAARYAWFNRM 342
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++ L R+ + PD +I DV HN+ TE VHRK S P+H
Sbjct: 343 ALAELVRKEL--EDIAAPD--ASRLIVDVPHNVVMTEGEFN--------VHRKGSTPAHD 390
Query: 251 G 251
G
Sbjct: 391 G 391
>gi|196233202|ref|ZP_03132048.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
gi|196222673|gb|EDY17197.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
Length = 504
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 72 QLGTLGAGNHYAE---IQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E ++I D + AA G+ D G + + H GSRGFGH +A+G+
Sbjct: 214 QLGSYGGGNHFGECEAVEIGDNDRARKAAETFGLRD-GGLAFLSHCGSRGFGHNLASGQF 272
Query: 129 EKITCM--AYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAW 186
+ + P + D++L A + + E YL MA ANFA
Sbjct: 273 RALQRFFETWGLP--------------LPGQDKELVYAPLGTPEADAYLDDMALGANFAT 318
Query: 187 VNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE 246
VN + L +AF + L +Y +SHNIA+ E +VD ++ VHRK +
Sbjct: 319 VNHLLINALVLEAFQEIIPGATGRL----VYFISHNIARRE--IVDNREA--WVHRKGAT 370
Query: 247 PSHP 250
+ P
Sbjct: 371 RAFP 374
>gi|383453793|ref|YP_005367782.1| hypothetical protein COCOR_01779 [Corallococcus coralloides DSM
2259]
gi|380728282|gb|AFE04284.1| hypothetical protein COCOR_01779 [Corallococcus coralloides DSM
2259]
Length = 474
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 51 GRMLNADPSKVSMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 107
G L DP+ ++ G+ P L T+G GNH+ E+Q V+ + D+ A G+ + GQ
Sbjct: 194 GGALEGDPAWAPTGLRREGVVRDPGLATIGGGNHFVEVQRVEAVVDRARAWAWGVRE-GQ 252
Query: 108 VCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARIN 167
+ M+HSGSR G V E+ +P + +
Sbjct: 253 LAFMVHSGSRDMGKHVGRTWQERARA---AWPSGAPHPASGI-------------FPLAD 296
Query: 168 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNI 223
+ ++YLK+ A AAN+A++NR + L RQ + F D++ ++YDV HNI
Sbjct: 297 PAKVREYLKAEATAANYAFLNRLLLAELVRQTLRELFG----DVEAPLVYDVPHNI 348
>gi|78061773|ref|YP_371681.1| hypothetical protein Bcep18194_B0923 [Burkholderia sp. 383]
gi|77969658|gb|ABB11037.1| protein of unknown function UPF0027 [Burkholderia sp. 383]
Length = 463
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT G+GNH+ E+Q+VD ++D+ AA + G+ V VMIHSGSR G V ++
Sbjct: 212 PCLGTPGSGNHFVELQVVDAVFDRHAAYRAGLAK-DDVVVMIHSGSRDVGFYVGRRWMDR 270
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+P + E + ++ + ++YL +M AA +AW+NR
Sbjct: 271 ARA---AWPAGVRHPESGLY--------------GLSGELAREYLVAMGTAARYAWLNRV 313
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ + R+ A+ T L + DV HN+ E M +HRK + P+
Sbjct: 314 VLAEMVRKELAELTGETRSAL----VVDVPHNVVLRENGMN--------IHRKGATPARD 361
Query: 251 G 251
G
Sbjct: 362 G 362
>gi|416337774|ref|ZP_11674088.1| Protein RtcB [Escherichia coli WV_060327]
gi|320194110|gb|EFW68742.1| Protein RtcB [Escherichia coli WV_060327]
Length = 465
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 33/193 (17%)
Query: 62 SMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
++ A R L P LGT G+GNH+ E+Q+VD + D+ A + G++ G + VMIHSGSR
Sbjct: 202 ALLATDRALLRDPCLGTPGSGNHFIELQVVDSVVDRHVAWQQGLK-TGDIVVMIHSGSRD 260
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G V ++ + E + ++ LA ++YL+++
Sbjct: 261 VGFYVGRRWMDR------------TRAEWPTGHKHPQSGLYGLA-----GGLAEEYLQAI 303
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AA +AW+NR ++ + R A F+ + H++ DV HNI E M
Sbjct: 304 GMAARYAWLNRVTIAEMVRVCLANLFHQD----NSHLVVDVPHNIILREHEMN------- 352
Query: 239 LVHRKVSEPSHPG 251
+HRK + P+ G
Sbjct: 353 -IHRKGATPARVG 364
>gi|196231795|ref|ZP_03130652.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
gi|196224267|gb|EDY18780.1| protein of unknown function UPF0027 [Chthoniobacter flavus
Ellin428]
Length = 467
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 33/197 (16%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
S V+ R + + QLGT G+GNH+ E D A GIE V ++ HSGSRG
Sbjct: 193 SPVTQRLRDKAWSQLGTSGSGNHFVEFGAFTA--DAAQAEAFGIEPGEHVALLSHSGSRG 250
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKR-DNIETNDRQLACARINSKEGQDYLKS 177
G QV C+ V ++AM R +++ + LA ++ +GQ+Y +
Sbjct: 251 TGAQV----CD-------------VYSKRAMARHEHLPKELKHLAWLSLDDADGQEYWAA 293
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQ 235
M +A N + L + AK+ L I D+ HN A E H+V+G++
Sbjct: 294 MNLMGRYAAANHA----LIHKHIAKK-------LGADAILDIENHHNFAWKERHVVNGEE 342
Query: 236 KTLLVHRKVSEPSHPGV 252
+ ++VHRK + P+ GV
Sbjct: 343 REVIVHRKGATPAGAGV 359
>gi|34496880|ref|NP_901095.1| hypothetical protein CV_1425 [Chromobacterium violaceum ATCC 12472]
gi|34102735|gb|AAQ59100.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 477
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
P LGT GAGNH+ E+Q+VD++ D+ AA G+ V MIH+GSR G V K
Sbjct: 226 PSLGTQGAGNHFVELQVVDQVLDRHAAYAAGLAK-DDVVFMIHTGSRDVGFYVGKRWMNK 284
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+P + E + ++ +YL +M AA +AW NR
Sbjct: 285 ARA---AWPRQMKYPEHGL--------------FGLSGALADEYLIAMGTAARYAWANRM 327
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
++T + R A + + ++ DV HN+ +++ L +HRK + P+
Sbjct: 328 ALTEMVRSAIEATLGQS----NSRLVVDVPHNVVL--------REQGLNIHRKGATPARE 375
Query: 251 G 251
G
Sbjct: 376 G 376
>gi|271966907|ref|YP_003341103.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270510082|gb|ACZ88360.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 511
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
+G++G GNH+AE+Q V I+D+ AA G +GQV +M+HSGS GHQ ++
Sbjct: 224 IGSVGGGNHFAELQYVSAIHDRQAAHGWGFS-LGQVVLMVHSGSLSLGHQANASGLDQAR 282
Query: 133 C---MAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
PD R D + A AR + YL + AANFA NR
Sbjct: 283 AAWPAGVPLPD---------NRIIPMMTDGRSAPAR------RRYLDAFGNAANFAVGNR 327
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
++ + R A + DL +YD HN+ + DG+ +VHRK + P+
Sbjct: 328 FFLSLMLRAGLAAECGELAADL----VYDAPHNLLWQHD---DGQ----VVHRKGATPA 375
>gi|407002074|gb|EKE18928.1| protein of unknown function UPF0027, partial [uncultured bacterium]
Length = 417
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 72 QLGTLGA-GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG-HQVATGKCE 129
+LG +GA GNH+ ++ V EI D A K+GI+ GQ MIH+GS G + + T +
Sbjct: 113 RLGIIGAAGNHFLDLMKVGEIADPLMAEKLGIKK-GQYLFMIHTGSGILGQYTMYTHTAK 171
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIE-----------TNDRQLACARINSKEGQDYLKSM 178
K ++ AL ++ K+ ++ T D L N +G+ Y+ +
Sbjct: 172 KAEHLSQALMVALGRLTFRSKKKDVYKKMQEKISLHMTKDDSLLKYDANGDDGEMYMNAR 231
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAA+NF NR+ +T +A K F P M +IYD+ H EEH K +
Sbjct: 232 AAASNFGTANRAVITHNISEAIKKLFGKDP---QMDLIYDLPHISITKEEHF----GKNV 284
Query: 239 LVHR 242
+VHR
Sbjct: 285 IVHR 288
>gi|162450226|ref|YP_001612593.1| hypothetical protein sce1954 [Sorangium cellulosum So ce56]
gi|161160808|emb|CAN92113.1| hypothetical protein sce1954 [Sorangium cellulosum So ce56]
Length = 520
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
+ S RA R + Q+GT+G GNH+ EIQ VDE+ D A G+ V +M H+GS G
Sbjct: 219 QASGRADGRDI-QIGTVGGGNHFVEIQAVDELVDGATARSFGLSK-NAVTIMAHAGSVGL 276
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GH V E+ + +P + L ++ E YL +M
Sbjct: 277 GHAVGGYFNERARAL---YPAGVPHPAHGFY---------VLPAVGPHAHEASVYLDAMR 324
Query: 180 AAANFAWVNRSSMTFLC----RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 235
AANFA+ NR + + R+ + +T ++YD HN+ DG +
Sbjct: 325 NAANFAFANRLFLGLMVVRAMREVLGRHVTST-------LVYDAPHNLIWEP----DGAE 373
Query: 236 KTLLVHRKVSEPS 248
L HRK + P+
Sbjct: 374 PRYL-HRKGATPA 385
>gi|383818167|ref|ZP_09973465.1| hypothetical protein MPHLEI_02753 [Mycobacterium phlei RIVM601174]
gi|383339412|gb|EID17748.1| hypothetical protein MPHLEI_02753 [Mycobacterium phlei RIVM601174]
Length = 394
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLG+LG GNH+ E + ++D GQV + +HSGSRG G+++AT E
Sbjct: 147 QLGSLGGGNHFIE---------------LCVDDDGQVWMFLHSGSRGVGNKIATHHIE-- 189
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
++ +RD +E +R LA + E Y+ + FA NR
Sbjct: 190 ------------VAKRLCRRDGVELPNRDLAYLTEGTAEFDRYIADLGWTQQFALANREE 237
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
M RQA A+ PD ++ I + HN TE H + V RK + +H G
Sbjct: 238 MMDRFRQALARWMRADPDGVETERI-NTHHNYTATERH----GGTDVWVTRKGAVAAHAG 292
>gi|406873102|gb|EKD23357.1| hypothetical protein ACD_82C00097G0001 [uncultured bacterium]
Length = 216
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 158 DRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIY 217
DRQL CA S+EGQDY +MAAAANFAW NR +++ R+A+ K D ++ +Y
Sbjct: 3 DRQLVCAPFKSQEGQDYFGAMAAAANFAWANRHTISHWTREAWQKILGP---DAYLNTLY 59
Query: 218 DVSHNIAKTEEHMVDGKQKTLLVHRK 243
DVSHN+ K E+H VDG +K LL+HRK
Sbjct: 60 DVSHNLGKIEKHKVDGIEKELLLHRK 85
>gi|83647734|ref|YP_436169.1| hypothetical protein HCH_05061 [Hahella chejuensis KCTC 2396]
gi|83635777|gb|ABC31744.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length = 402
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 78/183 (42%), Gaps = 40/183 (21%)
Query: 52 RMLNADP--SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVC 109
R+L P SK+ RA++ + QLGTLG GNH+ E+ VD+ D W
Sbjct: 136 RLLEQHPKLSKMLPRAQQTWVRQLGTLGGGNHFIEV-CVDQSQDVW-------------- 180
Query: 110 VMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSK 169
VM+HSGSRG G+ + E+ K M R DR LA S
Sbjct: 181 VMLHSGSRGIGNVIGRYFIER--------------ARKDMSRHIANLPDRDLAYFEEGSP 226
Query: 170 EGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKT 226
DYL ++ A +A VNR M T Q F F TT + ++ H HN +
Sbjct: 227 HFADYLDAVDWAQEYARVNREEMLGLTLRAMQPFLPPFTTTCEAINCH------HNYVQK 280
Query: 227 EEH 229
E H
Sbjct: 281 ERH 283
>gi|357018552|ref|ZP_09080822.1| hypothetical protein KEK_01100 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356481706|gb|EHI14804.1| hypothetical protein KEK_01100 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 347
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 34/197 (17%)
Query: 56 ADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 115
A S V + + QLG+LG GNH+ E+ I D+ V + +HSG
Sbjct: 84 ATESGVDLSHSPKWREQLGSLGGGNHFIELCIDDDEV---------------VWLFLHSG 128
Query: 116 SRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYL 175
SRG GH++A + ++ ++ I+ + LA + E Y+
Sbjct: 129 SRGVGHKIARRH--------------IAAAKRQCEQHGIDLPNPDLAYLTEGTPEFDRYI 174
Query: 176 KSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ 235
+ A FA NR M RQ+FA+ PDD+++ I + HN E+H GKQ
Sbjct: 175 TELNWAQQFALANREEMMDRFRQSFARWMRVDPDDVEVQRI-NTHHNYTVQEQHA--GKQ 231
Query: 236 KTLLVHRKVSEPSHPGV 252
+ V RK + +HPGV
Sbjct: 232 --VWVTRKGAINAHPGV 246
>gi|436836770|ref|YP_007321986.1| protein of unknown function UPF0027 [Fibrella aestuarina BUZ 2]
gi|384068183|emb|CCH01393.1| protein of unknown function UPF0027 [Fibrella aestuarina BUZ 2]
Length = 512
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSR 117
+KV K + QLG+ G GNH+ E IVD D+ AA+ + + + ++ HSGSR
Sbjct: 237 TKVIRDLKDKAYRQLGSSGTGNHFVEWGIVDVYADETGAAAGLNLPPGSYLALLSHSGSR 296
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
GFG VA + AM++ + LA +N++EGQ+Y +
Sbjct: 297 GFGGNVAN-----------------YYSKLAMQKTKLPKEAAHLAWLDLNTEEGQEYWIA 339
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
M A +A N + + AK P V+ + HN A +E + DG++
Sbjct: 340 MNLAGEYASANHHEI----HRKLAKALRQKP-----LVMVENHHNFA-WKEQLADGRE-- 387
Query: 238 LLVHRKVSEPSHPGV 252
++VHRK + P+ P V
Sbjct: 388 VIVHRKGATPAGPDV 402
>gi|288871478|ref|ZP_06410190.1| putative RtcB protein, partial [Clostridium hathewayi DSM 13479]
gi|288863323|gb|EFC95621.1| putative RtcB protein [Clostridium hathewayi DSM 13479]
Length = 571
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 37/211 (17%)
Query: 36 EGYIWAEDKEHCEEY---GRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIY 92
+G +WAE+ E E++ L D Q+G++G GNH+ E+Q V EIY
Sbjct: 254 KGSLWAEETEGLEDFIGDAHTLTYDD-------------QIGSIGGGNHFVEMQRVAEIY 300
Query: 93 DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRD 152
D A+ GI+ G + +MIH+GS GHQ +G+ ++ ++P + + +
Sbjct: 301 DGQTANAWGIKR-GAILLMIHTGSLMIGHQ--SGRISQMITRG-LYPKLIPHPDNGIY-- 354
Query: 153 NIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLD 212
L +E + + + AANF + NR + + + A + + +
Sbjct: 355 -------LLPEGEGEGREWRRFRSTTGNAANFGFANRMFLGLMLQNAVENRVHP----FE 403
Query: 213 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M ++YD HN +E +G++ +HRK
Sbjct: 404 MKLLYDSPHNFIWEKES--EGRKS--YIHRK 430
>gi|124003948|ref|ZP_01688795.1| protein RtcB [Microscilla marina ATCC 23134]
gi|123990527|gb|EAY30007.1| protein RtcB [Microscilla marina ATCC 23134]
Length = 499
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 32/191 (16%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+KV K++ + Q+G+ G GNH+ E +D + D S++G+ + ++ HSGSRG
Sbjct: 213 TKVIRDLKRKAIQQIGSSGTGNHFVEWGTIDILEDN---SELGLPKGQYLALLSHSGSRG 269
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FG +A G I AM++ + + R LA +N++EGQ+Y M
Sbjct: 270 FGANIA-GHYTNI----------------AMEKTKLPKHARHLAWLDLNTQEGQEYWIGM 312
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A +A N + + A+ T P L M + HN A + + DG + +
Sbjct: 313 NLAGEYASANHHQI----HKRMAQSLETQP--LKM---IENHHNFA-WRDQLADGTE--V 360
Query: 239 LVHRKVSEPSH 249
+VHRK + P+H
Sbjct: 361 IVHRKGATPAH 371
>gi|422593608|ref|ZP_16667900.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330983917|gb|EGH82020.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 407
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 39/170 (22%)
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A K+ QLGTLG+GNH+ E+ +DE D W +M+HSGSRG G+ +
Sbjct: 154 AMKKAGTQLGTLGSGNHFIEL-CIDENQDVW--------------IMLHSGSRGIGNMIG 198
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
+ + + +K M R I+ DR LA ++E +DY+++++ A +
Sbjct: 199 S--------------HFIKEAQKLMDRWYIDLPDRNLAYLPEGAQEFEDYVEALSWAQEY 244
Query: 185 AWVNRSSM----TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
A+ NR M R+ K+F T + ++ H HN A E H
Sbjct: 245 AFKNRELMMEKVILALRRTIDKEFTITQEAINCH------HNYATRENHF 288
>gi|68001458|ref|XP_669913.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56484627|emb|CAI03914.1| hypothetical protein PB301434.00.0 [Plasmodium berghei]
Length = 194
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHC 47
+F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W ED +C
Sbjct: 148 LFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDXLNC 194
>gi|94263171|ref|ZP_01286989.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
gi|94265106|ref|ZP_01288872.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
gi|93454436|gb|EAT04731.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
gi|93456542|gb|EAT06656.1| Protein of unknown function UPF0027 [delta proteobacterium MLMS-1]
Length = 391
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 36/172 (20%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGTLG GNH+ EIQ + G + +M+HSGSR G +VA
Sbjct: 144 QLGTLGGGNHFIEIQRGSD---------------GHIWLMVHSGSRNLGFKVAN------ 182
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
F +Q+ + K + N QLA ++S G+DYL +M +FA+ NR
Sbjct: 183 -----YFNRLAIQLNREQK-SKVPAN-WQLAYLPVDSPVGRDYLLAMQYCVDFAYANRDL 235
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M R+ + + + +++HN A EEH + ++VHRK
Sbjct: 236 MLARIRETLQEVLGP----VTFAPMINIAHNYAALEEHY----GQKVIVHRK 279
>gi|444917738|ref|ZP_21237826.1| Protein RtcB [Cystobacter fuscus DSM 2262]
gi|444710687|gb|ELW51662.1| Protein RtcB [Cystobacter fuscus DSM 2262]
Length = 474
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 25/185 (13%)
Query: 43 DKEHCEEY-GRMLNADPSKVSMRAKKRGL---PQLGTLGAGNHYAEIQIVDEIYDKWAAS 98
D+E Y G L DP+ ++ G+ P L ++G GNH+ E+Q V+ + D+ A
Sbjct: 185 DRESTRVYLGGALEGDPAWAPTGLRREGVVRDPGLASIGGGNHFVEVQRVEAVVDRARAW 244
Query: 99 KMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETND 158
+ G+ + GQ+ M+HSGSR G V E+ +P E + + D
Sbjct: 245 RWGVRE-GQLAFMVHSGSRDLGKHVGHTWQERARA---AWPVGAPLPESGI----LPLAD 296
Query: 159 RQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYD 218
L ++YL++ A AAN+A++NR + L R + F D++ ++YD
Sbjct: 297 PALV---------REYLRAEATAANYAFLNRLLLAELLRLTLRELFG----DVEAPLVYD 343
Query: 219 VSHNI 223
V HNI
Sbjct: 344 VPHNI 348
>gi|429086737|ref|ZP_19149469.1| Protein with similarity to RtcB [Cronobacter universalis NCTC 9529]
gi|426506540|emb|CCK14581.1| Protein with similarity to RtcB [Cronobacter universalis NCTC 9529]
Length = 379
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQQIDSVYDDEAIAALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D +E SKE +YL A +FA NR+
Sbjct: 188 ------------------HDGLEA----------GSKEAGEYLAQHQQALDFAVANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 218 -LIARRLLAHIKETG------EPVLDVNHNL--LAPYTLGDTQGWL--HRKGATPADLG 265
>gi|337738586|ref|YP_004638033.1| hypothetical protein SMB_G3419 [Clostridium acetobutylicum DSM
1731]
gi|384460097|ref|YP_005672517.1| hypothetical protein CEA_G3385 [Clostridium acetobutylicum EA 2018]
gi|325510786|gb|ADZ22422.1| hypothetical protein CEA_G3385 [Clostridium acetobutylicum EA 2018]
gi|336291677|gb|AEI32811.1| hypothetical protein SMB_G3419 [Clostridium acetobutylicum DSM
1731]
Length = 410
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q GTLG GNH+ E+Q +++G++C+MIHSGSR FG QV C
Sbjct: 154 GYFQAGTLGGGNHFIELQE---------------DELGKLCIMIHSGSRNFGKQV----C 194
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ +A E K + + +LA ++ +G+ Y+ M A +FA+ N
Sbjct: 195 DYFNNIA---------RELNEKWKSSVPQEFRLAFLPTDTDKGKRYINWMNLALDFAYEN 245
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRKVSE 246
R+ M + K N DL++ +++ HN A+ E H K + VHRK +
Sbjct: 246 RAKMMDNVKSIIEKWLNKYT-DLNIEYTEEINCHHNYARLENHY----GKNVWVHRKGAT 300
Query: 247 PSHPG 251
+ G
Sbjct: 301 SAREG 305
>gi|442318643|ref|YP_007358664.1| hypothetical protein MYSTI_01648 [Myxococcus stipitatus DSM 14675]
gi|441486285|gb|AGC42980.1| hypothetical protein MYSTI_01648 [Myxococcus stipitatus DSM 14675]
Length = 474
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 27/159 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG---KCE 129
L T+G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGSR G V +
Sbjct: 219 LATIGGGNHFVEVQRVEAVEDRARAWAWGVRE-GQLAFMIHSGSRDVGKHVGVAWKDRAR 277
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
K FPD+ + + D L YL++ A AAN+A++NR
Sbjct: 278 KAWPQGAPFPDSGI----------LPLADETLV---------SQYLEAEATAANYAFLNR 318
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 228
+ L RQ + F D++ ++YDV HNI E
Sbjct: 319 LLLAELLRQTLRELFG----DVEAPLVYDVPHNITLPHE 353
>gi|429082976|ref|ZP_19146029.1| Protein with similarity to RtcB [Cronobacter condimenti 1330]
gi|426548230|emb|CCJ72070.1| Protein with similarity to RtcB [Cronobacter condimenti 1330]
Length = 379
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A + + I Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQHIDHVYDDEAVNALNIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D +E S+ DYL A +FA NR+
Sbjct: 188 ------------------HDGLEA----------GSEAADDYLAQHQQALDFAIANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L + + T + + DV+HN+ E + KQ L HRK + P+H G
Sbjct: 218 --LIARRLLEHIKVTGEP-----VLDVNHNL--LEPYTWGEKQGWL--HRKGATPAHCG 265
>gi|405372168|ref|ZP_11027432.1| Protein RtcB [Chondromyces apiculatus DSM 436]
gi|397088541|gb|EJJ19522.1| Protein RtcB [Myxococcus sp. (contaminant ex DSM 436)]
Length = 474
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG---KCE 129
L T+G GNH+ E+Q V+ + D+ A + G+ + GQ+ MIHSGSR G V +
Sbjct: 219 LATIGGGNHFVEVQRVEAVEDRGRAWRWGVRE-GQLAFMIHSGSRDVGKHVGVAWQERAR 277
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
K PD+ + LA R+ S +YL++ A AAN+A++NR
Sbjct: 278 KAWPQGTPLPDSGIL---------------PLADERLVS----EYLEAEATAANYAFLNR 318
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 228
+ L RQ + F D++ ++YDV HN+ E
Sbjct: 319 LLLAELLRQTLRELFG----DVEAPLVYDVPHNLTLPHE 353
>gi|429109050|ref|ZP_19170820.1| Protein with similarity to RtcB [Cronobacter malonaticus 507]
gi|426310207|emb|CCJ96933.1| Protein with similarity to RtcB [Cronobacter malonaticus 507]
Length = 379
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQQIDSVYDDDAIAALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D +E SKE +YL A +FA NR+
Sbjct: 188 ------------------HDGLEA----------GSKEAGEYLAQHQQALDFAVANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 218 -LIARRLLAHIKETG------EPVLDVNHNL--LAPYTLGDTQGWL--HRKGATPADLG 265
>gi|403344686|gb|EJY71692.1| Release factor H-coupled RctB family protein [Oxytricha trifallax]
Length = 597
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 45/203 (22%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+ +K+ L LGT+G GNH+AE Q + +I D+ +A ++G+ D +V +++HSGSR G +
Sbjct: 279 KLEKKHLQTLGTIGGGNHFAEFQEIVQIIDQESADRIGL-DSNEVYMLVHSGSRSLGETI 337
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
YV M+K +N +I+S E Q+YL+S A N
Sbjct: 338 ------------YV-----QYMDKTKHLEN--------KGCKIDSVECQEYLQSHDLALN 372
Query: 184 FAWVNRSSMTF-LCRQAFAKQFNTTPDDL-------DMHV-----IYDVSHNIAKTEEHM 230
FA NR + + +Q +++ N D D+ V I D+ HN E+
Sbjct: 373 FARRNRMLIAHRILKQIDSRKQNERSQDQKDNIQFPDLAVSSSDCIIDIHHNFV--EQQF 430
Query: 231 VDGK----QKTLLVHRKVSEPSH 249
+ + +K + VHRK + PS+
Sbjct: 431 IQDEESKLEKQVWVHRKGATPSN 453
>gi|429105784|ref|ZP_19167653.1| Protein with similarity to RtcB [Cronobacter malonaticus 681]
gi|426292507|emb|CCJ93766.1| Protein with similarity to RtcB [Cronobacter malonaticus 681]
Length = 379
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A + +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQQIDSVYDDDAIAALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D +E S+E +YL A +FA NR+
Sbjct: 188 ------------------HDGLEA----------GSEEASEYLAQHQQALDFAVANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 218 -LIARRLLAHIKETG------EPVLDVNHNL--LAPYTLGDTQGWL--HRKGATPADLG 265
>gi|355674268|ref|ZP_09059532.1| hypothetical protein HMPREF9469_02569 [Clostridium citroniae
WAL-17108]
gi|354814069|gb|EHE98671.1| hypothetical protein HMPREF9469_02569 [Clostridium citroniae
WAL-17108]
Length = 411
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 35/177 (19%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q DE G +CVMIHSGSR G V
Sbjct: 155 GFYQIGTLGGGNHFIELQADDE---------------GYLCVMIHSGSRHIGKSV----- 194
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
C + F ++ + D ++ +LA +++ EG+ YL M + +FA N
Sbjct: 195 ----CDYFHFKAR--ELNRRWYSD--VPDEYRLAFLPVDTGEGRQYLNWMQLSMDFAKEN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRK 243
R M + K DL++ +D++ HN A E H K + VHRK
Sbjct: 247 REKMMLATKSVLEKYIGKYT-DLELKFSHDINCHHNYAALEHHY----DKDVWVHRK 298
>gi|226315420|ref|YP_002775316.1| hypothetical protein BBR47_58350 [Brevibacillus brevis NBRC 100599]
gi|226098370|dbj|BAH46812.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 491
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+G+LG GNH+ EIQ+V +++ AS+ G+++ GQV +MIH+GS G+ E +
Sbjct: 200 QIGSLGGGNHFFEIQVVKKVHQGSIASQWGLKE-GQVVLMIHTGSVSIGYHSGAWIKEML 258
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
M +P +L + M + ++R L ++ + + AANFA+ NR
Sbjct: 259 KKM---YPTSLKHPDNGMYP--LPLSERSLPQWKM-------FWSLLHNAANFAFANRLM 306
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS 245
+ + ++ + D + ++YD HN E+ +Q +HRK S
Sbjct: 307 LGLMMYKSISDVLG----DFEHRLLYDAPHNYLWEEQL----EQVGGFLHRKGS 352
>gi|398814819|ref|ZP_10573497.1| hypothetical protein PMI05_01917 [Brevibacillus sp. BC25]
gi|398035907|gb|EJL29133.1| hypothetical protein PMI05_01917 [Brevibacillus sp. BC25]
Length = 491
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+G+LG GNH+ EIQ+V +++ AS+ G+++ GQV +MIH+GS G+ E +
Sbjct: 200 QIGSLGGGNHFFEIQVVKKVHQGSIASQWGLKE-GQVVLMIHTGSVSIGYNSGAWIKEML 258
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
M +P +L + M + ++R L ++ + + AANFA+ NR
Sbjct: 259 KKM---YPTSLKHPDNGMYP--LPLSERSLPQWKM-------FWSLLHNAANFAFANRLM 306
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS 245
+ + ++ + D + ++YD HN E+ +Q +HRK S
Sbjct: 307 LGLMMYKSISDVLG----DFEHRLLYDAPHNYLWEEQL----EQVGGFLHRKGS 352
>gi|452994383|emb|CCQ94045.1| conserved hypothetical protein [Clostridium ultunense Esp]
Length = 380
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 37/189 (19%)
Query: 55 NADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHS 114
N SKV + + QLGTLG GNH+ ++ + G + +M+HS
Sbjct: 120 NPPNSKVVLEELEAARYQLGTLGGGNHFMTMEQGSD---------------GHIWLMVHS 164
Query: 115 GSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDY 174
GSR FG+++A + ++ KA K + + + LA I+SKEGQ+Y
Sbjct: 165 GSRNFGYKIAN-----------YYNKIANEINKATK---LSPSKQDLAGLYIDSKEGQEY 210
Query: 175 LKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGK 234
+M A FA NR + + F F D + + HN A E H
Sbjct: 211 FVAMNYALEFAKENREQLL----EQFYTIFREETDSHKILQKIGIHHNYAAIETHF---- 262
Query: 235 QKTLLVHRK 243
++ ++VHRK
Sbjct: 263 REEVIVHRK 271
>gi|355677841|ref|ZP_09060608.1| release factor H-coupled RctB family protein [Clostridium citroniae
WAL-17108]
gi|354812927|gb|EHE97541.1| release factor H-coupled RctB family protein [Clostridium citroniae
WAL-17108]
Length = 357
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 125
GT+G GNH+AE Q +D++YD+ AA K+G+ D G+V ++IHSGSRG+G + +
Sbjct: 117 FGTIGTGNHFAEFQCLDQVYDETAAGKLGLMD-GKVLLLIHSGSRGYGQDILS 168
>gi|449138195|ref|ZP_21773487.1| protein belonging to Uncharacterized protein family UPF0027,
partial [Rhodopirellula europaea 6C]
gi|448883187|gb|EMB13728.1| protein belonging to Uncharacterized protein family UPF0027,
partial [Rhodopirellula europaea 6C]
Length = 304
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 20/118 (16%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWA---ASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
QLG+ G GNH+ E ++V+ D A A G+ D G V + H GSRGFGH +A+G+
Sbjct: 202 QLGSYGGGNHFGECEVVEVGDDDRARDVAQTFGLID-GNVAFLSHCGSRGFGHNLASGQ- 259
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIE--TNDRQLACARINSKEGQDYLKSMAAAANF 184
++ R I DRQL A + S E DYL MA ANF
Sbjct: 260 -------------FRTLQDKFDRWGIPLPAGDRQLVYAPLGSDEANDYLDDMALGANF 304
>gi|389842111|ref|YP_006344195.1| release factor H-coupled RctB family protein [Cronobacter sakazakii
ES15]
gi|387852587|gb|AFK00685.1| putative release factor H-coupled RctB family protein [Cronobacter
sakazakii ES15]
Length = 379
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D +E S+E +YL A +FA NR+
Sbjct: 188 ------------------HDGLEA----------GSEEASEYLAQHQQALDFAVANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 218 -LIARRLLAHIKETG------ERVLDVNHNL--LAPYTLGDTQGWL--HRKGATPADLG 265
>gi|115377163|ref|ZP_01464376.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|310819288|ref|YP_003951646.1| hypothetical protein STAUR_2015 [Stigmatella aurantiaca DW4/3-1]
gi|115365806|gb|EAU64828.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|309392360|gb|ADO69819.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 474
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 27/154 (17%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG---KCE 129
L T+G GNH+ E+Q V+ I D+ A + G+ + GQ+ MIHSGSR G V +
Sbjct: 219 LATIGGGNHFVEVQRVESIRDRTRAWEWGVRE-GQLAFMIHSGSRDMGKHVGGAWQDRAR 277
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
FPD+ + + ++ L +YL++ A AAN+A++NR
Sbjct: 278 AAWPAGKPFPDSGI----------LPLSEPALVA---------EYLRAEATAANYAFLNR 318
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNI 223
+ L R + F D++ +IYDV HNI
Sbjct: 319 LLLAELLRHTLRELFG----DVEAPLIYDVPHNI 348
>gi|161702960|ref|YP_369101.2| hypothetical protein Bcep18194_A4862 [Burkholderia sp. 383]
Length = 382
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 44/181 (24%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
LGT+G+GNH+AE Q +D +YD A + +G+ D ++ +++HSGSRGFG +
Sbjct: 128 SLGTIGSGNHFAEAQRIDAVYDTDAVAALGL-DPDRLLLLVHSGSRGFGQSI-------- 178
Query: 132 TCMAYVFPDALVQMEKAMKRDNIE-TNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+E+ M+ +D AC YL AA +A NR
Sbjct: 179 -------------LEQHMREHGYNGLDDTDAAC--------TAYLARHDAALRYAIANRD 217
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ R+ A+ D + DV+HN+ VDG+ L HRK + P+
Sbjct: 218 ---LIARRMLARWRT------DGRCVLDVNHNL--VSRATVDGEPGWL--HRKGATPADA 264
Query: 251 G 251
G
Sbjct: 265 G 265
>gi|121534773|ref|ZP_01666593.1| protein of unknown function UPF0027 [Thermosinus carboxydivorans
Nor1]
gi|121306568|gb|EAX47490.1| protein of unknown function UPF0027 [Thermosinus carboxydivorans
Nor1]
Length = 382
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 37/172 (21%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGTLG GNH EIQ D+ G + +M+HSGSR G +VA
Sbjct: 139 QLGTLGGGNHVIEIQKGDD---------------GFIWLMLHSGSRNLGKKVAD------ 177
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
F V++ K + + + D LA N++EGQ+Y+++M FA+ NRS
Sbjct: 178 -----YFNKKAVELNKKWRAEVPKEWD--LAFLPANTEEGQNYIEAMNFCLAFAYANRSK 230
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M + F TP + DV HN A E+H + + VHRK
Sbjct: 231 MMDRFIEIFYDITGHTPVEQ-----IDVHHNYAALEKHY----GEKVWVHRK 273
>gi|77967077|gb|ABB08457.1| protein of unknown function UPF0027 [Burkholderia sp. 383]
Length = 402
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 44/181 (24%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
LGT+G+GNH+AE Q +D +YD A + +G+ D ++ +++HSGSRGFG +
Sbjct: 148 SLGTIGSGNHFAEAQRIDAVYDTDAVAALGL-DPDRLLLLVHSGSRGFGQSI-------- 198
Query: 132 TCMAYVFPDALVQMEKAMKRDNIE-TNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+E+ M+ +D AC YL AA +A NR
Sbjct: 199 -------------LEQHMREHGYNGLDDTDAAC--------TAYLARHDAALRYAIANRD 237
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ R+ A+ D + DV+HN+ VDG+ L HRK + P+
Sbjct: 238 ---LIARRMLARWRT------DGRCVLDVNHNL--VSRATVDGEPGWL--HRKGATPADA 284
Query: 251 G 251
G
Sbjct: 285 G 285
>gi|407986007|ref|ZP_11166574.1| RNA-splicing ligase RtcB [Mycobacterium hassiacum DSM 44199]
gi|407372402|gb|EKF21451.1| RNA-splicing ligase RtcB [Mycobacterium hassiacum DSM 44199]
Length = 385
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 107/264 (40%), Gaps = 51/264 (19%)
Query: 5 IPVGVGSK-GIIPMNARDLEEALEM-GMDWSLREGYIWAEDKEHCEEYGRMLNADP---- 58
IP VG G ++AR + A ++ G D SL + A Y R LN P
Sbjct: 54 IPAAVGVDIGCGMISARTVFTAGDIAGKDLSLLRKSLEAAIPLSAGNYNRSLNRYPFTME 113
Query: 59 --SKVSMRAKKRGL---------PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 107
++ A +RG+ QLG+LG GNH+ E + ++D Q
Sbjct: 114 RLRRLERLAAERGVDLSHSPRWKEQLGSLGGGNHFIE---------------LCVDDDDQ 158
Query: 108 VCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARIN 167
V + +HSGSRG GH++AT + ++ +R ++ + LA
Sbjct: 159 VWMFLHSGSRGVGHKIATHH--------------IGVAKRVCQRAEVDLPNPDLAYLTEG 204
Query: 168 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
S E Y+ + A FA NR M RQA A+ D +++ I + HN E
Sbjct: 205 SAEFDRYIADLGWAQQFALANREEMMDRFRQALARWMRANADTVEVERI-NTHHNYTTPE 263
Query: 228 EHMVDGKQKTLLVHRKVSEPSHPG 251
+H + V RK + +H G
Sbjct: 264 QH----HGTDVWVTRKGAVAAHTG 283
>gi|284036411|ref|YP_003386341.1| hypothetical protein Slin_1492 [Spirosoma linguale DSM 74]
gi|283815704|gb|ADB37542.1| protein of unknown function UPF0027 [Spirosoma linguale DSM 74]
Length = 512
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 32/196 (16%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIE-DVGQVCVMI-HSGS 116
+KV K + QLGT G GNH+ E IV E+++ + G+ G+ ++ HSGS
Sbjct: 237 TKVIRDLKDKAYRQLGTSGTGNHFVEWGIV-EVHEDSVTKESGLNLPPGEYLALLSHSGS 295
Query: 117 RGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLK 176
RGFG +A + AM++ + LA +N++EGQ+Y
Sbjct: 296 RGFGANIAN-----------------TYSKLAMQKTRLPREAAHLAWLDLNTQEGQEYWI 338
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
M A +A N + AK P V+ + HN A +E + DG++
Sbjct: 339 GMNLAGEYASANHHEI----HHKLAKALREKP-----LVMVENHHNFA-WKEQLADGRE- 387
Query: 237 TLLVHRKVSEPSHPGV 252
+LVHRK + P+ GV
Sbjct: 388 -VLVHRKGATPAGTGV 402
>gi|239623938|ref|ZP_04666969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521969|gb|EEQ61835.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 357
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 25/148 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV--------- 123
GT+GAGNH+AE Q +D++YD A K+G+ D G++ ++IHSGSRG+G ++
Sbjct: 117 FGTIGAGNHFAEFQCLDQVYDGDRAEKLGLMD-GKIFLLIHSGSRGYGQEILSRFYSPDG 175
Query: 124 ---ATGK-----CEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARIN----SKEG 171
T K E + + + L K + N+++ +L + N ++EG
Sbjct: 176 LKEGTSKADAYLAEHDNALLWAGRNRLAAAVKLLDYLNVDSRTERLTDSCHNYVEQTREG 235
Query: 172 QDYLKSMAAAANFAWV---NRSSMTFLC 196
+ K +A + A V +R S+T++C
Sbjct: 236 WLHRKGSVSAGHHALVIPGSRGSLTYVC 263
>gi|325282400|ref|YP_004254941.1| hypothetical protein Deipr_0150 [Deinococcus proteolyticus MRP]
gi|324314209|gb|ADY25324.1| protein of unknown function UPF0027 [Deinococcus proteolyticus MRP]
Length = 467
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GT G+GNH+ E + K A ++G+E + V+ HSGSRGFG QVA G K+
Sbjct: 215 QIGTSGSGNHFVEFGEL-----KVAGGELGLEAGEYLAVLSHSGSRGFGAQVA-GHFTKL 268
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
E KR ++ R+LA ++++EGQ Y ++M A +A N
Sbjct: 269 A-------------ESRHKR--LDPAARRLAWLGLDTEEGQAYWQAMNLAGRYALANHDQ 313
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ +A ++ + SHN+A ++ V+G++ L+VHRK + P+ G
Sbjct: 314 IHARLSRALGERPLAQVSN---------SHNLAWKQQ--VNGQE--LIVHRKGATPAEAG 360
>gi|282890195|ref|ZP_06298725.1| hypothetical protein pah_c014o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174283|ref|YP_004651093.1| protein rtcB [Parachlamydia acanthamoebae UV-7]
gi|281499852|gb|EFB42141.1| hypothetical protein pah_c014o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478641|emb|CCB85239.1| protein rtcB [Parachlamydia acanthamoebae UV-7]
Length = 454
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 30/191 (15%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
+K++ ++ G+ Q+GT G GNH+ E E+ + + +G++ V ++ HSGSRG
Sbjct: 187 TKLTRGLRQTGIRQIGTSGGGNHFVEW---GELEIGSSENPLGLQVGKYVALLSHSGSRG 243
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
G ++A + A+ QM +E + R LA ++S+ G +Y +M
Sbjct: 244 VGAKIADHYTKW----------AMEQM------PTLEQSVRHLAWLPLDSEAGLEYWDAM 287
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
A FA N + Q ++ TP ++ H HN A E ++DG +K
Sbjct: 288 QLAGKFASANH----HVIHQRISQALGLTPLTSVENH------HNFAWKESVIIDGIEKE 337
Query: 238 LLVHRKVSEPS 248
+VHRK + P+
Sbjct: 338 WIVHRKGATPA 348
>gi|429100254|ref|ZP_19162228.1| Protein with similarity to RtcB [Cronobacter turicensis 564]
gi|426286903|emb|CCJ88341.1| Protein with similarity to RtcB [Cronobacter turicensis 564]
Length = 379
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D ++ S+E +YL A +FA NR+
Sbjct: 188 ------------------HDGLDA----------GSEEASEYLAQHQQALDFAVANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 218 -LIARRLLAHIKETG------EPVLDVNHNL--LAPYTLGDTQGWL--HRKGATPASLG 265
>gi|331655001|ref|ZP_08356000.1| protein RtcB [Escherichia coli M718]
gi|331047016|gb|EGI19094.1| protein RtcB [Escherichia coli M718]
Length = 408
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 86/203 (42%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
+ R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 K----LPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKMVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|260596639|ref|YP_003209210.1| hypothetical protein CTU_08470 [Cronobacter turicensis z3032]
gi|260215816|emb|CBA28275.1| hypothetical protein CTU_08470 [Cronobacter turicensis z3032]
Length = 388
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 138 LGSVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 196
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D ++ S+E +YL A +FA NR+
Sbjct: 197 ------------------HDGLDA----------GSEEASEYLAQHQLALDFAVANRA-- 226
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 227 -LIARRLLAHIKETG------EPVLDVNHNL--LAPYTLGDTQGWL--HRKGATPASLG 274
>gi|297569020|ref|YP_003690364.1| protein of unknown function UPF0027 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924935|gb|ADH85745.1| protein of unknown function UPF0027 [Desulfurivibrio alkaliphilus
AHT2]
Length = 392
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 43/181 (23%)
Query: 67 KRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG 126
+ L QLGTLG GNH+ EIQ + G + +M+HSGSR G +VA
Sbjct: 139 RNALYQLGTLGGGNHFIEIQRGSD---------------GHIWLMVHSGSRNLGFKVAN- 182
Query: 127 KCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAW 186
F +++ + + + TN QLA +S G+ YL +M +FA+
Sbjct: 183 ----------YFNRLAIKLNRE-QNSKVPTN-WQLAYLTADSPAGRSYLLAMQYCVDFAY 230
Query: 187 VNRSSMTF----LCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
NR M R+ Q P + +++HN A EEH + ++VHR
Sbjct: 231 ANRDLMLTRIKETIREILGPQVTFAP-------MINIAHNYAALEEHY----GQKVIVHR 279
Query: 243 K 243
K
Sbjct: 280 K 280
>gi|432865463|ref|ZP_20088560.1| protein rtcB [Escherichia coli KTE146]
gi|431402209|gb|ELG85522.1| protein rtcB [Escherichia coli KTE146]
Length = 408
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|421776610|ref|ZP_16213213.1| hypothetical protein ECAD30_27220 [Escherichia coli AD30]
gi|408458298|gb|EKJ82086.1| hypothetical protein ECAD30_27220 [Escherichia coli AD30]
Length = 408
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432877483|ref|ZP_20095203.1| protein rtcB [Escherichia coli KTE154]
gi|431418185|gb|ELH00599.1| protein rtcB [Escherichia coli KTE154]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|293416823|ref|ZP_06659460.1| rtcB protein [Escherichia coli B185]
gi|291431399|gb|EFF04384.1| rtcB protein [Escherichia coli B185]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|424798130|ref|ZP_18223672.1| Protein with similarity to RtcB [Cronobacter sakazakii 696]
gi|423233851|emb|CCK05542.1| Protein with similarity to RtcB [Cronobacter sakazakii 696]
Length = 379
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 42/179 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q +D +YD A +GI Q+ ++ HSGSRGFG Q+ E+ +
Sbjct: 129 LGSVGGGNHFAELQQIDSVYDDDAIEALGIRPA-QLLLLAHSGSRGFGQQILRAHVERFS 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
D ++ S+E +YL A +FA NR+
Sbjct: 188 ------------------HDGLDA----------GSEEASEYLAQHQQALDFAVANRA-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A T + DV+HN+ + + Q L HRK + P+ G
Sbjct: 218 -LIARRLLAHIKETG------ERVLDVNHNL--LAPYTLGDTQGWL--HRKGATPADLG 265
>gi|427707543|ref|YP_007049920.1| hypothetical protein Nos7107_2150 [Nostoc sp. PCC 7107]
gi|427360048|gb|AFY42770.1| protein of unknown function UPF0027 [Nostoc sp. PCC 7107]
Length = 479
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 26/179 (14%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
L T+G+GNH+ E+Q V+ I ++ A GI + GQ+ MIHSGSR G + ++
Sbjct: 221 LATIGSGNHFVEVQQVERIENRSLAYAWGIRE-GQLTFMIHSGSRNVGKYIGGMWRDRTK 279
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+P++L E + ++ ++ +A YLK+ AAN+ ++NR +
Sbjct: 280 A---TWPESLKYPESQIFPLSVHSHPELVA----------SYLKAEGTAANYGFINRLLL 326
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L R + + D++ ++YD+ HNI E V RK + P++PG
Sbjct: 327 AELLRLRLRQVYG----DVEAPLVYDLPHNITLPEGQG--------WVTRKGACPAYPG 373
>gi|384246800|gb|EIE20289.1| UPF0027-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 435
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 43/203 (21%)
Query: 58 PSKV---SMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHS 114
PSK SM A K L QLGTLG GNH+ E+ +YD + G+V +M+HS
Sbjct: 165 PSKFVEESMSAPKV-LKQLGTLGGGNHFLEV-----VYD----------ETGRVWIMLHS 208
Query: 115 GSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDY 174
GSR G+ IT Y D + + + +++ I T L I+S+EGQ Y
Sbjct: 209 GSRNIGN---------ITATHY---DKMAK--EGLQQRGI-TTPHNLNYLEIDSEEGQQY 253
Query: 175 LKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE-HMVDG 233
L+ M +AW NRS M L + T + + ++ HN + E + D
Sbjct: 254 LQDMLWCQEYAWHNRSFMRDLMIDIVE---DVTKGSVSLDESVNIHHNFCQCERCNYTDP 310
Query: 234 KQKT-----LLVHRKVSEPSHPG 251
+ L + RK + P+ PG
Sbjct: 311 RSGAKISADLYITRKGATPAAPG 333
>gi|423127545|ref|ZP_17115224.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5250]
gi|376394584|gb|EHT07234.1| release factor H-coupled RctB family protein [Klebsiella oxytoca
10-5250]
Length = 379
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 44/181 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE+Q VD + D+ + G+ D + +++HSGSRG G + IT
Sbjct: 129 LGSIGGGNHFAELQQVDRVIDRQRLQQAGL-DAQHLLLLVHSGSRGLGQSILQ---RHIT 184
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
++ D L + +S QDYL A FA VNR +
Sbjct: 185 AFSH---DGLAE----------------------DSAAAQDYLAEHQDALAFARVNRQLI 219
Query: 193 -TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
T + +Q A N + DV+HN E V+G+Q L HRK + P G
Sbjct: 220 ATRILQQVRADGQN----------VLDVAHNF--VEARSVNGRQGWL--HRKGATPDDRG 265
Query: 252 V 252
+
Sbjct: 266 L 266
>gi|239624209|ref|ZP_04667240.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520595|gb|EEQ60461.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 33/176 (18%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q +E G +CVMIHSGSR G V C
Sbjct: 152 GFYQIGTLGGGNHFIELQEDNE---------------GYLCVMIHSGSRHIGKSV----C 192
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ F + ++ + D ++ +LA +S EG+ YL M + +FA N
Sbjct: 193 D-------YFHNKARELNRRWHSD--VPDEYRLAFLPTDSHEGKQYLNWMQLSMDFAREN 243
Query: 189 RSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
R M + K D +L+ + HN A E H K + VHRK
Sbjct: 244 REKMMLAVKAVLEKYIGKYTDFNLEFSGDINCHHNYAALEHHY----DKDVWVHRK 295
>gi|432817166|ref|ZP_20050926.1| protein rtcB [Escherichia coli KTE115]
gi|431361569|gb|ELG48150.1| protein rtcB [Escherichia coli KTE115]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432545136|ref|ZP_19781970.1| protein rtcB [Escherichia coli KTE236]
gi|432550618|ref|ZP_19787377.1| protein rtcB [Escherichia coli KTE237]
gi|432623760|ref|ZP_19859777.1| protein rtcB [Escherichia coli KTE76]
gi|431071963|gb|ELD79720.1| protein rtcB [Escherichia coli KTE236]
gi|431077520|gb|ELD84771.1| protein rtcB [Escherichia coli KTE237]
gi|431156688|gb|ELE57355.1| protein rtcB [Escherichia coli KTE76]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432604240|ref|ZP_19840470.1| protein rtcB [Escherichia coli KTE66]
gi|431137620|gb|ELE39465.1| protein rtcB [Escherichia coli KTE66]
Length = 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432394001|ref|ZP_19636822.1| protein rtcB [Escherichia coli KTE21]
gi|430914879|gb|ELC35967.1| protein rtcB [Escherichia coli KTE21]
Length = 408
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WTELEVGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|217970128|ref|YP_002355362.1| hypothetical protein Tmz1t_1711 [Thauera sp. MZ1T]
gi|217507455|gb|ACK54466.1| protein of unknown function UPF0027 [Thauera sp. MZ1T]
Length = 398
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 69/162 (42%), Gaps = 38/162 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GTLG GNH+ E+ +DE W VM+HSGSRG G+ +AT E
Sbjct: 154 QMGTLGGGNHFIEV-CLDEKRRVW--------------VMLHSGSRGIGNAIATYFIE-- 196
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
K M+R I DR LA R S DY++++ A ++A NR +
Sbjct: 197 ------------LARKDMERHMIHLPDRDLAYFREGSPHFDDYVEAVHWAQDYAMANRQA 244
Query: 192 MTFLCRQAFAKQ---FNTTPDDLDMHVIYDVSHNIAKTEEHM 230
M L A+ F T + ++ H HN E H
Sbjct: 245 MLELVLAGLARHLPPFTVTTEAVNCH------HNYVAREHHF 280
>gi|251786670|ref|YP_003000974.1| hypothetical protein B21_03224 [Escherichia coli BL21(DE3)]
gi|254163348|ref|YP_003046456.1| hypothetical protein ECB_03272 [Escherichia coli B str. REL606]
gi|254290098|ref|YP_003055846.1| hypothetical protein ECD_03272 [Escherichia coli BL21(DE3)]
gi|297516017|ref|ZP_06934403.1| hypothetical protein EcolOP_00115 [Escherichia coli OP50]
gi|242378943|emb|CAQ33741.1| conserved protein [Escherichia coli BL21(DE3)]
gi|253975249|gb|ACT40920.1| hypothetical protein ECB_03272 [Escherichia coli B str. REL606]
gi|253979405|gb|ACT45075.1| hypothetical protein ECD_03272 [Escherichia coli BL21(DE3)]
Length = 408
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + AL Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT------------YFIALAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|422974071|ref|ZP_16976168.1| protein rtcB [Escherichia coli TA124]
gi|371596048|gb|EHN84891.1| protein rtcB [Escherichia coli TA124]
Length = 408
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 86/203 (42%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H+
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHL 290
>gi|419921406|ref|ZP_14439461.1| hypothetical protein EC54115_00793 [Escherichia coli 541-15]
gi|388397796|gb|EIL58758.1| hypothetical protein EC54115_00793 [Escherichia coli 541-15]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLMQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|418945580|ref|ZP_13498373.1| hypothetical protein T22_20382 [Escherichia coli O157:H43 str. T22]
gi|375319105|gb|EHS65358.1| hypothetical protein T22_20382 [Escherichia coli O157:H43 str. T22]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 86/203 (42%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E K
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKEMQEK 210
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
+ + + D LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 211 LETLPSRD--LAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|419223561|ref|ZP_13766473.1| hypothetical protein ECDEC8E_4390 [Escherichia coli DEC8E]
gi|378062002|gb|EHW24181.1| hypothetical protein ECDEC8E_4390 [Escherichia coli DEC8E]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|300822779|ref|ZP_07102916.1| putative protein RtcB [Escherichia coli MS 119-7]
gi|331670242|ref|ZP_08371081.1| protein RtcB [Escherichia coli TA271]
gi|331679484|ref|ZP_08380154.1| protein RtcB [Escherichia coli H591]
gi|417146646|ref|ZP_11987493.1| protein RtcB [Escherichia coli 1.2264]
gi|417223395|ref|ZP_12026835.1| protein RtcB [Escherichia coli 96.154]
gi|417267900|ref|ZP_12055261.1| protein RtcB [Escherichia coli 3.3884]
gi|417604290|ref|ZP_12254854.1| hypothetical protein ECSTEC94C_4120 [Escherichia coli STEC_94C]
gi|417668892|ref|ZP_12318431.1| hypothetical protein ECSTECO31_3737 [Escherichia coli STEC_O31]
gi|422778032|ref|ZP_16831683.1| rtcB protein [Escherichia coli H120]
gi|423707696|ref|ZP_17682076.1| protein rtcB [Escherichia coli B799]
gi|432378583|ref|ZP_19621566.1| protein rtcB [Escherichia coli KTE12]
gi|432836357|ref|ZP_20069889.1| protein rtcB [Escherichia coli KTE136]
gi|433093785|ref|ZP_20280040.1| protein rtcB [Escherichia coli KTE138]
gi|300524779|gb|EFK45848.1| putative protein RtcB [Escherichia coli MS 119-7]
gi|323944358|gb|EGB40433.1| rtcB protein [Escherichia coli H120]
gi|331062304|gb|EGI34224.1| protein RtcB [Escherichia coli TA271]
gi|331072656|gb|EGI43981.1| protein RtcB [Escherichia coli H591]
gi|345347658|gb|EGW79962.1| hypothetical protein ECSTEC94C_4120 [Escherichia coli STEC_94C]
gi|385709328|gb|EIG46326.1| protein rtcB [Escherichia coli B799]
gi|386162586|gb|EIH24382.1| protein RtcB [Escherichia coli 1.2264]
gi|386203197|gb|EII02188.1| protein RtcB [Escherichia coli 96.154]
gi|386230258|gb|EII57613.1| protein RtcB [Escherichia coli 3.3884]
gi|397783423|gb|EJK94282.1| hypothetical protein ECSTECO31_3737 [Escherichia coli STEC_O31]
gi|430896217|gb|ELC18461.1| protein rtcB [Escherichia coli KTE12]
gi|431382458|gb|ELG66796.1| protein rtcB [Escherichia coli KTE136]
gi|431607722|gb|ELI77077.1| protein rtcB [Escherichia coli KTE138]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|260857527|ref|YP_003231418.1| hypothetical protein ECO26_4508 [Escherichia coli O26:H11 str.
11368]
gi|260870146|ref|YP_003236548.1| hypothetical protein ECO111_4229 [Escherichia coli O111:H- str.
11128]
gi|415787784|ref|ZP_11494331.1| hypothetical protein ECEPECA14_3948 [Escherichia coli EPECa14]
gi|415820206|ref|ZP_11509395.1| hypothetical protein ECOK1180_2129 [Escherichia coli OK1180]
gi|417195622|ref|ZP_12015999.1| protein RtcB [Escherichia coli 4.0522]
gi|417210800|ref|ZP_12021217.1| protein RtcB [Escherichia coli JB1-95]
gi|417297173|ref|ZP_12084420.1| protein RtcB [Escherichia coli 900105 (10e)]
gi|417593815|ref|ZP_12244504.1| hypothetical protein EC253486_4440 [Escherichia coli 2534-86]
gi|419199121|ref|ZP_13742414.1| RNA-splicing ligase RtcB [Escherichia coli DEC8A]
gi|419205402|ref|ZP_13748565.1| hypothetical protein ECDEC8B_4440 [Escherichia coli DEC8B]
gi|419211874|ref|ZP_13754940.1| hypothetical protein ECDEC8C_5117 [Escherichia coli DEC8C]
gi|419217810|ref|ZP_13760804.1| hypothetical protein ECDEC8D_4612 [Escherichia coli DEC8D]
gi|419229038|ref|ZP_13771877.1| hypothetical protein ECDEC9A_4480 [Escherichia coli DEC9A]
gi|419234584|ref|ZP_13777351.1| hypothetical protein ECDEC9B_4105 [Escherichia coli DEC9B]
gi|419239936|ref|ZP_13782642.1| hypothetical protein ECDEC9C_4180 [Escherichia coli DEC9C]
gi|419245480|ref|ZP_13788113.1| hypothetical protein ECDEC9D_4096 [Escherichia coli DEC9D]
gi|419257032|ref|ZP_13799532.1| hypothetical protein ECDEC10A_4572 [Escherichia coli DEC10A]
gi|419263276|ref|ZP_13805683.1| hypothetical protein ECDEC10B_4886 [Escherichia coli DEC10B]
gi|419269299|ref|ZP_13811642.1| hypothetical protein ECDEC10C_4968 [Escherichia coli DEC10C]
gi|419275245|ref|ZP_13817528.1| hypothetical protein ECDEC10D_5053 [Escherichia coli DEC10D]
gi|419878571|ref|ZP_14400037.1| hypothetical protein ECO9534_13462 [Escherichia coli O111:H11 str.
CVM9534]
gi|419881462|ref|ZP_14402783.1| hypothetical protein ECO9545_25633 [Escherichia coli O111:H11 str.
CVM9545]
gi|419888111|ref|ZP_14408641.1| hypothetical protein ECO9570_24735 [Escherichia coli O111:H8 str.
CVM9570]
gi|419896596|ref|ZP_14416270.1| hypothetical protein ECO9574_09465 [Escherichia coli O111:H8 str.
CVM9574]
gi|419902543|ref|ZP_14421747.1| hypothetical protein ECO9942_10105 [Escherichia coli O26:H11 str.
CVM9942]
gi|419907051|ref|ZP_14425908.1| hypothetical protein ECO10026_24627 [Escherichia coli O26:H11 str.
CVM10026]
gi|420090521|ref|ZP_14602290.1| hypothetical protein ECO9602_15014 [Escherichia coli O111:H8 str.
CVM9602]
gi|420096615|ref|ZP_14607984.1| hypothetical protein ECO9634_18441 [Escherichia coli O111:H8 str.
CVM9634]
gi|420100975|ref|ZP_14612111.1| hypothetical protein ECO9455_28067 [Escherichia coli O111:H11 str.
CVM9455]
gi|420108826|ref|ZP_14619037.1| hypothetical protein ECO9553_19567 [Escherichia coli O111:H11 str.
CVM9553]
gi|420116032|ref|ZP_14625498.1| hypothetical protein ECO10021_09833 [Escherichia coli O26:H11 str.
CVM10021]
gi|420121410|ref|ZP_14630509.1| hypothetical protein ECO10030_18560 [Escherichia coli O26:H11 str.
CVM10030]
gi|420125953|ref|ZP_14634722.1| hypothetical protein ECO10224_06147 [Escherichia coli O26:H11 str.
CVM10224]
gi|420132119|ref|ZP_14640500.1| hypothetical protein ECO9952_19510 [Escherichia coli O26:H11 str.
CVM9952]
gi|424748669|ref|ZP_18176809.1| hypothetical protein CFSAN001629_08818 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424767068|ref|ZP_18194405.1| hypothetical protein CFSAN001630_29168 [Escherichia coli O111:H11
str. CFSAN001630]
gi|424770072|ref|ZP_18197288.1| hypothetical protein CFSAN001632_08535 [Escherichia coli O111:H8
str. CFSAN001632]
gi|425381694|ref|ZP_18765688.1| RNA-splicing ligase RtcB [Escherichia coli EC1865]
gi|257756176|dbj|BAI27678.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
gi|257766502|dbj|BAI37997.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
gi|323154257|gb|EFZ40460.1| hypothetical protein ECEPECA14_3948 [Escherichia coli EPECa14]
gi|323179054|gb|EFZ64628.1| hypothetical protein ECOK1180_2129 [Escherichia coli OK1180]
gi|345333402|gb|EGW65853.1| hypothetical protein EC253486_4440 [Escherichia coli 2534-86]
gi|378044078|gb|EHW06500.1| RNA-splicing ligase RtcB [Escherichia coli DEC8A]
gi|378044856|gb|EHW07266.1| hypothetical protein ECDEC8B_4440 [Escherichia coli DEC8B]
gi|378049662|gb|EHW12000.1| hypothetical protein ECDEC8C_5117 [Escherichia coli DEC8C]
gi|378058657|gb|EHW20865.1| hypothetical protein ECDEC8D_4612 [Escherichia coli DEC8D]
gi|378069509|gb|EHW31599.1| hypothetical protein ECDEC9A_4480 [Escherichia coli DEC9A]
gi|378074366|gb|EHW36403.1| hypothetical protein ECDEC9B_4105 [Escherichia coli DEC9B]
gi|378080382|gb|EHW42345.1| hypothetical protein ECDEC9C_4180 [Escherichia coli DEC9C]
gi|378087465|gb|EHW49325.1| hypothetical protein ECDEC9D_4096 [Escherichia coli DEC9D]
gi|378097590|gb|EHW59342.1| hypothetical protein ECDEC10A_4572 [Escherichia coli DEC10A]
gi|378102841|gb|EHW64513.1| hypothetical protein ECDEC10B_4886 [Escherichia coli DEC10B]
gi|378107688|gb|EHW69307.1| hypothetical protein ECDEC10C_4968 [Escherichia coli DEC10C]
gi|378112346|gb|EHW73925.1| hypothetical protein ECDEC10D_5053 [Escherichia coli DEC10D]
gi|386189140|gb|EIH77907.1| protein RtcB [Escherichia coli 4.0522]
gi|386195404|gb|EIH89639.1| protein RtcB [Escherichia coli JB1-95]
gi|386260617|gb|EIJ16091.1| protein RtcB [Escherichia coli 900105 (10e)]
gi|388334658|gb|EIL01241.1| hypothetical protein ECO9534_13462 [Escherichia coli O111:H11 str.
CVM9534]
gi|388357367|gb|EIL21945.1| hypothetical protein ECO9574_09465 [Escherichia coli O111:H8 str.
CVM9574]
gi|388361048|gb|EIL25191.1| hypothetical protein ECO9570_24735 [Escherichia coli O111:H8 str.
CVM9570]
gi|388365079|gb|EIL28888.1| hypothetical protein ECO9545_25633 [Escherichia coli O111:H11 str.
CVM9545]
gi|388373737|gb|EIL36979.1| hypothetical protein ECO9942_10105 [Escherichia coli O26:H11 str.
CVM9942]
gi|388377971|gb|EIL40751.1| hypothetical protein ECO10026_24627 [Escherichia coli O26:H11 str.
CVM10026]
gi|394385930|gb|EJE63446.1| hypothetical protein ECO9602_15014 [Escherichia coli O111:H8 str.
CVM9602]
gi|394388426|gb|EJE65708.1| hypothetical protein ECO9634_18441 [Escherichia coli O111:H8 str.
CVM9634]
gi|394393726|gb|EJE70379.1| hypothetical protein ECO10224_06147 [Escherichia coli O26:H11 str.
CVM10224]
gi|394404869|gb|EJE80182.1| hypothetical protein ECO10021_09833 [Escherichia coli O26:H11 str.
CVM10021]
gi|394408642|gb|EJE83281.1| hypothetical protein ECO9553_19567 [Escherichia coli O111:H11 str.
CVM9553]
gi|394418497|gb|EJE92171.1| hypothetical protein ECO9455_28067 [Escherichia coli O111:H11 str.
CVM9455]
gi|394425991|gb|EJE98887.1| hypothetical protein ECO10030_18560 [Escherichia coli O26:H11 str.
CVM10030]
gi|394430341|gb|EJF02684.1| hypothetical protein ECO9952_19510 [Escherichia coli O26:H11 str.
CVM9952]
gi|408294200|gb|EKJ12611.1| RNA-splicing ligase RtcB [Escherichia coli EC1865]
gi|421933305|gb|EKT91098.1| hypothetical protein CFSAN001630_29168 [Escherichia coli O111:H11
str. CFSAN001630]
gi|421943225|gb|EKU00517.1| hypothetical protein CFSAN001632_08535 [Escherichia coli O111:H8
str. CFSAN001632]
gi|421944276|gb|EKU01537.1| hypothetical protein CFSAN001629_08818 [Escherichia coli O26:H11
str. CFSAN001629]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|418040703|ref|ZP_12678939.1| hypothetical protein ECW26_11680 [Escherichia coli W26]
gi|383476420|gb|EID68363.1| hypothetical protein ECW26_11680 [Escherichia coli W26]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|417165344|ref|ZP_11999406.1| protein RtcB [Escherichia coli 99.0741]
gi|386172324|gb|EIH44354.1| protein RtcB [Escherichia coli 99.0741]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|193068747|ref|ZP_03049707.1| RtcB protein [Escherichia coli E110019]
gi|432676525|ref|ZP_19911972.1| protein rtcB [Escherichia coli KTE142]
gi|192957823|gb|EDV88266.1| RtcB protein [Escherichia coli E110019]
gi|431211509|gb|ELF09475.1| protein rtcB [Escherichia coli KTE142]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---T 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|419286329|ref|ZP_13828491.1| hypothetical protein ECDEC10F_5022 [Escherichia coli DEC10F]
gi|378126294|gb|EHW87689.1| hypothetical protein ECDEC10F_5022 [Escherichia coli DEC10F]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|167590759|ref|ZP_02383147.1| hypothetical protein BuboB_35813 [Burkholderia ubonensis Bu]
Length = 380
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 44/180 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G+GNH+AE+Q +D +YD A +G+ D G++ +++HSGSRGFG +
Sbjct: 129 LGTIGSGNHFAELQKLDTVYDAEAVQALGL-DRGRLQLLVHSGSRGFGQSI--------- 178
Query: 133 CMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+E+ M +D CA YL+ A +A NR
Sbjct: 179 ------------LERHMAAHGYNALDDTHAECA--------AYLRRHDEALRYAVANRD- 217
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ A+ ++ + DV+HN+ +VDG L HRK + P+ G
Sbjct: 218 --LIARRMLARWRSSG------QRVLDVNHNL--VSRAVVDGVPGWL--HRKGATPADAG 265
>gi|333978935|ref|YP_004516880.1| hypothetical protein Desku_1497 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822416|gb|AEG15079.1| protein of unknown function UPF0027 [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 384
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 77/181 (42%), Gaps = 54/181 (29%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGTLG GNH+ EIQ +D V +M+HSGSR FG +VA
Sbjct: 138 QLGTLGGGNHFIEIQ---------------RDDQDHVWIMLHSGSRNFGKKVA------- 175
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDR---------QLACARINSKEGQDYLKSMAAAA 182
R I N+R QLA +++ EGQ+YL +M
Sbjct: 176 ---------------DYYNRLAINLNERYGPPVPREWQLAYLPLDTHEGQNYLAAMQYCL 220
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
FA NR+ M +A + ++ D DV HN A E+H G+Q ++VHR
Sbjct: 221 EFARENRAHMM----KAILEICHSLLPDFTWGEELDVHHNYAFLEKHF--GQQ--VMVHR 272
Query: 243 K 243
K
Sbjct: 273 K 273
>gi|419862187|ref|ZP_14384803.1| hypothetical protein ECO9340_19138 [Escherichia coli O103:H25 str.
CVM9340]
gi|388345712|gb|EIL11461.1| hypothetical protein ECO9340_19138 [Escherichia coli O103:H25 str.
CVM9340]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|338529911|ref|YP_004663245.1| hypothetical protein LILAB_01175 [Myxococcus fulvus HW-1]
gi|337256007|gb|AEI62167.1| hypothetical protein LILAB_01175 [Myxococcus fulvus HW-1]
Length = 474
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 27/154 (17%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG---KCE 129
L T+G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGSR G V +
Sbjct: 219 LATIGGGNHFVEVQRVEAVEDRARAWGWGVRE-GQLAFMIHSGSRDVGKHVGVAWQDRAR 277
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
+ + P++ + + D +L + YL++ A AAN+A++NR
Sbjct: 278 QAWPVGAPLPESGI----------LPLGDARLV---------EQYLEAEATAANYAFLNR 318
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNI 223
+ L RQ + F D++ ++YDV HN+
Sbjct: 319 LLLAELLRQTLRELFG----DVEAPLVYDVPHNL 348
>gi|417830490|ref|ZP_12477026.1| conserved protein [Shigella flexneri J1713]
gi|420323148|ref|ZP_14824964.1| RNA-splicing ligase RtcB [Shigella flexneri 2850-71]
gi|424839638|ref|ZP_18264275.1| hypothetical protein SF5M90T_3351 [Shigella flexneri 5a str. M90T]
gi|335573145|gb|EGM59508.1| conserved protein [Shigella flexneri J1713]
gi|383468690|gb|EID63711.1| hypothetical protein SF5M90T_3351 [Shigella flexneri 5a str. M90T]
gi|391244098|gb|EIQ03385.1| RNA-splicing ligase RtcB [Shigella flexneri 2850-71]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|258651939|ref|YP_003201095.1| hypothetical protein Namu_1716 [Nakamurella multipartita DSM 44233]
gi|258555164|gb|ACV78106.1| protein of unknown function UPF0027 [Nakamurella multipartita DSM
44233]
Length = 390
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 57/242 (23%)
Query: 14 IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQL 73
+IP++A +L++G + GY+ +E + DP+ R K QL
Sbjct: 102 LIPLSAGHHNRSLDVGPN---TRGYL--------DELTDLATFDPA----RHAKSWAQQL 146
Query: 74 GTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA---TGKCEK 130
G+LG+GNH+ E+ DE W + +HSGSRG G+++A G ++
Sbjct: 147 GSLGSGNHFIEVT-ADEAQTVW--------------LFLHSGSRGVGNRIAQHHIGVAQR 191
Query: 131 ITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
T ++ I+ DR LA + E Y++ + A FAW+NR
Sbjct: 192 YT-----------------EKHWIQLPDRDLAYLVEGTAEFDQYIEELTWAQRFAWLNRR 234
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
M AF + T + ++ + HN E H K + V RK + +H
Sbjct: 235 EMMDRVELAFGEHLGTPVEPVETIACH---HNYTARETHW----GKPVWVSRKGAIDAHA 287
Query: 251 GV 252
GV
Sbjct: 288 GV 289
>gi|427786649|gb|JAA58776.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 161
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 33/42 (78%), Gaps = 4/42 (9%)
Query: 213 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVS----EPSHP 250
MHVIYDVSHNIAK E+H+VDGK +TLLVHRK S P HP
Sbjct: 1 MHVIYDVSHNIAKVEQHVVDGKMRTLLVHRKGSTRAFPPHHP 42
>gi|427778599|gb|JAA54751.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 174
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 33/42 (78%), Gaps = 4/42 (9%)
Query: 213 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHP 250
MHVIYDVSHNIAK E+H+VDGK +TLLVHRK S P HP
Sbjct: 1 MHVIYDVSHNIAKVEQHVVDGKMRTLLVHRKGSTRAFPPHHP 42
>gi|74313923|ref|YP_312342.1| hypothetical protein SSON_3552 [Shigella sonnei Ss046]
gi|420365364|ref|ZP_14866231.1| hypothetical protein SS482266_3831 [Shigella sonnei 4822-66]
gi|73857400|gb|AAZ90107.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|391292393|gb|EIQ50729.1| hypothetical protein SS482266_3831 [Shigella sonnei 4822-66]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|417175336|ref|ZP_12005132.1| protein RtcB [Escherichia coli 3.2608]
gi|386178028|gb|EIH55507.1| protein RtcB [Escherichia coli 3.2608]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|241625287|ref|XP_002409445.1| hypothetical protein IscW_ISCW024552 [Ixodes scapularis]
gi|215503163|gb|EEC12657.1| hypothetical protein IscW_ISCW024552 [Ixodes scapularis]
Length = 161
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 33/42 (78%), Gaps = 4/42 (9%)
Query: 213 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHP 250
MHVIYDVSHNIAK E+H+VDGK +TLLVHRK S P HP
Sbjct: 1 MHVIYDVSHNIAKVEQHVVDGKMRTLLVHRKGSTRAFPPHHP 42
>gi|293412838|ref|ZP_06655506.1| RtcB [Escherichia coli B354]
gi|291468485|gb|EFF10978.1| RtcB [Escherichia coli B354]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WTELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432442901|ref|ZP_19685236.1| protein rtcB [Escherichia coli KTE189]
gi|432448020|ref|ZP_19690316.1| protein rtcB [Escherichia coli KTE191]
gi|433015718|ref|ZP_20204051.1| protein rtcB [Escherichia coli KTE104]
gi|433025282|ref|ZP_20213254.1| protein rtcB [Escherichia coli KTE106]
gi|433324371|ref|ZP_20401667.1| hypothetical protein B185_012643 [Escherichia coli J96]
gi|430963944|gb|ELC81523.1| protein rtcB [Escherichia coli KTE189]
gi|430971100|gb|ELC88122.1| protein rtcB [Escherichia coli KTE191]
gi|431527094|gb|ELI03821.1| protein rtcB [Escherichia coli KTE104]
gi|431531632|gb|ELI08289.1| protein rtcB [Escherichia coli KTE106]
gi|432347217|gb|ELL41680.1| hypothetical protein B185_012643 [Escherichia coli J96]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|374369165|ref|ZP_09627202.1| hypothetical protein OR16_26188 [Cupriavidus basilensis OR16]
gi|373099315|gb|EHP40399.1| hypothetical protein OR16_26188 [Cupriavidus basilensis OR16]
Length = 270
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 44/177 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q +DEI D+ A + +G+E ++ +++HSGSRG G
Sbjct: 20 LGTIGGGNHFAEVQQIDEILDQAAVAALGLERR-RLVLLVHSGSRGLG------------ 66
Query: 133 CMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+A+ +D+IE D L+ S++G DYL A A FA NR
Sbjct: 67 --------------QAILQDHIERFGDNGLSG---GSQDGADYLARHAQALRFAQGNRE- 108
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
+ R+ + L DV HN +DG L HRK + P+
Sbjct: 109 --LVARRMLDRLHGGGERAL------DVDHNFLAAA--TIDGIAGWL--HRKGATPA 153
>gi|417625490|ref|ZP_12275781.1| hypothetical protein ECSTECH18_4268 [Escherichia coli STEC_H.1.8]
gi|345373554|gb|EGX05513.1| hypothetical protein ECSTECH18_4268 [Escherichia coli STEC_H.1.8]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|194426996|ref|ZP_03059548.1| RtcB protein [Escherichia coli B171]
gi|417184296|ref|ZP_12009988.1| protein RtcB [Escherichia coli 93.0624]
gi|417249415|ref|ZP_12041199.1| protein RtcB [Escherichia coli 4.0967]
gi|419291603|ref|ZP_13833687.1| hypothetical protein ECDEC11A_3992 [Escherichia coli DEC11A]
gi|419296890|ref|ZP_13838926.1| hypothetical protein ECDEC11B_3994 [Escherichia coli DEC11B]
gi|419308418|ref|ZP_13850310.1| RNA-splicing ligase RtcB [Escherichia coli DEC11D]
gi|419313443|ref|ZP_13855301.1| RNA-splicing ligase RtcB [Escherichia coli DEC11E]
gi|419318860|ref|ZP_13860657.1| RNA-splicing ligase RtcB [Escherichia coli DEC12A]
gi|419325124|ref|ZP_13866810.1| hypothetical protein ECDEC12B_4653 [Escherichia coli DEC12B]
gi|419331067|ref|ZP_13872662.1| RNA-splicing ligase RtcB [Escherichia coli DEC12C]
gi|419336550|ref|ZP_13878067.1| hypothetical protein ECDEC12D_4327 [Escherichia coli DEC12D]
gi|419341965|ref|ZP_13883419.1| hypothetical protein ECDEC12E_4115 [Escherichia coli DEC12E]
gi|419871295|ref|ZP_14393354.1| hypothetical protein ECO9450_15077 [Escherichia coli O103:H2 str.
CVM9450]
gi|420393520|ref|ZP_14892765.1| hypothetical protein ECEPECC34262_4384 [Escherichia coli EPEC
C342-62]
gi|194414957|gb|EDX31227.1| RtcB protein [Escherichia coli B171]
gi|378125985|gb|EHW87382.1| hypothetical protein ECDEC11A_3992 [Escherichia coli DEC11A]
gi|378138719|gb|EHW99970.1| hypothetical protein ECDEC11B_3994 [Escherichia coli DEC11B]
gi|378145512|gb|EHX06676.1| RNA-splicing ligase RtcB [Escherichia coli DEC11D]
gi|378155362|gb|EHX16421.1| RNA-splicing ligase RtcB [Escherichia coli DEC11E]
gi|378161964|gb|EHX22932.1| hypothetical protein ECDEC12B_4653 [Escherichia coli DEC12B]
gi|378165757|gb|EHX26687.1| RNA-splicing ligase RtcB [Escherichia coli DEC12A]
gi|378166693|gb|EHX27614.1| RNA-splicing ligase RtcB [Escherichia coli DEC12C]
gi|378179774|gb|EHX40482.1| hypothetical protein ECDEC12D_4327 [Escherichia coli DEC12D]
gi|378183570|gb|EHX44212.1| hypothetical protein ECDEC12E_4115 [Escherichia coli DEC12E]
gi|386183858|gb|EIH66605.1| protein RtcB [Escherichia coli 93.0624]
gi|386219736|gb|EII36200.1| protein RtcB [Escherichia coli 4.0967]
gi|388337474|gb|EIL03975.1| hypothetical protein ECO9450_15077 [Escherichia coli O103:H2 str.
CVM9450]
gi|391310361|gb|EIQ68016.1| hypothetical protein ECEPECC34262_4384 [Escherichia coli EPEC
C342-62]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|193061848|ref|ZP_03042945.1| RtcB protein [Escherichia coli E22]
gi|192932638|gb|EDV85235.1| RtcB protein [Escherichia coli E22]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|16131295|ref|NP_417879.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|170082936|ref|YP_001732256.1| hypothetical protein ECDH10B_3595 [Escherichia coli str. K-12
substr. DH10B]
gi|191167301|ref|ZP_03029118.1| RtcB protein [Escherichia coli B7A]
gi|209920878|ref|YP_002294962.1| hypothetical protein ECSE_3687 [Escherichia coli SE11]
gi|218555969|ref|YP_002388882.1| hypothetical protein ECIAI1_3564 [Escherichia coli IAI1]
gi|238902514|ref|YP_002928310.1| hypothetical protein BWG_3114 [Escherichia coli BW2952]
gi|253771750|ref|YP_003034581.1| hypothetical protein ECBD_0321 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|300946834|ref|ZP_07161076.1| putative protein RtcB [Escherichia coli MS 116-1]
gi|300956753|ref|ZP_07169021.1| putative protein RtcB [Escherichia coli MS 175-1]
gi|301021767|ref|ZP_07185732.1| putative protein RtcB [Escherichia coli MS 196-1]
gi|301645862|ref|ZP_07245776.1| putative protein RtcB [Escherichia coli MS 146-1]
gi|309794694|ref|ZP_07689116.1| putative protein RtcB [Escherichia coli MS 145-7]
gi|331644121|ref|ZP_08345250.1| protein RtcB [Escherichia coli H736]
gi|386593872|ref|YP_006090272.1| hypothetical protein [Escherichia coli DH1]
gi|386616204|ref|YP_006135870.1| hypothetical protein UMNK88_4188 [Escherichia coli UMNK88]
gi|387614094|ref|YP_006117210.1| hypothetical protein ETEC_3670 [Escherichia coli ETEC H10407]
gi|387623072|ref|YP_006130700.1| hypothetical protein ECDH1ME8569_3299 [Escherichia coli DH1]
gi|388479818|ref|YP_492012.1| hypothetical protein Y75_p3756 [Escherichia coli str. K-12 substr.
W3110]
gi|404376793|ref|ZP_10981945.1| protein rtcB [Escherichia sp. 1_1_43]
gi|415779655|ref|ZP_11490296.1| uncharacterized family UPF0027 family protein [Escherichia coli
3431]
gi|415830985|ref|ZP_11516783.1| hypothetical protein ECOK1357_3769 [Escherichia coli OK1357]
gi|417131811|ref|ZP_11976596.1| protein RtcB [Escherichia coli 5.0588]
gi|417228698|ref|ZP_12030456.1| protein RtcB [Escherichia coli 5.0959]
gi|417273011|ref|ZP_12060360.1| protein RtcB [Escherichia coli 2.4168]
gi|417276165|ref|ZP_12063497.1| protein RtcB [Escherichia coli 3.2303]
gi|417292033|ref|ZP_12079314.1| protein RtcB [Escherichia coli B41]
gi|417615021|ref|ZP_12265474.1| hypothetical protein ECSTECEH250_4116 [Escherichia coli STEC_EH250]
gi|417945180|ref|ZP_12588416.1| hypothetical protein IAE_09297 [Escherichia coli XH140A]
gi|417977013|ref|ZP_12617801.1| hypothetical protein IAM_11798 [Escherichia coli XH001]
gi|418956189|ref|ZP_13508117.1| putative protein RtcB [Escherichia coli J53]
gi|419144506|ref|ZP_13689236.1| RNA-splicing ligase RtcB [Escherichia coli DEC6A]
gi|419150252|ref|ZP_13694900.1| hypothetical protein ECDEC6B_4418 [Escherichia coli DEC6B]
gi|419155897|ref|ZP_13700453.1| RNA-splicing ligase RtcB [Escherichia coli DEC6C]
gi|419161238|ref|ZP_13705734.1| RNA-splicing ligase RtcB [Escherichia coli DEC6D]
gi|419166295|ref|ZP_13710745.1| hypothetical protein ECDEC6E_4054 [Escherichia coli DEC6E]
gi|419811675|ref|ZP_14336548.1| hypothetical protein UWO_14226 [Escherichia coli O32:H37 str. P4]
gi|419940286|ref|ZP_14457034.1| hypothetical protein EC75_13400 [Escherichia coli 75]
gi|422353322|ref|ZP_16434082.1| putative protein RtcB [Escherichia coli MS 117-3]
gi|422768790|ref|ZP_16822514.1| rtcB [Escherichia coli E1520]
gi|422818580|ref|ZP_16866792.1| protein rtcB [Escherichia coli M919]
gi|423702922|ref|ZP_17677354.1| protein rtcB [Escherichia coli H730]
gi|425116983|ref|ZP_18518768.1| RNA-splicing ligase RtcB [Escherichia coli 8.0566]
gi|425121732|ref|ZP_18523415.1| RNA-splicing ligase RtcB [Escherichia coli 8.0569]
gi|425274620|ref|ZP_18666015.1| RNA-splicing ligase RtcB [Escherichia coli TW15901]
gi|425285199|ref|ZP_18676226.1| RNA-splicing ligase RtcB [Escherichia coli TW00353]
gi|432418942|ref|ZP_19661535.1| protein rtcB [Escherichia coli KTE44]
gi|432565786|ref|ZP_19802346.1| protein rtcB [Escherichia coli KTE51]
gi|432577647|ref|ZP_19814096.1| protein rtcB [Escherichia coli KTE56]
gi|432629048|ref|ZP_19865016.1| protein rtcB [Escherichia coli KTE77]
gi|432638624|ref|ZP_19874489.1| protein rtcB [Escherichia coli KTE81]
gi|432662627|ref|ZP_19898261.1| protein rtcB [Escherichia coli KTE111]
gi|432687236|ref|ZP_19922526.1| protein rtcB [Escherichia coli KTE156]
gi|432706153|ref|ZP_19941248.1| protein rtcB [Escherichia coli KTE171]
gi|432738916|ref|ZP_19973650.1| protein rtcB [Escherichia coli KTE42]
gi|432751867|ref|ZP_19986446.1| protein rtcB [Escherichia coli KTE29]
gi|432829034|ref|ZP_20062651.1| protein rtcB [Escherichia coli KTE135]
gi|432949596|ref|ZP_20144377.1| protein rtcB [Escherichia coli KTE196]
gi|432957271|ref|ZP_20148774.1| protein rtcB [Escherichia coli KTE197]
gi|433044935|ref|ZP_20232420.1| protein rtcB [Escherichia coli KTE117]
gi|433049857|ref|ZP_20237190.1| protein rtcB [Escherichia coli KTE120]
gi|442593914|ref|ZP_21011840.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|450251565|ref|ZP_21901890.1| hypothetical protein C201_16150 [Escherichia coli S17]
gi|2851429|sp|P46850.3|RTCB_ECOLI RecName: Full=RNA-splicing ligase RtcB
gi|2367224|gb|AAC76446.1| hypothetical protein b3421 [Escherichia coli str. K-12 substr.
MG1655]
gi|85676621|dbj|BAE77871.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
W3110]
gi|169890771|gb|ACB04478.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
gi|190902653|gb|EDV62385.1| RtcB protein [Escherichia coli B7A]
gi|209914137|dbj|BAG79211.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218362737|emb|CAR00363.1| conserved hypothetical protein [Escherichia coli IAI1]
gi|226839094|gb|EEH71117.1| protein rtcB [Escherichia sp. 1_1_43]
gi|238860393|gb|ACR62391.1| conserved protein [Escherichia coli BW2952]
gi|253322794|gb|ACT27396.1| protein of unknown function UPF0027 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447561|gb|ACX37983.1| protein of unknown function UPF0027 [Escherichia coli DH1]
gi|299881459|gb|EFI89670.1| putative protein RtcB [Escherichia coli MS 196-1]
gi|300316449|gb|EFJ66233.1| putative protein RtcB [Escherichia coli MS 175-1]
gi|300453514|gb|EFK17134.1| putative protein RtcB [Escherichia coli MS 116-1]
gi|301075851|gb|EFK90657.1| putative protein RtcB [Escherichia coli MS 146-1]
gi|308121744|gb|EFO59006.1| putative protein RtcB [Escherichia coli MS 145-7]
gi|309703830|emb|CBJ03171.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|315137996|dbj|BAJ45155.1| hypothetical protein ECDH1ME8569_3299 [Escherichia coli DH1]
gi|315614689|gb|EFU95329.1| uncharacterized family UPF0027 family protein [Escherichia coli
3431]
gi|323182881|gb|EFZ68282.1| hypothetical protein ECOK1357_3769 [Escherichia coli OK1357]
gi|323934590|gb|EGB30990.1| rtcB [Escherichia coli E1520]
gi|324018659|gb|EGB87878.1| putative protein RtcB [Escherichia coli MS 117-3]
gi|331036415|gb|EGI08641.1| protein RtcB [Escherichia coli H736]
gi|332345373|gb|AEE58707.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|342363158|gb|EGU27269.1| hypothetical protein IAE_09297 [Escherichia coli XH140A]
gi|344193280|gb|EGV47362.1| hypothetical protein IAM_11798 [Escherichia coli XH001]
gi|345359412|gb|EGW91589.1| hypothetical protein ECSTECEH250_4116 [Escherichia coli STEC_EH250]
gi|359333587|dbj|BAL40034.1| conserved protein [Escherichia coli str. K-12 substr. MDS42]
gi|377989543|gb|EHV52709.1| hypothetical protein ECDEC6B_4418 [Escherichia coli DEC6B]
gi|377990751|gb|EHV53909.1| RNA-splicing ligase RtcB [Escherichia coli DEC6A]
gi|377993574|gb|EHV56706.1| RNA-splicing ligase RtcB [Escherichia coli DEC6C]
gi|378004789|gb|EHV67800.1| RNA-splicing ligase RtcB [Escherichia coli DEC6D]
gi|378007030|gb|EHV70000.1| hypothetical protein ECDEC6E_4054 [Escherichia coli DEC6E]
gi|384380949|gb|EIE38812.1| putative protein RtcB [Escherichia coli J53]
gi|385155444|gb|EIF17447.1| hypothetical protein UWO_14226 [Escherichia coli O32:H37 str. P4]
gi|385537986|gb|EIF84853.1| protein rtcB [Escherichia coli M919]
gi|385709656|gb|EIG46653.1| protein rtcB [Escherichia coli H730]
gi|386149665|gb|EIH00954.1| protein RtcB [Escherichia coli 5.0588]
gi|386208033|gb|EII12538.1| protein RtcB [Escherichia coli 5.0959]
gi|386236711|gb|EII68687.1| protein RtcB [Escherichia coli 2.4168]
gi|386241416|gb|EII78334.1| protein RtcB [Escherichia coli 3.2303]
gi|386254355|gb|EIJ04045.1| protein RtcB [Escherichia coli B41]
gi|388403535|gb|EIL64040.1| hypothetical protein EC75_13400 [Escherichia coli 75]
gi|408190823|gb|EKI16455.1| RNA-splicing ligase RtcB [Escherichia coli TW15901]
gi|408199585|gb|EKI24784.1| RNA-splicing ligase RtcB [Escherichia coli TW00353]
gi|408564616|gb|EKK40718.1| RNA-splicing ligase RtcB [Escherichia coli 8.0566]
gi|408565751|gb|EKK41833.1| RNA-splicing ligase RtcB [Escherichia coli 8.0569]
gi|430936720|gb|ELC56988.1| protein rtcB [Escherichia coli KTE44]
gi|431090382|gb|ELD96151.1| protein rtcB [Escherichia coli KTE51]
gi|431112741|gb|ELE16423.1| protein rtcB [Escherichia coli KTE56]
gi|431160918|gb|ELE61419.1| protein rtcB [Escherichia coli KTE77]
gi|431168946|gb|ELE69178.1| protein rtcB [Escherichia coli KTE81]
gi|431197209|gb|ELE96075.1| protein rtcB [Escherichia coli KTE111]
gi|431219671|gb|ELF17065.1| protein rtcB [Escherichia coli KTE156]
gi|431240833|gb|ELF35281.1| protein rtcB [Escherichia coli KTE171]
gi|431279944|gb|ELF70891.1| protein rtcB [Escherichia coli KTE42]
gi|431293807|gb|ELF84090.1| protein rtcB [Escherichia coli KTE29]
gi|431383106|gb|ELG67247.1| protein rtcB [Escherichia coli KTE135]
gi|431454143|gb|ELH34521.1| protein rtcB [Escherichia coli KTE196]
gi|431464840|gb|ELH44958.1| protein rtcB [Escherichia coli KTE197]
gi|431553677|gb|ELI27602.1| protein rtcB [Escherichia coli KTE117]
gi|431562523|gb|ELI35825.1| protein rtcB [Escherichia coli KTE120]
gi|441606187|emb|CCP97120.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|449315437|gb|EMD05580.1| hypothetical protein C201_16150 [Escherichia coli S17]
Length = 408
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|425307210|ref|ZP_18696886.1| RNA-splicing ligase RtcB [Escherichia coli N1]
gi|408226115|gb|EKI49774.1| RNA-splicing ligase RtcB [Escherichia coli N1]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|417264102|ref|ZP_12051496.1| protein RtcB [Escherichia coli 2.3916]
gi|417636514|ref|ZP_12286723.1| hypothetical protein ECSTECS1191_4473 [Escherichia coli STEC_S1191]
gi|418305048|ref|ZP_12916842.1| uncharacterized protein family [Escherichia coli UMNF18]
gi|339417146|gb|AEJ58818.1| uncharacterized protein family [Escherichia coli UMNF18]
gi|345385402|gb|EGX15247.1| hypothetical protein ECSTECS1191_4473 [Escherichia coli STEC_S1191]
gi|386221811|gb|EII44240.1| protein RtcB [Escherichia coli 2.3916]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|415810587|ref|ZP_11502954.1| hypothetical protein ECLT68_1268 [Escherichia coli LT-68]
gi|323174055|gb|EFZ59683.1| hypothetical protein ECLT68_1268 [Escherichia coli LT-68]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|301019556|ref|ZP_07183719.1| putative protein RtcB [Escherichia coli MS 69-1]
gi|417141518|ref|ZP_11984431.1| protein RtcB [Escherichia coli 97.0259]
gi|417309920|ref|ZP_12096747.1| Protein rtcB [Escherichia coli PCN033]
gi|417630806|ref|ZP_12281040.1| hypothetical protein ECSTECMHI813_3756 [Escherichia coli
STEC_MHI813]
gi|419918648|ref|ZP_14436828.1| hypothetical protein ECKD2_11608 [Escherichia coli KD2]
gi|300399211|gb|EFJ82749.1| putative protein RtcB [Escherichia coli MS 69-1]
gi|338768525|gb|EGP23318.1| Protein rtcB [Escherichia coli PCN033]
gi|345370085|gb|EGX02063.1| hypothetical protein ECSTECMHI813_3756 [Escherichia coli
STEC_MHI813]
gi|386156008|gb|EIH12358.1| protein RtcB [Escherichia coli 97.0259]
gi|388389764|gb|EIL51282.1| hypothetical protein ECKD2_11608 [Escherichia coli KD2]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|226357200|ref|YP_002786940.1| hypothetical protein Deide_21600 [Deinococcus deserti VCD115]
gi|226319190|gb|ACO47186.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 467
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GT G+GNH+ E + K + +G+E + V+ HSGSRGFG QVA
Sbjct: 215 QIGTSGSGNHFVEFGTL-----KLREADLGMEPGEYLAVLSHSGSRGFGAQVAG----HF 265
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
T +A N++ ++LA +++ EG+ Y ++M A +A N
Sbjct: 266 TALAQKL------------HPNLDRAAQKLAWLPMDTHEGEAYWQAMNLAGRYALANHD- 312
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L + A N P SHN+A + H + + L+VHRK + P+ G
Sbjct: 313 ---LIHRRLAHALNVRPT-----AQVSNSHNLAWKQIH----QGRELIVHRKGATPAERG 360
>gi|218697103|ref|YP_002404770.1| hypothetical protein EC55989_3828 [Escherichia coli 55989]
gi|407471371|ref|YP_006782186.1| hypothetical protein O3O_23690 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407479973|ref|YP_006777122.1| hypothetical protein O3K_01960 [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480534|ref|YP_006768080.1| hypothetical protein O3M_02005 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|417807055|ref|ZP_12453987.1| hypothetical protein HUSEC_19307 [Escherichia coli O104:H4 str.
LB226692]
gi|417834795|ref|ZP_12481237.1| hypothetical protein HUSEC41_18943 [Escherichia coli O104:H4 str.
01-09591]
gi|417866522|ref|ZP_12511563.1| rtcB [Escherichia coli O104:H4 str. C227-11]
gi|422989599|ref|ZP_16980371.1| protein rtcB [Escherichia coli O104:H4 str. C227-11]
gi|422996494|ref|ZP_16987257.1| protein rtcB [Escherichia coli O104:H4 str. C236-11]
gi|423001644|ref|ZP_16992397.1| protein rtcB [Escherichia coli O104:H4 str. 09-7901]
gi|423005303|ref|ZP_16996048.1| protein rtcB [Escherichia coli O104:H4 str. 04-8351]
gi|423011809|ref|ZP_17002541.1| protein rtcB [Escherichia coli O104:H4 str. 11-3677]
gi|423021036|ref|ZP_17011743.1| protein rtcB [Escherichia coli O104:H4 str. 11-4404]
gi|423026201|ref|ZP_17016896.1| protein rtcB [Escherichia coli O104:H4 str. 11-4522]
gi|423032020|ref|ZP_17022706.1| protein rtcB [Escherichia coli O104:H4 str. 11-4623]
gi|423034892|ref|ZP_17025570.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423040020|ref|ZP_17030689.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046704|ref|ZP_17037363.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055241|ref|ZP_17044047.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057233|ref|ZP_17046032.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C5]
gi|429721065|ref|ZP_19255986.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772962|ref|ZP_19304980.1| protein rtcB [Escherichia coli O104:H4 str. 11-02030]
gi|429778328|ref|ZP_19310296.1| protein rtcB [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786634|ref|ZP_19318527.1| protein rtcB [Escherichia coli O104:H4 str. 11-02092]
gi|429787578|ref|ZP_19319468.1| protein rtcB [Escherichia coli O104:H4 str. 11-02093]
gi|429793374|ref|ZP_19325220.1| protein rtcB [Escherichia coli O104:H4 str. 11-02281]
gi|429799954|ref|ZP_19331747.1| protein rtcB [Escherichia coli O104:H4 str. 11-02318]
gi|429803569|ref|ZP_19335327.1| protein rtcB [Escherichia coli O104:H4 str. 11-02913]
gi|429808210|ref|ZP_19339930.1| protein rtcB [Escherichia coli O104:H4 str. 11-03439]
gi|429813910|ref|ZP_19345586.1| protein rtcB [Escherichia coli O104:H4 str. 11-04080]
gi|429819120|ref|ZP_19350752.1| protein rtcB [Escherichia coli O104:H4 str. 11-03943]
gi|429905469|ref|ZP_19371445.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909606|ref|ZP_19375568.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915476|ref|ZP_19381422.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920523|ref|ZP_19386450.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926327|ref|ZP_19392238.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930262|ref|ZP_19396162.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936800|ref|ZP_19402685.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942482|ref|ZP_19408354.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945165|ref|ZP_19411025.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952720|ref|ZP_19418565.1| protein rtcB [Escherichia coli O104:H4 str. Ec12-0465]
gi|429956075|ref|ZP_19421905.1| protein rtcB [Escherichia coli O104:H4 str. Ec12-0466]
gi|218353835|emb|CAV00196.1| conserved hypothetical protein [Escherichia coli 55989]
gi|340732939|gb|EGR62075.1| hypothetical protein HUSEC41_18943 [Escherichia coli O104:H4 str.
01-09591]
gi|340738512|gb|EGR72761.1| hypothetical protein HUSEC_19307 [Escherichia coli O104:H4 str.
LB226692]
gi|341919811|gb|EGT69421.1| rtcB [Escherichia coli O104:H4 str. C227-11]
gi|354858734|gb|EHF19183.1| protein rtcB [Escherichia coli O104:H4 str. C236-11]
gi|354863188|gb|EHF23622.1| protein rtcB [Escherichia coli O104:H4 str. C227-11]
gi|354864078|gb|EHF24508.1| protein rtcB [Escherichia coli O104:H4 str. 04-8351]
gi|354871223|gb|EHF31621.1| protein rtcB [Escherichia coli O104:H4 str. 09-7901]
gi|354877761|gb|EHF38119.1| protein rtcB [Escherichia coli O104:H4 str. 11-3677]
gi|354886662|gb|EHF46944.1| protein rtcB [Escherichia coli O104:H4 str. 11-4404]
gi|354890554|gb|EHF50793.1| protein rtcB [Escherichia coli O104:H4 str. 11-4522]
gi|354894875|gb|EHF55065.1| protein rtcB [Escherichia coli O104:H4 str. 11-4623]
gi|354906680|gb|EHF66754.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909323|gb|EHF69356.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354911308|gb|EHF71313.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354914081|gb|EHF74066.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354921759|gb|EHF81680.1| protein rtcB [Escherichia coli O104:H4 str. 11-4632 C5]
gi|406775696|gb|AFS55120.1| hypothetical protein O3M_02005 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052270|gb|AFS72321.1| hypothetical protein O3K_01960 [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067406|gb|AFS88453.1| hypothetical protein O3O_23690 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429346806|gb|EKY83585.1| protein rtcB [Escherichia coli O104:H4 str. 11-02092]
gi|429356785|gb|EKY93460.1| protein rtcB [Escherichia coli O104:H4 str. 11-02033-1]
gi|429357660|gb|EKY94333.1| protein rtcB [Escherichia coli O104:H4 str. 11-02030]
gi|429372952|gb|EKZ09501.1| protein rtcB [Escherichia coli O104:H4 str. 11-02093]
gi|429374893|gb|EKZ11432.1| protein rtcB [Escherichia coli O104:H4 str. 11-02281]
gi|429377523|gb|EKZ14044.1| protein rtcB [Escherichia coli O104:H4 str. 11-02318]
gi|429388755|gb|EKZ25180.1| protein rtcB [Escherichia coli O104:H4 str. 11-02913]
gi|429391524|gb|EKZ27928.1| protein rtcB [Escherichia coli O104:H4 str. 11-03439]
gi|429392533|gb|EKZ28934.1| protein rtcB [Escherichia coli O104:H4 str. 11-03943]
gi|429402054|gb|EKZ38347.1| protein rtcB [Escherichia coli O104:H4 str. 11-04080]
gi|429403107|gb|EKZ39392.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-9990]
gi|429406734|gb|EKZ42989.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414775|gb|EKZ50949.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418245|gb|EKZ54391.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424537|gb|EKZ60638.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4987]
gi|429428340|gb|EKZ64416.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433397|gb|EKZ69430.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-5603]
gi|429440357|gb|EKZ76335.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445255|gb|EKZ81197.1| protein rtcB [Escherichia coli O104:H4 str. Ec12-0465]
gi|429449196|gb|EKZ85098.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454847|gb|EKZ90705.1| protein rtcB [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458954|gb|EKZ94774.1| protein rtcB [Escherichia coli O104:H4 str. Ec11-9941]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|415839002|ref|ZP_11520820.1| hypothetical protein ECRN5871_2581 [Escherichia coli RN587/1]
gi|417281102|ref|ZP_12068402.1| protein RtcB [Escherichia coli 3003]
gi|422830447|ref|ZP_16878605.1| rtcB [Escherichia coli B093]
gi|425279798|ref|ZP_18671022.1| RNA-splicing ligase RtcB [Escherichia coli ARS4.2123]
gi|323188989|gb|EFZ74273.1| hypothetical protein ECRN5871_2581 [Escherichia coli RN587/1]
gi|371605141|gb|EHN93761.1| rtcB [Escherichia coli B093]
gi|386245431|gb|EII87161.1| protein RtcB [Escherichia coli 3003]
gi|408198555|gb|EKI23778.1| RNA-splicing ligase RtcB [Escherichia coli ARS4.2123]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|293453726|ref|ZP_06664145.1| rtcB [Escherichia coli B088]
gi|291321852|gb|EFE61283.1| rtcB [Escherichia coli B088]
Length = 403
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 129 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 167
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 168 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 207
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 263
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 264 PQTLAMEEI-NCHHNYVQKEQHF 285
>gi|386282913|ref|ZP_10060553.1| protein rtcB [Escherichia sp. 4_1_40B]
gi|432688690|ref|ZP_19923960.1| protein rtcB [Escherichia coli KTE161]
gi|386119914|gb|EIG68551.1| protein rtcB [Escherichia sp. 4_1_40B]
gi|431235992|gb|ELF31206.1| protein rtcB [Escherichia coli KTE161]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|428319032|ref|YP_007116914.1| protein of unknown function UPF0027 [Oscillatoria nigro-viridis PCC
7112]
gi|428242712|gb|AFZ08498.1| protein of unknown function UPF0027 [Oscillatoria nigro-viridis PCC
7112]
Length = 504
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFP 139
NH+ EIQ+VDE+ DK A G+ GQ+ MIHSGSR G + G C A+
Sbjct: 253 NHFVEIQVVDEVVDKATAYTWGVRS-GQIAFMIHSGSRNVGKYIG-GMWRDRACEAW--- 307
Query: 140 DALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQA 199
A + ++ L+ A N + YL++ A AAN+ ++NR + L R
Sbjct: 308 --------ATTLKHPKSRLFPLSVA-ANPELVSSYLQAEATAANYGFINRLLLAELLRLR 358
Query: 200 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ F D++ ++YD+ HNI E V RK + P+H G
Sbjct: 359 LRQVFG----DVEAPLVYDLPHNITLAE--------GAGWVTRKGACPAHTG 398
>gi|218707011|ref|YP_002414530.1| hypothetical protein ECUMN_3879 [Escherichia coli UMN026]
gi|293406998|ref|ZP_06650922.1| rtcB [Escherichia coli FVEC1412]
gi|298382740|ref|ZP_06992335.1| rtcB [Escherichia coli FVEC1302]
gi|300898888|ref|ZP_07117191.1| putative protein RtcB [Escherichia coli MS 198-1]
gi|331685062|ref|ZP_08385648.1| protein RtcB [Escherichia coli H299]
gi|387609112|ref|YP_006097968.1| hypothetical protein EC042_3681 [Escherichia coli 042]
gi|419933917|ref|ZP_14451064.1| hypothetical protein EC5761_09425 [Escherichia coli 576-1]
gi|422333757|ref|ZP_16414766.1| protein rtcB [Escherichia coli 4_1_47FAA]
gi|432355396|ref|ZP_19598663.1| protein rtcB [Escherichia coli KTE2]
gi|432403771|ref|ZP_19646515.1| protein rtcB [Escherichia coli KTE26]
gi|432428032|ref|ZP_19670515.1| protein rtcB [Escherichia coli KTE181]
gi|432462736|ref|ZP_19704869.1| protein rtcB [Escherichia coli KTE204]
gi|432477730|ref|ZP_19719719.1| protein rtcB [Escherichia coli KTE208]
gi|432491177|ref|ZP_19733040.1| protein rtcB [Escherichia coli KTE213]
gi|432519590|ref|ZP_19756769.1| protein rtcB [Escherichia coli KTE228]
gi|432539748|ref|ZP_19776641.1| protein rtcB [Escherichia coli KTE235]
gi|432618655|ref|ZP_19854759.1| protein rtcB [Escherichia coli KTE75]
gi|432633268|ref|ZP_19869188.1| protein rtcB [Escherichia coli KTE80]
gi|432642958|ref|ZP_19878783.1| protein rtcB [Escherichia coli KTE83]
gi|432667955|ref|ZP_19903527.1| protein rtcB [Escherichia coli KTE116]
gi|432772149|ref|ZP_20006463.1| protein rtcB [Escherichia coli KTE54]
gi|432841204|ref|ZP_20074663.1| protein rtcB [Escherichia coli KTE140]
gi|432888734|ref|ZP_20102447.1| protein rtcB [Escherichia coli KTE158]
gi|432914973|ref|ZP_20120300.1| protein rtcB [Escherichia coli KTE190]
gi|433020545|ref|ZP_20208689.1| protein rtcB [Escherichia coli KTE105]
gi|433055028|ref|ZP_20242193.1| protein rtcB [Escherichia coli KTE122]
gi|433069719|ref|ZP_20256491.1| protein rtcB [Escherichia coli KTE128]
gi|433160505|ref|ZP_20345330.1| protein rtcB [Escherichia coli KTE177]
gi|433180225|ref|ZP_20364609.1| protein rtcB [Escherichia coli KTE82]
gi|433205122|ref|ZP_20388871.1| protein rtcB [Escherichia coli KTE95]
gi|450193857|ref|ZP_21892168.1| hypothetical protein A364_17778 [Escherichia coli SEPT362]
gi|218434108|emb|CAR15025.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|284923412|emb|CBG36506.1| conserved hypothetical protein [Escherichia coli 042]
gi|291425809|gb|EFE98843.1| rtcB [Escherichia coli FVEC1412]
gi|298276576|gb|EFI18094.1| rtcB [Escherichia coli FVEC1302]
gi|300357509|gb|EFJ73379.1| putative protein RtcB [Escherichia coli MS 198-1]
gi|331077433|gb|EGI48645.1| protein RtcB [Escherichia coli H299]
gi|373245189|gb|EHP64661.1| protein rtcB [Escherichia coli 4_1_47FAA]
gi|388410081|gb|EIL70341.1| hypothetical protein EC5761_09425 [Escherichia coli 576-1]
gi|430872867|gb|ELB96447.1| protein rtcB [Escherichia coli KTE2]
gi|430923184|gb|ELC43921.1| protein rtcB [Escherichia coli KTE26]
gi|430951870|gb|ELC71078.1| protein rtcB [Escherichia coli KTE181]
gi|430985999|gb|ELD02582.1| protein rtcB [Escherichia coli KTE204]
gi|431002337|gb|ELD17850.1| protein rtcB [Escherichia coli KTE208]
gi|431018325|gb|ELD31761.1| protein rtcB [Escherichia coli KTE213]
gi|431047842|gb|ELD57827.1| protein rtcB [Escherichia coli KTE228]
gi|431067164|gb|ELD75773.1| protein rtcB [Escherichia coli KTE235]
gi|431151706|gb|ELE52719.1| protein rtcB [Escherichia coli KTE75]
gi|431167451|gb|ELE67716.1| protein rtcB [Escherichia coli KTE80]
gi|431177724|gb|ELE77638.1| protein rtcB [Escherichia coli KTE83]
gi|431197786|gb|ELE96613.1| protein rtcB [Escherichia coli KTE116]
gi|431324140|gb|ELG11596.1| protein rtcB [Escherichia coli KTE54]
gi|431386436|gb|ELG70392.1| protein rtcB [Escherichia coli KTE140]
gi|431414087|gb|ELG96836.1| protein rtcB [Escherichia coli KTE158]
gi|431436041|gb|ELH17648.1| protein rtcB [Escherichia coli KTE190]
gi|431527546|gb|ELI04261.1| protein rtcB [Escherichia coli KTE105]
gi|431567171|gb|ELI40184.1| protein rtcB [Escherichia coli KTE122]
gi|431579847|gb|ELI52418.1| protein rtcB [Escherichia coli KTE128]
gi|431674553|gb|ELJ40714.1| protein rtcB [Escherichia coli KTE177]
gi|431698379|gb|ELJ63428.1| protein rtcB [Escherichia coli KTE82]
gi|431716760|gb|ELJ80866.1| protein rtcB [Escherichia coli KTE95]
gi|449317093|gb|EMD07187.1| hypothetical protein A364_17778 [Escherichia coli SEPT362]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|417588506|ref|ZP_12239269.1| hypothetical protein ECSTECC16502_4177 [Escherichia coli
STEC_C165-02]
gi|345332579|gb|EGW65035.1| hypothetical protein ECSTECC16502_4177 [Escherichia coli
STEC_C165-02]
Length = 394
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 120 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 158
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 159 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 198
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 199 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 254
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 255 PQTLAMEEI-NCHHNYVQKEQHF 276
>gi|91212895|ref|YP_542881.1| protein RtcB [Escherichia coli UTI89]
gi|237703152|ref|ZP_04533633.1| RtcB [Escherichia sp. 3_2_53FAA]
gi|416333985|ref|ZP_11671052.1| Protein RtcB [Escherichia coli WV_060327]
gi|417284965|ref|ZP_12072256.1| protein RtcB [Escherichia coli TW07793]
gi|422360126|ref|ZP_16440763.1| putative protein RtcB [Escherichia coli MS 110-3]
gi|422372297|ref|ZP_16452662.1| putative protein RtcB [Escherichia coli MS 16-3]
gi|422379365|ref|ZP_16459561.1| putative protein RtcB [Escherichia coli MS 57-2]
gi|91074469|gb|ABE09350.1| conserved protein RtcB [Escherichia coli UTI89]
gi|226902416|gb|EEH88675.1| RtcB [Escherichia sp. 3_2_53FAA]
gi|315286079|gb|EFU45517.1| putative protein RtcB [Escherichia coli MS 110-3]
gi|315296022|gb|EFU55331.1| putative protein RtcB [Escherichia coli MS 16-3]
gi|320197382|gb|EFW71997.1| Protein RtcB [Escherichia coli WV_060327]
gi|324009399|gb|EGB78618.1| putative protein RtcB [Escherichia coli MS 57-2]
gi|386250206|gb|EII96373.1| protein RtcB [Escherichia coli TW07793]
Length = 429
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 155 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 193
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 194 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 233
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 234 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVKQ 289
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 290 PQTLAMEEI-NCHHNYVQKEQHF 311
>gi|218691696|ref|YP_002399908.1| hypothetical protein ECED1_4081 [Escherichia coli ED1a]
gi|222158116|ref|YP_002558255.1| Protein rtcB [Escherichia coli LF82]
gi|387618707|ref|YP_006121729.1| hypothetical protein NRG857_16930 [Escherichia coli O83:H1 str. NRG
857C]
gi|218429260|emb|CAR10218.2| conserved hypothetical protein [Escherichia coli ED1a]
gi|222035121|emb|CAP77866.1| Protein rtcB [Escherichia coli LF82]
gi|312947968|gb|ADR28795.1| hypothetical protein NRG857_16930 [Escherichia coli O83:H1 str. NRG
857C]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVKQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|191171490|ref|ZP_03033038.1| RtcB protein [Escherichia coli F11]
gi|300987307|ref|ZP_07178115.1| putative protein RtcB [Escherichia coli MS 200-1]
gi|422374075|ref|ZP_16454369.1| putative protein RtcB [Escherichia coli MS 60-1]
gi|190908117|gb|EDV67708.1| RtcB protein [Escherichia coli F11]
gi|300306175|gb|EFJ60695.1| putative protein RtcB [Escherichia coli MS 200-1]
gi|324014506|gb|EGB83725.1| putative protein RtcB [Escherichia coli MS 60-1]
Length = 429
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 155 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 193
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 194 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 233
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 234 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVKQ 289
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 290 PQTLAMEEI-NCHHNYVQKEQHF 311
>gi|170679877|ref|YP_001745668.1| RtcB protein [Escherichia coli SMS-3-5]
gi|215488701|ref|YP_002331132.1| hypothetical protein E2348C_3665 [Escherichia coli O127:H6 str.
E2348/69]
gi|300937280|ref|ZP_07152124.1| putative protein RtcB [Escherichia coli MS 21-1]
gi|312968267|ref|ZP_07782477.1| uncharacterized family UPF0027 family protein [Escherichia coli
2362-75]
gi|417757751|ref|ZP_12405816.1| hypothetical protein ECDEC2B_4103 [Escherichia coli DEC2B]
gi|418998813|ref|ZP_13546396.1| hypothetical protein ECDEC1A_3824 [Escherichia coli DEC1A]
gi|419009799|ref|ZP_13557217.1| hypothetical protein ECDEC1C_4129 [Escherichia coli DEC1C]
gi|419015440|ref|ZP_13562778.1| RNA-splicing ligase RtcB [Escherichia coli DEC1D]
gi|419020430|ref|ZP_13567728.1| hypothetical protein ECDEC1E_4173 [Escherichia coli DEC1E]
gi|419025895|ref|ZP_13573113.1| RNA-splicing ligase RtcB [Escherichia coli DEC2A]
gi|419031026|ref|ZP_13578173.1| hypothetical protein ECDEC2C_4086 [Escherichia coli DEC2C]
gi|419036582|ref|ZP_13583657.1| hypothetical protein ECDEC2D_4013 [Escherichia coli DEC2D]
gi|419041729|ref|ZP_13588746.1| hypothetical protein ECDEC2E_4071 [Escherichia coli DEC2E]
gi|432682134|ref|ZP_19917492.1| protein rtcB [Escherichia coli KTE143]
gi|170517595|gb|ACB15773.1| RtcB protein [Escherichia coli SMS-3-5]
gi|215266773|emb|CAS11213.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|300457682|gb|EFK21175.1| putative protein RtcB [Escherichia coli MS 21-1]
gi|312287092|gb|EFR15002.1| uncharacterized family UPF0027 family protein [Escherichia coli
2362-75]
gi|377840257|gb|EHU05332.1| hypothetical protein ECDEC1A_3824 [Escherichia coli DEC1A]
gi|377840576|gb|EHU05648.1| hypothetical protein ECDEC1C_4129 [Escherichia coli DEC1C]
gi|377853794|gb|EHU18685.1| RNA-splicing ligase RtcB [Escherichia coli DEC1D]
gi|377857215|gb|EHU22069.1| hypothetical protein ECDEC1E_4173 [Escherichia coli DEC1E]
gi|377859859|gb|EHU24687.1| RNA-splicing ligase RtcB [Escherichia coli DEC2A]
gi|377871402|gb|EHU36066.1| hypothetical protein ECDEC2B_4103 [Escherichia coli DEC2B]
gi|377873696|gb|EHU38328.1| hypothetical protein ECDEC2C_4086 [Escherichia coli DEC2C]
gi|377875404|gb|EHU40014.1| hypothetical protein ECDEC2D_4013 [Escherichia coli DEC2D]
gi|377886441|gb|EHU50922.1| hypothetical protein ECDEC2E_4071 [Escherichia coli DEC2E]
gi|431217681|gb|ELF15247.1| protein rtcB [Escherichia coli KTE143]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|170728230|ref|YP_001762256.1| release factor H-coupled RctB family protein [Shewanella woodyi
ATCC 51908]
gi|169813577|gb|ACA88161.1| release factor H-coupled RctB family protein [Shewanella woodyi
ATCC 51908]
Length = 392
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 38/179 (21%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE Q +DE+YD+ A +G+ Q+ +++HSGSRG G + K
Sbjct: 133 LGTIGGGNHFAEFQAIDEVYDQAALEYLGLNKR-QLQLLVHSGSRGLGQSILVEHISKHN 191
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+ A V QDY++ A +A +NR +
Sbjct: 192 HNGLLVEGADV------------------------GDSFQDYIRKHDEAVRWAELNRELI 227
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
F D + D++HN+ + +DG++ L HRK + PS G
Sbjct: 228 AL----RFLDSIRAKGD-----CVLDINHNLVSAQN--IDGREGWL--HRKGATPSDKG 273
>gi|110643653|ref|YP_671383.1| protein RtcB [Escherichia coli 536]
gi|432472765|ref|ZP_19714802.1| protein rtcB [Escherichia coli KTE206]
gi|432715270|ref|ZP_19950296.1| protein rtcB [Escherichia coli KTE8]
gi|433079606|ref|ZP_20266124.1| protein rtcB [Escherichia coli KTE131]
gi|110345245|gb|ABG71482.1| protein RtcB [Escherichia coli 536]
gi|430995756|gb|ELD12046.1| protein rtcB [Escherichia coli KTE206]
gi|431252491|gb|ELF46006.1| protein rtcB [Escherichia coli KTE8]
gi|431594193|gb|ELI64476.1| protein rtcB [Escherichia coli KTE131]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVKQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|606356|gb|AAA58219.1| ORF_f408 [Escherichia coli str. K-12 substr. MG1655]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTXK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 T----LPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|424817943|ref|ZP_18243094.1| hypothetical protein ECD227_3060 [Escherichia fergusonii ECD227]
gi|325498963|gb|EGC96822.1| hypothetical protein ECD227_3060 [Escherichia fergusonii ECD227]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|117625685|ref|YP_859008.1| hypothetical protein APECO1_3046 [Escherichia coli APEC O1]
gi|218560478|ref|YP_002393391.1| hypothetical protein ECS88_3809 [Escherichia coli S88]
gi|331659710|ref|ZP_08360648.1| protein RtcB [Escherichia coli TA206]
gi|386601434|ref|YP_006102940.1| RtcB protein [Escherichia coli IHE3034]
gi|386605998|ref|YP_006112298.1| hypothetical protein UM146_17160 [Escherichia coli UM146]
gi|419702243|ref|ZP_14229838.1| hypothetical protein OQA_16983 [Escherichia coli SCI-07]
gi|419912354|ref|ZP_14430809.1| hypothetical protein ECKD1_04507 [Escherichia coli KD1]
gi|422751258|ref|ZP_16805167.1| rtcB protein [Escherichia coli H252]
gi|422756930|ref|ZP_16810752.1| rtcB protein [Escherichia coli H263]
gi|422841425|ref|ZP_16889394.1| rtcB [Escherichia coli H397]
gi|425302270|ref|ZP_18692151.1| RNA-splicing ligase RtcB [Escherichia coli 07798]
gi|432359865|ref|ZP_19603078.1| protein rtcB [Escherichia coli KTE4]
gi|432364662|ref|ZP_19607817.1| protein rtcB [Escherichia coli KTE5]
gi|432467728|ref|ZP_19709806.1| protein rtcB [Escherichia coli KTE205]
gi|432555501|ref|ZP_19792219.1| protein rtcB [Escherichia coli KTE47]
gi|432575649|ref|ZP_19812120.1| protein rtcB [Escherichia coli KTE55]
gi|432584942|ref|ZP_19821333.1| protein rtcB [Escherichia coli KTE57]
gi|432589794|ref|ZP_19826146.1| protein rtcB [Escherichia coli KTE58]
gi|432734166|ref|ZP_19968990.1| protein rtcB [Escherichia coli KTE45]
gi|432756344|ref|ZP_19990888.1| protein rtcB [Escherichia coli KTE22]
gi|432761251|ref|ZP_19995741.1| protein rtcB [Escherichia coli KTE46]
gi|432780424|ref|ZP_20014644.1| protein rtcB [Escherichia coli KTE59]
gi|432789417|ref|ZP_20023544.1| protein rtcB [Escherichia coli KTE65]
gi|432822853|ref|ZP_20056541.1| protein rtcB [Escherichia coli KTE118]
gi|432824306|ref|ZP_20057976.1| protein rtcB [Escherichia coli KTE123]
gi|432900680|ref|ZP_20111059.1| protein rtcB [Escherichia coli KTE192]
gi|433006997|ref|ZP_20195420.1| protein rtcB [Escherichia coli KTE227]
gi|433009613|ref|ZP_20198025.1| protein rtcB [Escherichia coli KTE229]
gi|433030328|ref|ZP_20218177.1| protein rtcB [Escherichia coli KTE109]
gi|433074669|ref|ZP_20261309.1| protein rtcB [Escherichia coli KTE129]
gi|433122026|ref|ZP_20307684.1| protein rtcB [Escherichia coli KTE157]
gi|433155564|ref|ZP_20340495.1| protein rtcB [Escherichia coli KTE176]
gi|433165406|ref|ZP_20350135.1| protein rtcB [Escherichia coli KTE179]
gi|433170404|ref|ZP_20355023.1| protein rtcB [Escherichia coli KTE180]
gi|433185132|ref|ZP_20369368.1| protein rtcB [Escherichia coli KTE85]
gi|115514809|gb|ABJ02884.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|218367247|emb|CAR05021.1| conserved hypothetical protein [Escherichia coli S88]
gi|294494091|gb|ADE92847.1| RtcB protein [Escherichia coli IHE3034]
gi|307628482|gb|ADN72786.1| hypothetical protein UM146_17160 [Escherichia coli UM146]
gi|323950077|gb|EGB45960.1| rtcB protein [Escherichia coli H252]
gi|323954643|gb|EGB50425.1| rtcB protein [Escherichia coli H263]
gi|331052925|gb|EGI24958.1| protein RtcB [Escherichia coli TA206]
gi|371604677|gb|EHN93304.1| rtcB [Escherichia coli H397]
gi|380346532|gb|EIA34825.1| hypothetical protein OQA_16983 [Escherichia coli SCI-07]
gi|388391756|gb|EIL53201.1| hypothetical protein ECKD1_04507 [Escherichia coli KD1]
gi|408211157|gb|EKI35710.1| RNA-splicing ligase RtcB [Escherichia coli 07798]
gi|430874174|gb|ELB97739.1| protein rtcB [Escherichia coli KTE4]
gi|430883513|gb|ELC06507.1| protein rtcB [Escherichia coli KTE5]
gi|430991348|gb|ELD07752.1| protein rtcB [Escherichia coli KTE205]
gi|431081145|gb|ELD87924.1| protein rtcB [Escherichia coli KTE47]
gi|431104930|gb|ELE09294.1| protein rtcB [Escherichia coli KTE55]
gi|431114842|gb|ELE18369.1| protein rtcB [Escherichia coli KTE57]
gi|431117923|gb|ELE21147.1| protein rtcB [Escherichia coli KTE58]
gi|431272059|gb|ELF63177.1| protein rtcB [Escherichia coli KTE45]
gi|431299885|gb|ELF89451.1| protein rtcB [Escherichia coli KTE22]
gi|431306558|gb|ELF94871.1| protein rtcB [Escherichia coli KTE46]
gi|431324816|gb|ELG12232.1| protein rtcB [Escherichia coli KTE59]
gi|431335297|gb|ELG22437.1| protein rtcB [Escherichia coli KTE65]
gi|431365586|gb|ELG52091.1| protein rtcB [Escherichia coli KTE118]
gi|431378831|gb|ELG63822.1| protein rtcB [Escherichia coli KTE123]
gi|431423635|gb|ELH05761.1| protein rtcB [Escherichia coli KTE192]
gi|431510444|gb|ELH88689.1| protein rtcB [Escherichia coli KTE227]
gi|431521539|gb|ELH98784.1| protein rtcB [Escherichia coli KTE229]
gi|431540796|gb|ELI16250.1| protein rtcB [Escherichia coli KTE109]
gi|431583909|gb|ELI55897.1| protein rtcB [Escherichia coli KTE129]
gi|431639292|gb|ELJ07155.1| protein rtcB [Escherichia coli KTE157]
gi|431670995|gb|ELJ37286.1| protein rtcB [Escherichia coli KTE176]
gi|431684219|gb|ELJ49831.1| protein rtcB [Escherichia coli KTE179]
gi|431684571|gb|ELJ50177.1| protein rtcB [Escherichia coli KTE180]
gi|431702770|gb|ELJ67565.1| protein rtcB [Escherichia coli KTE85]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVKQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|300917251|ref|ZP_07133932.1| putative protein RtcB [Escherichia coli MS 115-1]
gi|300415534|gb|EFJ98844.1| putative protein RtcB [Escherichia coli MS 115-1]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|218702165|ref|YP_002409794.1| hypothetical protein ECIAI39_3901 [Escherichia coli IAI39]
gi|386626208|ref|YP_006145936.1| hypothetical protein CE10_3941 [Escherichia coli O7:K1 str. CE10]
gi|218372151|emb|CAR20013.1| conserved hypothetical protein [Escherichia coli IAI39]
gi|349739944|gb|AEQ14650.1| conserved protein [Escherichia coli O7:K1 str. CE10]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432870907|ref|ZP_20091327.1| protein rtcB [Escherichia coli KTE147]
gi|431408892|gb|ELG92074.1| protein rtcB [Escherichia coli KTE147]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WTELEVGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|386706664|ref|YP_006170511.1| hypothetical protein P12B_c3521 [Escherichia coli P12b]
gi|383104832|gb|AFG42341.1| hypothetical protein P12B_c3521 [Escherichia coli P12b]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|157162898|ref|YP_001460216.1| RtcB protein [Escherichia coli HS]
gi|170018344|ref|YP_001723298.1| hypothetical protein EcolC_0293 [Escherichia coli ATCC 8739]
gi|188493821|ref|ZP_03001091.1| RtcB protein [Escherichia coli 53638]
gi|194435567|ref|ZP_03067670.1| RtcB protein [Escherichia coli 101-1]
gi|300931044|ref|ZP_07146401.1| putative protein RtcB [Escherichia coli MS 187-1]
gi|422773455|ref|ZP_16827139.1| rtcB protein [Escherichia coli E482]
gi|422788688|ref|ZP_16841423.1| rtcB protein [Escherichia coli H489]
gi|422793469|ref|ZP_16846165.1| rtcB protein [Escherichia coli TA007]
gi|432451635|ref|ZP_19693892.1| protein rtcB [Escherichia coli KTE193]
gi|432528276|ref|ZP_19765352.1| protein rtcB [Escherichia coli KTE233]
gi|432535787|ref|ZP_19772746.1| protein rtcB [Escherichia coli KTE234]
gi|433035285|ref|ZP_20222982.1| protein rtcB [Escherichia coli KTE112]
gi|442596741|ref|ZP_21014545.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|157068578|gb|ABV07833.1| RtcB protein [Escherichia coli HS]
gi|169753272|gb|ACA75971.1| protein of unknown function UPF0027 [Escherichia coli ATCC 8739]
gi|188489020|gb|EDU64123.1| RtcB protein [Escherichia coli 53638]
gi|194425110|gb|EDX41094.1| RtcB protein [Escherichia coli 101-1]
gi|300461149|gb|EFK24642.1| putative protein RtcB [Escherichia coli MS 187-1]
gi|323939360|gb|EGB35571.1| rtcB protein [Escherichia coli E482]
gi|323959580|gb|EGB55232.1| rtcB protein [Escherichia coli H489]
gi|323970018|gb|EGB65293.1| rtcB protein [Escherichia coli TA007]
gi|430978064|gb|ELC94887.1| protein rtcB [Escherichia coli KTE193]
gi|431058028|gb|ELD67438.1| protein rtcB [Escherichia coli KTE234]
gi|431060899|gb|ELD70221.1| protein rtcB [Escherichia coli KTE233]
gi|431547339|gb|ELI21719.1| protein rtcB [Escherichia coli KTE112]
gi|441654849|emb|CCQ00458.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432854820|ref|ZP_20083091.1| protein rtcB [Escherichia coli KTE144]
gi|431397902|gb|ELG81334.1| protein rtcB [Escherichia coli KTE144]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|218550678|ref|YP_002384469.1| hypothetical protein EFER_3389 [Escherichia fergusonii ATCC 35469]
gi|422807338|ref|ZP_16855768.1| rtcB [Escherichia fergusonii B253]
gi|218358219|emb|CAQ90866.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
gi|324111733|gb|EGC05713.1| rtcB [Escherichia fergusonii B253]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFLEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|416899796|ref|ZP_11929202.1| hypothetical protein ECSTEC7V_4043 [Escherichia coli STEC_7v]
gi|417117149|ref|ZP_11968010.1| protein RtcB [Escherichia coli 1.2741]
gi|422784056|ref|ZP_16836839.1| rtcB protein [Escherichia coli TW10509]
gi|422801343|ref|ZP_16849839.1| rtcB protein [Escherichia coli M863]
gi|323966233|gb|EGB61669.1| rtcB protein [Escherichia coli M863]
gi|323974776|gb|EGB69888.1| rtcB protein [Escherichia coli TW10509]
gi|327251056|gb|EGE62749.1| hypothetical protein ECSTEC7V_4043 [Escherichia coli STEC_7v]
gi|386139693|gb|EIG80848.1| protein RtcB [Escherichia coli 1.2741]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|312972316|ref|ZP_07786490.1| uncharacterized family UPF0027 family protein [Escherichia coli
1827-70]
gi|310334693|gb|EFQ00898.1| uncharacterized family UPF0027 family protein [Escherichia coli
1827-70]
Length = 408
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|419004126|ref|ZP_13551638.1| hypothetical protein ECDEC1B_4055 [Escherichia coli DEC1B]
gi|377843132|gb|EHU08173.1| hypothetical protein ECDEC1B_4055 [Escherichia coli DEC1B]
Length = 329
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 55 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 93
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 94 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 133
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 134 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 189
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 190 PQTLAMEEI-NCHHNYVQKEQHF 211
>gi|425290570|ref|ZP_18681389.1| RNA-splicing ligase RtcB [Escherichia coli 3006]
gi|408210104|gb|EKI34677.1| RNA-splicing ligase RtcB [Escherichia coli 3006]
Length = 408
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVAALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|160941636|ref|ZP_02088965.1| hypothetical protein CLOBOL_06534 [Clostridium bolteae ATCC
BAA-613]
gi|158435444|gb|EDP13211.1| hypothetical protein CLOBOL_06534 [Clostridium bolteae ATCC
BAA-613]
Length = 411
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 35/177 (19%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q +D G + VMIHSGSR FG V C
Sbjct: 155 GYYQIGTLGGGNHFIELQ---------------EDDDGYLAVMIHSGSRHFGKSV----C 195
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ F Q+ + K + ++ +LA ++++EG+ YL M + +FA N
Sbjct: 196 D-------YFHYKARQLNQ--KWFSAVPDEYRLAFLPVDTREGKQYLNWMQLSMDFAKEN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRK 243
R M L +A +++ +L + +D++ HN A E H K + VHRK
Sbjct: 247 REKM-MLAVKAILEKWIGKYTELSLEFSHDINCHHNYASFENHY----GKDVWVHRK 298
>gi|16766807|ref|NP_462422.1| hypothetical protein STM3519 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|374978156|ref|ZP_09719499.1| Protein RtcB [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378986114|ref|YP_005249270.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|16422079|gb|AAL22381.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|312914543|dbj|BAJ38517.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226570|gb|EFX51620.1| Protein RtcB [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 405
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGNPPANVNEKWAQLEAGYQWL-------------TQKYPRFLNTNNYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPSALDMDEI-NCHHNYVQKEQHF 287
>gi|419177242|ref|ZP_13721052.1| hypothetical protein ECDEC7B_3727 [Escherichia coli DEC7B]
gi|378029909|gb|EHV92514.1| hypothetical protein ECDEC7B_3727 [Escherichia coli DEC7B]
Length = 408
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIE-TNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +E R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLEMLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|149916894|ref|ZP_01905395.1| hypothetical protein PPSIR1_21639 [Plesiocystis pacifica SIR-1]
gi|149822172|gb|EDM81563.1| hypothetical protein PPSIR1_21639 [Plesiocystis pacifica SIR-1]
Length = 411
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 80/196 (40%), Gaps = 47/196 (23%)
Query: 58 PSKVSMRAKKRGLP-QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 116
P + + A+ R LGT+G GNH+AE+ V+ I D AA +G++ G V ++ HSGS
Sbjct: 153 PEALRLDARGRCFATSLGTIGGGNHFAELGAVESITDPAAAEALGLQRRGHV-ILAHSGS 211
Query: 117 RGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLK 176
RG G +A P LV ET D+ YL
Sbjct: 212 RGLGRALAL----------RWGPGGLV-----------ETEDQ------------ATYLA 238
Query: 177 SMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQK 236
+A A FA NR LC + + + + +D+ HN E G+Q
Sbjct: 239 ELAGAVRFAIANR---VLLCWRMLSARGAAKSSRI--RGTFDLVHNFVSDE-----GEQG 288
Query: 237 TLLVHRKVSEPSHPGV 252
VHRK P+ GV
Sbjct: 289 --WVHRKGCAPAEQGV 302
>gi|194430974|ref|ZP_03063267.1| RtcB protein [Shigella dysenteriae 1012]
gi|417674376|ref|ZP_12323809.1| hypothetical protein SD15574_4138 [Shigella dysenteriae 155-74]
gi|194420429|gb|EDX36505.1| RtcB protein [Shigella dysenteriae 1012]
gi|332085660|gb|EGI90824.1| hypothetical protein SD15574_4138 [Shigella dysenteriae 155-74]
Length = 408
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A F+ +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFSSLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|419077562|ref|ZP_13623064.1| hypothetical protein ECDEC3F_4588 [Escherichia coli DEC3F]
gi|377918435|gb|EHU82483.1| hypothetical protein ECDEC3F_4588 [Escherichia coli DEC3F]
Length = 371
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 51/201 (25%)
Query: 34 LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 137 LEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI-------- 172
Query: 94 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN 153
+++ QV +M+HSGSRG G+ + T + + + ++
Sbjct: 173 -------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEMQET 210
Query: 154 IET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTTPD 209
+ET R LA ++ DYLK++A A FA +NR M Q+ ++ P
Sbjct: 211 LETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQPQ 270
Query: 210 DLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 271 TLAMEEI-NCHHNYVQKEQHF 290
>gi|15803928|ref|NP_289964.1| hypothetical protein Z4779 [Escherichia coli O157:H7 str. EDL933]
gi|15833518|ref|NP_312291.1| hypothetical protein ECs4264 [Escherichia coli O157:H7 str. Sakai]
gi|168747098|ref|ZP_02772120.1| RtcB protein [Escherichia coli O157:H7 str. EC4113]
gi|168753177|ref|ZP_02778184.1| RtcB protein [Escherichia coli O157:H7 str. EC4401]
gi|168759449|ref|ZP_02784456.1| RtcB protein [Escherichia coli O157:H7 str. EC4501]
gi|168765772|ref|ZP_02790779.1| RtcB protein [Escherichia coli O157:H7 str. EC4486]
gi|168772683|ref|ZP_02797690.1| RtcB protein [Escherichia coli O157:H7 str. EC4196]
gi|168779508|ref|ZP_02804515.1| RtcB protein [Escherichia coli O157:H7 str. EC4076]
gi|168797195|ref|ZP_02822202.1| RtcB protein [Escherichia coli O157:H7 str. EC508]
gi|195934911|ref|ZP_03080293.1| hypothetical protein EscherichcoliO157_00375 [Escherichia coli
O157:H7 str. EC4024]
gi|208808378|ref|ZP_03250715.1| RtcB protein [Escherichia coli O157:H7 str. EC4206]
gi|208812354|ref|ZP_03253683.1| RtcB protein [Escherichia coli O157:H7 str. EC4045]
gi|208820274|ref|ZP_03260594.1| RtcB protein [Escherichia coli O157:H7 str. EC4042]
gi|209397766|ref|YP_002272858.1| RtcB protein [Escherichia coli O157:H7 str. EC4115]
gi|217324842|ref|ZP_03440926.1| RtcB protein [Escherichia coli O157:H7 str. TW14588]
gi|254795338|ref|YP_003080175.1| hypothetical protein ECSP_4373 [Escherichia coli O157:H7 str.
TW14359]
gi|387884571|ref|YP_006314873.1| hypothetical protein CDCO157_4005 [Escherichia coli Xuzhou21]
gi|416315953|ref|ZP_11659766.1| Protein RtcB [Escherichia coli O157:H7 str. 1044]
gi|416320210|ref|ZP_11662762.1| Protein RtcB [Escherichia coli O157:H7 str. EC1212]
gi|416326544|ref|ZP_11666753.1| Protein RtcB [Escherichia coli O157:H7 str. 1125]
gi|416778047|ref|ZP_11875619.1| hypothetical protein ECO5101_01760 [Escherichia coli O157:H7 str.
G5101]
gi|419047387|ref|ZP_13594319.1| hypothetical protein ECDEC3A_4380 [Escherichia coli DEC3A]
gi|419053172|ref|ZP_13600039.1| hypothetical protein ECDEC3B_4492 [Escherichia coli DEC3B]
gi|419059124|ref|ZP_13605925.1| hypothetical protein ECDEC3C_4732 [Escherichia coli DEC3C]
gi|419064671|ref|ZP_13611391.1| hypothetical protein ECDEC3D_4499 [Escherichia coli DEC3D]
gi|419071599|ref|ZP_13617208.1| hypothetical protein ECDEC3E_4704 [Escherichia coli DEC3E]
gi|419082603|ref|ZP_13628048.1| hypothetical protein ECDEC4A_4239 [Escherichia coli DEC4A]
gi|419088475|ref|ZP_13633826.1| hypothetical protein ECDEC4B_4429 [Escherichia coli DEC4B]
gi|419106020|ref|ZP_13651143.1| hypothetical protein ECDEC4E_4363 [Escherichia coli DEC4E]
gi|419111401|ref|ZP_13656452.1| hypothetical protein ECDEC4F_4242 [Escherichia coli DEC4F]
gi|420271954|ref|ZP_14774305.1| RNA-splicing ligase RtcB [Escherichia coli PA22]
gi|420288911|ref|ZP_14791093.1| RNA-splicing ligase RtcB [Escherichia coli TW10246]
gi|420294550|ref|ZP_14796661.1| RNA-splicing ligase RtcB [Escherichia coli TW11039]
gi|420300403|ref|ZP_14802446.1| RNA-splicing ligase RtcB [Escherichia coli TW09109]
gi|420306296|ref|ZP_14808284.1| RNA-splicing ligase RtcB [Escherichia coli TW10119]
gi|420311765|ref|ZP_14813693.1| RNA-splicing ligase RtcB [Escherichia coli EC1738]
gi|420317205|ref|ZP_14819077.1| RNA-splicing ligase RtcB [Escherichia coli EC1734]
gi|421814350|ref|ZP_16250054.1| RNA-splicing ligase RtcB [Escherichia coli 8.0416]
gi|421820183|ref|ZP_16255669.1| RNA-splicing ligase RtcB [Escherichia coli 10.0821]
gi|421832991|ref|ZP_16268271.1| RNA-splicing ligase RtcB [Escherichia coli PA7]
gi|423727367|ref|ZP_17701272.1| RNA-splicing ligase RtcB [Escherichia coli PA31]
gi|424079565|ref|ZP_17816529.1| RNA-splicing ligase RtcB [Escherichia coli FDA505]
gi|424086023|ref|ZP_17822506.1| RNA-splicing ligase RtcB [Escherichia coli FDA517]
gi|424099095|ref|ZP_17834367.1| RNA-splicing ligase RtcB [Escherichia coli FRIK1985]
gi|424111953|ref|ZP_17846179.1| RNA-splicing ligase RtcB [Escherichia coli 93-001]
gi|424117894|ref|ZP_17851723.1| RNA-splicing ligase RtcB [Escherichia coli PA3]
gi|424124080|ref|ZP_17857383.1| RNA-splicing ligase RtcB [Escherichia coli PA5]
gi|424130229|ref|ZP_17863128.1| RNA-splicing ligase RtcB [Escherichia coli PA9]
gi|424136551|ref|ZP_17868995.1| RNA-splicing ligase RtcB [Escherichia coli PA10]
gi|424143104|ref|ZP_17874967.1| RNA-splicing ligase RtcB [Escherichia coli PA14]
gi|424149506|ref|ZP_17880873.1| RNA-splicing ligase RtcB [Escherichia coli PA15]
gi|424155354|ref|ZP_17886282.1| RNA-splicing ligase RtcB [Escherichia coli PA24]
gi|424255341|ref|ZP_17891830.1| RNA-splicing ligase RtcB [Escherichia coli PA25]
gi|424333829|ref|ZP_17897738.1| RNA-splicing ligase RtcB [Escherichia coli PA28]
gi|424451792|ref|ZP_17903457.1| RNA-splicing ligase RtcB [Escherichia coli PA32]
gi|424457980|ref|ZP_17909086.1| RNA-splicing ligase RtcB [Escherichia coli PA33]
gi|424464445|ref|ZP_17914811.1| RNA-splicing ligase RtcB [Escherichia coli PA39]
gi|424477246|ref|ZP_17926556.1| RNA-splicing ligase RtcB [Escherichia coli PA42]
gi|424483010|ref|ZP_17931982.1| RNA-splicing ligase RtcB [Escherichia coli TW07945]
gi|424489192|ref|ZP_17937734.1| RNA-splicing ligase RtcB [Escherichia coli TW09098]
gi|424502542|ref|ZP_17949424.1| RNA-splicing ligase RtcB [Escherichia coli EC4203]
gi|424508796|ref|ZP_17955173.1| RNA-splicing ligase RtcB [Escherichia coli EC4196]
gi|424516150|ref|ZP_17960777.1| RNA-splicing ligase RtcB [Escherichia coli TW14313]
gi|424522346|ref|ZP_17966454.1| RNA-splicing ligase RtcB [Escherichia coli TW14301]
gi|424528224|ref|ZP_17971932.1| RNA-splicing ligase RtcB [Escherichia coli EC4421]
gi|424534371|ref|ZP_17977711.1| RNA-splicing ligase RtcB [Escherichia coli EC4422]
gi|424540424|ref|ZP_17983360.1| RNA-splicing ligase RtcB [Escherichia coli EC4013]
gi|424546556|ref|ZP_17988919.1| RNA-splicing ligase RtcB [Escherichia coli EC4402]
gi|424552778|ref|ZP_17994614.1| RNA-splicing ligase RtcB [Escherichia coli EC4439]
gi|424558964|ref|ZP_18000366.1| RNA-splicing ligase RtcB [Escherichia coli EC4436]
gi|424565302|ref|ZP_18006298.1| RNA-splicing ligase RtcB [Escherichia coli EC4437]
gi|424571433|ref|ZP_18011973.1| RNA-splicing ligase RtcB [Escherichia coli EC4448]
gi|424577587|ref|ZP_18017632.1| RNA-splicing ligase RtcB [Escherichia coli EC1845]
gi|424583406|ref|ZP_18023045.1| RNA-splicing ligase RtcB [Escherichia coli EC1863]
gi|425100080|ref|ZP_18502804.1| RNA-splicing ligase RtcB [Escherichia coli 3.4870]
gi|425106178|ref|ZP_18508487.1| RNA-splicing ligase RtcB [Escherichia coli 5.2239]
gi|425112188|ref|ZP_18514101.1| RNA-splicing ligase RtcB [Escherichia coli 6.0172]
gi|425128113|ref|ZP_18529273.1| RNA-splicing ligase RtcB [Escherichia coli 8.0586]
gi|425133856|ref|ZP_18534698.1| RNA-splicing ligase RtcB [Escherichia coli 8.2524]
gi|425140432|ref|ZP_18540805.1| RNA-splicing ligase RtcB [Escherichia coli 10.0833]
gi|425146138|ref|ZP_18546123.1| RNA-splicing ligase RtcB [Escherichia coli 10.0869]
gi|425152259|ref|ZP_18551865.1| RNA-splicing ligase RtcB [Escherichia coli 88.0221]
gi|425158134|ref|ZP_18557390.1| RNA-splicing ligase RtcB [Escherichia coli PA34]
gi|425164482|ref|ZP_18563361.1| RNA-splicing ligase RtcB [Escherichia coli FDA506]
gi|425170227|ref|ZP_18568692.1| RNA-splicing ligase RtcB [Escherichia coli FDA507]
gi|425176286|ref|ZP_18574397.1| RNA-splicing ligase RtcB [Escherichia coli FDA504]
gi|425188596|ref|ZP_18585860.1| RNA-splicing ligase RtcB [Escherichia coli FRIK1997]
gi|425201840|ref|ZP_18598039.1| RNA-splicing ligase RtcB [Escherichia coli NE037]
gi|425213978|ref|ZP_18609370.1| RNA-splicing ligase RtcB [Escherichia coli PA4]
gi|425220100|ref|ZP_18615054.1| RNA-splicing ligase RtcB [Escherichia coli PA23]
gi|425226649|ref|ZP_18621107.1| RNA-splicing ligase RtcB [Escherichia coli PA49]
gi|425232903|ref|ZP_18626935.1| RNA-splicing ligase RtcB [Escherichia coli PA45]
gi|425238828|ref|ZP_18632539.1| RNA-splicing ligase RtcB [Escherichia coli TT12B]
gi|425257039|ref|ZP_18649543.1| RNA-splicing ligase RtcB [Escherichia coli CB7326]
gi|425263292|ref|ZP_18655285.1| RNA-splicing ligase RtcB [Escherichia coli EC96038]
gi|425296744|ref|ZP_18686904.1| RNA-splicing ligase RtcB [Escherichia coli PA38]
gi|425313436|ref|ZP_18702607.1| RNA-splicing ligase RtcB [Escherichia coli EC1735]
gi|425319413|ref|ZP_18708193.1| RNA-splicing ligase RtcB [Escherichia coli EC1736]
gi|425325515|ref|ZP_18713862.1| RNA-splicing ligase RtcB [Escherichia coli EC1737]
gi|425331880|ref|ZP_18719708.1| RNA-splicing ligase RtcB [Escherichia coli EC1846]
gi|425338057|ref|ZP_18725405.1| RNA-splicing ligase RtcB [Escherichia coli EC1847]
gi|425344370|ref|ZP_18731252.1| RNA-splicing ligase RtcB [Escherichia coli EC1848]
gi|425350170|ref|ZP_18736629.1| RNA-splicing ligase RtcB [Escherichia coli EC1849]
gi|425356478|ref|ZP_18742537.1| RNA-splicing ligase RtcB [Escherichia coli EC1850]
gi|425362440|ref|ZP_18748078.1| RNA-splicing ligase RtcB [Escherichia coli EC1856]
gi|425368655|ref|ZP_18753770.1| RNA-splicing ligase RtcB [Escherichia coli EC1862]
gi|425374973|ref|ZP_18759606.1| RNA-splicing ligase RtcB [Escherichia coli EC1864]
gi|425387860|ref|ZP_18771411.1| RNA-splicing ligase RtcB [Escherichia coli EC1866]
gi|425394513|ref|ZP_18777614.1| RNA-splicing ligase RtcB [Escherichia coli EC1868]
gi|425400651|ref|ZP_18783348.1| RNA-splicing ligase RtcB [Escherichia coli EC1869]
gi|425406741|ref|ZP_18788955.1| RNA-splicing ligase RtcB [Escherichia coli EC1870]
gi|425413125|ref|ZP_18794880.1| RNA-splicing ligase RtcB [Escherichia coli NE098]
gi|425419437|ref|ZP_18800699.1| RNA-splicing ligase RtcB [Escherichia coli FRIK523]
gi|425430714|ref|ZP_18811315.1| RNA-splicing ligase RtcB [Escherichia coli 0.1304]
gi|428955218|ref|ZP_19027005.1| RNA-splicing ligase RtcB [Escherichia coli 88.1042]
gi|428961172|ref|ZP_19032460.1| RNA-splicing ligase RtcB [Escherichia coli 89.0511]
gi|428967826|ref|ZP_19038530.1| RNA-splicing ligase RtcB [Escherichia coli 90.0091]
gi|428980078|ref|ZP_19049886.1| RNA-splicing ligase RtcB [Escherichia coli 90.2281]
gi|428985863|ref|ZP_19055247.1| RNA-splicing ligase RtcB [Escherichia coli 93.0055]
gi|428991937|ref|ZP_19060917.1| RNA-splicing ligase RtcB [Escherichia coli 93.0056]
gi|428997826|ref|ZP_19066412.1| RNA-splicing ligase RtcB [Escherichia coli 94.0618]
gi|429010160|ref|ZP_19077608.1| RNA-splicing ligase RtcB [Escherichia coli 95.1288]
gi|429016714|ref|ZP_19083588.1| RNA-splicing ligase RtcB [Escherichia coli 95.0943]
gi|429022584|ref|ZP_19089097.1| RNA-splicing ligase RtcB [Escherichia coli 96.0428]
gi|429028618|ref|ZP_19094603.1| RNA-splicing ligase RtcB [Escherichia coli 96.0427]
gi|429040874|ref|ZP_19105967.1| RNA-splicing ligase RtcB [Escherichia coli 96.0932]
gi|429046650|ref|ZP_19111355.1| RNA-splicing ligase RtcB [Escherichia coli 96.0107]
gi|429052094|ref|ZP_19116655.1| RNA-splicing ligase RtcB [Escherichia coli 97.0003]
gi|429057600|ref|ZP_19121875.1| RNA-splicing ligase RtcB [Escherichia coli 97.1742]
gi|429063100|ref|ZP_19127080.1| RNA-splicing ligase RtcB [Escherichia coli 97.0007]
gi|429075224|ref|ZP_19138470.1| RNA-splicing ligase RtcB [Escherichia coli 99.0678]
gi|429080434|ref|ZP_19143563.1| RNA-splicing ligase RtcB [Escherichia coli 99.0713]
gi|429828518|ref|ZP_19359531.1| RNA-splicing ligase RtcB [Escherichia coli 96.0109]
gi|429834953|ref|ZP_19365248.1| RNA-splicing ligase RtcB [Escherichia coli 97.0010]
gi|444927032|ref|ZP_21246301.1| RNA-splicing ligase RtcB [Escherichia coli 09BKT078844]
gi|444932669|ref|ZP_21251688.1| RNA-splicing ligase RtcB [Escherichia coli 99.0814]
gi|444938107|ref|ZP_21256860.1| RNA-splicing ligase RtcB [Escherichia coli 99.0815]
gi|444943719|ref|ZP_21262218.1| RNA-splicing ligase RtcB [Escherichia coli 99.0816]
gi|444949178|ref|ZP_21267476.1| RNA-splicing ligase RtcB [Escherichia coli 99.0839]
gi|444954858|ref|ZP_21272932.1| RNA-splicing ligase RtcB [Escherichia coli 99.0848]
gi|444965453|ref|ZP_21283027.1| RNA-splicing ligase RtcB [Escherichia coli 99.1775]
gi|444971456|ref|ZP_21288801.1| RNA-splicing ligase RtcB [Escherichia coli 99.1793]
gi|444976750|ref|ZP_21293846.1| RNA-splicing ligase RtcB [Escherichia coli 99.1805]
gi|444987630|ref|ZP_21304401.1| RNA-splicing ligase RtcB [Escherichia coli PA11]
gi|444992847|ref|ZP_21309484.1| RNA-splicing ligase RtcB [Escherichia coli PA19]
gi|444998083|ref|ZP_21314577.1| RNA-splicing ligase RtcB [Escherichia coli PA13]
gi|445003715|ref|ZP_21320098.1| RNA-splicing ligase RtcB [Escherichia coli PA2]
gi|445009087|ref|ZP_21325321.1| RNA-splicing ligase RtcB [Escherichia coli PA47]
gi|445014218|ref|ZP_21330317.1| RNA-splicing ligase RtcB [Escherichia coli PA48]
gi|445020129|ref|ZP_21336089.1| RNA-splicing ligase RtcB [Escherichia coli PA8]
gi|445025502|ref|ZP_21341319.1| RNA-splicing ligase RtcB [Escherichia coli 7.1982]
gi|445030960|ref|ZP_21346623.1| RNA-splicing ligase RtcB [Escherichia coli 99.1781]
gi|445036360|ref|ZP_21351882.1| RNA-splicing ligase RtcB [Escherichia coli 99.1762]
gi|445041980|ref|ZP_21357346.1| RNA-splicing ligase RtcB [Escherichia coli PA35]
gi|445047250|ref|ZP_21362493.1| RNA-splicing ligase RtcB [Escherichia coli 3.4880]
gi|445052784|ref|ZP_21367803.1| RNA-splicing ligase RtcB [Escherichia coli 95.0083]
gi|445060787|ref|ZP_21373306.1| RNA-splicing ligase RtcB [Escherichia coli 99.0670]
gi|452968611|ref|ZP_21966838.1| RNA-splicing ligase [Escherichia coli O157:H7 str. EC4009]
gi|12518057|gb|AAG58525.1|AE005564_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363738|dbj|BAB37687.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187771594|gb|EDU35438.1| RtcB protein [Escherichia coli O157:H7 str. EC4196]
gi|188018300|gb|EDU56422.1| RtcB protein [Escherichia coli O157:H7 str. EC4113]
gi|189002294|gb|EDU71280.1| RtcB protein [Escherichia coli O157:H7 str. EC4076]
gi|189358857|gb|EDU77276.1| RtcB protein [Escherichia coli O157:H7 str. EC4401]
gi|189364480|gb|EDU82899.1| RtcB protein [Escherichia coli O157:H7 str. EC4486]
gi|189369738|gb|EDU88154.1| RtcB protein [Escherichia coli O157:H7 str. EC4501]
gi|189380049|gb|EDU98465.1| RtcB protein [Escherichia coli O157:H7 str. EC508]
gi|208728179|gb|EDZ77780.1| RtcB protein [Escherichia coli O157:H7 str. EC4206]
gi|208733631|gb|EDZ82318.1| RtcB protein [Escherichia coli O157:H7 str. EC4045]
gi|208740397|gb|EDZ88079.1| RtcB protein [Escherichia coli O157:H7 str. EC4042]
gi|209159166|gb|ACI36599.1| RtcB protein [Escherichia coli O157:H7 str. EC4115]
gi|209756370|gb|ACI76497.1| hypothetical protein ECs4264 [Escherichia coli]
gi|209756372|gb|ACI76498.1| hypothetical protein ECs4264 [Escherichia coli]
gi|209756376|gb|ACI76500.1| hypothetical protein ECs4264 [Escherichia coli]
gi|217321063|gb|EEC29487.1| RtcB protein [Escherichia coli O157:H7 str. TW14588]
gi|254594738|gb|ACT74099.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
gi|320191566|gb|EFW66216.1| Protein RtcB [Escherichia coli O157:H7 str. EC1212]
gi|320639704|gb|EFX09298.1| hypothetical protein ECO5101_01760 [Escherichia coli O157:H7 str.
G5101]
gi|326337614|gb|EGD61449.1| Protein RtcB [Escherichia coli O157:H7 str. 1044]
gi|326344635|gb|EGD68384.1| Protein RtcB [Escherichia coli O157:H7 str. 1125]
gi|377890095|gb|EHU54553.1| hypothetical protein ECDEC3A_4380 [Escherichia coli DEC3A]
gi|377892019|gb|EHU56471.1| hypothetical protein ECDEC3B_4492 [Escherichia coli DEC3B]
gi|377903053|gb|EHU67351.1| hypothetical protein ECDEC3C_4732 [Escherichia coli DEC3C]
gi|377907169|gb|EHU71405.1| hypothetical protein ECDEC3D_4499 [Escherichia coli DEC3D]
gi|377908676|gb|EHU72887.1| hypothetical protein ECDEC3E_4704 [Escherichia coli DEC3E]
gi|377924041|gb|EHU87997.1| hypothetical protein ECDEC4A_4239 [Escherichia coli DEC4A]
gi|377927537|gb|EHU91452.1| hypothetical protein ECDEC4B_4429 [Escherichia coli DEC4B]
gi|377945056|gb|EHV08754.1| hypothetical protein ECDEC4E_4363 [Escherichia coli DEC4E]
gi|377954424|gb|EHV17983.1| hypothetical protein ECDEC4F_4242 [Escherichia coli DEC4F]
gi|386798029|gb|AFJ31063.1| hypothetical protein CDCO157_4005 [Escherichia coli Xuzhou21]
gi|390640097|gb|EIN19562.1| RNA-splicing ligase RtcB [Escherichia coli FDA517]
gi|390640428|gb|EIN19887.1| RNA-splicing ligase RtcB [Escherichia coli FDA505]
gi|390657785|gb|EIN35596.1| RNA-splicing ligase RtcB [Escherichia coli FRIK1985]
gi|390657977|gb|EIN35784.1| RNA-splicing ligase RtcB [Escherichia coli 93-001]
gi|390675039|gb|EIN51203.1| RNA-splicing ligase RtcB [Escherichia coli PA3]
gi|390678511|gb|EIN54473.1| RNA-splicing ligase RtcB [Escherichia coli PA5]
gi|390681857|gb|EIN57641.1| RNA-splicing ligase RtcB [Escherichia coli PA9]
gi|390693509|gb|EIN68142.1| RNA-splicing ligase RtcB [Escherichia coli PA10]
gi|390697943|gb|EIN72340.1| RNA-splicing ligase RtcB [Escherichia coli PA14]
gi|390698523|gb|EIN72902.1| RNA-splicing ligase RtcB [Escherichia coli PA15]
gi|390712412|gb|EIN85369.1| RNA-splicing ligase RtcB [Escherichia coli PA22]
gi|390719191|gb|EIN91925.1| RNA-splicing ligase RtcB [Escherichia coli PA25]
gi|390720843|gb|EIN93549.1| RNA-splicing ligase RtcB [Escherichia coli PA24]
gi|390725009|gb|EIN97529.1| RNA-splicing ligase RtcB [Escherichia coli PA28]
gi|390738744|gb|EIO09948.1| RNA-splicing ligase RtcB [Escherichia coli PA31]
gi|390739512|gb|EIO10689.1| RNA-splicing ligase RtcB [Escherichia coli PA32]
gi|390742694|gb|EIO13690.1| RNA-splicing ligase RtcB [Escherichia coli PA33]
gi|390762949|gb|EIO32202.1| RNA-splicing ligase RtcB [Escherichia coli PA39]
gi|390766263|gb|EIO35396.1| RNA-splicing ligase RtcB [Escherichia coli PA42]
gi|390786945|gb|EIO54443.1| RNA-splicing ligase RtcB [Escherichia coli TW07945]
gi|390787863|gb|EIO55336.1| RNA-splicing ligase RtcB [Escherichia coli TW10246]
gi|390793878|gb|EIO61205.1| RNA-splicing ligase RtcB [Escherichia coli TW11039]
gi|390802144|gb|EIO69193.1| RNA-splicing ligase RtcB [Escherichia coli TW09098]
gi|390804774|gb|EIO71722.1| RNA-splicing ligase RtcB [Escherichia coli TW09109]
gi|390814011|gb|EIO80591.1| RNA-splicing ligase RtcB [Escherichia coli TW10119]
gi|390823558|gb|EIO89607.1| RNA-splicing ligase RtcB [Escherichia coli EC4203]
gi|390828481|gb|EIO94147.1| RNA-splicing ligase RtcB [Escherichia coli EC4196]
gi|390842736|gb|EIP06572.1| RNA-splicing ligase RtcB [Escherichia coli TW14313]
gi|390843918|gb|EIP07693.1| RNA-splicing ligase RtcB [Escherichia coli TW14301]
gi|390848454|gb|EIP11924.1| RNA-splicing ligase RtcB [Escherichia coli EC4421]
gi|390858892|gb|EIP21260.1| RNA-splicing ligase RtcB [Escherichia coli EC4422]
gi|390863273|gb|EIP25414.1| RNA-splicing ligase RtcB [Escherichia coli EC4013]
gi|390867878|gb|EIP29650.1| RNA-splicing ligase RtcB [Escherichia coli EC4402]
gi|390876051|gb|EIP37046.1| RNA-splicing ligase RtcB [Escherichia coli EC4439]
gi|390881510|gb|EIP42100.1| RNA-splicing ligase RtcB [Escherichia coli EC4436]
gi|390891218|gb|EIP50855.1| RNA-splicing ligase RtcB [Escherichia coli EC4437]
gi|390893419|gb|EIP52981.1| RNA-splicing ligase RtcB [Escherichia coli EC4448]
gi|390898318|gb|EIP57591.1| RNA-splicing ligase RtcB [Escherichia coli EC1738]
gi|390906416|gb|EIP65307.1| RNA-splicing ligase RtcB [Escherichia coli EC1734]
gi|390916571|gb|EIP75023.1| RNA-splicing ligase RtcB [Escherichia coli EC1863]
gi|390917498|gb|EIP75921.1| RNA-splicing ligase RtcB [Escherichia coli EC1845]
gi|408062247|gb|EKG96753.1| RNA-splicing ligase RtcB [Escherichia coli PA7]
gi|408067360|gb|EKH01802.1| RNA-splicing ligase RtcB [Escherichia coli PA34]
gi|408076867|gb|EKH11081.1| RNA-splicing ligase RtcB [Escherichia coli FDA506]
gi|408080813|gb|EKH14862.1| RNA-splicing ligase RtcB [Escherichia coli FDA507]
gi|408089066|gb|EKH22398.1| RNA-splicing ligase RtcB [Escherichia coli FDA504]
gi|408101580|gb|EKH34013.1| RNA-splicing ligase RtcB [Escherichia coli FRIK1997]
gi|408113007|gb|EKH44614.1| RNA-splicing ligase RtcB [Escherichia coli NE037]
gi|408125634|gb|EKH56239.1| RNA-splicing ligase RtcB [Escherichia coli PA4]
gi|408135312|gb|EKH65104.1| RNA-splicing ligase RtcB [Escherichia coli PA23]
gi|408138060|gb|EKH67746.1| RNA-splicing ligase RtcB [Escherichia coli PA49]
gi|408144583|gb|EKH73813.1| RNA-splicing ligase RtcB [Escherichia coli PA45]
gi|408152884|gb|EKH81304.1| RNA-splicing ligase RtcB [Escherichia coli TT12B]
gi|408171343|gb|EKH98470.1| RNA-splicing ligase RtcB [Escherichia coli CB7326]
gi|408178036|gb|EKI04779.1| RNA-splicing ligase RtcB [Escherichia coli EC96038]
gi|408214584|gb|EKI39008.1| RNA-splicing ligase RtcB [Escherichia coli PA38]
gi|408224757|gb|EKI48461.1| RNA-splicing ligase RtcB [Escherichia coli EC1735]
gi|408236096|gb|EKI59016.1| RNA-splicing ligase RtcB [Escherichia coli EC1736]
gi|408239835|gb|EKI62573.1| RNA-splicing ligase RtcB [Escherichia coli EC1737]
gi|408244427|gb|EKI66865.1| RNA-splicing ligase RtcB [Escherichia coli EC1846]
gi|408253191|gb|EKI74804.1| RNA-splicing ligase RtcB [Escherichia coli EC1847]
gi|408256955|gb|EKI78309.1| RNA-splicing ligase RtcB [Escherichia coli EC1848]
gi|408263655|gb|EKI84499.1| RNA-splicing ligase RtcB [Escherichia coli EC1849]
gi|408272070|gb|EKI92177.1| RNA-splicing ligase RtcB [Escherichia coli EC1850]
gi|408274804|gb|EKI94790.1| RNA-splicing ligase RtcB [Escherichia coli EC1856]
gi|408283490|gb|EKJ02664.1| RNA-splicing ligase RtcB [Escherichia coli EC1862]
gi|408289207|gb|EKJ07981.1| RNA-splicing ligase RtcB [Escherichia coli EC1864]
gi|408304954|gb|EKJ22362.1| RNA-splicing ligase RtcB [Escherichia coli EC1868]
gi|408305796|gb|EKJ23186.1| RNA-splicing ligase RtcB [Escherichia coli EC1866]
gi|408316654|gb|EKJ32914.1| RNA-splicing ligase RtcB [Escherichia coli EC1869]
gi|408322110|gb|EKJ38105.1| RNA-splicing ligase RtcB [Escherichia coli EC1870]
gi|408324333|gb|EKJ40266.1| RNA-splicing ligase RtcB [Escherichia coli NE098]
gi|408334659|gb|EKJ49535.1| RNA-splicing ligase RtcB [Escherichia coli FRIK523]
gi|408343838|gb|EKJ58231.1| RNA-splicing ligase RtcB [Escherichia coli 0.1304]
gi|408546219|gb|EKK23635.1| RNA-splicing ligase RtcB [Escherichia coli 5.2239]
gi|408546530|gb|EKK23944.1| RNA-splicing ligase RtcB [Escherichia coli 3.4870]
gi|408547400|gb|EKK24795.1| RNA-splicing ligase RtcB [Escherichia coli 6.0172]
gi|408564938|gb|EKK41035.1| RNA-splicing ligase RtcB [Escherichia coli 8.0586]
gi|408576481|gb|EKK52073.1| RNA-splicing ligase RtcB [Escherichia coli 10.0833]
gi|408579243|gb|EKK54713.1| RNA-splicing ligase RtcB [Escherichia coli 8.2524]
gi|408589153|gb|EKK63685.1| RNA-splicing ligase RtcB [Escherichia coli 10.0869]
gi|408594300|gb|EKK68586.1| RNA-splicing ligase RtcB [Escherichia coli 88.0221]
gi|408599545|gb|EKK73445.1| RNA-splicing ligase RtcB [Escherichia coli 8.0416]
gi|408610228|gb|EKK83602.1| RNA-splicing ligase RtcB [Escherichia coli 10.0821]
gi|427202124|gb|EKV72467.1| RNA-splicing ligase RtcB [Escherichia coli 88.1042]
gi|427203060|gb|EKV73366.1| RNA-splicing ligase RtcB [Escherichia coli 89.0511]
gi|427218590|gb|EKV87587.1| RNA-splicing ligase RtcB [Escherichia coli 90.0091]
gi|427221925|gb|EKV90728.1| RNA-splicing ligase RtcB [Escherichia coli 90.2281]
gi|427239204|gb|EKW06696.1| RNA-splicing ligase RtcB [Escherichia coli 93.0056]
gi|427239576|gb|EKW07059.1| RNA-splicing ligase RtcB [Escherichia coli 93.0055]
gi|427243653|gb|EKW11017.1| RNA-splicing ligase RtcB [Escherichia coli 94.0618]
gi|427258977|gb|EKW25051.1| RNA-splicing ligase RtcB [Escherichia coli 95.0943]
gi|427261448|gb|EKW27384.1| RNA-splicing ligase RtcB [Escherichia coli 95.1288]
gi|427274309|gb|EKW38968.1| RNA-splicing ligase RtcB [Escherichia coli 96.0428]
gi|427277020|gb|EKW41579.1| RNA-splicing ligase RtcB [Escherichia coli 96.0427]
gi|427289798|gb|EKW53314.1| RNA-splicing ligase RtcB [Escherichia coli 96.0932]
gi|427296394|gb|EKW59448.1| RNA-splicing ligase RtcB [Escherichia coli 96.0107]
gi|427298529|gb|EKW61530.1| RNA-splicing ligase RtcB [Escherichia coli 97.0003]
gi|427309026|gb|EKW71354.1| RNA-splicing ligase RtcB [Escherichia coli 97.1742]
gi|427312142|gb|EKW74303.1| RNA-splicing ligase RtcB [Escherichia coli 97.0007]
gi|427325707|gb|EKW87141.1| RNA-splicing ligase RtcB [Escherichia coli 99.0678]
gi|427327170|gb|EKW88570.1| RNA-splicing ligase RtcB [Escherichia coli 99.0713]
gi|429251784|gb|EKY36362.1| RNA-splicing ligase RtcB [Escherichia coli 96.0109]
gi|429253048|gb|EKY37548.1| RNA-splicing ligase RtcB [Escherichia coli 97.0010]
gi|444535987|gb|ELV16035.1| RNA-splicing ligase RtcB [Escherichia coli 99.0814]
gi|444537345|gb|ELV17285.1| RNA-splicing ligase RtcB [Escherichia coli 09BKT078844]
gi|444546157|gb|ELV24933.1| RNA-splicing ligase RtcB [Escherichia coli 99.0815]
gi|444555401|gb|ELV32870.1| RNA-splicing ligase RtcB [Escherichia coli 99.0839]
gi|444555888|gb|ELV33331.1| RNA-splicing ligase RtcB [Escherichia coli 99.0816]
gi|444560687|gb|ELV37836.1| RNA-splicing ligase RtcB [Escherichia coli 99.0848]
gi|444573851|gb|ELV50194.1| RNA-splicing ligase RtcB [Escherichia coli 99.1775]
gi|444576955|gb|ELV53101.1| RNA-splicing ligase RtcB [Escherichia coli 99.1793]
gi|444590174|gb|ELV65488.1| RNA-splicing ligase RtcB [Escherichia coli PA11]
gi|444591423|gb|ELV66713.1| RNA-splicing ligase RtcB [Escherichia coli 99.1805]
gi|444604191|gb|ELV78866.1| RNA-splicing ligase RtcB [Escherichia coli PA13]
gi|444604771|gb|ELV79434.1| RNA-splicing ligase RtcB [Escherichia coli PA19]
gi|444613188|gb|ELV87451.1| RNA-splicing ligase RtcB [Escherichia coli PA2]
gi|444620893|gb|ELV94885.1| RNA-splicing ligase RtcB [Escherichia coli PA47]
gi|444621123|gb|ELV95101.1| RNA-splicing ligase RtcB [Escherichia coli PA48]
gi|444627603|gb|ELW01361.1| RNA-splicing ligase RtcB [Escherichia coli PA8]
gi|444635898|gb|ELW09307.1| RNA-splicing ligase RtcB [Escherichia coli 7.1982]
gi|444638450|gb|ELW11788.1| RNA-splicing ligase RtcB [Escherichia coli 99.1781]
gi|444643012|gb|ELW16183.1| RNA-splicing ligase RtcB [Escherichia coli 99.1762]
gi|444652410|gb|ELW25171.1| RNA-splicing ligase RtcB [Escherichia coli PA35]
gi|444657634|gb|ELW30103.1| RNA-splicing ligase RtcB [Escherichia coli 3.4880]
gi|444660700|gb|ELW33050.1| RNA-splicing ligase RtcB [Escherichia coli 95.0083]
gi|444667910|gb|ELW39938.1| RNA-splicing ligase RtcB [Escherichia coli 99.0670]
Length = 408
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|386857953|ref|YP_006262130.1| RtcB protein [Deinococcus gobiensis I-0]
gi|380001482|gb|AFD26672.1| RtcB protein [Deinococcus gobiensis I-0]
Length = 469
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 32/180 (17%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GT G+GNH+ E + ++G+E + V+ HSGSRGFG QVA
Sbjct: 215 QIGTSGSGNHFVEFGTLSLAQPD---PELGLEAGEYLAVLSHSGSRGFGAQVAG----HF 267
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
T +A I+ ++LA ++ +EGQ Y ++M A +A N
Sbjct: 268 TALA------------GRLHPGIDKVAQKLAWLPLDGEEGQAYWQAMNLAGRYALANHD- 314
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L A+ +P + SHN+A E +VDG++ L+VHRK + P+ G
Sbjct: 315 ---LIHARLARALGVSPLAQASN-----SHNLAWKE--VVDGQE--LIVHRKGATPAAKG 362
>gi|414154441|ref|ZP_11410760.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411454232|emb|CCO08664.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 402
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 75/179 (41%), Gaps = 40/179 (22%)
Query: 67 KRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT- 125
+RG Q+GTLG GNH+ EIQ ++ VC+M+HSGSR FG Q+A
Sbjct: 149 ERGYYQMGTLGGGNHFIEIQ---------------ADERDMVCIMLHSGSRNFGWQIAKH 193
Query: 126 -GKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
K + + PD + T D LA ++S EG Y+ M A F
Sbjct: 194 FNHLAKTLNIRWQQPDPV-------------TYD--LAFLPLSSTEGNSYMVWMDLALQF 238
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
A NR M + K + + HN A E H G+Q ++VHRK
Sbjct: 239 AMENRHRMMDIVMDILQKHRPA----VTFSRFINAHHNYAALEHHF--GRQ--VVVHRK 289
>gi|416789331|ref|ZP_11880462.1| hypothetical protein ECO9389_01514 [Escherichia coli O157:H- str.
493-89]
gi|416801194|ref|ZP_11885367.1| hypothetical protein ECO2687_04404 [Escherichia coli O157:H- str. H
2687]
gi|416832770|ref|ZP_11899933.1| hypothetical protein ECOSU61_15870 [Escherichia coli O157:H7 str.
LSU-61]
gi|420282686|ref|ZP_14784918.1| RNA-splicing ligase RtcB [Escherichia coli TW06591]
gi|425269292|ref|ZP_18660915.1| RNA-splicing ligase RtcB [Escherichia coli 5412]
gi|209756368|gb|ACI76496.1| hypothetical protein ECs4264 [Escherichia coli]
gi|320645202|gb|EFX14218.1| hypothetical protein ECO9389_01514 [Escherichia coli O157:H- str.
493-89]
gi|320650513|gb|EFX18979.1| hypothetical protein ECO2687_04404 [Escherichia coli O157:H- str. H
2687]
gi|320666512|gb|EFX33495.1| hypothetical protein ECOSU61_15870 [Escherichia coli O157:H7 str.
LSU-61]
gi|390779477|gb|EIO47191.1| RNA-splicing ligase RtcB [Escherichia coli TW06591]
gi|408181124|gb|EKI07700.1| RNA-splicing ligase RtcB [Escherichia coli 5412]
Length = 408
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|110807255|ref|YP_690775.1| hypothetical protein SFV_3428 [Shigella flexneri 5 str. 8401]
gi|110616803|gb|ABF05470.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 408
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFI------- 170
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
K+ +++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 171 --------KICLDESEQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|405371177|ref|ZP_11026888.1| Protein RtcB [Chondromyces apiculatus DSM 436]
gi|397089162|gb|EJJ20098.1| Protein RtcB [Myxococcus sp. (contaminant ex DSM 436)]
Length = 450
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 47/181 (25%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLG+LG GNH+ E+Q+ + G+V VM+H+GSRGFG +A
Sbjct: 194 QLGSLGGGNHFTEMQVDQD---------------GRVWVMLHTGSRGFGWNIAK------ 232
Query: 132 TCMAYVFPDALVQME-KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRS 190
+ F + Q+ K+ D++ + S G+DY AANFA NR
Sbjct: 233 ----HFFVEGAAQLGLKSRSEDHVWLD--------AESPLGRDYWNLHNMAANFAVANRL 280
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ A F T HV Y++SHN+ + K+ V RK + + P
Sbjct: 281 IIGEAVCDALEAVFGGT-----AHVYYEISHNLIQ--------KEAGRFVARKGATRAFP 327
Query: 251 G 251
G
Sbjct: 328 G 328
>gi|257056324|ref|YP_003134156.1| hypothetical protein Svir_23210 [Saccharomonospora viridis DSM
43017]
gi|256586196|gb|ACU97329.1| uncharacterized conserved protein [Saccharomonospora viridis DSM
43017]
Length = 398
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 27/141 (19%)
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+ ++R QLGTLG GNH+ E+ + + G ED G+V +M+HSGSRG G+++
Sbjct: 145 KLRERAHRQLGTLGGGNHFIEVCL-----------EQGGEDDGRVWLMLHSGSRGIGNEL 193
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
A E + + N + DR LA + E + Y + A
Sbjct: 194 AKRHIEIAKSLPH----------------NADLPDRDLAVFVTGTPEMEAYRNDLYWAQE 237
Query: 184 FAWVNRSSMTFLCRQAFAKQF 204
+A NR++M L ++A A +
Sbjct: 238 YAARNRATMLALVKKALADEV 258
>gi|187732471|ref|YP_001882098.1| RtcB protein [Shigella boydii CDC 3083-94]
gi|420382550|ref|ZP_14881985.1| RNA-splicing ligase RtcB [Shigella dysenteriae 225-75]
gi|187429463|gb|ACD08737.1| RtcB protein [Shigella boydii CDC 3083-94]
gi|391298697|gb|EIQ56697.1| RNA-splicing ligase RtcB [Shigella dysenteriae 225-75]
Length = 408
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFI------- 170
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
K+ +++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 171 --------KICLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|399077327|ref|ZP_10752361.1| hypothetical protein PMI01_03453 [Caulobacter sp. AP07]
gi|398035554|gb|EJL28790.1| hypothetical protein PMI01_03453 [Caulobacter sp. AP07]
Length = 405
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 32/166 (19%)
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A RG LGTLG GNH+ E+ +DE D W VM+HSGSRG G++
Sbjct: 154 AHPRGFGHLGTLGTGNHFIEL-CLDEAGDVW--------------VMLHSGSRGVGNRFG 198
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T E+ + M+R I D+ LA S+ DY+++++ A +
Sbjct: 199 TYFIER--------------AKHEMRRWYINLPDQDLAYFAEGSEGFIDYVRAVSWAQKY 244
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
A NR M Q A T PD + + HN E+H
Sbjct: 245 ARANREVMM---DQVLAVLRRTFPDLMVTQEAVNCHHNYVSREKHF 287
>gi|254192289|ref|ZP_04898778.1| RtcB protein [Burkholderia pseudomallei Pasteur 52237]
gi|157987484|gb|EDO95260.1| RtcB protein [Burkholderia pseudomallei Pasteur 52237]
Length = 393
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 50/250 (20%)
Query: 5 IPVGVGSKGI-IPMNARDLEEAL-----EMGMDWSLREGYIWAEDKEHCEE-YGRMLNAD 57
+ +G G + + + A DL E+L ++ D L G + HC+ + L
Sbjct: 73 VDIGCGMNAVRLSLKATDLPESLTEIRHQIERDVPLGAGGAQKLSEAHCKRLWESGLFDT 132
Query: 58 PSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR 117
+K+ + + + QLGTLG+GNH+ EI +DE D W +M+HSGSR
Sbjct: 133 NNKIVQDNRGKAMSQLGTLGSGNHFIEI-CLDESDDVW--------------IMLHSGSR 177
Query: 118 GFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
G G+ + T Y A +ME+ I D LA ++ + ++Y+ +
Sbjct: 178 GIGNMIGT----------YFIEKAKRRMEQYF----IHLPDGDLAYLPEDTDDFREYVDA 223
Query: 178 MAAAANFAWVNRSSM----TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDG 233
+A A N+A NR M R +F T + ++ H HN E H
Sbjct: 224 VAWAQNYALENRREMMQATISALRHHIPIEFAITHEAINCH------HNYIARENHF--- 274
Query: 234 KQKTLLVHRK 243
+ L V RK
Sbjct: 275 -GRNLWVTRK 283
>gi|386816133|ref|ZP_10103351.1| protein of unknown function UPF0027 [Thiothrix nivea DSM 5205]
gi|386420709|gb|EIJ34544.1| protein of unknown function UPF0027 [Thiothrix nivea DSM 5205]
Length = 409
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 39/164 (23%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
L LGTLG GNH+ E+ +DE W VM+HSGSRG G+++ +
Sbjct: 162 LKHLGTLGTGNHFIEV-CLDEDQAVW--------------VMLHSGSRGVGNKIGS---- 202
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
+ Q +K M+R I D+ LA S+ +DY++++A A +FA VNR
Sbjct: 203 ----------HFIAQAKKEMERWFIHLPDKDLAYLPEGSQHFRDYVEAVAWAQDFAQVNR 252
Query: 190 SSMTFLCRQA----FAKQFNTTPDDLDMHVIYDVSHNIAKTEEH 229
M QA K F+ + ++ H HN E H
Sbjct: 253 EVMMARTLQAIRTVLPKAFSADVEAVNCH------HNYISRENH 290
>gi|226357903|ref|YP_002787643.1| hypothetical protein Deide_3p01893 [Deinococcus deserti VCD115]
gi|226320146|gb|ACO48139.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 462
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGT G+GNH+ E + A+ +G+ + ++ HSGSRGFG QVA G ++
Sbjct: 209 QLGTSGSGNHFVEFGTL-----TLEAADLGLAPGQYIALLSHSGSRGFGAQVA-GHYTQV 262
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+ PD ++ + R+LA ++ EGQ Y +M A +A N
Sbjct: 263 A--QNLHPD-------------LDPDARKLAWLDMDRDEGQAYWTAMNLAGRYALANHE- 306
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ A+ P V SHN+A ++ M DG++ ++VHRK + P+ G
Sbjct: 307 ---VIHARIARALGVKP-----LVTVRNSHNLA-WKQRMPDGRE--VIVHRKGATPAGQG 355
>gi|325106613|ref|YP_004267681.1| hypothetical protein Plabr_0027 [Planctomyces brasiliensis DSM
5305]
gi|324966881|gb|ADY57659.1| protein of unknown function UPF0027 [Planctomyces brasiliensis DSM
5305]
Length = 462
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 61/244 (25%)
Query: 21 DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD--PSKVSMRAKKRGLPQLGTLGA 78
+L+ ALE G + + G W ++H +L+ D +KV+ K + QLGT G+
Sbjct: 160 NLKNALEKGTRFGV--GSKWDRPQQH-----DVLDRDWTITKVTRENKDKAWKQLGTSGS 212
Query: 79 GNHYAEIQI--VDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAY 136
GNH+ E I +DE D ++G++ + ++ HSGSRG G V C Y
Sbjct: 213 GNHFVEFGILTLDEADD-----ELGLQPGQYLALLSHSGSRGTGASV---------CNTY 258
Query: 137 VFPDALVQMEKAMKRDNIETNDR---QLACARINSKEGQDYLKSMA-----AAANFAWVN 188
++ + N+ D+ +LA ++++ GQ+Y +M AAAN A ++
Sbjct: 259 ----------SSIAQANLSKRDKRHGRLAWLDLDTQAGQEYWAAMNLMGDYAAANHAVIH 308
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
++ + Q A N HN A E H + K ++VHRK + P+
Sbjct: 309 KNVYKLIGGQLLAGVEN--------------HHNFAWKETH----QGKEVIVHRKGATPA 350
Query: 249 HPGV 252
GV
Sbjct: 351 GAGV 354
>gi|440780195|ref|ZP_20958783.1| hypothetical protein F502_01430 [Clostridium pasteurianum DSM 525]
gi|440221871|gb|ELP61075.1| hypothetical protein F502_01430 [Clostridium pasteurianum DSM 525]
Length = 410
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q +E G + +M+HSGSR FG +V C
Sbjct: 154 GYFQIGTLGGGNHFIELQEDEE---------------GNLGIMLHSGSRNFGRRV----C 194
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ MA E K + + +LA +++ EG+ Y+ M A +FA+ N
Sbjct: 195 DHFNKMA---------RELNEKWHSAVPLEYRLAFLPVDTDEGKRYIDWMNLALDFAYEN 245
Query: 189 RSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
R M K D +++ + + HN A E H K + VHRK
Sbjct: 246 REKMITAVTIIIEKWLEKYTDLNIEYTLEINCHHNYASLENHYC----KNVWVHRK 297
>gi|406920583|gb|EKD58621.1| hypothetical protein ACD_56C00084G0003 [uncultured bacterium]
Length = 502
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 72 QLGTLGA-GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG-HQVATGKCE 129
+LG LGA GNH+ ++ V ++ D A K+G++ GQ +M+H+GS G + + T +
Sbjct: 198 RLGILGAAGNHFLDLMKVSDVIDSQMAEKLGVKK-GQYLLMVHTGSGILGQYTMYTHTAK 256
Query: 130 KITCMAYVFPDALVQME-KAMKRDNIE----------TNDRQLACARINSKEGQDYLKSM 178
K ++ AL +M K K++ + T D L ++GQ Y+ +
Sbjct: 257 KAEHLSQAIMVALGKMTFKTSKKEVYQRMQEKIAKHMTKDDSLLTYDGEGEDGQLYMNAR 316
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
AAA+NF NR+ + QA + +++M +IYD+ H E H K +
Sbjct: 317 AAASNFGTANRAVIIHNIAQACQEVLGR---EVEMDLIYDLPHISITQENHF----GKDV 369
Query: 239 LVHRKVSE--------PSHP 250
VHR + P HP
Sbjct: 370 WVHRSNTSRAYGPAKMPDHP 389
>gi|419393558|ref|ZP_13934359.1| hypothetical protein ECDEC15A_4193 [Escherichia coli DEC15A]
gi|419398661|ref|ZP_13939423.1| hypothetical protein ECDEC15B_3996 [Escherichia coli DEC15B]
gi|419403942|ref|ZP_13944660.1| hypothetical protein ECDEC15C_3902 [Escherichia coli DEC15C]
gi|419409101|ref|ZP_13949785.1| hypothetical protein ECDEC15D_3845 [Escherichia coli DEC15D]
gi|419414653|ref|ZP_13955287.1| hypothetical protein ECDEC15E_4188 [Escherichia coli DEC15E]
gi|422763709|ref|ZP_16817463.1| rtcB protein [Escherichia coli E1167]
gi|324116383|gb|EGC10302.1| rtcB protein [Escherichia coli E1167]
gi|378235224|gb|EHX95296.1| hypothetical protein ECDEC15A_4193 [Escherichia coli DEC15A]
gi|378240563|gb|EHY00533.1| hypothetical protein ECDEC15B_3996 [Escherichia coli DEC15B]
gi|378244245|gb|EHY04189.1| hypothetical protein ECDEC15C_3902 [Escherichia coli DEC15C]
gi|378252553|gb|EHY12442.1| hypothetical protein ECDEC15D_3845 [Escherichia coli DEC15D]
gi|378256677|gb|EHY16525.1| hypothetical protein ECDEC15E_4188 [Escherichia coli DEC15E]
Length = 408
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
++++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDELDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|108763429|ref|YP_629773.1| hypothetical protein MXAN_1521 [Myxococcus xanthus DK 1622]
gi|108467309|gb|ABF92494.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 474
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATG---KCE 129
L T+G GNH+ E+Q V+ + D+ A G+ + GQ+ MIHSGSR G V +
Sbjct: 219 LATIGGGNHFVEVQRVEAVEDRARAWDWGVRE-GQLAFMIHSGSRDVGKHVGVAWQDRAR 277
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
+ P + + + D +L +YL++ A AAN+A++NR
Sbjct: 278 QAWPAGTPLPASGI----------LPLGDARLVT---------EYLEAEATAANYAFLNR 318
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNI 223
+ L RQ + F D++ ++YDV HN+
Sbjct: 319 LLLAELLRQTLRELFG----DVEAPLVYDVPHNL 348
>gi|440765064|ref|ZP_20944086.1| protein RtcB [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|440769537|ref|ZP_20948494.1| protein RtcB [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|440774974|ref|ZP_20953860.1| protein RtcB [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|436412338|gb|ELP10281.1| protein RtcB [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|436414043|gb|ELP11975.1| protein RtcB [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|436414960|gb|ELP12884.1| protein RtcB [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
Length = 404
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGKPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 247 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 286
>gi|393770680|ref|ZP_10359158.1| hypothetical protein WSK_0119 [Novosphingobium sp. Rr 2-17]
gi|392723787|gb|EIZ81174.1| hypothetical protein WSK_0119 [Novosphingobium sp. Rr 2-17]
Length = 408
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 41/207 (19%)
Query: 47 CEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVG 106
E +GR++ +K AK L LGTLG GNH+ E+ + E
Sbjct: 142 AERFGRIV----AKYPKLAKTNNLVHLGTLGTGNHFIELCLDTE---------------Q 182
Query: 107 QVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKA-MKRDNIETNDRQLACAR 165
+V +M+HSGSRG G+ + T + +++ K M++ I D LA
Sbjct: 183 RVWIMLHSGSRGVGNAIGT---------------SFIELAKQDMRKWFINLPDEDLAYFP 227
Query: 166 INSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAK 225
+ DY++++ A +FA +NR +M +A Q P D +M + + HN +
Sbjct: 228 EGTDHFDDYVEAVGWAQDFAALNRRTMMTNVIRALRGQI-AKPFDAEMEAV-NCHHNYVQ 285
Query: 226 TEEHMVDGKQKTLLVHRKVSEPSHPGV 252
E H + +LV RK + + GV
Sbjct: 286 RENHF----GQNVLVTRKGAVRAAKGV 308
>gi|417514125|ref|ZP_12178008.1| Protein RtcB [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|419730763|ref|ZP_14257698.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419734927|ref|ZP_14261811.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419739112|ref|ZP_14265865.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419743377|ref|ZP_14270042.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419746529|ref|ZP_14273105.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421571871|ref|ZP_16017539.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421575364|ref|ZP_16020977.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421578999|ref|ZP_16024569.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421586156|ref|ZP_16031639.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|353634808|gb|EHC81286.1| Protein RtcB [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|381293153|gb|EIC34325.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381295748|gb|EIC36857.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381300079|gb|EIC41144.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381311862|gb|EIC52672.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381320812|gb|EIC61340.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|402519426|gb|EJW26788.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402522404|gb|EJW29728.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402522970|gb|EJW30289.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402528881|gb|EJW36130.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 404
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 247 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 286
>gi|197250640|ref|YP_002148442.1| hypothetical protein SeAg_B3720 [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197214343|gb|ACH51740.1| conserved protein RtcB [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
Length = 405
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGKPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|437833830|ref|ZP_20844799.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435301666|gb|ELO77666.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 404
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 247 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 286
>gi|62182020|ref|YP_218437.1| hypothetical protein SC3450 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|194451088|ref|YP_002047544.1| hypothetical protein SeHA_C3827 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205359048|ref|ZP_02666595.2| RtcB protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|224585313|ref|YP_002639112.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375116362|ref|ZP_09761532.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|386593193|ref|YP_006089593.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|62129653|gb|AAX67356.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|194409392|gb|ACF69611.1| RtcB protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|205338805|gb|EDZ25569.1| RtcB protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|224469841|gb|ACN47671.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322716508|gb|EFZ08079.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|383800234|gb|AFH47316.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
Length = 405
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|422027760|ref|ZP_16374085.1| hypothetical protein B571_17587 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422032801|ref|ZP_16378893.1| hypothetical protein B572_17714 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427555185|ref|ZP_18929388.1| hypothetical protein B576_17671 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427572800|ref|ZP_18933994.1| hypothetical protein B577_16550 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427594188|ref|ZP_18938903.1| hypothetical protein B573_17130 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427618439|ref|ZP_18943814.1| hypothetical protein B574_17629 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427642064|ref|ZP_18948672.1| hypothetical protein B575_17757 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427657789|ref|ZP_18953417.1| hypothetical protein B578_17324 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427663004|ref|ZP_18958288.1| hypothetical protein B579_17760 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427678549|ref|ZP_18963196.1| hypothetical protein B580_17999 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427800919|ref|ZP_18968593.1| hypothetical protein B581_20827 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|414013382|gb|EKS97268.1| hypothetical protein B571_17587 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414014527|gb|EKS98369.1| hypothetical protein B576_17671 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414014959|gb|EKS98792.1| hypothetical protein B572_17714 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414028278|gb|EKT11472.1| hypothetical protein B577_16550 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414029499|gb|EKT12657.1| hypothetical protein B573_17130 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414031962|gb|EKT14996.1| hypothetical protein B574_17629 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414043022|gb|EKT25541.1| hypothetical protein B575_17757 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414043361|gb|EKT25869.1| hypothetical protein B578_17324 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414048534|gb|EKT30782.1| hypothetical protein B579_17760 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414056392|gb|EKT38223.1| hypothetical protein B580_17999 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414062913|gb|EKT44140.1| hypothetical protein B581_20827 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 404
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGNPPANVNEKWAQLEAGYQWL-------------TQKYPRFLNTNNYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 247 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 286
>gi|417376411|ref|ZP_12145606.1| Protein RtcB [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|353593190|gb|EHC51011.1| Protein RtcB [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
Length = 405
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|168232659|ref|ZP_02657717.1| RtcB protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|194472997|ref|ZP_03078981.1| RtcB protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|421883988|ref|ZP_16315208.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|194459361|gb|EDX48200.1| RtcB protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|205333046|gb|EDZ19810.1| RtcB protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|379986461|emb|CCF87481.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 404
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 247 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 286
>gi|331674908|ref|ZP_08375665.1| protein RtcB [Escherichia coli TA280]
gi|331067817|gb|EGI39215.1| protein RtcB [Escherichia coli TA280]
Length = 408
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLG 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQGVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|397737364|ref|ZP_10504036.1| hypothetical protein JVH1_8642 [Rhodococcus sp. JVH1]
gi|396926803|gb|EJI94040.1| hypothetical protein JVH1_8642 [Rhodococcus sp. JVH1]
Length = 401
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 42/196 (21%)
Query: 48 EEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 107
+E+G + + S+ S R + Q+GTLG GNH+ E+ + D +
Sbjct: 139 QEFGDLHSGVQSRES-----RAMKQIGTLGGGNHFIEVC---------------LSDADE 178
Query: 108 VCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARIN 167
V +M+HSGSR G ++A E+ +A P N DR LA
Sbjct: 179 VWLMLHSGSRNIGKELA----ERHIAVARALP------------HNQRLVDRDLAVFLAG 222
Query: 168 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
SKE Y + A +A NR+ M L QAF + P D + HN
Sbjct: 223 SKEMDAYRHDLTWAQEYAARNRAVMLTLVMQAFRQALPGRPVRFDEPI--SCHHNY--VS 278
Query: 228 EHMVDGKQKTLLVHRK 243
E ++DG + +LV RK
Sbjct: 279 EEIIDG--EPMLVTRK 292
>gi|418774185|ref|ZP_13330156.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418784270|ref|ZP_13340108.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804411|ref|ZP_13360016.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419794993|ref|ZP_14320599.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392613701|gb|EIW96156.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392751687|gb|EJA08635.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392754614|gb|EJA11530.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392770568|gb|EJA27293.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 404
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 247 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 286
>gi|197265919|ref|ZP_03165993.1| conserved protein RtcB [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197244174|gb|EDY26794.1| conserved protein RtcB [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
Length = 421
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 137 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 175
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 176 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 214
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 215 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 263
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 264 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 303
>gi|205357607|ref|ZP_02571825.2| RtcB protein [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|378446895|ref|YP_005234527.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378452364|ref|YP_005239724.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701413|ref|YP_005183371.1| hypothetical protein SL1344_3486 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378990824|ref|YP_005253988.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379702780|ref|YP_005244508.1| RtcB protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383498160|ref|YP_005398849.1| hypothetical protein UMN798_3822 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|205330711|gb|EDZ17475.1| RtcB protein [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261248674|emb|CBG26512.1| hypothetical protein STMMW_35091 [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995743|gb|ACY90628.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160062|emb|CBW19581.1| hypothetical protein SL1344_3486 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|323131879|gb|ADX19309.1| RtcB protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|332990371|gb|AEF09354.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380464981|gb|AFD60384.1| hypothetical protein UMN798_3822 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
Length = 405
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGNPPANVNEKWAQLEAGYQWL-------------TQKYPRFLNTNNYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|205356875|ref|ZP_02343031.2| RtcB protein [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205325691|gb|EDZ13530.1| RtcB protein [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 405
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|195873817|ref|ZP_02699099.2| RtcB protein [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|195632498|gb|EDX50982.1| RtcB protein [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
Length = 421
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 47/197 (23%)
Query: 34 LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 154 LEAGYQWLTQK-----YPRFLNTNSYK-----------HLGTLGTGNHFIEI-------- 189
Query: 94 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN 153
+++ +V +M+HSGSRG G+ + T + L Q E + +
Sbjct: 190 -------CLDETDRVWIMLHSGSRGIGNAIGT------------YFIGLAQQEMQEQLET 230
Query: 154 IETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDM 213
+ + D LA S+ DYLK++ A FA +NR +M A + P LDM
Sbjct: 231 LPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVE-KPIALDM 287
Query: 214 HVIYDVSHNIAKTEEHM 230
I + HN + E+H
Sbjct: 288 DEI-NCHHNYVQKEQHF 303
>gi|357590809|ref|ZP_09129475.1| hypothetical protein CnurS_11458 [Corynebacterium nuruki S6-4]
Length = 399
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 29/121 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLG+LG GNH+ E+ + +E +V + +HSGSRG G+++A
Sbjct: 154 QLGSLGGGNHFIELSLDEE---------------DRVWMFLHSGSRGVGNKIAQKHIR-- 196
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+K M++ IE DR LA + E YL+ +A A FAW+NR
Sbjct: 197 ------------TAQKLMRKFWIELPDRDLAYLPEGTPEFDSYLRDLAWAQRFAWLNREE 244
Query: 192 M 192
M
Sbjct: 245 M 245
>gi|442317077|ref|YP_007357098.1| hypothetical protein MYSTI_00055 [Myxococcus stipitatus DSM 14675]
gi|441484719|gb|AGC41414.1| hypothetical protein MYSTI_00055 [Myxococcus stipitatus DSM 14675]
Length = 450
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 39/162 (24%)
Query: 66 KKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 125
+KRG QLG+LG GNH+ E+Q+ +E G+V VM+H+GSRGFG +A
Sbjct: 190 EKRG--QLGSLGGGNHFTEMQVDEE---------------GRVWVMLHTGSRGFGWNIAK 232
Query: 126 GKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFA 185
+ F + Q+ +++ +S G++Y AANFA
Sbjct: 233 ----------HFFVEGAAQL-------GLKSRSEDFVWLDADSPLGREYWNLHNMAANFA 275
Query: 186 WVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
NR + A F T V Y++SHN+ + E
Sbjct: 276 VANRLIIGEAVCAALEDVFGGTAS-----VYYEISHNLIQKE 312
>gi|434388046|ref|YP_007098657.1| hypothetical protein Cha6605_4185 [Chamaesiphon minutus PCC 6605]
gi|428019036|gb|AFY95130.1| hypothetical protein Cha6605_4185 [Chamaesiphon minutus PCC 6605]
Length = 488
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 28/156 (17%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+ EIQ V EI + A K I+ VGQ+ + IHSGSR G + G
Sbjct: 230 LGTIGGGNHFVEIQEVIEIRNPRLAYKSNIK-VGQLAIAIHSGSRTVGKYIG-GMWRDRA 287
Query: 133 CMAYV----FPDA-LVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWV 187
A++ FP + L + D + +YL++ A AAN+A+V
Sbjct: 288 KAAWLKGCPFPQSDLFSLSTTTNPDLVA-----------------EYLEAEATAANYAFV 330
Query: 188 NRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNI 223
NR + L R + + D+ ++ D+ HN+
Sbjct: 331 NRLILAELMRLRLREVYG----DIAAPLVCDLPHNL 362
>gi|331665026|ref|ZP_08365927.1| protein RtcB [Escherichia coli TA143]
gi|432767766|ref|ZP_20002159.1| protein rtcB [Escherichia coli KTE50]
gi|432963923|ref|ZP_20153270.1| protein rtcB [Escherichia coli KTE202]
gi|433064850|ref|ZP_20251759.1| protein rtcB [Escherichia coli KTE125]
gi|331057536|gb|EGI29522.1| protein RtcB [Escherichia coli TA143]
gi|431322185|gb|ELG09773.1| protein rtcB [Escherichia coli KTE50]
gi|431470450|gb|ELH50372.1| protein rtcB [Escherichia coli KTE202]
gi|431578703|gb|ELI51296.1| protein rtcB [Escherichia coli KTE125]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYL ++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLNAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|432720538|ref|ZP_19955502.1| protein rtcB [Escherichia coli KTE9]
gi|432794614|ref|ZP_20028695.1| protein rtcB [Escherichia coli KTE78]
gi|432796130|ref|ZP_20030170.1| protein rtcB [Escherichia coli KTE79]
gi|431260573|gb|ELF52670.1| protein rtcB [Escherichia coli KTE9]
gi|431337098|gb|ELG24192.1| protein rtcB [Escherichia coli KTE78]
gi|431349351|gb|ELG36192.1| protein rtcB [Escherichia coli KTE79]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYL ++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLNAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|418762156|ref|ZP_13318289.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418768019|ref|ZP_13324075.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418769131|ref|ZP_13325166.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|419790551|ref|ZP_14316221.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392613240|gb|EIW95700.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732809|gb|EIZ90016.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392737865|gb|EIZ95017.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392740568|gb|EIZ97687.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
Length = 404
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 80/197 (40%), Gaps = 47/197 (23%)
Query: 34 LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
L GY W K Y R LN + K LGTLG GNH+ EI +DE
Sbjct: 137 LEAGYQWLTQK-----YPRFLNTNSYK-----------HLGTLGTGNHFIEI-CLDETDR 179
Query: 94 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN 153
W +M+HSGSRG G+ + T + L Q E + +
Sbjct: 180 VW--------------IMLHSGSRGIGNAIGT------------YFIGLAQQEMQEQLET 213
Query: 154 IETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDM 213
+ + D LA S+ DYLK++ A FA +NR +M A + P LDM
Sbjct: 214 LPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVE-KPIALDM 270
Query: 214 HVIYDVSHNIAKTEEHM 230
I + HN + E+H
Sbjct: 271 DEI-NCHHNYVQKEQHF 286
>gi|418780842|ref|ZP_13336730.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392748792|gb|EJA05773.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
Length = 404
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 80/197 (40%), Gaps = 47/197 (23%)
Query: 34 LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
L GY W K Y R LN + K LGTLG GNH+ EI +DE
Sbjct: 137 LEAGYQWLTQK-----YPRFLNTNSYK-----------HLGTLGTGNHFIEI-CLDETDR 179
Query: 94 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN 153
W +M+HSGSRG G+ + T + L Q E + +
Sbjct: 180 VW--------------IMLHSGSRGIGNAIGT------------YFIGLAQQEMQEQLET 213
Query: 154 IETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDM 213
+ + D LA S+ DYLK++ A FA +NR +M A + P LDM
Sbjct: 214 LPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVE-KPIALDM 270
Query: 214 HVIYDVSHNIAKTEEHM 230
I + HN + E+H
Sbjct: 271 DEI-NCHHNYVQKEQHF 286
>gi|336428344|ref|ZP_08608325.1| hypothetical protein HMPREF0994_04331 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336005597|gb|EGN35641.1| hypothetical protein HMPREF0994_04331 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 411
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q +D G + VM+HSGSR FG V C
Sbjct: 155 GYFQIGTLGGGNHFIELQ---------------EDDNGYLAVMLHSGSRHFGKSV----C 195
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ A E K + ++ +LA +++KEG YL M + +FA N
Sbjct: 196 DYFHAKA---------RELNQKWYSQVPDEYRLAFLPVDTKEGAHYLNWMQLSMDFAKEN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRK 243
R M L +A +++ DL + D++ HN A E H + + VHRK
Sbjct: 247 REKM-MLAVKAILEKWIGKYTDLTLEFSGDINCHHNYAALENHY----GENVWVHRK 298
>gi|422833839|ref|ZP_16881904.1| rtcB [Escherichia coli E101]
gi|371604462|gb|EHN93090.1| rtcB [Escherichia coli E101]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDGSDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|238910477|ref|ZP_04654314.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 405
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGKPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNNYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|432803586|ref|ZP_20037538.1| protein rtcB [Escherichia coli KTE84]
gi|431346125|gb|ELG33038.1| protein rtcB [Escherichia coli KTE84]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKELHF 290
>gi|320354586|ref|YP_004195925.1| hypothetical protein Despr_2496 [Desulfobulbus propionicus DSM
2032]
gi|320123088|gb|ADW18634.1| protein of unknown function UPF0027 [Desulfobulbus propionicus DSM
2032]
Length = 390
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 35/172 (20%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GTLG GNH+ EIQ G + ++ +M+HSGSR G++VA G+ +
Sbjct: 142 QIGTLGGGNHFIEIQ-------------RGRDQ--RIWLMVHSGSRNIGYKVA-GQYNTL 185
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+++ K ++ I + QLA + S EGQ YL+ M FA NR
Sbjct: 186 A----------IRLAKTKGQEAIPSQ-WQLAALPLASAEGQRYLREMEYCVAFARANRRE 234
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M ++ A+ T D + V DV+HN A E H + + VHRK
Sbjct: 235 MMNAFQEIVAE--ITGCDQFEPPV--DVAHNYAARETHF----GREVWVHRK 278
>gi|82545777|ref|YP_409724.1| hypothetical protein SBO_3409 [Shigella boydii Sb227]
gi|416296532|ref|ZP_11651457.1| Protein RtcB [Shigella flexneri CDC 796-83]
gi|417684003|ref|ZP_12333344.1| hypothetical protein SB359474_3899 [Shigella boydii 3594-74]
gi|420328318|ref|ZP_14830050.1| RNA-splicing ligase RtcB [Shigella flexneri CCH060]
gi|420354914|ref|ZP_14855991.1| RNA-splicing ligase RtcB [Shigella boydii 4444-74]
gi|421685290|ref|ZP_16125066.1| hypothetical protein SF148580_4671 [Shigella flexneri 1485-80]
gi|81247188|gb|ABB67896.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|320185937|gb|EFW60686.1| Protein RtcB [Shigella flexneri CDC 796-83]
gi|332090261|gb|EGI95359.1| hypothetical protein SB359474_3899 [Shigella boydii 3594-74]
gi|391244596|gb|EIQ03878.1| RNA-splicing ligase RtcB [Shigella flexneri CCH060]
gi|391274123|gb|EIQ32937.1| RNA-splicing ligase RtcB [Shigella boydii 4444-74]
gi|404334778|gb|EJZ61254.1| hypothetical protein SF148580_4671 [Shigella flexneri 1485-80]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFI------- 170
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
K+ +++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 171 --------KICLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKEQHF 290
>gi|417537934|ref|ZP_12190675.1| Protein RtcB [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353667551|gb|EHD05037.1| Protein RtcB [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 399
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 115 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNNYK-------- 153
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 154 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 192
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 193 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 241
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 242 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 281
>gi|160897901|ref|YP_001563483.1| release factor H-coupled RctB family protein [Delftia acidovorans
SPH-1]
gi|160363485|gb|ABX35098.1| release factor H-coupled RctB family protein [Delftia acidovorans
SPH-1]
Length = 384
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 47/180 (26%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q+VD +Y+ G D +V +M+HSGSRG G + E
Sbjct: 138 LGTIGGGNHFAELQVVDTLYED------GALDRKRVHLMVHSGSRGLGGAILRAHVE--- 188
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
A D + +S YL+ AAA FA +NR+S+
Sbjct: 189 ---------------AFSHDGLAA----------SSNAATQYLRQHAAAIAFAQLNRASI 223
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGV 252
+A + + D++HN H G+ L HRK + P+ G+
Sbjct: 224 AARLLRALRTRGQA---------LLDITHN--HVIAHHWRGEDGFL--HRKGATPADQGL 270
>gi|432366868|ref|ZP_19609985.1| protein rtcB [Escherichia coli KTE10]
gi|432487179|ref|ZP_19729087.1| protein rtcB [Escherichia coli KTE212]
gi|432672505|ref|ZP_19908028.1| protein rtcB [Escherichia coli KTE119]
gi|433175305|ref|ZP_20359816.1| protein rtcB [Escherichia coli KTE232]
gi|430891671|gb|ELC14197.1| protein rtcB [Escherichia coli KTE10]
gi|431013892|gb|ELD27614.1| protein rtcB [Escherichia coli KTE212]
gi|431208291|gb|ELF06513.1| protein rtcB [Escherichia coli KTE119]
gi|431689421|gb|ELJ54928.1| protein rtcB [Escherichia coli KTE232]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTRKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|429218594|ref|YP_007180238.1| hypothetical protein Deipe_0903 [Deinococcus peraridilitoris DSM
19664]
gi|429129457|gb|AFZ66472.1| hypothetical protein Deipe_0903 [Deinococcus peraridilitoris DSM
19664]
Length = 462
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GT G+GNH+ E + S +G++ + ++ HSGSRGFG QVA G K+
Sbjct: 209 QIGTSGSGNHFVEFGTL-----SIEKSDLGLQPGQYLALLSHSGSRGFGAQVA-GHYTKV 262
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+ ++ R+LA ++ +EGQ Y +M A +A N
Sbjct: 263 AQNLH---------------PKLDLEARKLAWLDMSREEGQAYWAAMELAGRYALANHE- 306
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ + A+ TP V SHN+A ++ + DG++ +VHRK + P+ G
Sbjct: 307 ---VIHERVARALKVTP-----LVAVSNSHNLAWRQQ-LPDGREA--IVHRKGATPAAQG 355
>gi|357056574|ref|ZP_09117614.1| hypothetical protein HMPREF9467_04586 [Clostridium clostridioforme
2_1_49FAA]
gi|355379999|gb|EHG27145.1| hypothetical protein HMPREF9467_04586 [Clostridium clostridioforme
2_1_49FAA]
Length = 353
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 35/177 (19%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q +D G + VMIHSGSR FG V
Sbjct: 155 GYYQIGTLGGGNHFIELQ---------------EDDDGYLAVMIHSGSRHFGKSVCDYFH 199
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
K + + ++ ++ +LA ++++EG+ YL M + +FA N
Sbjct: 200 YKARQLNQTWFSSV-------------PDEYRLAFLPVDTREGKQYLNWMQLSMDFAKEN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRK 243
R M + K+ +L + +D++ HN A E H K + VHRK
Sbjct: 247 REKMMLAVKAIMEKRIGKY-TELSLEFSHDINCHHNYASFENHY----GKDVWVHRK 298
>gi|254238673|ref|ZP_04931996.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126170604|gb|EAZ56115.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 404
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE+ W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEVDRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|71907502|ref|YP_285089.1| hypothetical protein Daro_1873 [Dechloromonas aromatica RCB]
gi|71847123|gb|AAZ46619.1| Protein of unknown function UPF0027 [Dechloromonas aromatica RCB]
Length = 398
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 38/161 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGTLG GNH+ E+ +DE W VM+HSGSRG G+ +AT E
Sbjct: 154 QLGTLGGGNHFIEV-CLDESEQLW--------------VMLHSGSRGIGNALATYFIE-- 196
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+ M+R I DR L + S DY++++ A +A+ NR
Sbjct: 197 ------------LARRDMERQQIHLPDRDLGYFKEGSAHFDDYVEAVHWAQEYAFANREC 244
Query: 192 MTFLCRQAFAK---QFNTTPDDLDMHVIYDVSHNIAKTEEH 229
M L A + +F+ T + ++ H HN E H
Sbjct: 245 MMDLVLAALHRHLPEFSVTSEVVNCH------HNYVAREHH 279
>gi|417521151|ref|ZP_12182909.1| Protein RtcB [Salmonella enterica subsp. enterica serovar Uganda
str. R8-3404]
gi|353642142|gb|EHC86681.1| Protein RtcB [Salmonella enterica subsp. enterica serovar Uganda
str. R8-3404]
Length = 405
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 121 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNNYK-------- 159
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 160 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 198
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 199 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 247
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + P LDM I + HN + E+H
Sbjct: 248 REAMMENALAALQRCVE-KPIALDMDEI-NCHHNYVQKEQHF 287
>gi|26250022|ref|NP_756062.1| protein rtcB [Escherichia coli CFT073]
gi|227883555|ref|ZP_04001360.1| protein rtcB [Escherichia coli 83972]
gi|300985300|ref|ZP_07177397.1| putative protein RtcB [Escherichia coli MS 45-1]
gi|301050367|ref|ZP_07197256.1| putative protein RtcB [Escherichia coli MS 185-1]
gi|386631304|ref|YP_006151024.1| protein rtcB [Escherichia coli str. 'clone D i2']
gi|386636224|ref|YP_006155943.1| protein rtcB [Escherichia coli str. 'clone D i14']
gi|422365616|ref|ZP_16446109.1| putative protein RtcB [Escherichia coli MS 153-1]
gi|442604069|ref|ZP_21018917.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Escherichia coli Nissle 1917]
gi|26110451|gb|AAN82636.1|AE016768_54 Protein rtcB [Escherichia coli CFT073]
gi|227839434|gb|EEJ49900.1| protein rtcB [Escherichia coli 83972]
gi|300297996|gb|EFJ54381.1| putative protein RtcB [Escherichia coli MS 185-1]
gi|300408171|gb|EFJ91709.1| putative protein RtcB [Escherichia coli MS 45-1]
gi|315291738|gb|EFU51094.1| putative protein RtcB [Escherichia coli MS 153-1]
gi|355422203|gb|AER86400.1| protein rtcB [Escherichia coli str. 'clone D i2']
gi|355427123|gb|AER91319.1| protein rtcB [Escherichia coli str. 'clone D i14']
gi|441715114|emb|CCQ04894.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Escherichia coli Nissle 1917]
Length = 429
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 155 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 193
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 194 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 233
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 234 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVMQKTVKQ 289
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E H
Sbjct: 290 PQTLAMEEI-NCHHNYVQKELHF 311
>gi|205359580|ref|ZP_02830666.2| RtcB protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409247200|ref|YP_006887899.1| Protein rtcB [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|205344587|gb|EDZ31351.1| RtcB protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320087934|emb|CBY97696.1| Protein rtcB [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 405
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 48/200 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 135 WAQLEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 173
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ +V +M+HSGSRG G+ + T + L Q E +
Sbjct: 174 ----------CLDETDRVWIMLHSGSRGIGNAIGT------------YFIGLAQQEMQEQ 211
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDD 210
+ + + D LA S+ DYLK++ A FA +NR +M A + P
Sbjct: 212 LETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVE-KPIA 268
Query: 211 LDMHVIYDVSHNIAKTEEHM 230
LDM I + HN + E+H
Sbjct: 269 LDMDEI-NCHHNYVQKEQHF 287
>gi|432594611|ref|ZP_19830923.1| protein rtcB [Escherichia coli KTE60]
gi|431126068|gb|ELE28422.1| protein rtcB [Escherichia coli KTE60]
Length = 408
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELETGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 213 T----LPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVMQKTVKQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKELHF 290
>gi|306816242|ref|ZP_07450380.1| hypothetical protein ECNC101_06509 [Escherichia coli NC101]
gi|386641014|ref|YP_006107812.1| hypothetical protein ECABU_c38410 [Escherichia coli ABU 83972]
gi|432383315|ref|ZP_19626240.1| protein rtcB [Escherichia coli KTE15]
gi|432413639|ref|ZP_19656293.1| protein rtcB [Escherichia coli KTE39]
gi|432433628|ref|ZP_19676052.1| protein rtcB [Escherichia coli KTE187]
gi|432438225|ref|ZP_19680608.1| protein rtcB [Escherichia coli KTE188]
gi|432458538|ref|ZP_19700714.1| protein rtcB [Escherichia coli KTE201]
gi|432497532|ref|ZP_19739324.1| protein rtcB [Escherichia coli KTE214]
gi|432506289|ref|ZP_19748008.1| protein rtcB [Escherichia coli KTE220]
gi|432515806|ref|ZP_19753021.1| protein rtcB [Escherichia coli KTE224]
gi|432525744|ref|ZP_19762862.1| protein rtcB [Escherichia coli KTE230]
gi|432570645|ref|ZP_19807151.1| protein rtcB [Escherichia coli KTE53]
gi|432609451|ref|ZP_19845632.1| protein rtcB [Escherichia coli KTE67]
gi|432613421|ref|ZP_19849578.1| protein rtcB [Escherichia coli KTE72]
gi|432648088|ref|ZP_19883873.1| protein rtcB [Escherichia coli KTE86]
gi|432653009|ref|ZP_19888754.1| protein rtcB [Escherichia coli KTE87]
gi|432657653|ref|ZP_19893349.1| protein rtcB [Escherichia coli KTE93]
gi|432700932|ref|ZP_19936076.1| protein rtcB [Escherichia coli KTE169]
gi|432747394|ref|ZP_19982055.1| protein rtcB [Escherichia coli KTE43]
gi|432785383|ref|ZP_20019560.1| protein rtcB [Escherichia coli KTE63]
gi|432846495|ref|ZP_20079137.1| protein rtcB [Escherichia coli KTE141]
gi|432907120|ref|ZP_20115596.1| protein rtcB [Escherichia coli KTE194]
gi|432940225|ref|ZP_20138139.1| protein rtcB [Escherichia coli KTE183]
gi|432973691|ref|ZP_20162534.1| protein rtcB [Escherichia coli KTE207]
gi|432975618|ref|ZP_20164452.1| protein rtcB [Escherichia coli KTE209]
gi|432987263|ref|ZP_20175975.1| protein rtcB [Escherichia coli KTE215]
gi|432997178|ref|ZP_20185760.1| protein rtcB [Escherichia coli KTE218]
gi|433001775|ref|ZP_20190293.1| protein rtcB [Escherichia coli KTE223]
gi|433040416|ref|ZP_20228006.1| protein rtcB [Escherichia coli KTE113]
gi|433059900|ref|ZP_20246935.1| protein rtcB [Escherichia coli KTE124]
gi|433084343|ref|ZP_20270789.1| protein rtcB [Escherichia coli KTE133]
gi|433089075|ref|ZP_20275437.1| protein rtcB [Escherichia coli KTE137]
gi|433103003|ref|ZP_20289074.1| protein rtcB [Escherichia coli KTE145]
gi|433117295|ref|ZP_20303079.1| protein rtcB [Escherichia coli KTE153]
gi|433126984|ref|ZP_20312529.1| protein rtcB [Escherichia coli KTE160]
gi|433141048|ref|ZP_20326292.1| protein rtcB [Escherichia coli KTE167]
gi|433146021|ref|ZP_20331153.1| protein rtcB [Escherichia coli KTE168]
gi|433151053|ref|ZP_20336052.1| protein rtcB [Escherichia coli KTE174]
gi|433190222|ref|ZP_20374309.1| protein rtcB [Escherichia coli KTE88]
gi|433200162|ref|ZP_20384048.1| protein rtcB [Escherichia coli KTE94]
gi|433209540|ref|ZP_20393206.1| protein rtcB [Escherichia coli KTE97]
gi|433214392|ref|ZP_20397973.1| protein rtcB [Escherichia coli KTE99]
gi|305850638|gb|EFM51095.1| hypothetical protein ECNC101_06509 [Escherichia coli NC101]
gi|307555506|gb|ADN48281.1| conserved protein RtcB [Escherichia coli ABU 83972]
gi|430903700|gb|ELC25436.1| protein rtcB [Escherichia coli KTE15]
gi|430933468|gb|ELC53874.1| protein rtcB [Escherichia coli KTE39]
gi|430950803|gb|ELC70031.1| protein rtcB [Escherichia coli KTE187]
gi|430960779|gb|ELC78830.1| protein rtcB [Escherichia coli KTE188]
gi|430979996|gb|ELC96760.1| protein rtcB [Escherichia coli KTE201]
gi|431021067|gb|ELD34396.1| protein rtcB [Escherichia coli KTE214]
gi|431035637|gb|ELD47020.1| protein rtcB [Escherichia coli KTE220]
gi|431038501|gb|ELD49397.1| protein rtcB [Escherichia coli KTE224]
gi|431048855|gb|ELD58823.1| protein rtcB [Escherichia coli KTE230]
gi|431097718|gb|ELE03045.1| protein rtcB [Escherichia coli KTE53]
gi|431135762|gb|ELE37637.1| protein rtcB [Escherichia coli KTE67]
gi|431146443|gb|ELE47879.1| protein rtcB [Escherichia coli KTE72]
gi|431178061|gb|ELE77974.1| protein rtcB [Escherichia coli KTE86]
gi|431187424|gb|ELE86925.1| protein rtcB [Escherichia coli KTE87]
gi|431187764|gb|ELE87263.1| protein rtcB [Escherichia coli KTE93]
gi|431240043|gb|ELF34505.1| protein rtcB [Escherichia coli KTE169]
gi|431289294|gb|ELF80035.1| protein rtcB [Escherichia coli KTE43]
gi|431326462|gb|ELG13808.1| protein rtcB [Escherichia coli KTE63]
gi|431392730|gb|ELG76301.1| protein rtcB [Escherichia coli KTE141]
gi|431428086|gb|ELH10028.1| protein rtcB [Escherichia coli KTE194]
gi|431460119|gb|ELH40408.1| protein rtcB [Escherichia coli KTE183]
gi|431479038|gb|ELH58781.1| protein rtcB [Escherichia coli KTE207]
gi|431486432|gb|ELH66082.1| protein rtcB [Escherichia coli KTE209]
gi|431494508|gb|ELH74096.1| protein rtcB [Escherichia coli KTE215]
gi|431502776|gb|ELH81661.1| protein rtcB [Escherichia coli KTE218]
gi|431504757|gb|ELH83381.1| protein rtcB [Escherichia coli KTE223]
gi|431548988|gb|ELI23079.1| protein rtcB [Escherichia coli KTE113]
gi|431566542|gb|ELI39565.1| protein rtcB [Escherichia coli KTE124]
gi|431598304|gb|ELI68100.1| protein rtcB [Escherichia coli KTE133]
gi|431601696|gb|ELI71207.1| protein rtcB [Escherichia coli KTE137]
gi|431616450|gb|ELI85511.1| protein rtcB [Escherichia coli KTE145]
gi|431631356|gb|ELI99668.1| protein rtcB [Escherichia coli KTE153]
gi|431641257|gb|ELJ09000.1| protein rtcB [Escherichia coli KTE160]
gi|431656704|gb|ELJ23679.1| protein rtcB [Escherichia coli KTE167]
gi|431658488|gb|ELJ25401.1| protein rtcB [Escherichia coli KTE168]
gi|431667642|gb|ELJ34222.1| protein rtcB [Escherichia coli KTE174]
gi|431702579|gb|ELJ67375.1| protein rtcB [Escherichia coli KTE88]
gi|431717906|gb|ELJ81988.1| protein rtcB [Escherichia coli KTE94]
gi|431728415|gb|ELJ92095.1| protein rtcB [Escherichia coli KTE97]
gi|431732392|gb|ELJ95847.1| protein rtcB [Escherichia coli KTE99]
Length = 408
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
++ +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVMQKTVK 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKELHF 290
>gi|414088272|ref|YP_006988450.1| putative RtcB-like protein [Caulobacter phage CcrColossus]
gi|408731642|gb|AFU88086.1| putative RtcB-like protein [Caulobacter phage CcrColossus]
Length = 409
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 33/164 (20%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
+ QLG+LG GNH+ EI I + G D V VM+HSGSRG G+ + E
Sbjct: 158 VTQLGSLGGGNHFIEICI---------QTDQGTTDP-NVWVMLHSGSRGVGNVIGNYFIE 207
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
K + A+ + ++ D LA + ++ DY++++ A +FA +NR
Sbjct: 208 K--------------AKNALAKRHVRPQDENLAWLEVGEQDFDDYIEAVGWAQDFARLNR 253
Query: 190 SSMTFLCRQA---FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
M +A F F T + ++ H HN E H
Sbjct: 254 DMMMVRVLKAIREFVPAFKTDKEAVNCH------HNYVNKERHF 291
>gi|338814126|ref|ZP_08626170.1| hypothetical protein ALO_17940 [Acetonema longum DSM 6540]
gi|337273895|gb|EGO62488.1| hypothetical protein ALO_17940 [Acetonema longum DSM 6540]
Length = 354
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
LGT+G GNH+AE Q+VD YD A +G++D Q+ +++HSGSRG+G +
Sbjct: 115 LGTIGGGNHFAEFQVVDTSYDHTACHAIGLKD-SQLLLLVHSGSRGYGQSI 164
>gi|225420117|ref|ZP_03762420.1| hypothetical protein CLOSTASPAR_06460 [Clostridium asparagiforme
DSM 15981]
gi|225041247|gb|EEG51493.1| hypothetical protein CLOSTASPAR_06460 [Clostridium asparagiforme
DSM 15981]
Length = 491
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 37/178 (20%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q D+ G + VMIHSGSR FG V
Sbjct: 235 GYYQIGTLGGGNHFIELQESDD---------------GFLTVMIHSGSRHFGKSV----- 274
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDR-QLACARINSKEGQDYLKSMAAAANFAWV 187
C + F + + KR + D +LA +S EG+ YL M + +FA
Sbjct: 275 ----CDYFHF-----KARELNKRWYSQVPDEYRLAFLPTDSSEGKRYLDWMNLSMDFAKE 325
Query: 188 NRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS--HNIAKTEEHMVDGKQKTLLVHRK 243
NR M L +A +++ D ++ D++ HN A E H K + VHRK
Sbjct: 326 NREKM-MLAVKAILEKWIGKYTDFELTFSGDINCHHNYAALENHY----DKNVWVHRK 378
>gi|295115119|emb|CBL35966.1| Uncharacterized conserved protein [butyrate-producing bacterium
SM4/1]
Length = 346
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 39/179 (21%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ E+Q +E G + VMIHSGSR FG V C
Sbjct: 154 GYFQIGTLGGGNHFIELQEDEE---------------GYLSVMIHSGSRHFGKAV----C 194
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ A E + + ++ +LA ++S+EG+ YL M + +FA N
Sbjct: 195 DYFHQKA---------RELNARWYSQVPDEYRLAFLPLDSREGRQYLNWMQLSMDFAMEN 245
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIY----DVSHNIAKTEEHMVDGKQKTLLVHRK 243
R+ M + K D+H+ + + HN A E H + + VHRK
Sbjct: 246 RAKMMLAVKAILEKWIGKY---TDLHLAFTEEINCHHNYAALENHY----GENVWVHRK 297
>gi|254420207|ref|ZP_05033931.1| Uncharacterized protein family UPF0027 [Brevundimonas sp. BAL3]
gi|196186384|gb|EDX81360.1| Uncharacterized protein family UPF0027 [Brevundimonas sp. BAL3]
Length = 405
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A RG LGTLG GNH+ E+ +DE D W VM+HSGSRG G++
Sbjct: 154 AHPRGFGHLGTLGTGNHFIEL-CLDEAGDVW--------------VMLHSGSRGVGNRFG 198
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
T E+ + M+R +I D+ LA + DY+++++ A +
Sbjct: 199 TYFIER--------------AKHEMRRWHINLPDQDLAYFPEGTDGFVDYVRAVSWAQKY 244
Query: 185 AWVNRSSM---TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
A NR M +AF TT + ++ H HN E+H
Sbjct: 245 ARANREVMMDSVLGVLKAFWPDLETTQEAVNCH------HNYVSKEKHF 287
>gi|432389169|ref|ZP_19632049.1| protein rtcB [Escherichia coli KTE16]
gi|430904639|gb|ELC26348.1| protein rtcB [Escherichia coli KTE16]
Length = 292
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 84/201 (41%), Gaps = 51/201 (25%)
Query: 34 LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 21 LEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI-------- 56
Query: 94 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN 153
+++ QV +M+HSGSRG G+ + T F D L Q E ++
Sbjct: 57 -------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---MQET 94
Query: 154 IET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTTPD 209
+ET R LA ++ DYLK++A A FA +NR +M Q+ ++ P
Sbjct: 95 LETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVMQKTVKQPQ 154
Query: 210 DLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E H
Sbjct: 155 TLAMEEI-NCHHNYVQKELHF 174
>gi|295092079|emb|CBK78186.1| Uncharacterized conserved protein [Clostridium cf. saccharolyticum
K10]
Length = 410
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 79/191 (41%), Gaps = 47/191 (24%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--- 125
G Q+GTLG GNH+ E+Q +E G + VMIHSGSR FG V
Sbjct: 154 GYFQIGTLGGGNHFIELQEDEE---------------GYLSVMIHSGSRHFGKAVCDYFH 198
Query: 126 GKCEKITCMAYV-FPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
K ++ Y PD + +LA ++S+EG+ YL M + +F
Sbjct: 199 QKARELNARWYSQVPD-----------------EYRLAFLPLDSREGRQYLNWMQLSMDF 241
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIY----DVSHNIAKTEEHMVDGKQKTLLV 240
A NR+ M + K D+H+ + + HN A E H + + V
Sbjct: 242 AMENRAKMMLAVKAILEKWIGKYT---DLHLAFTEEINCHHNYAALENHY----GENVWV 294
Query: 241 HRKVSEPSHPG 251
HRK + + G
Sbjct: 295 HRKGATRAREG 305
>gi|152986556|ref|YP_001351579.1| hypothetical protein PSPA7_6268 [Pseudomonas aeruginosa PA7]
gi|150961714|gb|ABR83739.1| hypothetical protein PSPA7_6268 [Pseudomonas aeruginosa PA7]
Length = 379
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + E ++
Sbjct: 129 LGTIGGGNHFAELQQVETVFDRAALHALGL-DAGRLQLLVHSGSRGLGQAILQ---EHVS 184
Query: 133 CMAYV-FPDALVQMEKAMKRD----NIETNDRQLACARINSKEGQDYLK------SMAAA 181
+ PD ++ + R +RQL RI + D L+ ++ AA
Sbjct: 185 LRGHAGLPDGSLEAAAYLARHAEALRFAEGNRQLIARRILERLRCDGLELLDVNHNLVAA 244
Query: 182 ANF----AWVNRSSMT 193
A W+ R T
Sbjct: 245 AQVDGVHGWLQRKGAT 260
>gi|300815379|ref|ZP_07095604.1| putative protein RtcB [Escherichia coli MS 107-1]
gi|300907434|ref|ZP_07125081.1| putative protein RtcB [Escherichia coli MS 84-1]
gi|301302301|ref|ZP_07208433.1| putative protein RtcB [Escherichia coli MS 124-1]
gi|307311915|ref|ZP_07591553.1| protein of unknown function UPF0027 [Escherichia coli W]
gi|378711154|ref|YP_005276047.1| hypothetical protein [Escherichia coli KO11FL]
gi|386610781|ref|YP_006126267.1| hypothetical protein ECW_m3678 [Escherichia coli W]
gi|386699638|ref|YP_006163475.1| hypothetical protein KO11_05680 [Escherichia coli KO11FL]
gi|386711300|ref|YP_006175021.1| hypothetical protein WFL_17970 [Escherichia coli W]
gi|415863052|ref|ZP_11536413.1| putative protein RtcB [Escherichia coli MS 85-1]
gi|415874472|ref|ZP_11541470.1| protein RtcB [Escherichia coli MS 79-10]
gi|417240595|ref|ZP_12036785.1| protein RtcB [Escherichia coli 9.0111]
gi|417610053|ref|ZP_12260550.1| hypothetical protein ECSTECDG1313_4478 [Escherichia coli
STEC_DG131-3]
gi|417641327|ref|ZP_12291457.1| hypothetical protein ECTX1999_4051 [Escherichia coli TX1999]
gi|419172258|ref|ZP_13716137.1| RNA-splicing ligase RtcB [Escherichia coli DEC7A]
gi|419182821|ref|ZP_13726430.1| hypothetical protein ECDEC7C_3997 [Escherichia coli DEC7C]
gi|419188441|ref|ZP_13731946.1| hypothetical protein ECDEC7D_4205 [Escherichia coli DEC7D]
gi|419193570|ref|ZP_13737015.1| RNA-splicing ligase RtcB [Escherichia coli DEC7E]
gi|419926799|ref|ZP_14444546.1| hypothetical protein EC5411_01278 [Escherichia coli 541-1]
gi|420387672|ref|ZP_14887011.1| RNA-splicing ligase RtcB [Escherichia coli EPECa12]
gi|425424291|ref|ZP_18805445.1| RNA-splicing ligase RtcB [Escherichia coli 0.1288]
gi|427806613|ref|ZP_18973680.1| hypothetical protein BN16_40531 [Escherichia coli chi7122]
gi|427811201|ref|ZP_18978266.1| hypothetical protein BN17_33561 [Escherichia coli]
gi|433131970|ref|ZP_20317398.1| protein rtcB [Escherichia coli KTE163]
gi|433136661|ref|ZP_20321991.1| protein rtcB [Escherichia coli KTE166]
gi|443619483|ref|YP_007383339.1| hypothetical protein APECO78_20890 [Escherichia coli APEC O78]
gi|300400849|gb|EFJ84387.1| putative protein RtcB [Escherichia coli MS 84-1]
gi|300532271|gb|EFK53333.1| putative protein RtcB [Escherichia coli MS 107-1]
gi|300842464|gb|EFK70224.1| putative protein RtcB [Escherichia coli MS 124-1]
gi|306908059|gb|EFN38559.1| protein of unknown function UPF0027 [Escherichia coli W]
gi|315062698|gb|ADT77025.1| conserved hypothetical protein [Escherichia coli W]
gi|315256013|gb|EFU35981.1| putative protein RtcB [Escherichia coli MS 85-1]
gi|323376715|gb|ADX48983.1| protein of unknown function UPF0027 [Escherichia coli KO11FL]
gi|342929999|gb|EGU98721.1| protein RtcB [Escherichia coli MS 79-10]
gi|345355087|gb|EGW87300.1| hypothetical protein ECSTECDG1313_4478 [Escherichia coli
STEC_DG131-3]
gi|345391351|gb|EGX21144.1| hypothetical protein ECTX1999_4051 [Escherichia coli TX1999]
gi|378012996|gb|EHV75923.1| RNA-splicing ligase RtcB [Escherichia coli DEC7A]
gi|378021593|gb|EHV84295.1| hypothetical protein ECDEC7C_3997 [Escherichia coli DEC7C]
gi|378025135|gb|EHV87782.1| hypothetical protein ECDEC7D_4205 [Escherichia coli DEC7D]
gi|378035949|gb|EHV98501.1| RNA-splicing ligase RtcB [Escherichia coli DEC7E]
gi|383391165|gb|AFH16123.1| hypothetical protein KO11_05680 [Escherichia coli KO11FL]
gi|383406992|gb|AFH13235.1| hypothetical protein WFL_17970 [Escherichia coli W]
gi|386212630|gb|EII23074.1| protein RtcB [Escherichia coli 9.0111]
gi|388408819|gb|EIL69151.1| hypothetical protein EC5411_01278 [Escherichia coli 541-1]
gi|391302809|gb|EIQ60659.1| RNA-splicing ligase RtcB [Escherichia coli EPECa12]
gi|408341429|gb|EKJ55882.1| RNA-splicing ligase RtcB [Escherichia coli 0.1288]
gi|412964795|emb|CCK48724.1| hypothetical protein BN16_40531 [Escherichia coli chi7122]
gi|412971380|emb|CCJ46037.1| hypothetical protein BN17_33561 [Escherichia coli]
gi|431643745|gb|ELJ11435.1| protein rtcB [Escherichia coli KTE163]
gi|431653802|gb|ELJ20879.1| protein rtcB [Escherichia coli KTE166]
gi|443423991|gb|AGC88895.1| hypothetical protein APECO78_20890 [Escherichia coli APEC O78]
Length = 408
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|157155299|ref|YP_001464880.1| RtcB protein [Escherichia coli E24377A]
gi|300926887|ref|ZP_07142654.1| putative protein RtcB [Escherichia coli MS 182-1]
gi|301329737|ref|ZP_07222476.1| putative protein RtcB [Escherichia coli MS 78-1]
gi|422960948|ref|ZP_16972141.1| protein rtcB [Escherichia coli H494]
gi|450223051|ref|ZP_21897110.1| hypothetical protein C202_16741 [Escherichia coli O08]
gi|157077329|gb|ABV17037.1| RtcB protein [Escherichia coli E24377A]
gi|300417146|gb|EFK00457.1| putative protein RtcB [Escherichia coli MS 182-1]
gi|300844152|gb|EFK71912.1| putative protein RtcB [Escherichia coli MS 78-1]
gi|371593478|gb|EHN82359.1| protein rtcB [Escherichia coli H494]
gi|449314544|gb|EMD04710.1| hypothetical protein C202_16741 [Escherichia coli O08]
Length = 408
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|417598807|ref|ZP_12249433.1| hypothetical protein EC30301_3961 [Escherichia coli 3030-1]
gi|345349396|gb|EGW81681.1| hypothetical protein EC30301_3961 [Escherichia coli 3030-1]
Length = 408
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|333915805|ref|YP_004489537.1| release factor H-coupled RctB family protein [Delftia sp. Cs1-4]
gi|333746005|gb|AEF91182.1| release factor H-coupled RctB family protein [Delftia sp. Cs1-4]
Length = 384
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 47/180 (26%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q+VD +Y+ G D +V +M+HSGSRG G + E
Sbjct: 138 LGTIGGGNHFAELQVVDTLYED------GALDRKRVHLMVHSGSRGLGGAILRAHVE--- 188
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
A D + +S YL+ AAA FA +NR+S+
Sbjct: 189 ---------------AFSHDGLAA----------SSDAATQYLRQHAAAIAFAQLNRASI 223
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGV 252
+A + + D++HN H G+ L HRK + P+ G+
Sbjct: 224 AARLLRALRTRGQA---------LLDITHN--HVIAHHWRGEDGFL--HRKGATPADQGL 270
>gi|283797691|ref|ZP_06346844.1| protein RtcB [Clostridium sp. M62/1]
gi|291074587|gb|EFE11951.1| hypothetical protein CLOM621_07726 [Clostridium sp. M62/1]
Length = 410
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 79/191 (41%), Gaps = 47/191 (24%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT--- 125
G Q+GTLG GNH+ E+Q +E G + VMIHSGSR FG V
Sbjct: 154 GYFQIGTLGGGNHFIELQEDEE---------------GYLSVMIHSGSRHFGKAVCDYFH 198
Query: 126 GKCEKITCMAYV-FPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANF 184
K ++ Y PD + +LA ++S+EG+ YL M + +F
Sbjct: 199 QKARELNARWYSQVPD-----------------EYRLAFLPLDSREGRQYLNWMQLSMDF 241
Query: 185 AWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIY----DVSHNIAKTEEHMVDGKQKTLLV 240
A NR+ M + K D+H+ + + HN A E H + + V
Sbjct: 242 AMENRAKMMLAVKAILEKWIGKYT---DLHLAFTEEINCHHNYAALENHY----GENVWV 294
Query: 241 HRKVSEPSHPG 251
HRK + + G
Sbjct: 295 HRKGATRAREG 305
>gi|332281967|ref|ZP_08394380.1| RtcB protein [Shigella sp. D9]
gi|417156560|ref|ZP_11994184.1| protein RtcB [Escherichia coli 96.0497]
gi|417583019|ref|ZP_12233819.1| hypothetical protein ECSTECB2F1_3719 [Escherichia coli STEC_B2F1]
gi|419280050|ref|ZP_13822292.1| hypothetical protein ECDEC10E_4044 [Escherichia coli DEC10E]
gi|419347160|ref|ZP_13888530.1| hypothetical protein ECDEC13A_3754 [Escherichia coli DEC13A]
gi|419351621|ref|ZP_13892951.1| hypothetical protein ECDEC13B_3599 [Escherichia coli DEC13B]
gi|419357093|ref|ZP_13898340.1| hypothetical protein ECDEC13C_4161 [Escherichia coli DEC13C]
gi|419362073|ref|ZP_13903281.1| hypothetical protein ECDEC13D_3881 [Escherichia coli DEC13D]
gi|419367119|ref|ZP_13908268.1| hypothetical protein ECDEC13E_3934 [Escherichia coli DEC13E]
gi|419371993|ref|ZP_13913102.1| RNA-splicing ligase RtcB [Escherichia coli DEC14A]
gi|419377478|ref|ZP_13918497.1| hypothetical protein ECDEC14B_4090 [Escherichia coli DEC14B]
gi|419382815|ref|ZP_13923757.1| hypothetical protein ECDEC14C_3997 [Escherichia coli DEC14C]
gi|419388115|ref|ZP_13928983.1| hypothetical protein ECDEC14D_3954 [Escherichia coli DEC14D]
gi|419806709|ref|ZP_14331805.1| hypothetical protein ECAI27_34460 [Escherichia coli AI27]
gi|419949332|ref|ZP_14465577.1| hypothetical protein ECMT8_08328 [Escherichia coli CUMT8]
gi|432482725|ref|ZP_19724675.1| protein rtcB [Escherichia coli KTE210]
gi|432766802|ref|ZP_20001217.1| protein rtcB [Escherichia coli KTE48]
gi|432965180|ref|ZP_20154104.1| protein rtcB [Escherichia coli KTE203]
gi|332104319|gb|EGJ07665.1| RtcB protein [Shigella sp. D9]
gi|345334799|gb|EGW67240.1| hypothetical protein ECSTECB2F1_3719 [Escherichia coli STEC_B2F1]
gi|378124963|gb|EHW86366.1| hypothetical protein ECDEC10E_4044 [Escherichia coli DEC10E]
gi|378183872|gb|EHX44513.1| hypothetical protein ECDEC13A_3754 [Escherichia coli DEC13A]
gi|378196581|gb|EHX57067.1| hypothetical protein ECDEC13C_4161 [Escherichia coli DEC13C]
gi|378197465|gb|EHX57946.1| hypothetical protein ECDEC13B_3599 [Escherichia coli DEC13B]
gi|378199606|gb|EHX60067.1| hypothetical protein ECDEC13D_3881 [Escherichia coli DEC13D]
gi|378209776|gb|EHX70143.1| hypothetical protein ECDEC13E_3934 [Escherichia coli DEC13E]
gi|378213620|gb|EHX73932.1| RNA-splicing ligase RtcB [Escherichia coli DEC14A]
gi|378216191|gb|EHX76479.1| hypothetical protein ECDEC14B_4090 [Escherichia coli DEC14B]
gi|378224756|gb|EHX84957.1| hypothetical protein ECDEC14C_3997 [Escherichia coli DEC14C]
gi|378228670|gb|EHX88821.1| hypothetical protein ECDEC14D_3954 [Escherichia coli DEC14D]
gi|384470300|gb|EIE54415.1| hypothetical protein ECAI27_34460 [Escherichia coli AI27]
gi|386165310|gb|EIH31830.1| protein RtcB [Escherichia coli 96.0497]
gi|388419297|gb|EIL79044.1| hypothetical protein ECMT8_08328 [Escherichia coli CUMT8]
gi|431004341|gb|ELD19567.1| protein rtcB [Escherichia coli KTE210]
gi|431307399|gb|ELF95691.1| protein rtcB [Escherichia coli KTE48]
gi|431477295|gb|ELH57065.1| protein rtcB [Escherichia coli KTE203]
Length = 408
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T F D L Q E
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT-----------YFID-LAQKE---M 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|89093038|ref|ZP_01165989.1| hypothetical protein MED92_03138 [Neptuniibacter caesariensis]
gi|89082688|gb|EAR61909.1| hypothetical protein MED92_03138 [Oceanospirillum sp. MED92]
Length = 390
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 44/180 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
GT+G GNH+AE Q++D++ D + +GI D +V +++HSGSRG G ++ T E I+
Sbjct: 133 FGTIGGGNHFAEFQVIDQVEDSAKLAALGI-DAKKVLLLVHSGSRGLGQKILT---EHIS 188
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+ L+ +A DYL + A +A +NR
Sbjct: 189 FFNH---QGLLAETQAF----------------------HDYLTAHNEALRWAELNRE-- 221
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHN-IAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
F+ ++ F K + + +I D++HN ++KTE G+ L HRK S P+ G
Sbjct: 222 -FIAKR-FLKAIRESGE-----LILDINHNLVSKTE---CGGEPAWL--HRKGSTPADQG 269
>gi|253987920|ref|YP_003039276.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|211638711|emb|CAR67329.1| Hypothetical protein rtcb [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779370|emb|CAQ82531.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 408
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 43/191 (22%)
Query: 66 KKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVAT 125
K LGTLG GNH+ E + +++ QV VM+HSGSRG G+ +
Sbjct: 157 KTNNYQHLGTLGTGNHFIE---------------LCLDESDQVWVMLHSGSRGVGNAIGN 201
Query: 126 GKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFA 185
+F + ++ MK+ DR LA S+ DY++++ A NFA
Sbjct: 202 -----------LF---ITLAQQDMKQHITNLPDRNLAYFEEGSRHFADYMEAVGWAQNFA 247
Query: 186 WVNRSSMTFLCRQAFA----KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVH 241
NR M A A K F + ++ H HN + E+H + +LV
Sbjct: 248 RHNREVMMKHTLTALATVITKPFTAMAEAVNCH------HNYVQQEQHF----GQNVLVT 297
Query: 242 RKVSEPSHPGV 252
RK + +H GV
Sbjct: 298 RKGAVAAHKGV 308
>gi|452877240|ref|ZP_21954546.1| hypothetical protein G039_08872 [Pseudomonas aeruginosa VRFPA01]
gi|452185996|gb|EME13014.1| hypothetical protein G039_08872 [Pseudomonas aeruginosa VRFPA01]
Length = 379
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + E ++
Sbjct: 129 LGTIGGGNHFAELQQVETVFDRAALHALGL-DAGRLQLLVHSGSRGLGQAILQ---EHVS 184
Query: 133 CMAYV-FPDALVQMEKAMKRD----NIETNDRQLACARINSKEGQDYLK------SMAAA 181
+ PD ++ + R +RQL RI + D L+ ++ AA
Sbjct: 185 LHGHAGLPDGSLEAAAYLARHAEALRFAEGNRQLIARRILERLRCDGLELLDVNHNLVAA 244
Query: 182 ANF----AWVNRSSMT 193
A W+ R T
Sbjct: 245 AQVDGVHGWLQRKGAT 260
>gi|381159470|ref|ZP_09868702.1| release factor H-coupled RctB family protein [Thiorhodovibrio sp.
970]
gi|380877534|gb|EIC19626.1| release factor H-coupled RctB family protein [Thiorhodovibrio sp.
970]
Length = 410
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 44/180 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AEIQ V E+ D A + + + D ++ +++HSGSRG G V
Sbjct: 131 LGTIGGGNHFAEIQAVAEVLDATAFAALNL-DPERLLLLVHSGSRGLGESVL-------- 181
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQ-LACARINSKEGQDYLKSMAAAANFAWVNRSS 191
R I+ + Q LA A + +DYL++ A ++A NR
Sbjct: 182 ------------------RAVIDQHGHQGLAPA---ATAARDYLQAHDHAVHWAEANRRL 220
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ A +D + DV HN+ + +D +TL +HRK + P+ G
Sbjct: 221 IATRLLNALG---------MDAERLLDVWHNLVQP----IDWAGETLWLHRKGAAPADRG 267
>gi|291301909|ref|YP_003513187.1| hypothetical protein Snas_4449 [Stackebrandtia nassauensis DSM
44728]
gi|290571129|gb|ADD44094.1| protein of unknown function UPF0027 [Stackebrandtia nassauensis DSM
44728]
Length = 395
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 39/183 (21%)
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V+ K R + QLGTLG GNH+ E+ + D+ GQV +M+HSGSR G
Sbjct: 143 VARSLKGRSMQQLGTLGGGNHFIEVCLSDD---------------GQVWLMLHSGSRNVG 187
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
+++A EK + + N + D LA ++ Y + +
Sbjct: 188 NKLAEFHIEKAKALPH----------------NADLPDPDLAVFVNDTPTMDAYRRDLFW 231
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A +A NR+ M L R+ K+F D ++ HN E H DG + +LV
Sbjct: 232 AQEYARRNRAVMMALLREVVRKKFKKVSFDEEI----SCHHNYVAEEVH--DGHE--VLV 283
Query: 241 HRK 243
RK
Sbjct: 284 TRK 286
>gi|56752795|gb|AAW24609.1| SJCHGC04957 protein [Schistosoma japonicum]
Length = 161
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 31/42 (73%), Gaps = 4/42 (9%)
Query: 213 MHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHP 250
M +IYDVSHNIAK EEH VDGK KTLLVHRK S P HP
Sbjct: 1 MQIIYDVSHNIAKVEEHWVDGKIKTLLVHRKGSTRAFPPHHP 42
>gi|432807652|ref|ZP_20041566.1| protein rtcB [Escherichia coli KTE91]
gi|432930774|ref|ZP_20131182.1| protein rtcB [Escherichia coli KTE184]
gi|433195445|ref|ZP_20379420.1| protein rtcB [Escherichia coli KTE90]
gi|431353093|gb|ELG39851.1| protein rtcB [Escherichia coli KTE91]
gi|431460825|gb|ELH41110.1| protein rtcB [Escherichia coli KTE184]
gi|431713517|gb|ELJ77751.1| protein rtcB [Escherichia coli KTE90]
Length = 377
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 268 QQQTLAMEEI-NCHHNYVQKEQHF 290
>gi|217970532|ref|YP_002355766.1| hypothetical protein Tmz1t_2130 [Thauera sp. MZ1T]
gi|217507859|gb|ACK54870.1| protein of unknown function UPF0027 [Thauera sp. MZ1T]
Length = 398
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 38/161 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GTLG GNH+ E+ + ++ QV VM+HSGSRG G+ +AT E
Sbjct: 154 QMGTLGGGNHFIEVCL---------------DEHEQVWVMLHSGSRGIGNAIATYFIE-- 196
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
K M R I DR LA S+ DY++++ A +A NR +
Sbjct: 197 ------------LARKDMARHMIHLPDRDLAYFAEGSEHFADYVEAVHWAQEYAMANRQA 244
Query: 192 MTFLCRQAFAKQ---FNTTPDDLDMHVIYDVSHNIAKTEEH 229
M L A+ F T + ++ H HN E H
Sbjct: 245 MLDLVLTGLARHLPPFTVTTEAVNCH------HNYVAREHH 279
>gi|24114686|ref|NP_709196.1| hypothetical protein SF3443 [Shigella flexneri 2a str. 301]
gi|30065296|ref|NP_839467.1| hypothetical protein S4321 [Shigella flexneri 2a str. 2457T]
gi|384544987|ref|YP_005729051.1| hypothetical protein SFxv_3759 [Shigella flexneri 2002017]
gi|415858767|ref|ZP_11533219.1| uncharacterized family UPF0027 family protein [Shigella flexneri 2a
str. 2457T]
gi|417704763|ref|ZP_12353856.1| hypothetical protein SFK218_5283 [Shigella flexneri K-218]
gi|417725879|ref|ZP_12374658.1| hypothetical protein SFK304_5071 [Shigella flexneri K-304]
gi|417731094|ref|ZP_12379773.1| hypothetical protein SFK671_4823 [Shigella flexneri K-671]
gi|417736028|ref|ZP_12384663.1| hypothetical protein SF274771_4844 [Shigella flexneri 2747-71]
gi|417740966|ref|ZP_12389531.1| hypothetical protein SF434370_4386 [Shigella flexneri 4343-70]
gi|417746013|ref|ZP_12394529.1| conserved protein [Shigella flexneri 2930-71]
gi|418260180|ref|ZP_12882788.1| hypothetical protein SF660363_4699 [Shigella flexneri 6603-63]
gi|420344530|ref|ZP_14845986.1| RNA-splicing ligase RtcB [Shigella flexneri K-404]
gi|24053896|gb|AAN44903.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30043558|gb|AAP19278.1| hypothetical protein S4321 [Shigella flexneri 2a str. 2457T]
gi|281602774|gb|ADA75758.1| hypothetical protein SFxv_3759 [Shigella flexneri 2002017]
gi|313647277|gb|EFS11729.1| uncharacterized family UPF0027 family protein [Shigella flexneri 2a
str. 2457T]
gi|332749477|gb|EGJ79894.1| hypothetical protein SFK671_4823 [Shigella flexneri K-671]
gi|332750323|gb|EGJ80734.1| hypothetical protein SF434370_4386 [Shigella flexneri 4343-70]
gi|332751224|gb|EGJ81627.1| hypothetical protein SF274771_4844 [Shigella flexneri 2747-71]
gi|332763592|gb|EGJ93831.1| conserved protein [Shigella flexneri 2930-71]
gi|332997287|gb|EGK16903.1| hypothetical protein SFK218_5283 [Shigella flexneri K-218]
gi|333012472|gb|EGK31853.1| hypothetical protein SFK304_5071 [Shigella flexneri K-304]
gi|391261215|gb|EIQ20264.1| RNA-splicing ligase RtcB [Shigella flexneri K-404]
gi|397893711|gb|EJL10166.1| hypothetical protein SF660363_4699 [Shigella flexneri 6603-63]
Length = 408
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 52/202 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T + + +
Sbjct: 173 ----------CLDESEQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEE 228
P L M I + HN + E+
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQ 288
>gi|417715123|ref|ZP_12364067.1| hypothetical protein SFK272_4930 [Shigella flexneri K-272]
gi|332996628|gb|EGK16253.1| hypothetical protein SFK272_4930 [Shigella flexneri K-272]
Length = 408
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSR G+ + T + + +
Sbjct: 173 ----------CLDESEQVWIMLHSGSREIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|51892465|ref|YP_075156.1| hypothetical protein STH1327 [Symbiobacterium thermophilum IAM
14863]
gi|51856154|dbj|BAD40312.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 445
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 28/180 (15%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGT+GAGNHY + I+ E+ + W I D V V +H GSRGFGH+ A+G
Sbjct: 166 QLGTVGAGNHY--VDIMAEVPEGWQLGDP-IADDAPVWVAVHFGSRGFGHRTASGFLNLA 222
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+ DA E + + D +L GQ Y+ +M A +A+ R
Sbjct: 223 AGRPW---DAGAPGESMDQPPTLIPADSEL---------GQAYIAAMKLAGRYAYAGRDY 270
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ + + T + HN A EEH G K ++ RK + P PG
Sbjct: 271 VVDQVLRILGARPTFTVHN---------HHNFAWFEEH---GGVKGWVI-RKGATPLFPG 317
>gi|115372288|ref|ZP_01459598.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|310817389|ref|YP_003949747.1| hypothetical protein STAUR_0111 [Stigmatella aurantiaca DW4/3-1]
gi|115370753|gb|EAU69678.1| RtcB protein [Stigmatella aurantiaca DW4/3-1]
gi|309390461|gb|ADO67920.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 450
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 37/156 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLG+LG GNH+ E+Q+ +E G+V VM+H+GSRGFG +A
Sbjct: 194 QLGSLGGGNHFTEMQVDEE---------------GRVWVMLHTGSRGFGWNIAK------ 232
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+ F V+ +A+ + + +K G++Y AANFA NR
Sbjct: 233 ----HFF----VEGARAL---GLSSRSEDFIWLDAETKLGREYWNLHNMAANFAVANRLI 281
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
+ A + F T D + Y++SHN+ + E
Sbjct: 282 IGEAVCAALEEVFGGTAD-----IYYEISHNLIQKE 312
>gi|406998364|gb|EKE16298.1| hypothetical protein ACD_11C00020G0003 [uncultured bacterium]
Length = 499
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 53 MLNADPSKVSMRAKKRGLPQLGTLGA-GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 111
+L+A PS K R LG LGA GNH+ ++ + EI DK A K GI++ GQ +
Sbjct: 181 ILDAVPSLFFHIGKYR----LGILGAAGNHFLDLMKITEIRDKDIAEKFGIKE-GQYIFL 235
Query: 112 IHSGSRGFGHQVATGKCEK---------ITCMAYVFPDALVQ--MEKAMKRDNIETNDRQ 160
+H+GS G + K I + F ++ + K K+ N +
Sbjct: 236 LHTGSGLLGQYASYMYTPKKKEHLSQQIILKLGTFFFNSQKKKIYSKIAKQIEEYKNKEE 295
Query: 161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS 220
+ NS EG+ + + AAANF + NR+ +T A K + +LD+ +YD +
Sbjct: 296 FIGYKDNSLEGKMFFTAHRAAANFGFANRTVLTHHLDNAIEKVLGKSA-ELDL--LYDNT 352
Query: 221 HNIAKTEEHM 230
H + E H
Sbjct: 353 HISIEKERHF 362
>gi|223935757|ref|ZP_03627673.1| release factor H-coupled RctB family protein [bacterium Ellin514]
gi|223895765|gb|EEF62210.1| release factor H-coupled RctB family protein [bacterium Ellin514]
Length = 374
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 42/180 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
LGT+G GNH+AE+Q V+++ D+ +K+ + ++ +++HSGSRG G +
Sbjct: 124 SLGTIGGGNHFAELQAVEKVEDETEFAKLNLSKE-KLMLLVHSGSRGLGESI-------- 174
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
AYV + + A + S + +DYL+ A +A NRS
Sbjct: 175 -LRAYV-------------------DQHRDAGVAVESTDAKDYLQKHDEAVRWAKANRS- 213
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L FA N ++ + D SHN H + G +T+ +HRK + P+ G
Sbjct: 214 ---LIAHRFASVLNAACEN-----VVDGSHN--SITRHELAG--ETVWLHRKGAAPAETG 261
>gi|421448348|ref|ZP_15897741.1| hypothetical protein SEEE6482_07366 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396073002|gb|EJI81308.1| hypothetical protein SEEE6482_07366 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
Length = 404
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 89/222 (40%), Gaps = 55/222 (24%)
Query: 9 VGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKR 68
VG+ G P N + LE G W ++Y R LN + K
Sbjct: 120 VGAWGNPPANVDEKWAQLEAGYQWL-------------TQKYPRFLNTNSYK-------- 158
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
LGTLG GNH+ EI +DE W +M+HSGSRG G+ + T
Sbjct: 159 ---HLGTLGTGNHFIEI-CLDETDRVW--------------IMLHSGSRGIGNAIGT--- 197
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+ L Q E + + + + D LA S+ DYLK++ A FA +N
Sbjct: 198 ---------YFIGLAQQEMQEQLETLPSRD--LAYFNEGSEYFDDYLKAVHWAQQFASLN 246
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
R +M A + + LDM I + HN A+ E+H
Sbjct: 247 REAMMENALAALQRCVEKSI-VLDMDEI-NCHHNYAQKEQHF 286
>gi|313107230|ref|ZP_07793429.1| hypothetical protein PA39016_000880044 [Pseudomonas aeruginosa
39016]
gi|386063968|ref|YP_005979272.1| hypothetical protein NCGM2_1011 [Pseudomonas aeruginosa NCGM2.S1]
gi|310879931|gb|EFQ38525.1| hypothetical protein PA39016_000880044 [Pseudomonas aeruginosa
39016]
gi|348032527|dbj|BAK87887.1| hypothetical protein NCGM2_1011 [Pseudomonas aeruginosa NCGM2.S1]
Length = 404
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ R L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWRALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRYFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|229113350|ref|ZP_04242809.1| hypothetical protein bcere0018_55290 [Bacillus cereus Rock1-15]
gi|228670114|gb|EEL25498.1| hypothetical protein bcere0018_55290 [Bacillus cereus Rock1-15]
Length = 319
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 43 DKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI 102
DKEH + +M++ D + + R +GTLG GNH+ E +
Sbjct: 34 DKEH--RFSKMIDFDSVRAPFTLQ-RAQKSIGTLGGGNHFVE---------------LNE 75
Query: 103 EDVGQVCVMIHSGSRGFGHQVA----TGKCEKITCMAYVFPDALVQMEKAMKRDNIETND 158
+D G V ++IHSGSR G QVA E++ + + + + ++ K ++ I
Sbjct: 76 DDKGNVYIVIHSGSRNLGKQVAEYYQNFAYEQLINVKSIKEEIIERLTKEGRQQEIHEAL 135
Query: 159 RQLACARINSK----EGQ---DYLKSMAAAANFAWVNRSSMT--FLCRQAF--AKQFNTT 207
R++ I + EGQ DY+ M A +A +NR +MT + + + QF T
Sbjct: 136 REIKKPVIRKELAYLEGQGFKDYMNDMKIAQKYAELNRKAMTDEIVTKMDWKVTDQFTTI 195
Query: 208 PDDLDM 213
+ +DM
Sbjct: 196 HNYIDM 201
>gi|295084035|emb|CBK65558.1| Uncharacterized conserved protein [Bacteroides xylanisolvens XB1A]
Length = 389
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 39/183 (21%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
L Q+GTLG GNH+ EIQ E D W VMIHSGSR G +VA
Sbjct: 141 LKQIGTLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVAN-HYN 185
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
KI Y +M + +ET Q+A +DY + M FA+ NR
Sbjct: 186 KIA--QYWNEKWYSEMVSGLAYLPMET---QMA---------KDYFREMNYCVAFAFANR 231
Query: 190 S-SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
MT +C A + T D + +++HN A E H + ++VHRK + +
Sbjct: 232 QLMMTRICEAIQAVKPET-----DFEPMINIAHNYAAWENHF----DQDVIVHRKGATRA 282
Query: 249 HPG 251
+ G
Sbjct: 283 YEG 285
>gi|111023828|ref|YP_706800.1| hypothetical protein RHA1_ro06876 [Rhodococcus jostii RHA1]
gi|110823358|gb|ABG98642.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 401
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 42/196 (21%)
Query: 48 EEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQ 107
+E+G + + S+ S R + Q+GTLG GNH+ E+ + D +
Sbjct: 139 QEFGDLHSGVQSRES-----RAMKQIGTLGGGNHFIEVC---------------LSDADE 178
Query: 108 VCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARIN 167
V +M+HSGSR G ++A E+ +A P N DR LA
Sbjct: 179 VWLMLHSGSRNIGKELA----ERHIAVARALP------------HNQRLVDRDLAVFLAG 222
Query: 168 SKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE 227
SKE Y + A +A NR+ + L QAF + P D + HN
Sbjct: 223 SKEMDAYRHDLTWAQEYAARNRAVILTLVMQAFRQALPGRPVRFDEPI--SCHHNY--VS 278
Query: 228 EHMVDGKQKTLLVHRK 243
E ++DG + +LV RK
Sbjct: 279 EEIIDG--EPMLVTRK 292
>gi|298481165|ref|ZP_06999359.1| protein RtcB [Bacteroides sp. D22]
gi|423213761|ref|ZP_17200290.1| hypothetical protein HMPREF1074_01822 [Bacteroides xylanisolvens
CL03T12C04]
gi|298272739|gb|EFI14306.1| protein RtcB [Bacteroides sp. D22]
gi|392693418|gb|EIY86650.1| hypothetical protein HMPREF1074_01822 [Bacteroides xylanisolvens
CL03T12C04]
Length = 389
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 39/183 (21%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
L Q+GTLG GNH+ EIQ E D W VMIHSGSR G +VA
Sbjct: 141 LKQIGTLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVAN-HYN 185
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
KI Y +M + +ET Q+A +DY + M FA+ NR
Sbjct: 186 KIA--QYWNEKWYSEMVSGLAYLPMET---QMA---------KDYFREMNYCVAFAFANR 231
Query: 190 S-SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
MT +C A + T D + +++HN A E H + ++VHRK + +
Sbjct: 232 QLMMTRICEAIQAVKPET-----DFEPMINIAHNYAAWENHF----DQDVIVHRKGATRA 282
Query: 249 HPG 251
+ G
Sbjct: 283 YEG 285
>gi|336401990|ref|ZP_08582735.1| hypothetical protein HMPREF0127_00048 [Bacteroides sp. 1_1_30]
gi|335948712|gb|EGN10414.1| hypothetical protein HMPREF0127_00048 [Bacteroides sp. 1_1_30]
Length = 389
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 39/183 (21%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
L Q+GTLG GNH+ EIQ E D W VMIHSGSR G +VA
Sbjct: 141 LKQIGTLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVAN-HYN 185
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
KI Y +M + +ET Q+A +DY + M FA+ NR
Sbjct: 186 KIA--QYWNEKWYSEMVSGLAYLPMET---QMA---------KDYFREMNYCVAFAFANR 231
Query: 190 S-SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
MT +C A + T D + +++HN A E H + ++VHRK + +
Sbjct: 232 QLMMTRICEAIQAVKPET-----DFEPMINIAHNYAAWENHF----DQDVIVHRKGATRA 282
Query: 249 HPG 251
+ G
Sbjct: 283 YEG 285
>gi|365960566|ref|YP_004942133.1| hypothetical protein FCOL_07605 [Flavobacterium columnare ATCC
49512]
gi|365737247|gb|AEW86340.1| hypothetical protein FCOL_07605 [Flavobacterium columnare ATCC
49512]
Length = 463
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 39/183 (21%)
Query: 72 QLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQ-VCVMIHSGSRGFGHQVATGKC 128
QLGT G GNH+ EI IV D ++W D G+ V V+ HSGSRG G +A
Sbjct: 215 QLGTSGGGNHFVEIGIVKIDTPMNEWKL------DAGEYVAVLSHSGSRGLGANIAK--- 265
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
Y + A K+ + N + LA IN+ +GQ+Y +M A +A
Sbjct: 266 ------HYTY--------LATKQCPLPKNVQHLAWLDINTHDGQEYWMAMNLAGEYAKAC 311
Query: 189 RSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
+ +A K+ T ++ HN A E MV+G++ +VHRK + P+
Sbjct: 312 HEDIHKRIAKAIGKRVLVTIEN---------HHNFAWKE--MVNGQE--CIVHRKGATPA 358
Query: 249 HPG 251
G
Sbjct: 359 AKG 361
>gi|416344307|ref|ZP_11678181.1| Protein RtcB [Escherichia coli EC4100B]
gi|320199594|gb|EFW74184.1| Protein RtcB [Escherichia coli EC4100B]
Length = 458
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 51/201 (25%)
Query: 34 LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD 93
L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 123 LEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI-------- 158
Query: 94 KWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN 153
+++ QV +M+HSGSRG G+ + T + + + +D
Sbjct: 159 -------CLDESDQVWIMLHSGSRGIGNAIGT---------------YFIDLAQKEMQDQ 196
Query: 154 IET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTTPD 209
+ET R LA ++ DYLK++A A FA +NR +M Q+ ++
Sbjct: 197 LETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVTQKTVRQQQ 256
Query: 210 DLDMHVIYDVSHNIAKTEEHM 230
L M I + HN + E+H
Sbjct: 257 TLAMEEI-NCHHNYVQKEQHF 276
>gi|406896722|gb|EKD40901.1| hypothetical protein ACD_74C00133G0003 [uncultured bacterium]
Length = 397
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
L Q+GTLG GNH+ EIQ + G V +MIHSGSR G +VA
Sbjct: 148 LKQIGTLGGGNHFIEIQQGSD---------------GFVWLMIHSGSRNIGFKVAR---- 188
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
Y A+ E+ + ++ N +LA + ++EGQ YL+ M +FA +R
Sbjct: 189 ------YYNELAITLNERW--QVSVPKN-WELAFLPLETEEGQAYLEEMQYCVDFALASR 239
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
M + A D++ + +++HN A E H + +++HRK + ++
Sbjct: 240 RLMMKRAKACLADVVG----DVEFGGLINIAHNYAALEHHF----KTNVMIHRKGATKAY 291
Query: 250 PG 251
G
Sbjct: 292 NG 293
>gi|365838148|ref|ZP_09379499.1| release factor H-coupled RctB family protein [Hafnia alvei ATCC
51873]
gi|364560328|gb|EHM38268.1| release factor H-coupled RctB family protein [Hafnia alvei ATCC
51873]
Length = 370
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 52/183 (28%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE VDEI+ AA D ++ +++HSGSRG G +
Sbjct: 125 LGTIGGGNHFAEFLQVDEIFTPLAAL-----DKKRLILLVHSGSRGLGQAI--------- 170
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARI--NSKEGQDYLKSMAAAANFAWVNRS 190
+E + RQ + +S E DYL+ A +FA NR
Sbjct: 171 ---------------------LEAHIRQFGHHGLEQDSPEASDYLRQHQHALDFAACNRH 209
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHN-IAKTEEHMVDGKQKTLLVHRKVSEPSH 249
F+ R+ + D + D++HN + K + VDG +HRK + PS+
Sbjct: 210 ---FIARRMLERLRT------DGEQLLDIAHNFLEKASINGVDG-----WLHRKGATPSN 255
Query: 250 PGV 252
G+
Sbjct: 256 RGL 258
>gi|392987196|ref|YP_006485783.1| hypothetical protein PADK2_29100 [Pseudomonas aeruginosa DK2]
gi|419757326|ref|ZP_14283670.1| hypothetical protein CF510_30502 [Pseudomonas aeruginosa
PADK2_CF510]
gi|384396367|gb|EIE42786.1| hypothetical protein CF510_30502 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392322701|gb|AFM68081.1| hypothetical protein PADK2_29100 [Pseudomonas aeruginosa DK2]
Length = 379
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 42/180 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + E+++
Sbjct: 129 LGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQ---EQVS 184
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+ A S E YL A A FA NR
Sbjct: 185 LHGH-------------------------AGLLDGSLEASAYLARHADALRFAEGNRQ-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGV 252
+ R+ + D L++ D++HN+ + VDG L HRK + P+ GV
Sbjct: 218 -LIARRILER---LRCDGLEL---LDINHNLVAPAQ--VDGVDGWL--HRKGATPADQGV 266
>gi|441505325|ref|ZP_20987312.1| Protein RtcB [Photobacterium sp. AK15]
gi|441426968|gb|ELR64443.1| Protein RtcB [Photobacterium sp. AK15]
Length = 380
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 5/62 (8%)
Query: 73 LGTLGAGNHYAEIQIVDEIY--DKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEK 130
LGT+G GNH+AE+Q+VDE+Y ++ AA + ++ +C+++HSGSRG G Q+ +K
Sbjct: 133 LGTIGGGNHFAELQMVDEVYMPEQLAAVNLSVK---HLCLLVHSGSRGLGEQILRQHVDK 189
Query: 131 IT 132
+
Sbjct: 190 YS 191
>gi|381169383|ref|ZP_09878551.1| conserved hypothetical protein [Phaeospirillum molischianum DSM
120]
gi|380681661|emb|CCG43373.1| conserved hypothetical protein [Phaeospirillum molischianum DSM
120]
Length = 358
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 78/187 (41%), Gaps = 43/187 (22%)
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS + L QLG+LG+GNH+ EI G++D QV ++IHSGSR G
Sbjct: 102 VSQQITDGALKQLGSLGSGNHFIEI---------------GVDDFRQVWIIIHSGSRNVG 146
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACA-RINSKEGQDYLKSMA 179
H+ AT MK + + R+ R++S EGQDY+ +
Sbjct: 147 HKTAT---------------------HYMKLASGDGKAREAHFGLRVDSPEGQDYITDLN 185
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQ---K 236
FA NR + ++F D D + + +HN A+ +G K
Sbjct: 186 FCLEFALANRREIANRV-AGVIREFTGAVPDWDR--LVNRNHNHAELRWMAHNGPTRDMK 242
Query: 237 TLLVHRK 243
+ VHRK
Sbjct: 243 AVWVHRK 249
>gi|406997985|gb|EKE15963.1| RtcB-like protein 2, partial [uncultured bacterium]
Length = 342
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 53 MLNADPSKVSMRAKKRGLPQLGTLGA-GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 111
+L+A PS K R LG LGA GNH+ ++ + EI +K A K GI++ GQ +
Sbjct: 123 VLDAVPSLFFHIGKYR----LGILGAAGNHFLDLMKITEIKNKDVAEKFGIKE-GQYIFL 177
Query: 112 IHSGSRGFGHQVATGKCEK---------ITCMAYVFPDA---LVQMEKAMKRDNIETNDR 159
+H+GS G + K + + +F D+ + + A K + D
Sbjct: 178 MHTGSGLLGQYASYMYTPKRKEHLSQWIVLKLGTLFFDSQKKRIYSKVAEKLKEYKDKDE 237
Query: 160 QLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDV 219
L S EG+ +L + +ANF + NRS +T QA K P +LD+ +YD
Sbjct: 238 FLGYDD-KSLEGEMFLTAHRTSANFGFANRSVLTHQLDQALEKVLG-KPAELDL--LYDN 293
Query: 220 SHNIAKTEEHM 230
+H + E H
Sbjct: 294 THISIEREHHF 304
>gi|375135919|ref|YP_004996569.1| hypothetical protein BDGL_002301 [Acinetobacter calcoaceticus
PHEA-2]
gi|325123364|gb|ADY82887.1| hypothetical protein BDGL_002301 [Acinetobacter calcoaceticus
PHEA-2]
Length = 401
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 42/175 (24%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGTLG GNH+ E+ +DE D W VM+HSGSRG G+ + T E
Sbjct: 157 QLGTLGGGNHFIEL-CIDENQDVW--------------VMLHSGSRGLGNVIGTYFIE-- 199
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
L + E + ++ D+ L+ SK DY++ + A +A+ NR
Sbjct: 200 ----------LAKKEAQHRFGHVP--DKDLSYFAEGSKSFDDYVEGVEWAQEYAFENRKE 247
Query: 192 MTFLCRQA---FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M L +A F TT + ++ H HN E H + LL+ RK
Sbjct: 248 MMRLILEAIRPLLPSFQTTKEAINCH------HNYVSRETHF----GENLLITRK 292
>gi|107104574|ref|ZP_01368492.1| hypothetical protein PaerPA_01005653 [Pseudomonas aeruginosa PACS2]
gi|218894573|ref|YP_002443443.1| hypothetical protein PLES_58661 [Pseudomonas aeruginosa LESB58]
gi|254243023|ref|ZP_04936345.1| hypothetical protein PA2G_03811 [Pseudomonas aeruginosa 2192]
gi|386061649|ref|YP_005978171.1| hypothetical protein PAM18_5592 [Pseudomonas aeruginosa M18]
gi|420142639|ref|ZP_14650230.1| hypothetical protein PACIG1_5750 [Pseudomonas aeruginosa CIG1]
gi|421183599|ref|ZP_15641048.1| hypothetical protein PAE2_5542 [Pseudomonas aeruginosa E2]
gi|424943722|ref|ZP_18359485.1| hypothetical protein NCGM1179_4913 [Pseudomonas aeruginosa
NCMG1179]
gi|126196401|gb|EAZ60464.1| hypothetical protein PA2G_03811 [Pseudomonas aeruginosa 2192]
gi|218774802|emb|CAW30620.1| hypothetical protein PLES_58661 [Pseudomonas aeruginosa LESB58]
gi|346060168|dbj|GAA20051.1| hypothetical protein NCGM1179_4913 [Pseudomonas aeruginosa
NCMG1179]
gi|347307955|gb|AEO78069.1| hypothetical protein PAM18_5592 [Pseudomonas aeruginosa M18]
gi|403244607|gb|EJY58472.1| hypothetical protein PACIG1_5750 [Pseudomonas aeruginosa CIG1]
gi|404539693|gb|EKA49140.1| hypothetical protein PAE2_5542 [Pseudomonas aeruginosa E2]
Length = 379
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 42/180 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + E+++
Sbjct: 129 LGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQ---EQVS 184
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+ A S E YL A A FA NR
Sbjct: 185 LHGH-------------------------AGLLDGSLEASAYLARHADALRFAEGNRQ-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGV 252
+ R+ + D L++ D++HN+ + VDG L HRK + P+ GV
Sbjct: 218 -LIARRILER---LRCDGLEL---LDINHNLVAPAQ--VDGVDGWL--HRKGATPADQGV 266
>gi|432373975|ref|ZP_19617006.1| protein rtcB [Escherichia coli KTE11]
gi|430893397|gb|ELC15721.1| protein rtcB [Escherichia coli KTE11]
Length = 408
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YSRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ +V +M+HSGSRG G+ + T F D L Q E +
Sbjct: 173 ----------CLDEADRVWIMLHSGSRGIGNAIGT-----------YFID-LAQKEMQEQ 210
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
+ + + D LA ++ DYLK++A A FA +NR +M Q+ +
Sbjct: 211 LETLPSRD--LAYFLEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVSALQSITHKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E H
Sbjct: 269 PQTLAMEEI-NCHHNYVQKELHF 290
>gi|52549477|gb|AAU83326.1| conserved hypothetical protein [uncultured archaeon GZfos27E6]
Length = 194
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+++P G+G G + ++ L+E L+ G +W + GY W ED E EE G++ A+P K
Sbjct: 128 LFEYVPAGLGLSGKVRLSYSQLDEVLKGGTEWCIENGYGWEEDIERTEEGGKLKAANPEK 187
Query: 61 VSMRAKK 67
+ ++KK
Sbjct: 188 IDEKSKK 194
>gi|49477927|ref|YP_037060.1| hypothetical protein BT9727_2736 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329483|gb|AAT60129.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 395
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 43 DKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI 102
DKEH + +M++ D + + R +GTLG GNH+ E +
Sbjct: 110 DKEH--RFSKMIDFDAVRAPFTLQ-RAQKSIGTLGGGNHFVE---------------LNE 151
Query: 103 EDVGQVCVMIHSGSRGFGHQVA----TGKCEKITCMAYVFPDALVQMEKAMKRDNIETND 158
+D G V ++IHSGSR G Q+A E++ + + D + ++ + + I+ N
Sbjct: 152 DDKGNVYIVIHSGSRNLGKQIAEYYQNFAYEQLIDVTSIKDDIIKRLTEEGRAKEIQENL 211
Query: 159 RQLACARINSK----EGQ---DYLKSMAAAANFAWVNRSSM 192
R + +I + EGQ DY+ M A +A +NR +M
Sbjct: 212 RGIQKPKIRKELAYLEGQGFKDYMNDMNIAQKYAALNRKAM 252
>gi|410668692|ref|YP_006921063.1| hypothetical protein Tph_c23770 [Thermacetogenium phaeum DSM 12270]
gi|409106439|gb|AFV12564.1| hypothetical protein Tph_c23770 [Thermacetogenium phaeum DSM 12270]
Length = 413
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 34/177 (19%)
Query: 69 GLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKC 128
G Q+GTLG GNH+ EIQ ++ G+ +M+HSGSR FG+++ C
Sbjct: 156 GYYQVGTLGGGNHFIEIQ---------------EDEHGRAGLMVHSGSRNFGYKI----C 196
Query: 129 EKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVN 188
+A + M + D LA ++S+EG+ YL M A +FA N
Sbjct: 197 NHFNKVAR-------NLNARMGSPIPPSYD--LAYLPVDSREGRQYLAWMQLAQDFAKEN 247
Query: 189 RSSMTFLCRQAFAKQFNTTP--DDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
RS + ++ F+ + ++ + + HN A E H K L VHRK
Sbjct: 248 RSLIMKRVQEIFSDYLSRYAGIQEVSLEPPVNCHHNYASRERHY----GKDLWVHRK 300
>gi|410638866|ref|ZP_11349419.1| tRNA-splicing ligase RtcB [Glaciecola lipolytica E3]
gi|410141394|dbj|GAC16624.1| tRNA-splicing ligase RtcB [Glaciecola lipolytica E3]
Length = 397
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 38/181 (20%)
Query: 52 RMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 111
++L P + K+ QLGTLG+GNH+ EI +DE D W VM
Sbjct: 133 KILAKHPQISRHGSAKKFANQLGTLGSGNHFIEI-CIDENDDVW--------------VM 177
Query: 112 IHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEG 171
+HSGSRG G+ + Y A K M+ I D+ L + ++
Sbjct: 178 LHSGSRGIGNMIGQ----------YFIRLA----RKEMEIHQINLPDKDLGYLKEGTQYF 223
Query: 172 QDYLKSMAAAANFAWVNRSSMTFLCRQAFA---KQFNTTPDDLDMHVIYDVSHNIAKTEE 228
DY++++A A ++A +NR M ++ K F T + ++ H HN + E
Sbjct: 224 NDYVEAVAWAQDYALLNREHMMKAVLRSLTFRLKPFTVTKEAINCH------HNFVEKEL 277
Query: 229 H 229
H
Sbjct: 278 H 278
>gi|107099754|ref|ZP_01363672.1| hypothetical protein PaerPA_01000772 [Pseudomonas aeruginosa PACS2]
Length = 401
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 102 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 161
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 162 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 193
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA +S+ DY++++ A +FA NR+ M
Sbjct: 194 --NLFIELAKADMRQHIANLPDKDLAYFEESSRHFDDYVEAVGWAQDFARQNRALMMHAV 251
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 252 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 300
>gi|425073954|ref|ZP_18477059.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW4]
gi|404594607|gb|EKA95176.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW4]
Length = 378
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G + E+
Sbjct: 129 LGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLGQSILRAHTEQFG 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
V N+ DYL++ A N+A +NR
Sbjct: 188 HQGLV----------------------------ANTDAANDYLQAHDHALNYAKLNRH-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
L +Q +T VI DV+HN+ + E + +Q L HRK + P+H
Sbjct: 218 --LIGHRMMEQIHTQGT-----VITDVNHNLVEPCE--LYNQQGWL--HRKGATPAH 263
>gi|313111590|ref|ZP_07797389.1| hypothetical protein PA39016_003370065 [Pseudomonas aeruginosa
39016]
gi|386069133|ref|YP_005984437.1| hypothetical protein NCGM2_6248 [Pseudomonas aeruginosa NCGM2.S1]
gi|310883891|gb|EFQ42485.1| hypothetical protein PA39016_003370065 [Pseudomonas aeruginosa
39016]
gi|348037692|dbj|BAK93052.1| hypothetical protein NCGM2_6248 [Pseudomonas aeruginosa NCGM2.S1]
Length = 379
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 42/180 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + E+++
Sbjct: 129 LGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQ---EQVS 184
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+ A S E YL A A FA NR
Sbjct: 185 LHGH-------------------------AGLLDGSLEASAYLACHADALRFAEGNRQ-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGV 252
+ R+ + D L++ D++HN+ + VDG L HRK + P+ GV
Sbjct: 218 -LIARRILER---LRCDGLEL---LDINHNLVAPAQ--VDGVDGWL--HRKGATPADQGV 266
>gi|37528138|ref|NP_931483.1| protein RtcB [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36787575|emb|CAE16679.1| Protein RtcB [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 408
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 43/185 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
LGTLG GNH+ E+ +DE W VM+HSGSRG G+ +
Sbjct: 163 HLGTLGTGNHFIEL-CLDESDRVW--------------VMLHSGSRGVGNAIGN------ 201
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+F + ++ MK+ DR LA S+ DY++++ A NFA NR
Sbjct: 202 -----LF---ITLAQQDMKQHIAHLPDRNLAYFEEGSRHFADYMEAVGWAQNFARHNREV 253
Query: 192 MTFLCRQAFA----KQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEP 247
M A A K F T + ++ H HN + E+H + +LV RK +
Sbjct: 254 MMQHTLAALATVITKPFTATMEAVNCH------HNYVQQEQHF----GQNVLVTRKGAVA 303
Query: 248 SHPGV 252
+H GV
Sbjct: 304 AHRGV 308
>gi|424813509|ref|ZP_18238707.1| hypothetical protein J07AB43_03910, partial [Candidatus Nanosalina
sp. J07AB43]
gi|339758798|gb|EGQ44051.1| hypothetical protein J07AB43_03910 [Candidatus Nanosalina sp.
J07AB43]
Length = 173
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADP 58
MF IP G+G +G I + DLEE LE G DW L GY D E CEE GR L DP
Sbjct: 116 MFSKIPCGLGKEGYISTDEDDLEEILEKGADWMLENGYARESDLERCEENGR-LPGDP 172
>gi|451983758|ref|ZP_21932034.1| Protein with similarity to RtcB [Pseudomonas aeruginosa 18A]
gi|451758704|emb|CCQ84557.1| Protein with similarity to RtcB [Pseudomonas aeruginosa 18A]
Length = 379
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 44/181 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q V+ ++D+ A +G+ D G++ +++HSGSRG G + E+++
Sbjct: 129 LGTIGGGNHFAELQQVETVFDQAALHALGL-DAGRLQLLVHSGSRGLGQAILQ---EQVS 184
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
+ A S E YL A A FA NR
Sbjct: 185 LHGH-------------------------AGLLDGSLEASAYLARHADALRFAEGNRQ-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHN-IAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+ R+ + D L++ D++HN +A + VDG +HRK + P+ G
Sbjct: 218 -LIARRILER---LRCDGLEL---LDINHNLVAPVQVDGVDG-----WLHRKGATPADQG 265
Query: 252 V 252
V
Sbjct: 266 V 266
>gi|104779684|ref|YP_606182.1| hypothetical protein PSEEN0410 [Pseudomonas entomophila L48]
gi|95108671|emb|CAK13365.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 378
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 48/189 (25%)
Query: 69 GLP------QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 122
GLP LGT+G GNH+AE+Q +DE YD A + +GIE + +++HSGSRG G
Sbjct: 119 GLPATGHERSLGTIGGGNHFAELQQLDENYDDAALAALGIERK-HLLLLVHSGSRGLGEA 177
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
+ E++ + +A S+ YL A
Sbjct: 178 ILR---EQVDLFGHHGLEA-------------------------GSEASTHYLGRHDGAL 209
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHR 242
FA NR + R+ + D V+ D++HN+ + VDG L HR
Sbjct: 210 RFAEANRQ---LIARRMLDRLRA------DGDVLLDINHNLVSPAQ--VDGLDGWL--HR 256
Query: 243 KVSEPSHPG 251
K + PS G
Sbjct: 257 KGATPSDQG 265
>gi|291284759|ref|YP_003501577.1| RtcB protein [Escherichia coli O55:H7 str. CB9615]
gi|387508790|ref|YP_006161046.1| RtcB protein [Escherichia coli O55:H7 str. RM12579]
gi|416812149|ref|ZP_11890318.1| RtcB protein [Escherichia coli O55:H7 str. 3256-97]
gi|416822399|ref|ZP_11894835.1| RtcB protein [Escherichia coli O55:H7 str. USDA 5905]
gi|419116943|ref|ZP_13661953.1| hypothetical protein ECDEC5A_4144 [Escherichia coli DEC5A]
gi|419122657|ref|ZP_13667599.1| hypothetical protein ECDEC5B_4501 [Escherichia coli DEC5B]
gi|419128045|ref|ZP_13672919.1| hypothetical protein ECDEC5C_4170 [Escherichia coli DEC5C]
gi|419133510|ref|ZP_13678337.1| hypothetical protein ECDEC5D_4290 [Escherichia coli DEC5D]
gi|419138666|ref|ZP_13683456.1| RNA-splicing ligase RtcB [Escherichia coli DEC5E]
gi|425251252|ref|ZP_18644188.1| RNA-splicing ligase RtcB [Escherichia coli 5905]
gi|209756374|gb|ACI76499.1| hypothetical protein ECs4264 [Escherichia coli]
gi|290764632|gb|ADD58593.1| RtcB protein [Escherichia coli O55:H7 str. CB9615]
gi|320655706|gb|EFX23629.1| RtcB protein [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661489|gb|EFX28904.1| RtcB protein [Escherichia coli O55:H7 str. USDA 5905]
gi|374360784|gb|AEZ42491.1| RtcB protein [Escherichia coli O55:H7 str. RM12579]
gi|377958002|gb|EHV21526.1| hypothetical protein ECDEC5A_4144 [Escherichia coli DEC5A]
gi|377962725|gb|EHV26177.1| hypothetical protein ECDEC5B_4501 [Escherichia coli DEC5B]
gi|377970783|gb|EHV34141.1| hypothetical protein ECDEC5C_4170 [Escherichia coli DEC5C]
gi|377972233|gb|EHV35583.1| hypothetical protein ECDEC5D_4290 [Escherichia coli DEC5D]
gi|377980790|gb|EHV44050.1| RNA-splicing ligase RtcB [Escherichia coli DEC5E]
gi|408161886|gb|EKH89811.1| RNA-splicing ligase RtcB [Escherichia coli 5905]
Length = 408
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +M+HSGSRG G+ + T Y A +M++ ++
Sbjct: 173 ----------CLDESDQVWIMLHSGSRGIGNAIGT----------YFIDLAQKEMQETLE 212
Query: 151 RDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNTT 207
R LA ++ DYLK++A A FA +NR M Q+ ++
Sbjct: 213 ----TLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQ 268
Query: 208 PDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + +N + E+H
Sbjct: 269 PQTLAMEEI-NCHNNYVQKEQHF 290
>gi|427715974|ref|YP_007063968.1| hypothetical protein Cal7507_0645 [Calothrix sp. PCC 7507]
gi|427348410|gb|AFY31134.1| protein of unknown function UPF0027 [Calothrix sp. PCC 7507]
Length = 480
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 24/159 (15%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA---TGKCE 129
L T+G+GNH+ E+Q VD++ ++ A G+ + GQ+ MIHSGSR G + + +
Sbjct: 221 LATIGSGNHFVEVQQVDQVENRALAHAWGVRE-GQMAFMIHSGSRNVGKYIGGMWRDRSQ 279
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
+PDA + + T+ A YL++ A AAN+ +VNR
Sbjct: 280 AAWPKGLKYPDANIF--------PLSTHSHPQLVA--------SYLQAEATAANYGFVNR 323
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEE 228
+ L R + + D++ ++YD+ HNI E+
Sbjct: 324 LLLAELLRLRLREVYG----DIEAPLVYDLPHNITLPEK 358
>gi|345873041|ref|ZP_08824962.1| protein of unknown function UPF0027 [Thiorhodococcus drewsii AZ1]
gi|343917619|gb|EGV28411.1| protein of unknown function UPF0027 [Thiorhodococcus drewsii AZ1]
Length = 391
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 38/162 (23%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLG+LG GNH+ E + +++ QV +M+HSGSRG G+++ E+
Sbjct: 147 QLGSLGGGNHFIE---------------LCLDESQQVWIMLHSGSRGIGNRIGMHFIER- 190
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
++ M+R I+ D+ LA S+ DY++++ A ++A NR
Sbjct: 191 -------------AKREMERWKIQLPDQNLAYLPEGSQHFDDYVEAVGWAQDYAMENRRQ 237
Query: 192 MTFLCRQAFAKQ---FNTTPDDLDMHVIYDVSHNIAKTEEHM 230
M L +A Q F T + ++ H HN E H
Sbjct: 238 MMRLIIEALRGQLPPFEATSEAINCH------HNYVTREHHF 273
>gi|227356999|ref|ZP_03841371.1| release factor H-coupled RctB family protein [Proteus mirabilis
ATCC 29906]
gi|227162877|gb|EEI47836.1| release factor H-coupled RctB family protein [Proteus mirabilis
ATCC 29906]
Length = 382
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G + E+
Sbjct: 133 LGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLGQSILRAHTEQFG 191
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
V N+ DYL++ A N+A +NR
Sbjct: 192 HQGLV----------------------------ANTDAANDYLQAHDHALNYAKLNRH-- 221
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
L +Q +T VI DV+HN+ + E + +Q L HRK + P+H
Sbjct: 222 --LIGHRMMEQIHTQGT-----VITDVNHNLVEPCE--LYNQQGWL--HRKGATPAH 267
>gi|425070109|ref|ZP_18473223.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW6]
gi|404595902|gb|EKA96435.1| release factor H-coupled RctB family protein [Proteus mirabilis
WGLW6]
Length = 378
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G + E+
Sbjct: 129 LGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLGQSILRAHTEQFG 187
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
V N+ DYL++ A N+A +NR
Sbjct: 188 HQGLV----------------------------ANTDAANDYLQAHDHALNYAKLNRH-- 217
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
L +Q +T VI DV+HN+ + E + +Q L HRK + P+H
Sbjct: 218 --LIGHRMMEQIHTQGT-----VITDVNHNLVEPCE--LYNQQGWL--HRKGATPAH 263
>gi|383111494|ref|ZP_09932304.1| hypothetical protein BSGG_4322 [Bacteroides sp. D2]
gi|313696787|gb|EFS33622.1| hypothetical protein BSGG_4322 [Bacteroides sp. D2]
Length = 389
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 37/182 (20%)
Query: 70 LPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCE 129
L Q+GTLG GNH+ EIQ E D W VMIHSGSR G +VA +
Sbjct: 141 LKQIGTLGGGNHFIEIQKDTETSDVW--------------VMIHSGSRNIGLKVANHYNK 186
Query: 130 KITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNR 189
+ A+V LA + ++ +DY + M FA+ NR
Sbjct: 187 IAQYWNEKWYSAMVP---------------GLAYLPMETQMAKDYFREMNYCVAFAFANR 231
Query: 190 SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
M + + D + +++HN A E H + ++VHRK + ++
Sbjct: 232 QLMM----NRICESIQAVKPETDFEPMINIAHNYAAWENHF----DQDVIVHRKGATRAY 283
Query: 250 PG 251
G
Sbjct: 284 EG 285
>gi|427400217|ref|ZP_18891455.1| hypothetical protein HMPREF9710_01051 [Massilia timonae CCUG 45783]
gi|425720957|gb|EKU83872.1| hypothetical protein HMPREF9710_01051 [Massilia timonae CCUG 45783]
Length = 415
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 58/212 (27%)
Query: 40 WAEDK----EHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKW 95
WA K E C +Y ++ +A+ K LGTLG+GNH+ E+ + +E +
Sbjct: 145 WARLKNEFDEICRKYPKLRHANHYK-----------HLGTLGSGNHFVEVCLDEENF--- 190
Query: 96 AASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIE 155
V +M+HSGSRG G+ + T E + M+R +
Sbjct: 191 ------------VWLMLHSGSRGVGNAIGTHFIE--------------LARQDMRRHMVN 224
Query: 156 TNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM----TFLCRQAFAKQFNTTPDDL 211
D+ LA ++ DY++++ A FA +NR M R K F T + +
Sbjct: 225 LPDQDLAYLEEGTQHYDDYVEAVGWAQKFARINREVMMQNLIHAVRSVIKKPFETHVEAV 284
Query: 212 DMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ H HN + E H K +L+ RK
Sbjct: 285 NCH------HNYVQRERHF----GKDVLITRK 306
>gi|197287315|ref|YP_002153187.1| hypothetical protein PMI3510 [Proteus mirabilis HI4320]
gi|194684802|emb|CAR46875.1| conserved hypothetical protein [Proteus mirabilis HI4320]
Length = 382
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LG++G GNH+AE Q +D++ ++ + GI Q+ +++HSGSRG G + E+
Sbjct: 133 LGSIGGGNHFAEFQQIDQVINQALFTNSGINK-KQLLLLVHSGSRGLGQSILRAHTEQFG 191
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM 192
V N+ DYL++ A N+A +NR
Sbjct: 192 HQGLV----------------------------ANTDAANDYLQAHDHALNYAKLNRH-- 221
Query: 193 TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSH 249
L +Q +T VI DV+HN+ + E + +Q L HRK + P+H
Sbjct: 222 --LIGHRMMEQIHTQGT-----VITDVNHNLVEPCE--LYNQQGWL--HRKGATPAH 267
>gi|308067675|ref|YP_003869280.1| hypothetical protein PPE_00892 [Paenibacillus polymyxa E681]
gi|305856954|gb|ADM68742.1| UPF0027 domain containing protein [Paenibacillus polymyxa E681]
Length = 408
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 39/180 (21%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGT+G+GNH+ ++ + E GQV + H GSRGFGH+ A+G
Sbjct: 142 QLGTVGSGNHFVDVFVE--------------EATGQVWIANHFGSRGFGHKTASGFLN-- 185
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
L + + + E D+ +NS+ G Y ++M A +A+ R
Sbjct: 186 ----------LAAGREFLGKAPGEHMDQPPVLLSMNSELGNMYYRAMRLAGRYAYAGRD- 234
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
++ Q T D +H HN A E+H DG+ +V RK + PS PG
Sbjct: 235 --YVIEQVLG--IMGTEADFTVH----NHHNYAWKEQH--DGRDT--IVVRKGATPSAPG 282
>gi|451983139|ref|ZP_21931434.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Pseudomonas aeruginosa 18A]
gi|451759273|emb|CCQ83957.1| RNA-2',3'-PO4:RNA-5'-OH ligase [Pseudomonas aeruginosa 18A]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAA 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|15599779|ref|NP_253273.1| hypothetical protein PA4583 [Pseudomonas aeruginosa PAO1]
gi|418584099|ref|ZP_13148164.1| hypothetical protein O1O_05541 [Pseudomonas aeruginosa MPAO1/P1]
gi|418590152|ref|ZP_13154065.1| hypothetical protein O1Q_06127 [Pseudomonas aeruginosa MPAO1/P2]
gi|421519138|ref|ZP_15965810.1| hypothetical protein A161_22793 [Pseudomonas aeruginosa PAO579]
gi|9950831|gb|AAG07971.1|AE004872_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|375046228|gb|EHS38793.1| hypothetical protein O1O_05541 [Pseudomonas aeruginosa MPAO1/P1]
gi|375050925|gb|EHS43400.1| hypothetical protein O1Q_06127 [Pseudomonas aeruginosa MPAO1/P2]
gi|404346123|gb|EJZ72474.1| hypothetical protein A161_22793 [Pseudomonas aeruginosa PAO579]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRNFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|416862405|ref|ZP_11914987.1| hypothetical protein PA13_24110 [Pseudomonas aeruginosa 138244]
gi|334836012|gb|EGM14849.1| hypothetical protein PA13_24110 [Pseudomonas aeruginosa 138244]
gi|453046079|gb|EME93796.1| hypothetical protein H123_11165 [Pseudomonas aeruginosa PA21_ST175]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|373953877|ref|ZP_09613837.1| protein of unknown function UPF0027 [Mucilaginibacter paludis DSM
18603]
gi|373890477|gb|EHQ26374.1| protein of unknown function UPF0027 [Mucilaginibacter paludis DSM
18603]
Length = 500
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 41/198 (20%)
Query: 59 SKVSMRAKKRGLPQLGTLGAGNHY---AEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG 115
+KV K + QLGT G GNH+ E+ I D + GI + ++ HSG
Sbjct: 232 TKVIRGLKDKAYAQLGTSGTGNHFVEWGELTIADN-------ALTGIPAGRYLALLSHSG 284
Query: 116 SRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYL 175
SRGFG VA KI AM + + + LA ++ EGQ+Y
Sbjct: 285 SRGFGGSVAD-YYSKI----------------AMTKTKLPAEAKHLAWLDLDKDEGQEYW 327
Query: 176 KSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTP-DDLDMHVIYDVSHNIAKTEEHMVDGK 234
+M A +A N + A+ P ++ H HN A +EH+ DG
Sbjct: 328 IAMNLAGEYASANHHEI----HNKIARALGVKPLTRIENH------HNFA-WKEHLADGT 376
Query: 235 QKTLLVHRKVSEPSHPGV 252
+ ++VHRK + P+ GV
Sbjct: 377 E--VMVHRKGATPAGEGV 392
>gi|254244524|ref|ZP_04937846.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|386060736|ref|YP_005977258.1| hypothetical protein PAM18_4676 [Pseudomonas aeruginosa M18]
gi|420138306|ref|ZP_14646236.1| hypothetical protein PACIG1_1734 [Pseudomonas aeruginosa CIG1]
gi|421156003|ref|ZP_15615462.1| hypothetical protein PABE171_4836 [Pseudomonas aeruginosa ATCC
14886]
gi|421162954|ref|ZP_15621744.1| hypothetical protein PABE173_5277 [Pseudomonas aeruginosa ATCC
25324]
gi|421182645|ref|ZP_15640118.1| hypothetical protein PAE2_4598 [Pseudomonas aeruginosa E2]
gi|424944648|ref|ZP_18360411.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179]
gi|126197902|gb|EAZ61965.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|346061094|dbj|GAA20977.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179]
gi|347307042|gb|AEO77156.1| hypothetical protein PAM18_4676 [Pseudomonas aeruginosa M18]
gi|403248935|gb|EJY62461.1| hypothetical protein PACIG1_1734 [Pseudomonas aeruginosa CIG1]
gi|404519596|gb|EKA30330.1| hypothetical protein PABE171_4836 [Pseudomonas aeruginosa ATCC
14886]
gi|404532508|gb|EKA42389.1| hypothetical protein PABE173_5277 [Pseudomonas aeruginosa ATCC
25324]
gi|404541588|gb|EKA50941.1| hypothetical protein PAE2_4598 [Pseudomonas aeruginosa E2]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|218893678|ref|YP_002442547.1| hypothetical protein PLES_49661 [Pseudomonas aeruginosa LESB58]
gi|218773906|emb|CAW29720.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|417720078|ref|ZP_12368953.1| hypothetical protein SFK227_4902 [Shigella flexneri K-227]
gi|333013037|gb|EGK32413.1| hypothetical protein SFK227_4902 [Shigella flexneri K-227]
Length = 408
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 52/204 (25%)
Query: 32 WS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDE 90
W+ L GY W K Y R LN + K LGTLG GNH+ EI
Sbjct: 134 WAELEAGYQWLTQK-----YPRFLNTNNYK-----------HLGTLGTGNHFIEI----- 172
Query: 91 IYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMK 150
+++ QV +++HSGSR G+ + T + + +
Sbjct: 173 ----------CLDESEQVWILLHSGSREIGNAIGT---------------YFIDLAQKEM 207
Query: 151 RDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSM---TFLCRQAFAKQFNT 206
+D +ET R LA ++ DYL+++A A FA +NR +M Q+ ++
Sbjct: 208 QDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVR 267
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHM 230
P L M I + HN + E+H
Sbjct: 268 QPQTLAMEEI-NCHHNYVQKEQHF 290
>gi|116052725|ref|YP_793042.1| hypothetical protein PA14_60650 [Pseudomonas aeruginosa UCBPP-PA14]
gi|421170355|ref|ZP_15628315.1| hypothetical protein PABE177_5096 [Pseudomonas aeruginosa ATCC
700888]
gi|421176838|ref|ZP_15634497.1| hypothetical protein PACI27_5048 [Pseudomonas aeruginosa CI27]
gi|115587946|gb|ABJ13961.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|404523738|gb|EKA34137.1| hypothetical protein PABE177_5096 [Pseudomonas aeruginosa ATCC
700888]
gi|404530475|gb|EKA40475.1| hypothetical protein PACI27_5048 [Pseudomonas aeruginosa CI27]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALADRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|296391397|ref|ZP_06880872.1| hypothetical protein PaerPAb_24722 [Pseudomonas aeruginosa PAb1]
gi|355652333|ref|ZP_09056729.1| rtcB [Pseudomonas sp. 2_1_26]
gi|392986247|ref|YP_006484834.1| hypothetical protein PADK2_24345 [Pseudomonas aeruginosa DK2]
gi|416880076|ref|ZP_11921163.1| hypothetical protein PA15_23842 [Pseudomonas aeruginosa 152504]
gi|419752129|ref|ZP_14278538.1| hypothetical protein CF510_03885 [Pseudomonas aeruginosa
PADK2_CF510]
gi|334836729|gb|EGM15525.1| hypothetical protein PA15_23842 [Pseudomonas aeruginosa 152504]
gi|354824164|gb|EHF08418.1| rtcB [Pseudomonas sp. 2_1_26]
gi|384401706|gb|EIE48060.1| hypothetical protein CF510_03885 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321752|gb|AFM67132.1| hypothetical protein PADK2_24345 [Pseudomonas aeruginosa DK2]
Length = 404
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRML----NADPSKVSMRAKKRGLPQLGTLG 77
+E+A+ G + R+ W E E ++ + L A K K LGTLG
Sbjct: 105 IEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALAGRFKAITDKHPRLEKTNNRQHLGTLG 164
Query: 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYV 137
GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 165 TGNHFIEV-CLDEADRVW--------------FMLHSGSRGVGNAIG------------- 196
Query: 138 FPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLC 196
+ +++ KA R +I D+ LA S+ DY++++ A +FA NR+ M
Sbjct: 197 --NLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAV 254
Query: 197 RQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
+A A+Q P + ++ + D HN + E H + +LV RK + + G
Sbjct: 255 IEA-ARQVIRKPFEANLEAV-DCHHNYVQKERHF----GQEVLVTRKGAVSAQKG 303
>gi|434403305|ref|YP_007146190.1| hypothetical protein Cylst_1212 [Cylindrospermum stagnale PCC 7417]
gi|428257560|gb|AFZ23510.1| hypothetical protein Cylst_1212 [Cylindrospermum stagnale PCC 7417]
Length = 479
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
L T+G GNH+ E+Q VD++ ++ A G+ + GQ+ +MIHSGSR G + ++
Sbjct: 221 LATIGGGNHFVEVQRVDKVENRALAYAWGVHE-GQLALMIHSGSRNVGKYIGGMWRDQ-- 277
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEG--QDYLKSMAAAANFAWVNRS 190
KA + ++ + Q+ +S YL++ A AAN+ ++NR
Sbjct: 278 -------------AKAAWQKGLKYPESQIFPLSTHSHPELVAGYLQAEATAANYGFINRL 324
Query: 191 SMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
+ L R + + D++ ++YD+ HNI + G+ V RK + P+HP
Sbjct: 325 LLAELLRLRLREVYG----DVEAPLVYDLPHNIT-----LPFGQG---WVTRKGACPAHP 372
Query: 251 G 251
G
Sbjct: 373 G 373
>gi|386816895|ref|ZP_10104113.1| protein of unknown function UPF0027 [Thiothrix nivea DSM 5205]
gi|386421471|gb|EIJ35306.1| protein of unknown function UPF0027 [Thiothrix nivea DSM 5205]
Length = 400
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 40/164 (24%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
QLGTLG+GNH+ E+ +DE D W VM+HSGSRG G+ + EK
Sbjct: 154 QLGTLGSGNHFIEL-CIDESDDVW--------------VMLHSGSRGIGNAIGRYFIEK- 197
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+K + R+ + D+ LA ++ DY++++ A ++A NR
Sbjct: 198 -------------AKKDVGRELGQLPDKDLAYFTEGTQHFDDYVQAVGWAQDYAMTNRRE 244
Query: 192 MTFLCRQAFAK-----QFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
M L A F TT + ++ H HN + E H
Sbjct: 245 MMRLVLDALQTCQHLPTFTTTREAINCH------HNYVQQETHF 282
>gi|398861484|ref|ZP_10617112.1| hypothetical protein PMI36_05084 [Pseudomonas sp. GM79]
gi|398232906|gb|EJN18855.1| hypothetical protein PMI36_05084 [Pseudomonas sp. GM79]
Length = 408
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 37/172 (21%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGTLG GNH+ E+ +DE W M+HSGSRG G+ + T
Sbjct: 164 LGTLGTGNHFIEV-CLDETNRVW--------------FMLHSGSRGVGNAIGT------- 201
Query: 133 CMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+Q+ +A R +I DR LA + S+ DY++++ A +FA NR+
Sbjct: 202 --------LFIQLAQADMRQHIANLPDRDLAYFKEGSRHFDDYVEAVGWAQDFARQNRAL 253
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M QA A+Q P ++ + + + HN + E H + +LV RK
Sbjct: 254 MMQAVIQA-ARQVIRKPFEVALEAV-NCHHNYVQKERHF----GEDVLVTRK 299
>gi|77458173|ref|YP_347678.1| hypothetical protein Pfl01_1946 [Pseudomonas fluorescens Pf0-1]
gi|77382176|gb|ABA73689.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 409
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 98/240 (40%), Gaps = 47/240 (19%)
Query: 15 IPMNARDLEEALEMGM------DWSLREGYIWAEDKEHCEEYGRMLN----ADPSKVSMR 64
+P N L A+E + S R+ W E + ++ LN A K
Sbjct: 97 LPDNLHGLRSAIEQAVPHGRSSTRSRRDKGAWDEIPQQADQAWAALNPRFKAITDKYPKL 156
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVA 124
A LGTLG+GNH+ E+ +DE W M+HSGSRG G+ +
Sbjct: 157 ANTNNRGHLGTLGSGNHFIEV-CLDEANRVW--------------FMLHSGSRGVGNAIG 201
Query: 125 TGKCEKITCMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAAN 183
+ +QM +A R +I DR LA S+ DY++++ A +
Sbjct: 202 ---------------NLFIQMAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAVGWAQD 246
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
FA NR+ M QA +Q P ++ + + + HN + E H + +LV RK
Sbjct: 247 FAKQNRALMMQAVIQA-TRQIIRKPFEVALEAV-NCHHNYVQKERHF----GEDILVTRK 300
>gi|445494165|ref|ZP_21461209.1| protein RtcB [Janthinobacterium sp. HH01]
gi|444790326|gb|ELX11873.1| protein RtcB [Janthinobacterium sp. HH01]
Length = 411
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 43/176 (24%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
LGTLG+GNH+ EI +++ G V M+HSGSRG G+ + T E
Sbjct: 166 HLGTLGSGNHFIEI---------------CLDEAGAVWFMLHSGSRGVGNAIGTYFIE-- 208
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+K M+ I D+ LA ++ DY++++ A FA NR
Sbjct: 209 ------------LAKKDMRTHFINLPDQDLAYLAEGTQHYNDYIEAVGWAQKFARTNREV 256
Query: 192 MTF----LCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M R AK F T + ++ H HN + E H K +L+ RK
Sbjct: 257 MMHNLIAAVRTVIAKPFETHVEAVNCH------HNYVQQERHF----GKDVLITRK 302
>gi|162455438|ref|YP_001617805.1| rtcb protein [Sorangium cellulosum So ce56]
gi|161166020|emb|CAN97325.1| rtcb protein [Sorangium cellulosum So ce56]
Length = 408
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 34/172 (19%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
LGTLG GNH+ E+ +DE ED +V VM+HSGSRG G++V + E
Sbjct: 162 HLGTLGTGNHFIEL-CLDE------------ED--RVWVMLHSGSRGVGNRVGSYFIE-- 204
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
L + E M+R I D LA ++ DY+++++ A +FA VNR
Sbjct: 205 ----------LAKQE--MRRFFINLPDADLAYLPDGTRHFHDYMQAVSWAQDFAAVNREL 252
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
M +A P D + + + HN E H K +LV RK
Sbjct: 253 MMAQVVEALRGSGELPPFDATVEAV-NCHHNYVAREHHY----GKDVLVTRK 299
>gi|344340957|ref|ZP_08771880.1| protein of unknown function UPF0027 [Thiocapsa marina 5811]
gi|343799202|gb|EGV17153.1| protein of unknown function UPF0027 [Thiocapsa marina 5811]
Length = 398
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
Query: 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
Q+GTLG GNH+ E+ +++ G+V VM+HSGSRG G+ +
Sbjct: 154 QIGTLGGGNHFIEV---------------CLDESGRVWVMLHSGSRGIGNAIGH------ 192
Query: 132 TCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
Y A ME+ M I+ DR LA S+ DY+ +++ A +A NR
Sbjct: 193 ----YFIELARRDMERWM----IQLPDRDLAYLPEGSEHFDDYVAAVSWAQAYARENREQ 244
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHM 230
M L A A+ P + + HN + E H
Sbjct: 245 MMALVLAALARHL---PAFSVTEAVVNCHHNYVEREHHF 280
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,116,463,504
Number of Sequences: 23463169
Number of extensions: 162427877
Number of successful extensions: 337105
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 1330
Number of HSP's that attempted gapping in prelim test: 332486
Number of HSP's gapped (non-prelim): 2283
length of query: 257
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 118
effective length of database: 9,097,814,876
effective search space: 1073542155368
effective search space used: 1073542155368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)