BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10094
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Q412|RTCB_ANOGA tRNA-splicing ligase RtcB homolog OS=Anopheles gambiae
GN=AGAP008147 PE=3 SV=2
Length = 506
Score = 441 bits (1133), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMV+G+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>sp|B0WCT9|RTCB1_CULQU tRNA-splicing ligase RtcB homolog 1 OS=Culex quinquefasciatus
GN=CPIJ004874 PE=3 SV=1
Length = 506
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>sp|B0XKF3|RTCB2_CULQU tRNA-splicing ligase RtcB homolog 2 OS=Culex quinquefasciatus
GN=CPIJ019543 PE=3 SV=1
Length = 502
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>sp|Q17FP1|RTCB_AEDAE tRNA-splicing ligase RtcB homolog OS=Aedes aegypti GN=AAEL003336
PE=3 SV=1
Length = 506
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/254 (83%), Positives = 226/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKFAASKMGIEELGQICVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+MAA
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRALPPHHP 387
>sp|Q9VIW7|RTCB_DROME tRNA-splicing ligase RtcB homolog OS=Drosophila melanogaster
GN=CG9987 PE=1 SV=1
Length = 506
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>sp|Q5E9T9|RTCB_BOVIN tRNA-splicing ligase RtcB homolog OS=Bos taurus PE=2 SV=1
Length = 505
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|A9CB42|RTCB_PAPAN tRNA-splicing ligase RtcB homolog OS=Papio anubis PE=3 SV=1
Length = 505
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|Q4R6X4|RTCB_MACFA tRNA-splicing ligase RtcB homolog OS=Macaca fascicularis
GN=QtsA-16939 PE=2 SV=1
Length = 505
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|Q561P3|RTCB_XENTR tRNA-splicing ligase RtcB homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 505
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 215/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAE+Q+VD+IYD++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>sp|Q19PY3|RTCB_PIG tRNA-splicing ligase RtcB homolog OS=Sus scrofa PE=2 SV=1
Length = 505
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|Q9Y3I0|RTCB_HUMAN tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=C22orf28 PE=1
SV=1
Length = 505
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|Q6NZS4|RTCB_DANRE tRNA-splicing ligase RtcB homolog OS=Danio rerio GN=zgc:76871 PE=2
SV=1
Length = 505
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/254 (78%), Positives = 214/254 (84%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVDG+QKTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>sp|Q6AYT3|RTCB_RAT tRNA-splicing ligase RtcB homolog OS=Rattus norvegicus PE=2 SV=1
Length = 505
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|Q99LF4|RTCB_MOUSE tRNA-splicing ligase RtcB homolog OS=Mus musculus GN=D10Wsu52e PE=2
SV=1
Length = 505
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389
>sp|C1MI97|RTCB_MICPC tRNA-splicing ligase RtcB homolog OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_24370 PE=3 SV=1
Length = 507
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 211/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP +A LE ALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 149 LFDHIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGYAWAEDKEHCEEYGRMLTADPNK 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEI+D AA KMG++ VGQV VMIHSGSRG G
Sbjct: 209 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDAHAAEKMGVDAVGQVMVMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL +ME+AM RD IETNDRQLACARINS EGQ+YL +M+
Sbjct: 269 HQVAT--------------DALTEMERAMARDGIETNDRQLACARINSTEGQNYLSAMSC 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F++TPDDLDMHV+YDVSHNIAK EEHMVDGK KTLLV
Sbjct: 315 AANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMHVVYDVSHNIAKIEEHMVDGKLKTLLV 374
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 375 HRKGSTRAFPPHHP 388
>sp|A7RKF6|RTCB_NEMVE tRNA-splicing ligase RtcB homolog OS=Nematostella vectensis
GN=v1g198406 PE=3 SV=1
Length = 505
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 211/254 (83%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLE+ALEMG+DWSLREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEDALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADSAK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSAKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEFAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD IE NDRQLACA I S EGQDYLK MA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIEVNDRQLACAHIKSPEGQDYLKGMAG 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK FN+TPDDLDMH+IYDVSHNIAK EEH +DG+Q+ LLV
Sbjct: 313 AANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAKVEEHFLDGRQRQLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>sp|A9UXG6|RTCB_MONBE tRNA-splicing ligase RtcB homolog OS=Monosiga brevicollis GN=24995
PE=3 SV=1
Length = 497
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/254 (78%), Positives = 218/254 (85%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPMNA+DLEEALEMGMDWSLREGY WAEDKEHCEEYGRML AD SK
Sbjct: 139 LFDHIPVGVGSKGVIPMNAKDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADASK 198
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK AA+KMGI Q+CVMIHSGSRG G
Sbjct: 199 VSARAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKEAAAKMGINKKNQICVMIHSGSRGLG 258
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD IE NDRQLACARI+S+EGQ+YLK+MAA
Sbjct: 259 HQVAT--------------DALVAMEKAMKRDGIEVNDRQLACARIHSEEGQNYLKAMAA 304
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRS+MTFLCRQAFAKQFNTTP++LDMHVIYDVSHNIAKTE HMV+G ++TLLV
Sbjct: 305 AANYAWVNRSTMTFLCRQAFAKQFNTTPEELDMHVIYDVSHNIAKTERHMVNGTERTLLV 364
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 365 HRKGSTRAFPPHHP 378
>sp|B3RID0|RTCB_TRIAD tRNA-splicing ligase RtcB homolog OS=Trichoplax adhaerens
GN=TRIADDRAFT_18395 PE=3 SV=1
Length = 510
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIPMNARDL+EALEMGMDWSLREGY WAEDKEHCEEYGRML AD +K
Sbjct: 152 LFDHIPVGVGSRGIIPMNARDLDEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADSNK 211
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S+RAKKRGLPQLGTLGAGNHYAEIQ VDEIYD +AA MGI GQ+C+M+HSGSRG G
Sbjct: 212 ISLRAKKRGLPQLGTLGAGNHYAEIQAVDEIYDSFAAKSMGINRRGQICIMVHSGSRGLG 271
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL MEKAM +D I NDRQLACARI S EGQ+YLK MAA
Sbjct: 272 HQVAT--------------DALFNMEKAMIKDGINVNDRQLACARIASDEGQNYLKGMAA 317
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F+TTPDDLDMHVIYDVSHNIAK EEH+V+GK TLLV
Sbjct: 318 AANYAWVNRSSMTFLARQAFAKCFHTTPDDLDMHVIYDVSHNIAKIEEHVVNGKLSTLLV 377
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 378 HRKGSTRAFPPHHP 391
>sp|A8QC60|RTCB_BRUMA tRNA-splicing ligase RtcB homolog OS=Brugia malayi GN=Bm1_49220
PE=3 SV=1
Length = 505
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIP+ A+ EE LEMGMDW+LREGY WAEDKEHCEEYGRML AD +K
Sbjct: 147 LFDHIPVGVGSKGIIPIGAQQFEECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADAAK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q++DEIYD++AAS+MGI+ +GQVC+MIH GSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYGEVQVIDEIYDEYAASRMGIDRLGQVCIMIHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV MEKAMKRDNI NDRQLACARINS EGQDYLK MAA
Sbjct: 267 HQVAT--------------DSLVVMEKAMKRDNIIVNDRQLACARINSMEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS MTF RQAFAK FNT+PDDLDMHVIYDVSHNIAK EEH+++G+ K L V
Sbjct: 313 AANFAWVNRSCMTFCARQAFAKVFNTSPDDLDMHVIYDVSHNIAKIEEHLINGRPKQLCV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>sp|C1E9Y5|RTCB_MICSR tRNA-splicing ligase RtcB homolog OS=Micromonas sp. (strain RCC299
/ NOUM17) GN=MICPUN_59883 PE=3 SV=1
Length = 513
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/254 (74%), Positives = 209/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEHCEEYGRMLNADP+K
Sbjct: 155 LFDHIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLNADPNK 214
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEI+DK AA KMGIE +GQV VMIHSGSRG G
Sbjct: 215 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLG 274
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL +ME+AM RD I NDRQLACA+I+S EGQ+YL +M+
Sbjct: 275 HQVAT--------------DALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSC 320
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F+ TPDDLDMHV+YDVSHNIAK EEH+VDG+ KTLLV
Sbjct: 321 AANYAWVNRSSMTFLCRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLV 380
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 381 HRKGSTRAFPPHHP 394
>sp|C3YN79|RTCB_BRAFL tRNA-splicing ligase RtcB homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_216547 PE=3 SV=1
Length = 507
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 206/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM ARDLEEALEMG+DWSLREGY WAEDKEHCEEYGRMLNAD S
Sbjct: 149 MFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLNADQSA 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
V +AKKRGLPQLGTLGAGNHYAEIQ+VDEI+D +A+ +MGI+ GQV VMIHSGSRGFG
Sbjct: 209 VGSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDDYASQRMGIDHKGQVVVMIHSGSRGFG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD + TNDRQLACARI+S EGQ+YLK MA
Sbjct: 269 HQVAT--------------DALVAMEKAMKRDKVLTNDRQLACARIHSPEGQEYLKGMAC 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDM +IYDVSHNIAK EEH+ TLLV
Sbjct: 315 AANFAWVNRSSMTFLSRQAFAKVFNTTPDDLDMQLIYDVSHNIAKMEEHISFQLSTTLLV 374
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 375 HRKGSTRAFPPHHP 388
>sp|Q54Y09|RTCB_DICDI tRNA-splicing ligase RtcB homolog OS=Dictyostelium discoideum
GN=DDB_G0278481 PE=3 SV=1
Length = 508
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 206/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEHCEEYGRMLNADP+K
Sbjct: 150 LFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGRMLNADPTK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+VDEIYDK AA+KMGI+ GQ+C+MIHSGSRG G
Sbjct: 210 VSERAKKRGLPQLGTLGAGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L MEKAM RD+I ND+QLAC+RINS EGQDYL MAA
Sbjct: 270 HQVAT--------------DSLTLMEKAMARDHIHLNDKQLACSRINSTEGQDYLSGMAA 315
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR SMTFL RQAFAK FN+TPDDLDMHVIYDVSHNIAK EEH V+G+ K LLV
Sbjct: 316 AANFAWVNRQSMTFLTRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEEHNVNGRPKKLLV 375
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 376 HRKGATRAFAPHHP 389
>sp|A8JC00|RTCB_CHLRE tRNA-splicing ligase RtcB homolog OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_139581 PE=3 SV=1
Length = 476
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 206/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP A+D+E ALE+GMDWSLREGY WAEDKEHCEEYGRMLNADP
Sbjct: 118 LFDHIPVGVGSQGIIPTTAKDMESALELGMDWSLREGYAWAEDKEHCEEYGRMLNADPRY 177
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAE+Q+VDE+YD AA +MGI+ GQV VMIHSGSRG G
Sbjct: 178 VSSRAKKRGLPQMGTLGAGNHYAEVQVVDEVYDAVAARRMGIDTPGQVVVMIHSGSRGLG 237
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV ME+AM RD I TNDRQLACARINS+EGQ YLK+M+
Sbjct: 238 HQVAT--------------DALVAMERAMARDGIITNDRQLACARINSEEGQAYLKAMSC 283
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFL RQAFAK F +TPDDLDMHV+YDVSHNIAK E+H VDG+ + LLV
Sbjct: 284 AANYAWVNRSSMTFLARQAFAKIFKSTPDDLDMHVVYDVSHNIAKVEQHCVDGQHRRLLV 343
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 344 HRKGSTRAFPPHHP 357
>sp|Q00ZY2|RTCB_OSTTA tRNA-splicing ligase RtcB homolog OS=Ostreococcus tauri
GN=Ot10g01930 PE=3 SV=1
Length = 515
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/254 (74%), Positives = 208/254 (81%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP LE LEMGMDWSLREGY WAEDKEH EEYGRMLNADPSK
Sbjct: 157 LFDHIPVGVGSRGIIPTTPAALEAVLEMGMDWSLREGYAWAEDKEHTEEYGRMLNADPSK 216
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEIYD++AA KMGI+ VGQVC+MIHSGSRG G
Sbjct: 217 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGLG 276
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L ME+AM+RD IE NDRQLACARI+S+EGQDYL +MA
Sbjct: 277 HQVAT--------------DSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMAC 322
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F PD+LDMHV+YDVSHNIAK EEHMVDG+ KTLLV
Sbjct: 323 AANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLV 382
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 383 HRKGSTRAFPPHHP 396
>sp|A4S3S3|RTCB_OSTLU tRNA-splicing ligase RtcB homolog OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_25152 PE=3 SV=1
Length = 514
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 210/254 (82%), Gaps = 18/254 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+GIIP + LE ALEMGMDWSLREGY WAEDKEH EEYGRMLNADPSK
Sbjct: 156 LFDHIPVGVGSRGIIPTSPAALEAALEMGMDWSLREGYAWAEDKEHTEEYGRMLNADPSK 215
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQ+GTLGAGNHYAEIQ+VDEIYD++AA KMGI+ VGQ+C+MIHSGSRG G
Sbjct: 216 VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQICIMIHSGSRGLG 275
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L ME+AM+RD IE NDRQLACA+I+S+EGQDYL +MA
Sbjct: 276 HQVAT--------------DSLTAMERAMERDGIEVNDRQLACAKISSQEGQDYLAAMAC 321
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AWVNRSSMTFLCRQAFAK F PD+LDMHV+YDVSHNIAK EEH+VDG+ KTLLV
Sbjct: 322 AANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHIVDGEMKTLLV 381
Query: 241 HRKVS----EPSHP 250
HRK S P HP
Sbjct: 382 HRKGSTRAFPPHHP 395
>sp|P90838|RTCB_CAEEL tRNA-splicing ligase RtcB homolog OS=Caenorhabditis elegans
GN=F16A11.2 PE=3 SV=2
Length = 505
Score = 362 bits (928), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/250 (69%), Positives = 196/250 (78%), Gaps = 14/250 (5%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAE+Q+VDEIYDK AAS MGI++ GQV VM+H GSRG G
Sbjct: 207 VSLRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDEEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+MEKAM RD I ND+QLACARINS EG++Y MAA
Sbjct: 267 HQVAT--------------DSLVEMEKAMARDGIVVNDKQLACARINSVEGKNYFSGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L V
Sbjct: 313 AANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRQLCV 372
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 373 HRKGATRAFP 382
>sp|Q7RI54|RTCB_PLAYO tRNA-splicing ligase RtcB homolog OS=Plasmodium yoelii yoelii
GN=PY03776 PE=3 SV=1
Length = 507
Score = 333 bits (853), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 192/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK +CE+ GR L A+
Sbjct: 149 LFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSLYANSDY 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 209 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK M + I D+QLAC I+S EGQ+YLK+M A
Sbjct: 269 HQIAT--------------DALIEMEKVMSKYKINVIDKQLACTPIHSPEGQNYLKAMGA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLV
Sbjct: 315 ACNFAWINRSSMTFLARQAFSKVFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLV 374
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 375 HRKGSTRAFPPFHPLV 390
>sp|Q8IIU6|RTCB_PLAF7 tRNA-splicing ligase RtcB homolog OS=Plasmodium falciparum (isolate
3D7) GN=PF11_0068 PE=3 SV=1
Length = 506
Score = 332 bits (850), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/256 (63%), Positives = 193/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK +CE+ GR L AD +
Sbjct: 148 LFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSLYADSNF 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSIRAKKRGITQMGTLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL+ MEK+M + I D+QLAC I+SKEGQ+YLK+M +
Sbjct: 268 HQIAT--------------DALIDMEKSMNKYKINVIDKQLACTPIHSKEGQNYLKAMGS 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH +DGK K LLV
Sbjct: 314 ACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHYIDGKIKKLLV 373
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 374 HRKGSTRAFPPFHPLV 389
>sp|B3L4K9|RTCB_PLAKH tRNA-splicing ligase RtcB homolog OS=Plasmodium knowlesi (strain H)
GN=PKH_090290 PE=3 SV=1
Length = 511
Score = 331 bits (849), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 193/256 (75%), Gaps = 18/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F++IPVGVGS+G I N L+EAL +GMDW ++EGY W EDK +CE+ GR AD +
Sbjct: 153 LFNNIPVGVGSQGCILCNQDKLDEALCLGMDWCVKEGYAWVEDKLNCEDNGRSFYADSNY 212
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 213 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYDKRSAKLMGIEKKNQVCIMIHSGSRGLG 272
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK+M + I+ D+QLAC I+SKEGQ+YLK+M +
Sbjct: 273 HQIAT--------------DALIEMEKSMTKYKIDVIDKQLACTPIHSKEGQNYLKAMGS 318
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQ FAK FN +PDDLDMHVIYD+SHNIAK E+H+VDGK K LLV
Sbjct: 319 ACNFAWINRSSMTFLARQTFAKIFNQSPDDLDMHVIYDISHNIAKMEDHLVDGKMKKLLV 378
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 379 HRKGSTRAFPPFHPAV 394
>sp|Q4N1R8|RTCB_THEPA tRNA-splicing ligase RtcB homolog OS=Theileria parva GN=TP04_0661
PE=3 SV=1
Length = 507
Score = 327 bits (839), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 156/257 (60%), Positives = 192/257 (74%), Gaps = 18/257 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVG +G IP + DL+ LE GMDWS+ GY WAEDKEHCE++GRM+ ADP+
Sbjct: 149 LFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTV 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGL Q+GTLGAGNHY E+Q+V+EIYD+++A MGI+ +GQVC+M HSGSRG G
Sbjct: 209 VSYRAKKRGLSQIGTLGAGNHYGEVQVVEEIYDEYSAKVMGIDRIGQVCIMTHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ DALV ME ++ + I+ ND+QLACARINS EG+ YLK MAA
Sbjct: 269 HQVAS--------------DALVDMENSLNKSKIKVNDKQLACARINSDEGKKYLKGMAA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AWVNRS MT L R+AF + + DDLDMHV+YDVSHNIAK E+H+VDGK K LL+
Sbjct: 315 ASNYAWVNRSVMTHLTRKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHIVDGKLKRLLL 374
Query: 241 HRKVSE----PSHPGVS 253
HRK S P HP +S
Sbjct: 375 HRKGSTRAFPPYHPLIS 391
>sp|Q4YUZ9|RTCB_PLABA tRNA-splicing ligase RtcB homolog OS=Plasmodium berghei (strain
Anka) GN=PB000816.02.0 PE=3 SV=1
Length = 505
Score = 323 bits (829), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 159/256 (62%), Positives = 191/256 (74%), Gaps = 19/256 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDWS++EGY W EDK +CE+ GR L A+
Sbjct: 148 LFNHIPVGVGSQGFILCNQNNLDDALSLGMDWSVKEGYSWIEDKLNCEDNGRSLYANSDY 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVDEIY+K +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSVRAKKRGITQMGTLGAGNHYAEIQIVDEIYNKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL++MEK M + I D+QLAC I+S EGQ+YLK+M A
Sbjct: 268 HQIAT--------------DALIEMEKIMSKYKINVIDKQLACTPIHSPEGQNYLKAMGA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL QAF+K FN +PDDLDMHVIYDVSHNIAK EEH ++GK + LLV
Sbjct: 314 ACNFAWINRSSMTFLA-QAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHFINGKVQNLLV 372
Query: 241 HRKVSE----PSHPGV 252
HRK S P HP V
Sbjct: 373 HRKGSTRAFPPFHPLV 388
>sp|Q4U923|RTCB_THEAN tRNA-splicing ligase RtcB homolog OS=Theileria annulata GN=TA10620
PE=3 SV=1
Length = 515
Score = 322 bits (824), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 192/265 (72%), Gaps = 26/265 (9%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FD IPVGVG +G IP + DL+ LE GMDWS+ GY WAEDKEHCE++GRM+ ADP+
Sbjct: 149 LFDLIPVGVGCQGKIPCDYGDLDNILEYGMDWSVCSGYSWAEDKEHCEDFGRMIQADPTV 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQI--------VDEIYDKWAASKMGIEDVGQVCVMI 112
VS RAKKRGL Q+GTLGAGNHY E+Q+ V+EIYD+++A MGI+ +GQVC+M
Sbjct: 209 VSYRAKKRGLSQIGTLGAGNHYGEVQVSIYSNIYVVEEIYDEYSAKVMGIDRIGQVCIMT 268
Query: 113 HSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQ 172
HSGSRG GHQVA+ DALV ME ++ + I+ ND+QLACARINS EG+
Sbjct: 269 HSGSRGLGHQVAS--------------DALVDMENSLNKSKIKVNDKQLACARINSDEGK 314
Query: 173 DYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 232
YLK MAAA+N+AWVNRS MT L R+AF + + DDLDMHV+YDVSHNIAK E+HMVD
Sbjct: 315 KYLKGMAAASNYAWVNRSVMTHLTRKAFEEVLKESADDLDMHVVYDVSHNIAKIEDHMVD 374
Query: 233 GKQKTLLVHRKVSE----PSHPGVS 253
GK K LL+HRK S P HP +S
Sbjct: 375 GKLKRLLLHRKGSTRAFPPYHPLIS 399
>sp|B8LBM8|RTCB_THAPS tRNA-splicing ligase RtcB homolog OS=Thalassiosira pseudonana
GN=THAPSDRAFT_41953 PE=3 SV=1
Length = 480
Score = 303 bits (777), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 155/259 (59%), Positives = 193/259 (74%), Gaps = 18/259 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +IPVGVG G IP + DL++ L G+DW++ +GY W EDK+HCEE G M ADP+
Sbjct: 122 LFRNIPVGVGVSGGIPCSIDDLDQLLRNGVDWAIEKGYAWEEDKDHCEENGCMETADPNC 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGL QLGTLGAGNHY EIQ+VDE+Y+ AA MGI VGQVC+MIH+GSRG G
Sbjct: 182 VSKRAKKRGLKQLGTLGAGNHYTEIQVVDEVYNTEAAKIMGIGTVGQVCIMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DAL ME+AM RD I+ NDRQL+CARI+SKEG++YL +M+A
Sbjct: 242 HQVAT--------------DALQVMEEAMCRDAIDLNDRQLSCARISSKEGREYLAAMSA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +T+L R+AF++ F DD+DMH++YDV HNIAK E+H+VDG+QKTLLV
Sbjct: 288 AANFAWVNRSCITYLARKAFSEVFQRESDDMDMHLVYDVCHNIAKVEQHIVDGEQKTLLV 347
Query: 241 HRKVSE----PSHPGVSRN 255
HRK S P HP + ++
Sbjct: 348 HRKGSTRAYPPCHPDIPKD 366
>sp|Q6LXF9|RTCB_METMP tRNA-splicing ligase RtcB OS=Methanococcus maripaludis (strain S2 /
LL) GN=rtcB PE=3 SV=1
Length = 480
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 163/243 (67%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG I + +++ LE G+ W++ E Y W D +H EE+G+M ADP+
Sbjct: 123 IFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWAVEEEYGWERDIKHIEEHGKMKEADPTL 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AKKRGLPQLG+LG+GNH+ E+Q VDEI+D+ AA G+ QV +MIH+GSRG G
Sbjct: 183 VSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDEEAAKTFGVSP-DQVVLMIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ D L ME A K+ NI+ DRQLACA INS+EGQ Y K+M+
Sbjct: 242 HQICA--------------DYLRYMENAAKKYNIKLPDRQLACAPINSEEGQKYFKAMSC 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F F T+ +DL+M +IYDV+HNIAK E+H+VDG K ++V
Sbjct: 288 GANYAWANRQLITHWIRESFESVFKTSAEDLEMDIIYDVAHNIAKKEQHLVDGVLKNVVV 347
Query: 241 HRK 243
HRK
Sbjct: 348 HRK 350
>sp|O29399|RTCB_ARCFU tRNA-splicing ligase RtcB OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rtcB PE=3 SV=1
Length = 482
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 158/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS+G + ++ R+L+E G W++ GY + D +HCEE G + A P
Sbjct: 125 LFVAVPSGVGSEGRLRVSDRELDEIFVEGARWAVENGYGYERDLKHCEEEGALEGARPEV 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +A+ RG PQLGTLG+GNH+ E+Q VD+++D+ A+K GIE+ G V VMIH GSRG G
Sbjct: 185 VSKKARDRGRPQLGTLGSGNHFLEVQYVDKVFDEKVAAKFGIEE-GMVTVMIHCGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D L +++A+K+ I+ DRQLACA INSKEGQDY MAA
Sbjct: 244 HQVCT--------------DFLEVLDRAVKKYGIKLPDRQLACAPINSKEGQDYFAGMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
+AN+AW NR + R+ F K + DDL M ++YDV+HNIAK EEH VDGK+ L V
Sbjct: 290 SANYAWCNRQIIAHWVRETFQKVMGMSEDDLGMELVYDVAHNIAKFEEHRVDGKKMKLCV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>sp|B0EAV2|RTCB1_ENTDS tRNA-splicing ligase RtcB homolog 1 OS=Entamoeba dispar (strain
ATCC PRA-260 / SAW760) GN=EDI_022970 PE=3 SV=1
Length = 535
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 153/261 (58%), Gaps = 21/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG+K I + D + + G+++ ++ GY W ED HCEE+G++ NADPS
Sbjct: 180 LFKQIPSGVGTKAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEHGKIANADPSL 239
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG Q+GTLG+GNHY E+Q+VDEI D AA MGI +VGQVC+M+H GSRG G
Sbjct: 240 VSKSAKSRGYKQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGINEVGQVCIMVHCGSRGLG 299
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C Y+ + MK D+QL NS GQ Y +M
Sbjct: 300 HQV---------CQDYI--------DLCMKSGICNPIDKQLTGVPFNSPIGQQYYSAMNC 342
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFA+ NR +T+ RQAF P +DMH++YDV HNIAK EEH VD K+ +V
Sbjct: 343 CANFAFANRGMITYRIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHEVDNKKVQCIV 402
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP +S + K
Sbjct: 403 HRKGATRAFPPQHPDISEDYK 423
>sp|Q58095|RTCB_METJA tRNA-splicing ligase RtcB OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rtcB PE=3 SV=1
Length = 968
Score = 233 bits (594), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 167/250 (66%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKGI+ + +++ LE G+ W+++EGY W ED E EE+G + +AD S
Sbjct: 611 LFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIEEHGCLKDADASY 670
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG QLG+LG+GNH+ E+Q V++++D+ AA GIE+ QV V++H+GSRG G
Sbjct: 671 VSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEIYGIEE-NQVVVLVHTGSRGLG 729
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T D L MEKA K I+ DRQLACA S+EGQ Y K+M
Sbjct: 730 HQICT--------------DYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCC 775
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AN+AW NR +T R++F + F +DL+M+++YDV+HNIAK EEH++DG++ ++V
Sbjct: 776 GANYAWANRQMITHWVRESFEEVFKIHAEDLEMNIVYDVAHNIAKKEEHIIDGRKVKVIV 835
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 836 HRKGATRAFP 845
>sp|Q9V168|RTCB_PYRAB tRNA-splicing ligase RtcB OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rtcB PE=3 SV=1
Length = 916
Score = 231 bits (589), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 159/250 (63%), Gaps = 15/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G + ++ +++ L G W++ GY W ED E EE GRM ADP
Sbjct: 559 LFKNVPSGVGSQGRVRLHWTQIDDVLVDGAKWAVDNGYGWEEDLERLEEGGRMEGADPDA 618
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 619 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKVYGLFE-GQVVVMVHTGSRGLG 677
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 678 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 723
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F P+DL M ++YDV+HNI K EEH VDGK+ ++V
Sbjct: 724 AANFAWANRQMITHWVRESFQEVFRQDPEDLGMSIVYDVAHNIGKVEEHEVDGKKVKVIV 783
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 784 HRKGATRAFP 793
>sp|C4M6T2|RTCB2_ENTHI tRNA-splicing ligase RtcB homolog 2 OS=Entamoeba histolytica
GN=EHI_184560 PE=3 SV=1
Length = 535
Score = 230 bits (586), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 152/261 (58%), Gaps = 21/261 (8%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG++ I + D + ++ G+++ + GY W ED HCEE+G++ NADPS
Sbjct: 180 LFKQIPSGVGTQAQIAFSPEDFDSIMKEGLEFLVENGYAWEEDLNHCEEHGKIANADPSL 239
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK RG Q+GTLG+GNHY E+Q+VDEI D AA MGI ++GQVC+M+H GSRG G
Sbjct: 240 VSNSAKSRGYKQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGITEIGQVCIMVHCGSRGLG 299
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV C Y+ MK D+QL NS GQ Y +M
Sbjct: 300 HQV---------CQDYI--------NLCMKSGICNPVDKQLTGVPFNSPIGQQYYSAMNC 342
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
ANFA+ NR +T+ RQAF P +DMH++YDV HNIAK EEH VD K+ +V
Sbjct: 343 CANFAFANRGMITYRIRQAFETVLRMKPKKMDMHLVYDVCHNIAKVEEHDVDNKKVQCIV 402
Query: 241 HRKVSE----PSHPGVSRNKK 257
HRK + P HP +S + K
Sbjct: 403 HRKGATRAFPPQHPDISEDYK 423
>sp|Q8ZY09|RTCB_PYRAE tRNA-splicing ligase RtcB OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rtcB
PE=1 SV=1
Length = 484
Score = 228 bits (580), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 163/252 (64%), Gaps = 17/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + V+YDV+HNIAK EEH+VD G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLEVVYDVAHNIAKLEEHVVDEKGTVRKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
Length = 970
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 160/251 (63%), Gaps = 16/251 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G + ++ +++ L G W++ +GY W D E EE GRM ADP
Sbjct: 612 LFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRMEGADPDA 671
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D+ A G+ + GQV VM+H+GSRG G
Sbjct: 672 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFE-GQVVVMVHTGSRGLG 730
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 731 HQVAS--------------DYLRIMERAIRKYGIPWPDRELVSVPFQSEEGQRYFSAMKA 776
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 777 AANFAWANRQMITHWVRESFQEVFRQDPEGDLGMEIVYDVAHNIGKVEEHEVDGKKVKVI 836
Query: 240 VHRKVSEPSHP 250
VHRK + + P
Sbjct: 837 VHRKGATRAFP 847
>sp|O59245|RTCB_PYRHO tRNA-splicing ligase RtcB OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rtcB PE=1 SV=1
Length = 871
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I ++ +++ L G W++ GY W D E EE GRM ADP
Sbjct: 513 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 572
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 573 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 631
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 632 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 677
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 678 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 737
Query: 240 VHRKVS----EPSHPGVSR 254
VHRK + P H V R
Sbjct: 738 VHRKGATRAFPPGHEAVPR 756
>sp|Q9YB37|RTCB_AERPE tRNA-splicing ligase RtcB OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rtcB PE=3
SV=2
Length = 481
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 172/259 (66%), Gaps = 19/259 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ ++P G+GS G + ++ ++L++ L+ G++W++ GY W EDKEH EE G AD SK
Sbjct: 125 LYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGWPEDKEHIEERGSWSLADSSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGTLG+GNH+ E+Q+V+ ++D+ A G+ + GQV VMIH+GSRG G
Sbjct: 185 VSQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDERIAKAYGLFE-GQVVVMIHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L+ ME+AM++ DR+LA NS E Q+Y+++MAA
Sbjct: 244 HQVAS--------------DYLMIMERAMRKYGTIPPDRELASIPYNSPEAQNYVRAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F K F+ PD L + ++YDV+HNIAK EE+ VDGK+K L++
Sbjct: 290 AANFAWTNRQMITHWTRESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEYEVDGKRKKLVI 349
Query: 241 HRKVS----EPSHPGVSRN 255
HRK + P HP + ++
Sbjct: 350 HRKGATRAFPPGHPEIPKD 368
>sp|Q5JCZ1|RTCB_PYRKO tRNA-splicing ligase RtcB OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rtcB PE=3 SV=1
Length = 482
Score = 221 bits (562), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 161/258 (62%), Gaps = 19/258 (7%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P G+GSKG + ++ L++ L G W++ GY W D EH EE GRM ADP
Sbjct: 125 LFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWERDLEHLEEGGRMEGADPDA 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RG PQLG+LG+GNH+ E+Q VD++Y++ A G+ + GQV VM+H+GSRG G
Sbjct: 185 VSQKAKQRGAPQLGSLGSGNHFLEVQYVDKVYNEEIAKAYGLFE-GQVVVMVHTGSRGLG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L MEKA ++ + DR+L S+EGQ Y +M A
Sbjct: 244 HQVAS--------------DYLRIMEKANRKYGVPWPDRELVSVPFQSEEGQQYFSAMKA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T R++F + F +D++M ++YDV+HNIAK EEH VDGK+ ++V
Sbjct: 290 AANFAWANRQMITHWVRESFEEVFKRKAEDMEMEIVYDVAHNIAKLEEHEVDGKKVKVVV 349
Query: 241 HRKVS----EPSHPGVSR 254
HRK + HP V R
Sbjct: 350 HRKGATRAFPAGHPDVPR 367
>sp|O27634|RTCB_METTH tRNA-splicing ligase RtcB OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rtcB PE=3 SV=2
Length = 482
Score = 210 bits (535), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 15/243 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGSKG I + +++E LE G +W++ GY W +D EE G+M +A K
Sbjct: 125 LFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKMEDASSEK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRG+PQLG+LG+GNH+ E+Q+VDEI+D+ AA G+ G+V VMIHSGSRG G
Sbjct: 185 VSEKAKKRGIPQLGSLGSGNHFLEVQMVDEIFDEEAARVYGVSP-GKVAVMIHSGSRGCG 243
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ + D L M+KA +R I DRQLACA ++S E DY ++MAA
Sbjct: 244 HQICS--------------DYLRLMDKAYRRYKINIPDRQLACAPVDSDEALDYFQAMAA 289
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R++F F T +D++M ++YDV+HNIAK E H + G++ + V
Sbjct: 290 AANYAWANRQMIVHWVRESFEAVFGMTAEDMEMEIVYDVAHNIAKKEVHTIKGRETEVFV 349
Query: 241 HRK 243
HRK
Sbjct: 350 HRK 352
>sp|C4M244|RTCB1_ENTHI tRNA-splicing ligase RtcB homolog 1 OS=Entamoeba histolytica
GN=EHI_169260 PE=3 SV=1
Length = 524
Score = 204 bits (518), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 17/240 (7%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+IP GVG+ + +++ E + G++W +++G W ED +CEE GR++N+DP VS
Sbjct: 172 NIPSGVGTTSTQTLTEKEMNEIMNEGLEWLVKKGLAWKEDLVYCEENGRIINSDPHLVSQ 231
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A+ RG QLGTLG+GNHY EIQ VDEI DK AA +MGI +GQ+C+MIH GSRG GHQV
Sbjct: 232 KARGRGRNQLGTLGSGNHYLEIQRVDEIMDKEAAKQMGISHIGQICIMIHCGSRGLGHQV 291
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C +V + + + N D QL S GQ Y K+M AAAN
Sbjct: 292 ---------CQDFV--------DMCVSQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAAN 334
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A+ NR +++ R F + F +P DLDMH++YDV HNIAK E H+VDGK+ +VHRK
Sbjct: 335 YAFANRGMISYHVRCTFEQVFQKSPKDLDMHLVYDVCHNIAKEESHLVDGKEIKCIVHRK 394
>sp|B0EIW5|RTCB2_ENTDS tRNA-splicing ligase RtcB homolog 2 OS=Entamoeba dispar (strain
ATCC PRA-260 / SAW760) GN=EDI_260790 PE=3 SV=1
Length = 524
Score = 194 bits (492), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 146/240 (60%), Gaps = 17/240 (7%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
+IP GVG+ + +++ E + G++W +++ W ED +CEE GR++N+DP VS
Sbjct: 172 NIPSGVGTTSNQTLTEKEMNEIMNEGLEWLVKKDLAWKEDLVYCEENGRIINSDPHLVSQ 231
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
+A+ RG QLGTLG+GNHY EIQ VDEI D AA +MGI +GQ+C+MIH GSRG GHQV
Sbjct: 232 KARGRGRNQLGTLGSGNHYLEIQRVDEIMDMEAAKQMGISHIGQICIMIHCGSRGLGHQV 291
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
C +V + + + N D QL S GQ Y K+M AAAN
Sbjct: 292 ---------CQDFV--------DLCVNQSNKNEVDIQLTGVPFQSDNGQKYFKAMNAAAN 334
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+A+ NR +++ R F + F +P DLDMH++YDV HNIAK E H++DG + +VHRK
Sbjct: 335 YAFANRGMISYHVRCTFEQVFKKSPKDLDMHLVYDVCHNIAKEEIHLIDGNEIKCIVHRK 394
>sp|Q74MJ0|RTCB_NANEQ tRNA-splicing ligase RtcB OS=Nanoarchaeum equitans (strain Kin4-M)
GN=rtcB PE=3 SV=1
Length = 477
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 157/250 (62%), Gaps = 17/250 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVG G + ++ +L + L+ G++W++ G+ W ED+ E +G + AD
Sbjct: 122 IFRNVPAGVGEGGKLKLSIDELNKVLDYGVNWAIDNGFGWEEDRNRIESHGYLDFADSDA 181
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS AK+RG QLGT+G+GNH+ EIQ+VD+IYD+ A GI + QV V+IH+GSRG G
Sbjct: 182 VSNTAKQRGKDQLGTIGSGNHFLEIQVVDQIYDEEIAKAFGIYEKNQVTVLIHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L EK K D DR+L A +SK+ Q+YLK+MAA
Sbjct: 242 HQVAS--------------DYLRLFEKKYKYD---VPDRELIYAPYDSKDAQNYLKAMAA 284
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAW NR +T+ R++F K + + + ++YD++HNIAK EEH +DGK++ L+V
Sbjct: 285 AANFAWANRQLITYWVRKSFEKVLRKNIESIGLEIVYDLAHNIAKFEEHTIDGKKQKLIV 344
Query: 241 HRKVSEPSHP 250
+RK + + P
Sbjct: 345 YRKGATRAFP 354
>sp|P71930|RTCB_MYCTU RNA-splicing ligase RtcB OS=Mycobacterium tuberculosis GN=rtcB PE=2
SV=5
Length = 432
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
>sp|P59975|RTCB_MYCBO RNA-splicing ligase RtcB OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rtcB PE=3 SV=1
Length = 432
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 21/247 (8%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRK 243
+ NR +T R+ FA TP DL +YDVSHN+AK E H +DG+ +++ VHRK
Sbjct: 250 YGRANRQLLTEATRRVFADA-TGTPLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRK 304
Query: 244 VSEPSHP 250
+ S P
Sbjct: 305 GATRSLP 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,569,212
Number of Sequences: 539616
Number of extensions: 3971138
Number of successful extensions: 8723
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8597
Number of HSP's gapped (non-prelim): 69
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)