Query psy10094
Match_columns 257
No_of_seqs 187 out of 878
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:43:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dwr_B PHO HYP2 intein, tRNA-s 100.0 2E-74 6.9E-79 561.0 22.8 242 1-257 123-369 (487)
2 2epg_A Hypothetical protein TT 100.0 1.3E-74 4.4E-79 561.6 20.2 237 1-257 134-375 (487)
3 2rbd_A BH2358 protein; putativ 24.4 2.3E+02 0.0079 22.5 7.2 20 140-159 61-80 (171)
4 3mb2_B 4-oxalocrotonate tautom 23.4 1.1E+02 0.0037 22.1 4.3 24 189-212 18-41 (72)
5 4fs3_A Enoyl-[acyl-carrier-pro 19.6 58 0.002 27.5 2.6 23 106-128 6-29 (256)
6 2ksn_A Ubiquitin domain-contai 16.3 2.2E+02 0.0077 22.9 5.1 47 172-222 56-102 (137)
7 3off_A LDLR chaperone BOCA; ME 14.5 40 0.0014 25.4 0.3 15 102-117 50-64 (90)
8 2quo_A Heat-labIle enterotoxin 13.8 1.8E+02 0.0062 22.1 3.8 30 75-120 84-115 (126)
9 3ofh_A LDLR chaperone MESD; mo 12.0 77 0.0026 23.8 1.2 16 101-117 48-63 (89)
10 4gkb_A 3-oxoacyl-[acyl-carrier 11.8 1.7E+02 0.0058 25.1 3.5 22 106-128 7-28 (258)
No 1
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A*
Probab=100.00 E-value=2e-74 Score=560.99 Aligned_cols=242 Identities=48% Similarity=0.837 Sum_probs=232.1
Q ss_pred CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN 80 (257)
Q Consensus 1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN 80 (257)
||++||+|+|++++++++..+++++|..|++|+++.||+|++|++++|+.|+|..+||+.+|+++++|+..|||||||||
T Consensus 123 i~~~iP~G~g~~~~~~~~~~~~~~~l~~g~~w~~~~g~~~~~dl~~~ee~g~~~~~d~~~v~~~~~~r~~~qLGTLGgGN 202 (487)
T 4dwr_B 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGN 202 (487)
T ss_dssp HHHHSCCSSSTTCCCCCCGGGCHHHHHHTHHHHHHTTSSCGGGGGGSGGGGCCTTCCGGGSCHHHHHHHGGGTTCCCSSS
T ss_pred HHhhCCCCcCccCccccchhhhhHHHhhhHHHHHhcccchHhHHHHHHhcCCcccCChHHHhHHHHhhhhhhccCCCCCc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094 81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ 160 (257)
Q Consensus 81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~ 160 (257)
||||||+||+|||+++|++|||++ |+|||||||||||||+|||+ +|++.+.++++++++++||++
T Consensus 203 HFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~~Ia~--------------~~~~~a~~~~~~~~~~~pd~~ 267 (487)
T 4dwr_B 203 HFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVAS--------------DYLRIMERAIRKYRIPWPDRE 267 (487)
T ss_dssp CEEEEEEEEEESCHHHHHHTTCCT-TBEEEEEEECCHHHHHHHHH--------------HHHHHHHHHHHHHTCCCCSTT
T ss_pred eeEEEeeeehhcCHHHHHHcCCCc-CcEEEEEECCCCcccHHHHH--------------HHHHHHHHHHHHcCCCCCChh
Confidence 999999999999999999999997 99999999999999999999 899989899999999999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC-CCCceeeEEecCcccceeeeecCCceeeeE
Q psy10094 161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239 (257)
Q Consensus 161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~-~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~ 239 (257)
|+|+|++|++|++||.+|++|+|||++||++|+++++++|+++|+.+++ +++++++|||+|||++.|+|.++|+.+++|
T Consensus 268 la~~~~~s~eg~~Yl~am~~A~~yA~~NR~~i~~~v~~~~~~~~~~~~~~~l~~~~~~dv~HN~~~~E~h~~~g~~~~~~ 347 (487)
T 4dwr_B 268 LVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347 (487)
T ss_dssp CCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCCCEEEEEESEEEEEEEEEETTEEEEEE
T ss_pred hccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCcccccccceeeeeecccceeeeeeeccccceEE
Confidence 9999999999999999999999999999999999999999999998765 577899999999999999999999988999
Q ss_pred EEcCCC----CCCCCCCCCCCC
Q psy10094 240 VHRKVS----EPSHPGVSRNKK 257 (257)
Q Consensus 240 VHRKGA----~p~~~~~p~~~~ 257 (257)
|||||| +|+||++|..|+
T Consensus 348 VHRKGAt~A~~~~~~~~p~~~~ 369 (487)
T 4dwr_B 348 VHRKGATRAFPPGHEAVPRLYR 369 (487)
T ss_dssp EEEESEEECCCTTCTTSCGGGT
T ss_pred EEecccccccCCCCcccchhhh
Confidence 999999 577899998763
No 2
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-74 Score=561.61 Aligned_cols=237 Identities=49% Similarity=0.777 Sum_probs=217.9
Q ss_pred CCcccccCCCCCC-ccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCC
Q psy10094 1 MFDHIPVGVGSKG-IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAG 79 (257)
Q Consensus 1 l~~~iP~G~g~~~-~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgG 79 (257)
||++||+|+|+++ .++++..+++++++.|++|+++.||+|.+|++++|++|||.++||+.+|+++++|+..||||||||
T Consensus 134 l~~~iP~G~g~~~~~~~~~~~~~~~~~~~g~~w~~~~g~~~~~dl~~~e~~g~~~~~~~~~~~~~~~~r~~~qLGTLGgG 213 (487)
T 2epg_A 134 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTLGSG 213 (487)
T ss_dssp HHHHSCC------CCCCCCHHHHHHHHHHTHHHHHHTTSSCGGGGGGBGGGGCCTTCCGGGSCHHHHHHHGGGTTCCCSS
T ss_pred HHHhCCCCCCCCCCcccCCHHHHHHHHhccchhhhhccccchhhHHHHHhcccccccChhhhcHHHHhhhhhhcCCCCCC
Confidence 4789999999988 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCc
Q psy10094 80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDR 159 (257)
Q Consensus 80 NHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~ 159 (257)
|||||||+||+|||+++|++|||++ |+|||||||||||||+|||+ +|++.+.+.++++++++||+
T Consensus 214 NHFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~qIa~--------------~~~~~a~~~~~~~~i~~pd~ 278 (487)
T 2epg_A 214 NHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQ--------------DYVERFLKVAPRYGIELVDK 278 (487)
T ss_dssp SCEEEEEEEEEESCHHHHHHHTCCT-TEEEEEEEECCHHHHHHHHH--------------HHHHHHHTTHHHHTCCCSSG
T ss_pred CcEEEEEEeeEeccHhHHHhcCCCC-CcEEEEEecCCchhHHHHHH--------------HHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999999999999986 99999999999999999999 88888888888999999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeE
Q psy10094 160 QLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239 (257)
Q Consensus 160 ~la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~ 239 (257)
+|+|+|++|++|++||.+|++|+|||++||++|+++|+++|.++ +.++.++++.++|||+|||||+|+| +| +++|
T Consensus 279 ~La~l~~~s~eg~~Yl~am~~A~nyA~~NR~~i~~~v~~~~~~~-~~~~~~~~~~~~~dv~HN~a~~E~h--~~--~~~~ 353 (487)
T 2epg_A 279 QLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKV-GFTPRDHGLRVLYDLAHNNAKFEEH--RG--RRVL 353 (487)
T ss_dssp GGCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHCCEEEEEEESEEEEEEEE--TT--EEEE
T ss_pred cceeEeCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCcccCCcceEEEeecCccccccc--CC--ceEE
Confidence 99999999999999999999999999999999999999999988 7544445678899999999999998 55 6899
Q ss_pred EEcCCC----CCCCCCCCCCCC
Q psy10094 240 VHRKVS----EPSHPGVSRNKK 257 (257)
Q Consensus 240 VHRKGA----~p~~~~~p~~~~ 257 (257)
|||||| ||+||++|+.|+
T Consensus 354 VhRKGAtrA~~~g~~~~p~~y~ 375 (487)
T 2epg_A 354 VHRKGATRAFGPGHPEVPEEYR 375 (487)
T ss_dssp EEEESCEECCCTTCTTSCTTTT
T ss_pred EEccccccCCCCCCccccchhh
Confidence 999999 788999998874
No 3
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=24.40 E-value=2.3e+02 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhCCCCCCCc
Q psy10094 140 DALVQMEKAMKRDNIETNDR 159 (257)
Q Consensus 140 ~~~~~~~~~~~~~gi~~~d~ 159 (257)
.+++.+.+.++..|++.|..
T Consensus 61 ~~i~~l~~~~~~~g~p~P~~ 80 (171)
T 2rbd_A 61 DENHQLEELLRSNGVGLPPA 80 (171)
T ss_dssp HHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCC
Confidence 34556777778889888753
No 4
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=23.42 E-value=1.1e+02 Score=22.12 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCC
Q psy10094 189 RSSMTFLCRQAFAKQFNTTPDDLD 212 (257)
Q Consensus 189 R~~i~~~v~~~~~~~~~~~~~~~~ 212 (257)
++.++..+-.+|.+++|++|..++
T Consensus 18 KralaeE~T~if~evLGcpPgsV~ 41 (72)
T 3mb2_B 18 KQAFAAEASAIFQRVIGTPPGRLQ 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEE
Confidence 345566677789999999987543
No 5
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=19.60 E-value=58 Score=27.47 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=17.7
Q ss_pred ceEEEEEc-cCchhhhhhhhcchh
Q psy10094 106 GQVCVMIH-SGSRGFGHQVATGKC 128 (257)
Q Consensus 106 g~v~l~IH-SGSRglG~~Va~~~~ 128 (257)
|.++|+.= |||||+|..||..+.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la 29 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLD 29 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHH
Confidence 77877764 356999999998544
No 6
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=16.28 E-value=2.2e+02 Score=22.88 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCc
Q psy10094 172 QDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHN 222 (257)
Q Consensus 172 ~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN 222 (257)
++.|.++.+|+....++-...++.|.++- |.+...=++..+||--=|
T Consensus 56 ~EIW~ALraA~~~~e~~Dl~tAQ~IldaA----gItvp~gdL~~cYDe~G~ 102 (137)
T 2ksn_A 56 KEIWDALKAAAHAFESNDHELAQAIIDGA----NITLPHGALTECYDELGN 102 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH----SCBCSSCCSSEEEETTTE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCcccCCcHHHHHhccCC
Confidence 68999999999988888888888877765 654333356678886444
No 7
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=14.50 E-value=40 Score=25.41 Aligned_cols=15 Identities=13% Similarity=0.578 Sum_probs=12.0
Q ss_pred CCCCceEEEEEccCch
Q psy10094 102 IEDVGQVCVMIHSGSR 117 (257)
Q Consensus 102 l~~~g~v~l~IHSGSR 117 (257)
|++ +.+.+|++-||-
T Consensus 50 Id~-dr~ifmf~DGs~ 64 (90)
T 3off_A 50 VDD-NRAIFLFKDGTQ 64 (90)
T ss_dssp EET-TEEEEEESSGGG
T ss_pred ecC-CEEEEEEcChHH
Confidence 344 889999999975
No 8
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=13.85 E-value=1.8e+02 Score=22.12 Aligned_cols=30 Identities=33% Similarity=0.718 Sum_probs=20.4
Q ss_pred cCCCC--eeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhh
Q psy10094 75 TLGAG--NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120 (257)
Q Consensus 75 TLGgG--NHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG 120 (257)
+||.| .||+.|.. +. ||.+|++...|---|
T Consensus 84 slgdgvkdhyvdisl---------------da-gqyvlvmkanssysg 115 (126)
T 2quo_A 84 SLGDGVKDHYVDISL---------------DA-GQYVLVMKANSSYSG 115 (126)
T ss_dssp ECCCSSSCEEEEEEE---------------CS-EEEEEEEEESSCCSS
T ss_pred HhcccchhceEEEEe---------------cC-CcEEEEEeccCcccC
Confidence 44554 79999985 44 998888776654333
No 9
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=12.00 E-value=77 Score=23.81 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.8
Q ss_pred CCCCCceEEEEEccCch
Q psy10094 101 GIEDVGQVCVMIHSGSR 117 (257)
Q Consensus 101 Gl~~~g~v~l~IHSGSR 117 (257)
-++. +.+.+|++-||-
T Consensus 48 ~I~~-dr~ifm~~DGs~ 63 (89)
T 3ofh_A 48 IVGS-DRAIFMLRDGSY 63 (89)
T ss_dssp ECST-TEEEEEESCGGG
T ss_pred EecC-CEEEEEEcChHH
Confidence 3454 899999999975
No 10
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=11.81 E-value=1.7e+02 Score=25.06 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=16.7
Q ss_pred ceEEEEEccCchhhhhhhhcchh
Q psy10094 106 GQVCVMIHSGSRGFGHQVATGKC 128 (257)
Q Consensus 106 g~v~l~IHSGSRglG~~Va~~~~ 128 (257)
|.++|+. -||||+|..||..+.
T Consensus 7 gKvalVT-Gas~GIG~aia~~la 28 (258)
T 4gkb_A 7 DKVVIVT-GGASGIGGAISMRLA 28 (258)
T ss_dssp TCEEEEE-TTTSHHHHHHHHHHH
T ss_pred CCEEEEe-CCCCHHHHHHHHHHH
Confidence 6666554 688999999998544
Done!