Query psy10094
Match_columns 257
No_of_seqs 187 out of 878
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:43:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3833|consensus 100.0 6.8E-77 1.5E-81 548.6 15.9 243 1-257 147-393 (505)
2 PF01139 RtcB: tRNA-splicing l 100.0 1.4E-62 3E-67 472.1 14.1 221 1-253 95-315 (420)
3 COG1690 RtcB Uncharacterized c 100.0 3.5E-56 7.7E-61 428.3 14.2 220 1-249 104-323 (432)
4 TIGR03073 release_rtcB release 100.0 7.2E-51 1.6E-55 383.7 16.6 143 67-251 112-254 (356)
5 PRK09588 hypothetical protein; 100.0 4.7E-50 1E-54 380.4 15.9 143 66-250 122-264 (376)
6 PF06857 ACP: Malonate decarbo 68.6 24 0.00052 27.4 6.5 40 71-125 6-46 (87)
7 PRK13253 citrate lyase subunit 33.7 2.1E+02 0.0046 22.4 6.7 39 72-125 8-47 (92)
8 PF15631 Imm-NTF2-2: NTF2 fold 30.5 69 0.0015 23.8 3.3 24 74-114 42-65 (66)
9 PF09263 PEX-2N: Peroxisome bi 27.2 62 0.0013 25.3 2.6 25 79-110 58-82 (87)
10 PF14398 ATPgrasp_YheCD: YheC/ 26.4 47 0.001 30.2 2.2 23 78-111 205-227 (262)
11 PF09899 DUF2126: Putative ami 25.5 36 0.00077 36.3 1.3 12 71-83 429-440 (819)
12 PF03459 TOBE: TOBE domain; I 25.5 2.3E+02 0.0049 19.4 5.7 27 88-114 33-59 (64)
13 PF01568 Molydop_binding: Moly 25.0 62 0.0013 24.6 2.4 29 81-116 30-58 (110)
14 COG0107 HisF Imidazoleglycerol 23.8 1.5E+02 0.0033 27.5 4.9 94 4-135 74-168 (256)
No 1
>KOG3833|consensus
Probab=100.00 E-value=6.8e-77 Score=548.56 Aligned_cols=243 Identities=83% Similarity=1.258 Sum_probs=238.4
Q ss_pred CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN 80 (257)
Q Consensus 1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN 80 (257)
||..||+||||+|.+++...+|+++|+.|+.|.+++||.|.+|.+|||++|+|..+||.+||+++++|+.+||||||+||
T Consensus 147 lFdhIPvGvGS~g~ipm~a~dL~e~LEmG~dw~Lregy~waEDkEhCEeyGrml~aD~~kVs~raKkrGLpQLGTLGaGN 226 (505)
T KOG3833|consen 147 LFDHIPVGVGSKGRIPMNADDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPRKVSQRAKKRGLPQLGTLGAGN 226 (505)
T ss_pred HHhhCCcccCcCCcccccHHHHHHHHHhcccceeccCcchhhhHHHHHHhhhHhhCChHHhhhhhhhcCCccccccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094 81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ 160 (257)
Q Consensus 81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~ 160 (257)
||+|||+||||||++.|..|||++.|||++||||||||||||||+ +-+-+|+++|.+.+|.+.|+|
T Consensus 227 HYaEvQvVDEiyd~~~A~~MGI~~kGQvvVMiH~GSRGlGHqVat--------------dsLv~Mekamard~i~~nd~Q 292 (505)
T KOG3833|consen 227 HYAEVQVVDEIYDKEAASKMGIDEKGQVVVMIHSGSRGLGHQVAT--------------DSLVKMEKAMARDKIVVNDRQ 292 (505)
T ss_pred ceEEEEehHHHhhHhhhhhcCcCCCCcEEEEEecCCccccchhhH--------------HHHHHHHHhhhccceeecchh
Confidence 999999999999999999999998899999999999999999999 989899999999999999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeEE
Q psy10094 161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240 (257)
Q Consensus 161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~V 240 (257)
|+|++++|.|||+||..|.+|+||||.||..|+...|++|.++|+.+|+++++.+||||+||+++.|+|.|||++++++|
T Consensus 293 LACarinS~Egq~Yl~~MaaAaNfAwVNRs~~Tf~~RqAF~KvF~~s~dd~dl~viYDVsHNiaKvE~H~VdG~er~l~V 372 (505)
T KOG3833|consen 293 LACARINSVEGQDYLKGMAAAANFAWVNRSSMTFLTRQAFAKVFNTSPDDLDLHVIYDVSHNIAKVEKHMVDGKERDLLV 372 (505)
T ss_pred hcccccCChhhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCccccceEEEeehhhhHHHHHHHhcCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC----CCCCCCCCCCCC
Q psy10094 241 HRKVS----EPSHPGVSRNKK 257 (257)
Q Consensus 241 HRKGA----~p~~~~~p~~~~ 257 (257)
||||| ||-||.||-.|.
T Consensus 373 HRKGatRAFPpHHPlIpvdYq 393 (505)
T KOG3833|consen 373 HRKGATRAFPPHHPLIPVDYQ 393 (505)
T ss_pred eccCccccCCCCCCCCccchh
Confidence 99999 999999998873
No 2
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.
Probab=100.00 E-value=1.4e-62 Score=472.10 Aligned_cols=221 Identities=48% Similarity=0.793 Sum_probs=172.3
Q ss_pred CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN 80 (257)
Q Consensus 1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN 80 (257)
|++.||+|+|++++++++..++++++++|++|+++.++++++ .+++..+++.+.+++..|||||||||
T Consensus 95 i~~~ip~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~qLGTLGgGN 162 (420)
T PF01139_consen 95 IRKNIPSGVGSHRKIPLSKEDLEEVLEEGAPWLLEKGYGFPE------------EADPSKVSQKARDRGRKQLGTLGGGN 162 (420)
T ss_dssp HHHHS--STT---SS---CCCHHHHHHHCHHHHHHTTSS-GG------------T--GGGS-HHHHHHHGGGTT---STT
T ss_pred HhhhCCCCCCCCCCCcCCHHHHHHHHHhhhHHHHHhhcCCcc------------ccchhhccHHHHhhhHhhcCCCCCCc
Confidence 457899999999989999999999999999999999988753 45678899999999999999999999
Q ss_pred eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094 81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ 160 (257)
Q Consensus 81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~ 160 (257)
||||||+||+|||+++|.+|||+++|++||||||||||||++||+ +|++.+.+.+.++++++|+++
T Consensus 163 HFiEiq~v~~v~~~~~a~~~gl~~~g~v~l~vHsGSRglG~~i~~--------------~~~~~a~~~~~~~~~~~~~~~ 228 (420)
T PF01139_consen 163 HFIEIQVVEEVFDKEAANALGLDENGQVWLMVHSGSRGLGHQIAE--------------YYIKKAKEQMKKYGIKLPDKD 228 (420)
T ss_dssp -EEEEEEEEEES-HHHHHHCT--T-TEEEEEEEE--CCHHHHHHH--------------HHHHHHHCCHHHCT---SSCC
T ss_pred ceEEeeeeehhcCHHHHhhcCccccceEEEEEecCCcHHHHHHHH--------------HHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999998899999999999999999999 777777666778889999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeEE
Q psy10094 161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240 (257)
Q Consensus 161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~V 240 (257)
|+|+|++|++|++||.+|++|+|||++||++|+++|+++|.++|+. + +++..++||++|||++.|+| +| +++||
T Consensus 229 l~~l~~~s~~~~~Yl~~m~~A~~~A~~NR~~i~~~i~~~l~~~~~~-~-~~~~~~~~d~~HN~~~~e~~--~~--~~~~v 302 (420)
T PF01139_consen 229 LAYLPLDSEEGQDYLKAMNAAQNYAFANRQLIAHRILEALRDVFGK-A-DLEIELVYDVHHNYIKFEEH--DG--EEVWV 302 (420)
T ss_dssp G--EETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-S-C-CC--EEEEEEESEEEEEEEE--CC--EEEEE
T ss_pred cceecCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCc-c-ccccceEEECcCCCeeEEEe--cc--cceEE
Confidence 9999999999999999999999999999999999999999999987 2 56789999999999999988 44 68999
Q ss_pred EcCCCCCCCCCCC
Q psy10094 241 HRKVSEPSHPGVS 253 (257)
Q Consensus 241 HRKGA~p~~~~~p 253 (257)
|||||+|+...-|
T Consensus 303 hRKGAt~A~~G~~ 315 (420)
T PF01139_consen 303 HRKGATPAFKGQP 315 (420)
T ss_dssp EEESEEE--T--E
T ss_pred EcccceecCCCCe
Confidence 9999988875433
No 3
>COG1690 RtcB Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-56 Score=428.28 Aligned_cols=220 Identities=47% Similarity=0.725 Sum_probs=211.5
Q ss_pred CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN 80 (257)
Q Consensus 1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN 80 (257)
||.+||.|+|+.+. .++..+++.++..|+.|.++.|+++..|+.++|+.|.+..+++..+|+.+..++..||||||+||
T Consensus 104 l~~~vp~G~g~~~~-~~~~~~~~~v~~~~~~~~v~~~~~~~~d~~~~e~~~~~~~~~~~~~~~~~~~~g~~qlgtlg~GN 182 (432)
T COG1690 104 LDRAIPRGVGTAGV-LPDRNTLQEVLTGGARWAVEQGLGVALDLERCEDGGVMTGADAAKISDRALQRGLGQLGSLGSGN 182 (432)
T ss_pred HHhhCCcccCCCcc-ccchhhhHHHhhccceeeecccccccccccccccccccccccccccchHhhhhhhhhccCccCCC
Confidence 57899999999988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094 81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ 160 (257)
Q Consensus 81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~ 160 (257)
||+|+|.|+++||+++|+.+||.. +++|||+||||||||||||+ +|+..+.+.+.++++.+|+++
T Consensus 183 hf~Evq~v~~~~d~~~a~~~gl~~-~~v~vm~hsGSrg~G~qi~~--------------~~~~~~~~~~~~~~~~~~~~~ 247 (432)
T COG1690 183 HFLEVQAVDRVYDEEAAAPMGLAE-GTVWVMIHTGSRGLGHQIAT--------------DFVRLAEQAMGRYGIAVPDRQ 247 (432)
T ss_pred cceEEEeccccccHhhHhhcCccc-ccEEEEEEeccccccchhHH--------------HHHHHHHHhhhhhcccCcchh
Confidence 999999999999999999999998 99999999999999999999 999988888888899999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeEE
Q psy10094 161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240 (257)
Q Consensus 161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~V 240 (257)
|+|+|++|+++++|+.+|++|+|||++||++|++++++.|..+| .++|||+||++|.|.|++ +++||
T Consensus 248 la~~~~~s~e~~~y~~am~~A~~~a~~Nr~~i~~~~~~~~~~~~---------~l~~~v~hN~~~~e~h~~----~~~~v 314 (432)
T COG1690 248 LACVPVDSEDGQAYLAAMAAAANYARANRQLITERVRRALQEVT---------DLLYDVHHNLAKKETHNG----EEVIV 314 (432)
T ss_pred hhccccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhe---------eeeeecchhhhhHHHhcc----cceee
Confidence 99999999999999999999999999999999999999998877 478999999999999975 68999
Q ss_pred EcCCCCCCC
Q psy10094 241 HRKVSEPSH 249 (257)
Q Consensus 241 HRKGA~p~~ 249 (257)
|||||+++.
T Consensus 315 hRKgAt~A~ 323 (432)
T COG1690 315 HRKGATRAF 323 (432)
T ss_pred eccccCHhh
Confidence 999999876
No 4
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=100.00 E-value=7.2e-51 Score=383.73 Aligned_cols=143 Identities=31% Similarity=0.469 Sum_probs=127.1
Q ss_pred hcCCCCCccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHH
Q psy10094 67 KRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQME 146 (257)
Q Consensus 67 ~r~~~qLGTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~ 146 (257)
+++..|||||||||||||||+||+|||+++|++|||++ |++||||||||||||++||+ +|++.+.
T Consensus 112 ~~~~~qLGTlGgGNHFiEiq~v~~i~d~~~a~~~Gl~~-g~v~l~iHSGSRglG~~i~~--------------~~~~~~~ 176 (356)
T TIGR03073 112 HGFRSSLGTIGGGNHFAELQQVDQIYDADALATLGLDA-KQLLLLVHSGSRGLGQAILR--------------RHVDYFG 176 (356)
T ss_pred ccchhccCCCCCCcceEEEEeeccccCHHHHHHcCCCC-CcEEEEEecCCchhHHHHHH--------------HHHHHHH
Confidence 67788999999999999999999999999999999997 99999999999999999999 6654431
Q ss_pred HHHHhCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccce
Q psy10094 147 KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKT 226 (257)
Q Consensus 147 ~~~~~~gi~~~d~~la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~ 226 (257)
. .++|++|++|++||.+|++|+|||++||++|+++++++|... ..++||++|||+|+
T Consensus 177 ----~----------~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~v~~~l~~~---------~~~~~d~~HN~~~~ 233 (356)
T TIGR03073 177 ----H----------NGLPEGSPAAAAYLAQHDDALRFAKANRQLIARRILQRLRAK---------GDPLLDVNHNLVSP 233 (356)
T ss_pred ----H----------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cceEEEccccceee
Confidence 1 256789999999999999999999999999999999988432 35789999999999
Q ss_pred eeeecCCceeeeEEEcCCCCCCCCC
Q psy10094 227 EEHMVDGKQKTLLVHRKVSEPSHPG 251 (257)
Q Consensus 227 E~h~~~G~~~~~~VHRKGA~p~~~~ 251 (257)
|+| +| +++|||||||+|+...
T Consensus 234 E~~--~g--~~~~vhRKGAt~A~~g 254 (356)
T TIGR03073 234 ATI--EG--EDGWLHRKGATPADQG 254 (356)
T ss_pred eee--cC--ceEEEECccccccCCC
Confidence 986 56 5789999999998765
No 5
>PRK09588 hypothetical protein; Reviewed
Probab=100.00 E-value=4.7e-50 Score=380.44 Aligned_cols=143 Identities=31% Similarity=0.470 Sum_probs=126.0
Q ss_pred HhcCCCCCccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHH
Q psy10094 66 KKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQM 145 (257)
Q Consensus 66 ~~r~~~qLGTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~ 145 (257)
.+++..|||||||||||||||+||+|||+++|++|||++ |++||||||||||||++||+ +|++.+
T Consensus 122 ~~~~~~qLGTlGgGNHFiEiq~v~~i~d~~~a~~~gl~~-g~v~l~vHsGSRglG~~v~~--------------~~~~~~ 186 (376)
T PRK09588 122 QHPWRSSLGTIGGGNHFAELQQVDEIYDAELFALLGLDA-DQLLLLVHSGSRGLGQAILR--------------RHVASF 186 (376)
T ss_pred hhhhhhhcCCCCCCcceEEEEeeceecCHHHHHHcCCCC-CcEEEEEecCCchhHHHHHH--------------HHHHHh
Confidence 467888999999999999999999999999999999987 99999999999999999999 665433
Q ss_pred HHHHHhCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccc
Q psy10094 146 EKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAK 225 (257)
Q Consensus 146 ~~~~~~~gi~~~d~~la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~ 225 (257)
. ...+|++|++|++||.+|++|+|||++||++|+++++++| +. ++.++||++|||++
T Consensus 187 ~--------------~~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~i~~~l----~~-----~~~~~~d~~HN~~~ 243 (376)
T PRK09588 187 G--------------HNGLPEGSDDALAYLAEHDDALAFARANRQLIARRILQQL----RA-----EGEPVLDVAHNFVE 243 (376)
T ss_pred h--------------hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cc-----CCCeEEECcCccee
Confidence 1 1236889999999999999999999999999999999888 43 24678999999999
Q ss_pred eeeeecCCceeeeEEEcCCCCCCCC
Q psy10094 226 TEEHMVDGKQKTLLVHRKVSEPSHP 250 (257)
Q Consensus 226 ~E~h~~~G~~~~~~VHRKGA~p~~~ 250 (257)
+|.| +| +++|||||||+|+..
T Consensus 244 ~e~~--~~--~~~~vhRKGAt~A~g 264 (376)
T PRK09588 244 PCQV--GG--EDGWLHRKGATPSDQ 264 (376)
T ss_pred EEEE--CC--eeEEEECcccccCCC
Confidence 9976 45 578999999998853
No 6
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=68.59 E-value=24 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=33.6
Q ss_pred CCCccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccC-chhhhhhhhc
Q psy10094 71 PQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSG-SRGFGHQVAT 125 (257)
Q Consensus 71 ~qLGTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSG-SRglG~~Va~ 125 (257)
-+-||+|||+=+|-+.- .+.+.+-|.|.|- .++||.++=.
T Consensus 6 A~aGtleSsD~~V~v~p---------------~~~~gi~i~l~S~v~~~fg~~i~~ 46 (87)
T PF06857_consen 6 AVAGTLESSDLEVTVEP---------------AESGGIEIELESSVVKQFGDQIRA 46 (87)
T ss_pred eEEcccccCcEEEEEEe---------------CCCCcEEEEEEchHHhhhHHHHHH
Confidence 36899999999999886 2237799999999 9999998876
No 7
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=33.69 E-value=2.1e+02 Score=22.42 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCch-hhhhhhhc
Q psy10094 72 QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSR-GFGHQVAT 125 (257)
Q Consensus 72 qLGTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSR-glG~~Va~ 125 (257)
.-||+||||=.|=+.-. .++.+-|-|=|--. +||+++=.
T Consensus 8 ~aGtveSsDl~V~veP~---------------~~~~i~i~i~SsV~~~Fg~~i~~ 47 (92)
T PRK13253 8 VAGTLESSDVMIRIAPA---------------DTQGIDIQLESSVEKQFGDQIRA 47 (92)
T ss_pred EecccccCCEEEEEEeC---------------CCCcEEEEEEeeHHhhhHHHHHH
Confidence 67999999987777652 23668999999888 99998876
No 8
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=30.50 E-value=69 Score=23.77 Aligned_cols=24 Identities=38% Similarity=0.593 Sum_probs=20.1
Q ss_pred ccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEcc
Q psy10094 74 GTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHS 114 (257)
Q Consensus 74 GTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHS 114 (257)
+++ |||=.|||++ .+|+|.-+.|+
T Consensus 42 ~~~-GGv~~I~I~K----------------~dgkVl~v~H~ 65 (66)
T PF15631_consen 42 GML-GGVFYIEIRK----------------KDGKVLNVTHT 65 (66)
T ss_pred Ccc-CCeEEEEEEc----------------cCCeEEEEEec
Confidence 455 7999999997 35999999997
No 9
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=27.23 E-value=62 Score=25.30 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=14.8
Q ss_pred CeeEEEEEEeeeeechhHHHhcCCCCCceEEE
Q psy10094 79 GNHYAEIQIVDEIYDKWAASKMGIEDVGQVCV 110 (257)
Q Consensus 79 GNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l 110 (257)
|-|-+||.+ .+++++||.+..|++|
T Consensus 58 ~en~~Einr-------qlgeKLGl~dGeQvfL 82 (87)
T PF09263_consen 58 GENVAEINR-------QLGEKLGLSDGEQVFL 82 (87)
T ss_dssp ---EEEEEH-------HHHHHTT--TT-EEEE
T ss_pred cccHHHHHH-------HHHHhhCCCcCCeEee
Confidence 678888864 8999999998555654
No 10
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=26.36 E-value=47 Score=30.22 Aligned_cols=23 Identities=35% Similarity=0.785 Sum_probs=18.0
Q ss_pred CCeeEEEEEEeeeeechhHHHhcCCCCCceEEEE
Q psy10094 78 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVM 111 (257)
Q Consensus 78 gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~ 111 (257)
-|.||-|++. | +|||.+|++||+
T Consensus 205 ~~~~~gElGi-D----------l~iD~~g~iWli 227 (262)
T PF14398_consen 205 FGGHLGELGI-D----------LGIDKNGKIWLI 227 (262)
T ss_pred cCCceeEEEE-E----------EEEcCCCCEEEE
Confidence 3556999994 5 788888999985
No 11
>PF09899 DUF2126: Putative amidoligase enzyme (DUF2126); InterPro: IPR018667 This domain is found in bacterial transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown.
Probab=25.50 E-value=36 Score=36.32 Aligned_cols=12 Identities=50% Similarity=0.864 Sum_probs=10.0
Q ss_pred CCCccCCCCeeEE
Q psy10094 71 PQLGTLGAGNHYA 83 (257)
Q Consensus 71 ~qLGTLGgGNHFi 83 (257)
.+-|| |||||++
T Consensus 429 rhtGT-GGGNHvt 440 (819)
T PF09899_consen 429 RHTGT-GGGNHVT 440 (819)
T ss_pred ccccC-CCCCeEe
Confidence 47788 9999985
No 12
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=25.47 E-value=2.3e+02 Score=19.38 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=18.7
Q ss_pred eeeeechhHHHhcCCCCCceEEEEEcc
Q psy10094 88 VDEIYDKWAASKMGIEDVGQVCVMIHS 114 (257)
Q Consensus 88 vd~i~d~~~a~~~Gl~~~g~v~l~IHS 114 (257)
+--....+.+..|+|.+..+|+++|=.
T Consensus 33 l~a~it~~~~~~L~L~~G~~V~~~ik~ 59 (64)
T PF03459_consen 33 LTARITPESAEELGLKPGDEVYASIKA 59 (64)
T ss_dssp EEEEEEHHHHHHCT-STT-EEEEEE-G
T ss_pred EEEEEcHHHHHHcCCCCCCEEEEEEeh
Confidence 334457899999999997779998743
No 13
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=25.02 E-value=62 Score=24.56 Aligned_cols=29 Identities=38% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCc
Q psy10094 81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 116 (257)
Q Consensus 81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGS 116 (257)
.||+|. ++.|+++||.+.+.|.|.-..||
T Consensus 30 ~~v~in-------p~dA~~~Gi~~Gd~V~v~s~~G~ 58 (110)
T PF01568_consen 30 PFVEIN-------PEDAAKLGIKDGDWVRVSSPRGS 58 (110)
T ss_dssp EEEEEE-------HHHHHHCT--TTCEEEEEETTEE
T ss_pred CEEEEc-------HHHHHHhcCcCCCEEEEEeccce
Confidence 688875 68899999998666777666663
No 14
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=23.85 E-value=1.5e+02 Score=27.49 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=59.9
Q ss_pred ccccCCCCCCccCCCHHHHHHHHHccchhh-hhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCeeE
Q psy10094 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWS-LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHY 82 (257)
Q Consensus 4 ~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~-v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGNHF 82 (257)
.||.=||+.-+ |.++.+++|+.|++-. +.+. - -.||+.+++.+...+.+.+
T Consensus 74 fiPltVGGGI~---s~eD~~~ll~aGADKVSINsa--------------A--v~~p~lI~~~a~~FGsQci--------- 125 (256)
T COG0107 74 FIPLTVGGGIR---SVEDARKLLRAGADKVSINSA--------------A--VKDPELITEAADRFGSQCI--------- 125 (256)
T ss_pred eeeeEecCCcC---CHHHHHHHHHcCCCeeeeChh--------------H--hcChHHHHHHHHHhCCceE---------
Confidence 47888886432 7889999999997532 1111 1 2467788887776554321
Q ss_pred EEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcc
Q psy10094 83 AEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMA 135 (257)
Q Consensus 83 iEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a 135 (257)
+-.||--++. =| +.+...+.+|+|-+..|....+ |.++.+++.
T Consensus 126 --VvaIDakr~~-----~g--~~~~~~v~~~gGr~~t~~d~~~-Wa~~~e~~G 168 (256)
T COG0107 126 --VVAIDAKRVP-----DG--ENGWYEVFTHGGREDTGLDAVE-WAKEVEELG 168 (256)
T ss_pred --EEEEEeeecc-----CC--CCCcEEEEecCCCcCCCcCHHH-HHHHHHHcC
Confidence 2234433322 01 2367999999999999999887 776665554
Done!