Your job contains 1 sequence.
>psy10094
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG
HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA
AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV
HRKVSEPSHPGVSRNKK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10094
(257 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032781 - symbol:CG9987 species:7227 "Drosophila m... 1096 5.3e-111 1
UNIPROTKB|Q561P3 - symbol:Q561P3 "tRNA-splicing ligase Rt... 1019 7.7e-103 1
UNIPROTKB|F1NYI3 - symbol:C1H22orf28 "Uncharacterized pro... 1017 1.3e-102 1
ZFIN|ZDB-GENE-040426-2096 - symbol:zgc:76871 "zgc:76871" ... 1016 1.6e-102 1
UNIPROTKB|Q5E9T9 - symbol:Q5E9T9 "tRNA-splicing ligase Rt... 1015 2.0e-102 1
UNIPROTKB|Q9Y3I0 - symbol:C22orf28 "tRNA-splicing ligase ... 1015 2.0e-102 1
UNIPROTKB|F2Z5V0 - symbol:C22orf28 "Uncharacterized prote... 1015 2.0e-102 1
UNIPROTKB|Q19PY3 - symbol:Q19PY3 "tRNA-splicing ligase Rt... 1015 2.0e-102 1
UNIPROTKB|A9CB42 - symbol:A9CB42 "tRNA-splicing ligase Rt... 1015 2.0e-102 1
UNIPROTKB|Q4R6X4 - symbol:QtsA-16939 "tRNA-splicing ligas... 1015 2.0e-102 1
MGI|MGI:106379 - symbol:D10Wsu52e "DNA segment, Chr 10, W... 1014 2.6e-102 1
RGD|1303261 - symbol:LOC362855 "P55" species:10116 "Rattu... 1014 2.6e-102 1
DICTYBASE|DDB_G0278481 - symbol:iliN "UPF0027 family prot... 955 4.7e-96 1
WB|WBGene00008877 - symbol:F16A11.2 species:6239 "Caenorh... 890 3.6e-89 1
GENEDB_PFALCIPARUM|PF11_0068 - symbol:PF11_0068 "hypothet... 811 8.5e-81 1
UNIPROTKB|Q8IIU6 - symbol:PF11_0068 "tRNA-splicing ligase... 811 8.5e-81 1
UNIPROTKB|Q8ZY09 - symbol:rtcB "tRNA-splicing ligase RtcB... 561 2.6e-54 1
UNIPROTKB|Q3Z899 - symbol:DET0823 "Putative uncharacteriz... 541 3.5e-52 1
TIGR_CMR|DET_0823 - symbol:DET_0823 "conserved hypothetic... 541 3.5e-52 1
UNIPROTKB|Q74CI9 - symbol:GSU1684 "Uncharacterized protei... 530 5.1e-51 1
TIGR_CMR|GSU_1684 - symbol:GSU_1684 "conserved hypothetic... 530 5.1e-51 1
UNIPROTKB|Q8TUS2 - symbol:rtcB "tRNA-splicing ligase RtcB... 491 6.6e-46 1
UNIPROTKB|P71930 - symbol:rtcB "RNA-splicing ligase RtcB"... 408 4.3e-38 1
UNIPROTKB|Q60CB4 - symbol:MCA0195 "Putative uncharacteriz... 392 2.1e-36 1
UNIPROTKB|Q3AFN5 - symbol:CHY_0177 "Putative uncharacteri... 288 5.1e-25 1
TIGR_CMR|CHY_0177 - symbol:CHY_0177 "conserved hypothetic... 288 5.1e-25 1
UNIPROTKB|P46850 - symbol:rtcB "RNA ligase" species:83333... 130 6.9e-06 1
>FB|FBgn0032781 [details] [associations]
symbol:CG9987 species:7227 "Drosophila melanogaster"
[GO:0022008 "neurogenesis" evidence=IMP] GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0046872 GO:GO:0008033
GO:GO:0003972 eggNOG:COG1690 GeneTree:ENSGT00390000015260 KO:K14415
OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AY119213
RefSeq:NP_609965.1 UniGene:Dm.13521 ProteinModelPortal:Q9VIW7
SMR:Q9VIW7 IntAct:Q9VIW7 MINT:MINT-832367 STRING:Q9VIW7
PaxDb:Q9VIW7 PRIDE:Q9VIW7 EnsemblMetazoa:FBtr0081205 GeneID:35220
KEGG:dme:Dmel_CG9987 UCSC:CG9987-RA FlyBase:FBgn0032781
InParanoid:Q9VIW7 OrthoDB:EOG4G79DG PhylomeDB:Q9VIW7
GenomeRNAi:35220 NextBio:792444 Bgee:Q9VIW7 Uniprot:Q9VIW7
Length = 506
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 215/254 (84%), Positives = 224/254 (88%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 374 HRKGSTRAFPPHHP 387
>UNIPROTKB|Q561P3 [details] [associations]
symbol:Q561P3 "tRNA-splicing ligase RtcB homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003972 "RNA
ligase (ATP) activity" evidence=ISS] [GO:0006388 "tRNA splicing,
via endonucleolytic cleavage and ligation" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0072669
GO:GO:0006388 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 KO:K14415
OrthoDB:EOG4DFPN7 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
CTD:51493 EMBL:BC093459 RefSeq:NP_001025674.1 UniGene:Str.24196
ProteinModelPortal:Q561P3 STRING:Q561P3 PRIDE:Q561P3
Ensembl:ENSXETT00000025212 GeneID:595066 KEGG:xtr:595066
Xenbase:XB-GENE-974751 InParanoid:Q561P3 OMA:MAIEEKG Bgee:Q561P3
Uniprot:Q561P3
Length = 505
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 198/254 (77%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAE+Q+VD+IYD++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|F1NYI3 [details] [associations]
symbol:C1H22orf28 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0003972 "RNA ligase (ATP) activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0017166
"vinculin binding" evidence=IEA] [GO:0072669 "tRNA-splicing ligase
complex" evidence=IEA] GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
GeneTree:ENSGT00390000015260 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AADN02006278 IPI:IPI00571823 Ensembl:ENSGALT00000020590
Uniprot:F1NYI3
Length = 507
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 200/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 149 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 208
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 209 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLG 268
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 269 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAA 314
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 315 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLV 374
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 375 HRKGSTRAFPPHHP 388
>ZFIN|ZDB-GENE-040426-2096 [details] [associations]
symbol:zgc:76871 "zgc:76871" species:7955 "Danio
rerio" [GO:0003972 "RNA ligase (ATP) activity" evidence=IEA;ISS]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISS] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] ZFIN:ZDB-GENE-040426-2096 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0072669 GO:GO:0006388
GO:GO:0003972 eggNOG:COG1690 GeneTree:ENSGT00390000015260
HOVERGEN:HBG081383 KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7
HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AL845512 EMBL:BC065987
IPI:IPI00770937 RefSeq:NP_998268.1 UniGene:Dr.89610
ProteinModelPortal:Q6NZS4 STRING:Q6NZS4 PRIDE:Q6NZS4
Ensembl:ENSDART00000111348 GeneID:406376 KEGG:dre:406376
InParanoid:Q6NZS4 NextBio:20817987 ArrayExpress:Q6NZS4 Bgee:Q6NZS4
Uniprot:Q6NZS4
Length = 505
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 199/254 (78%), Positives = 214/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S+EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVDG+QKTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|Q5E9T9 [details] [associations]
symbol:Q5E9T9 "tRNA-splicing ligase RtcB homolog"
species:9913 "Bos taurus" [GO:0001890 "placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0072669 "tRNA-splicing
ligase complex" evidence=ISS] [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017166 "vinculin binding"
evidence=IEA] GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0072669 GO:GO:0006388 GO:GO:0003972 EMBL:BT020831
EMBL:BC104498 IPI:IPI00700295 RefSeq:NP_001015631.1
UniGene:Bt.91477 ProteinModelPortal:Q5E9T9 STRING:Q5E9T9
PRIDE:Q5E9T9 Ensembl:ENSBTAT00000014699 GeneID:525106
KEGG:bta:525106 CTD:100928215 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 InParanoid:Q5E9T9
KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7 NextBio:20874099
HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 Uniprot:Q5E9T9
Length = 505
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|Q9Y3I0 [details] [associations]
symbol:C22orf28 "tRNA-splicing ligase RtcB homolog"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017166 "vinculin binding" evidence=IPI] [GO:0007160
"cell-matrix adhesion" evidence=NAS] [GO:0034446 "substrate
adhesion-dependent cell spreading" evidence=NAS] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IDA]
[GO:0003972 "RNA ligase (ATP) activity" evidence=IDA] [GO:0072669
"tRNA-splicing ligase complex" evidence=IDA] GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 EMBL:CH471095 GO:GO:0007160
GO:GO:0034446 GO:GO:0072669 EMBL:AL021937 GO:GO:0006388
GO:GO:0003972 eggNOG:COG1690 HOVERGEN:HBG081383 KO:K14415
OMA:GRMLNAD OrthoDB:EOG4DFPN7 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AL050255 EMBL:AF161466 EMBL:AF155658 EMBL:CR457175
EMBL:CR456450 EMBL:AK312503 EMBL:BC000151 EMBL:BC002970
EMBL:BC010308 EMBL:BC016707 EMBL:AL137272 IPI:IPI00550689
PIR:T46344 RefSeq:NP_055121.1 UniGene:Hs.474643
ProteinModelPortal:Q9Y3I0 SMR:Q9Y3I0 IntAct:Q9Y3I0
MINT:MINT-4654730 STRING:Q9Y3I0 PhosphoSite:Q9Y3I0 DMDM:74753486
UCD-2DPAGE:Q9Y3I0 PaxDb:Q9Y3I0 PeptideAtlas:Q9Y3I0 PRIDE:Q9Y3I0
DNASU:51493 Ensembl:ENST00000216038 GeneID:51493 KEGG:hsa:51493
UCSC:uc003amm.2 CTD:51493 GeneCards:GC22M032783 HGNC:HGNC:26935
HPA:HPA001103 MIM:613901 neXtProt:NX_Q9Y3I0 PharmGKB:PA145149387
InParanoid:Q9Y3I0 PhylomeDB:Q9Y3I0 ChiTaRS:C22orf28
GenomeRNAi:51493 NextBio:55157 ArrayExpress:Q9Y3I0 Bgee:Q9Y3I0
CleanEx:HS_C22orf28 Genevestigator:Q9Y3I0
GermOnline:ENSG00000100220 Uniprot:Q9Y3I0
Length = 505
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|F2Z5V0 [details] [associations]
symbol:C22orf28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072669 "tRNA-splicing ligase complex" evidence=IEA]
[GO:0017166 "vinculin binding" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003972 "RNA ligase (ATP)
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
GeneTree:ENSGT00390000015260 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:CU407156 ProteinModelPortal:F2Z5V0 SMR:F2Z5V0 PRIDE:F2Z5V0
Ensembl:ENSSSCT00000000167 ArrayExpress:F2Z5V0 Uniprot:F2Z5V0
Length = 505
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|Q19PY3 [details] [associations]
symbol:Q19PY3 "tRNA-splicing ligase RtcB homolog"
species:9823 "Sus scrofa" [GO:0072669 "tRNA-splicing ligase
complex" evidence=ISS] [GO:0003972 "RNA ligase (ATP) activity"
evidence=ISS] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
eggNOG:COG1690 HOVERGEN:HBG081383 KO:K14415 HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:DQ508262 EMBL:DQ508263 RefSeq:NP_001116458.1
UniGene:Ssc.79842 STRING:Q19PY3 GeneID:733658 KEGG:ssc:733658
Uniprot:Q19PY3
Length = 505
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|A9CB42 [details] [associations]
symbol:A9CB42 "tRNA-splicing ligase RtcB homolog"
species:9555 "Papio anubis" [GO:0003972 "RNA ligase (ATP) activity"
evidence=ISS] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] [GO:0072669 "tRNA-splicing
ligase complex" evidence=ISS] GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
HOVERGEN:HBG081383 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
CTD:51493 EMBL:DP000487 RefSeq:NP_001162246.1 UniGene:Pan.3492
ProteinModelPortal:A9CB42 PRIDE:A9CB42 GeneID:100137237
Uniprot:A9CB42
Length = 505
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>UNIPROTKB|Q4R6X4 [details] [associations]
symbol:QtsA-16939 "tRNA-splicing ligase RtcB homolog"
species:9541 "Macaca fascicularis" [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0072669 GO:GO:0006388
GO:GO:0003972 HOVERGEN:HBG081383 HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
EMBL:AB169056 ProteinModelPortal:Q4R6X4 PRIDE:Q4R6X4 Uniprot:Q4R6X4
Length = 505
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>MGI|MGI:106379 [details] [associations]
symbol:D10Wsu52e "DNA segment, Chr 10, Wayne State University
52, expressed" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0001890 "placenta development" evidence=IMP]
[GO:0003972 "RNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISO] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0017166 "vinculin
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO] MGI:MGI:106379 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0001701 GO:GO:0001890 GO:GO:0072669
GO:GO:0006388 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383 KO:K14415
OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233 PANTHER:PTHR11118
Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288 EMBL:AY424364
EMBL:AK145891 EMBL:AK145916 EMBL:AK149885 EMBL:AK150376
EMBL:AK150470 EMBL:AK151042 EMBL:AK151182 EMBL:AK151932
EMBL:AK152144 EMBL:AK153434 EMBL:AK168038 EMBL:AK172175
EMBL:BC003288 IPI:IPI00116850 RefSeq:NP_663397.1 UniGene:Mm.9257
ProteinModelPortal:Q99LF4 SMR:Q99LF4 IntAct:Q99LF4 STRING:Q99LF4
PhosphoSite:Q99LF4 PaxDb:Q99LF4 PRIDE:Q99LF4 DNASU:28088
Ensembl:ENSMUST00000001834 GeneID:28088 KEGG:mmu:28088
UCSC:uc007gni.1 CTD:28088 InParanoid:Q99LF4 NextBio:306634
Bgee:Q99LF4 Genevestigator:Q99LF4 GermOnline:ENSMUSG00000001783
Uniprot:Q99LF4
Length = 505
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>RGD|1303261 [details] [associations]
symbol:LOC362855 "P55" species:10116 "Rattus norvegicus"
[GO:0001701 "in utero embryonic development" evidence=ISO]
[GO:0001890 "placenta development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003972 "RNA ligase (ATP)
activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISO;ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0017166 "vinculin
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO;ISS] RGD:1303261 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0072669 GO:GO:0006388 GO:GO:0003972
eggNOG:COG1690 GeneTree:ENSGT00390000015260 HOVERGEN:HBG081383
KO:K14415 OMA:GRMLNAD OrthoDB:EOG4DFPN7 HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:AY572415 EMBL:BC078924 IPI:IPI00209916
RefSeq:NP_997497.1 UniGene:Rn.11875 ProteinModelPortal:Q6AYT3
SMR:Q6AYT3 MINT:MINT-4576391 STRING:Q6AYT3 PhosphoSite:Q6AYT3
PRIDE:Q6AYT3 Ensembl:ENSRNOT00000006570 GeneID:362855
KEGG:rno:362855 UCSC:RGD:1303261 InParanoid:Q6AYT3 NextBio:681535
Genevestigator:Q6AYT3 GermOnline:ENSRNOG00000004813 Uniprot:Q6AYT3
Length = 505
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 199/254 (78%), Positives = 215/254 (84%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+ GQVCVMIHSGSRG G
Sbjct: 207 VSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT DALV MEKAMKRD I NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372
Query: 241 HRKVSE----PSHP 250
HRK S P HP
Sbjct: 373 HRKGSTRAFPPHHP 386
>DICTYBASE|DDB_G0278481 [details] [associations]
symbol:iliN "UPF0027 family protein" species:44689
"Dictyostelium discoideum" [GO:0003972 "RNA ligase (ATP) activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] dictyBase:DDB_G0278481 GO:GO:0005524 GO:GO:0046872
EMBL:AAFI02000023 GO:GO:0008033 GO:GO:0003972 eggNOG:COG1690
KO:K14415 OMA:GRMLNAD HAMAP:MF_03144 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
RefSeq:XP_642393.1 ProteinModelPortal:Q54Y09 STRING:Q54Y09
EnsemblProtists:DDB0234075 GeneID:8621598 KEGG:ddi:DDB_G0278481
ProtClustDB:CLSZ2430783 Uniprot:Q54Y09
Length = 508
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 185/254 (72%), Positives = 206/254 (81%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDH+PVGVGSKG+IPMN + L +ALEMG+DWSL EGY W EDKEHCEEYGRMLNADP+K
Sbjct: 150 LFDHVPVGVGSKGVIPMNIKTLNQALEMGVDWSLGEGYAWVEDKEHCEEYGRMLNADPTK 209
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAKKRGLPQLGTLGAGNHY E+Q+VDEIYDK AA+KMGI+ GQ+C+MIHSGSRG G
Sbjct: 210 VSERAKKRGLPQLGTLGAGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSGSRGLG 269
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+L MEKAM RD+I ND+QLAC+RINS EGQDYL MAA
Sbjct: 270 HQVAT--------------DSLTLMEKAMARDHIHLNDKQLACSRINSTEGQDYLSGMAA 315
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNR SMTFL RQAFAK FN+TPDDLDMHVIYDVSHNIAK EEH V+G+ K LLV
Sbjct: 316 AANFAWVNRQSMTFLTRQAFAKAFNSTPDDLDMHVIYDVSHNIAKFEEHNVNGRPKKLLV 375
Query: 241 HRKVSE----PSHP 250
HRK + P HP
Sbjct: 376 HRKGATRAFAPHHP 389
>WB|WBGene00008877 [details] [associations]
symbol:F16A11.2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009886 "post-embryonic morphogenesis" evidence=IMP]
GO:GO:0005524 GO:GO:0040010 GO:GO:0046872 GO:GO:0008033
GO:GO:0009886 GO:GO:0003972 eggNOG:COG1690
GeneTree:ENSGT00390000015260 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 EMBL:Z81505 PIR:T21006 RefSeq:NP_492498.1
ProteinModelPortal:P90838 SMR:P90838 STRING:P90838 PaxDb:P90838
EnsemblMetazoa:F16A11.2 GeneID:184556 KEGG:cel:CELE_F16A11.2
UCSC:F16A11.2 CTD:184556 WormBase:F16A11.2 InParanoid:P90838
NextBio:925162 Uniprot:P90838
Length = 505
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 174/250 (69%), Positives = 196/250 (78%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+FDHIPVGVGS+G IPM A DL E LEMGMDW+LREGY WAEDKEHCEEYGRML AD SK
Sbjct: 147 LFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASK 206
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRGLPQLGTLGAGNHYAE+Q+VDEIYDK AAS MGI++ GQV VM+H GSRG G
Sbjct: 207 VSLRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDKHAASTMGIDEEGQVVVMLHCGSRGLG 266
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D+LV+MEKAM RD I ND+QLACARINS EG++Y MAA
Sbjct: 267 HQVAT--------------DSLVEMEKAMARDGIVVNDKQLACARINSVEGKNYFSGMAA 312
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AANFAWVNRS +TF R AF K F + DD+DM VIYDVSHN+AK EEHMVDG+ + L V
Sbjct: 313 AANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRQLCV 372
Query: 241 HRKVSEPSHP 250
HRK + + P
Sbjct: 373 HRKGATRAFP 382
>GENEDB_PFALCIPARUM|PF11_0068 [details] [associations]
symbol:PF11_0068 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
GO:GO:0005524 GO:GO:0046872 GO:GO:0008033 EMBL:AE014186
GO:GO:0003972 eggNOG:COG1690 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 ProtClustDB:CLSZ2430783 HOGENOM:HOG000220065
RefSeq:XP_001347744.1 ProteinModelPortal:Q8IIU6 PRIDE:Q8IIU6
EnsemblProtists:PF11_0068:mRNA GeneID:810620 KEGG:pfa:PF11_0068
EuPathDB:PlasmoDB:PF3D7_1105700 Uniprot:Q8IIU6
Length = 506
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 159/250 (63%), Positives = 191/250 (76%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK +CE+ GR L AD +
Sbjct: 148 LFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSLYADSNF 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSIRAKKRGITQMGTLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL+ MEK+M + I D+QLAC I+SKEGQ+YLK+M +
Sbjct: 268 HQIAT--------------DALIDMEKSMNKYKINVIDKQLACTPIHSKEGQNYLKAMGS 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH +DGK K LLV
Sbjct: 314 ACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHYIDGKIKKLLV 373
Query: 241 HRKVSEPSHP 250
HRK S + P
Sbjct: 374 HRKGSTRAFP 383
>UNIPROTKB|Q8IIU6 [details] [associations]
symbol:PF11_0068 "tRNA-splicing ligase RtcB homolog"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
GO:GO:0005524 GO:GO:0046872 GO:GO:0008033 EMBL:AE014186
GO:GO:0003972 eggNOG:COG1690 KO:K14415 OMA:GRMLNAD HAMAP:MF_03144
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 ProtClustDB:CLSZ2430783 HOGENOM:HOG000220065
RefSeq:XP_001347744.1 ProteinModelPortal:Q8IIU6 PRIDE:Q8IIU6
EnsemblProtists:PF11_0068:mRNA GeneID:810620 KEGG:pfa:PF11_0068
EuPathDB:PlasmoDB:PF3D7_1105700 Uniprot:Q8IIU6
Length = 506
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 159/250 (63%), Positives = 191/250 (76%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F+HIPVGVGS+G I N +L++AL +GMDW ++EGY W EDK +CE+ GR L AD +
Sbjct: 148 LFNHIPVGVGSQGFILCNQENLDDALCLGMDWCVKEGYSWIEDKLNCEDNGRSLYADSNF 207
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS+RAKKRG+ Q+GTLGAGNHYAEIQIVD+IYDK +A MGIE QVC+MIHSGSRG G
Sbjct: 208 VSIRAKKRGITQMGTLGAGNHYAEIQIVDQIYDKKSAKLMGIEKKNQVCIMIHSGSRGLG 267
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT DAL+ MEK+M + I D+QLAC I+SKEGQ+YLK+M +
Sbjct: 268 HQIAT--------------DALIDMEKSMNKYKINVIDKQLACTPIHSKEGQNYLKAMGS 313
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A NFAW+NRSSMTFL RQAF+K FN +PDDLDMHVIYDVSHNIAK EEH +DGK K LLV
Sbjct: 314 ACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIEEHYIDGKIKKLLV 373
Query: 241 HRKVSEPSHP 250
HRK S + P
Sbjct: 374 HRKGSTRAFP 383
>UNIPROTKB|Q8ZY09 [details] [associations]
symbol:rtcB "tRNA-splicing ligase RtcB" species:178306
"Pyrobaculum aerophilum str. IM2" [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IDA] [GO:0008452
"RNA ligase activity" evidence=TAS] GO:GO:0046872 GO:GO:0006388
EMBL:AE009441 GenomeReviews:AE009441_GR eggNOG:COG1690 KO:K14415
OMA:GRMLNAD InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 GO:GO:0008452 HOGENOM:HOG000220065
RefSeq:NP_559005.1 ProteinModelPortal:Q8ZY09 SMR:Q8ZY09
GeneID:1465422 KEGG:pai:PAE0998 ProtClustDB:CLSK899593
Uniprot:Q8ZY09
Length = 484
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 119/252 (47%), Positives = 163/252 (64%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVG G + ++ + E L G++W++++GY WAED E+ EE G ADPSK
Sbjct: 125 IFRLVPPGVGGTGHLRLSPSEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ EIQ+VD+IYD+ A GIE GQV VMIH+GSRGFG
Sbjct: 185 VSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKIAKLFGIEREGQVVVMIHTGSRGFG 244
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVAT D L+ ME+ M++ + DR+LA A + K +DY+K+MA+
Sbjct: 245 HQVAT--------------DYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMAS 290
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD--GKQKTL 238
AANFAW NR + R+AF K F + + + + V+YDV+HNIAK EEH+VD G + +
Sbjct: 291 AANFAWTNRHIIMHWVREAFKKVFGSI-EKVGLEVVYDVAHNIAKLEEHVVDEKGTVRKV 349
Query: 239 LVHRKVSEPSHP 250
VHRK + + P
Sbjct: 350 WVHRKGATRAFP 361
>UNIPROTKB|Q3Z899 [details] [associations]
symbol:DET0823 "Putative uncharacterized protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1690 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 OMA:MAIEEKG RefSeq:YP_181550.1
ProteinModelPortal:Q3Z899 SMR:Q3Z899 STRING:Q3Z899 PRIDE:Q3Z899
GeneID:3229904 KEGG:det:DET0823 PATRIC:21608705
ProtClustDB:CLSK837290 BioCyc:DETH243164:GJNF-824-MONOMER
Uniprot:Q3Z899
Length = 486
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 112/250 (44%), Positives = 155/250 (62%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G I ++ D++ + G +W+L +G +ED EE G + A+P +
Sbjct: 128 LFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGESEDISLTEECGSLSGANPDR 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG G
Sbjct: 188 VSPKAKTRGSSQLGTLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D + + + +++ I DRQLACA + S++GQ+YL +MA
Sbjct: 248 HQVCT--------------DYVQLLNETVRKYGINLPDRQLACAPLKSEDGQNYLAAMAC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AW NR +T R AF K F DL M+ IYDV+HNIAK EEHMVDGK + + V
Sbjct: 294 ASNYAWANRQCITQWARDAFMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDGKMQNVCV 353
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 354 HRKGATRSFP 363
>TIGR_CMR|DET_0823 [details] [associations]
symbol:DET_0823 "conserved hypothetical protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1690 KO:K14415
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 OMA:MAIEEKG RefSeq:YP_181550.1
ProteinModelPortal:Q3Z899 SMR:Q3Z899 STRING:Q3Z899 PRIDE:Q3Z899
GeneID:3229904 KEGG:det:DET0823 PATRIC:21608705
ProtClustDB:CLSK837290 BioCyc:DETH243164:GJNF-824-MONOMER
Uniprot:Q3Z899
Length = 486
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 112/250 (44%), Positives = 155/250 (62%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F IP GVG G I ++ D++ + G +W+L +G +ED EE G + A+P +
Sbjct: 128 LFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGESEDISLTEECGSLSGANPDR 187
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK RG QLGTLG+GNH+ E+Q+V EI+D AS G+++ GQV +IH+GSRG G
Sbjct: 188 VSPKAKTRGSSQLGTLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIHTGSRGLG 247
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQV T D + + + +++ I DRQLACA + S++GQ+YL +MA
Sbjct: 248 HQVCT--------------DYVQLLNETVRKYGINLPDRQLACAPLKSEDGQNYLAAMAC 293
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
A+N+AW NR +T R AF K F DL M+ IYDV+HNIAK EEHMVDGK + + V
Sbjct: 294 ASNYAWANRQCITQWARDAFMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDGKMQNVCV 353
Query: 241 HRKVSEPSHP 250
HRK + S P
Sbjct: 354 HRKGATRSFP 363
>UNIPROTKB|Q74CI9 [details] [associations]
symbol:GSU1684 "Uncharacterized protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE017180
GenomeReviews:AE017180_GR KO:K14415 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
HOGENOM:HOG000220065 RefSeq:NP_952735.1 ProteinModelPortal:Q74CI9
SMR:Q74CI9 GeneID:2687257 KEGG:gsu:GSU1684 PATRIC:22026217
ProtClustDB:CLSK828484 BioCyc:GSUL243231:GH27-1705-MONOMER
Uniprot:Q74CI9
Length = 485
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 114/255 (44%), Positives = 149/255 (58%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS G + ++ + E G W L+ GY W ED E EE+G AD +K
Sbjct: 125 LFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTEEHGCFTGADATK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS RA RG Q+GTLG+GNHY E+Q+ + I+D+ A GI QV +M H GSRG
Sbjct: 185 VSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQVAT + +F L MEK + I TNDR+LACA S+EGQDY +M
Sbjct: 245 FGHQVATDYLQ-------LF---LSVMEK---KYGIRTNDRELACAPFRSREGQDYFAAM 291
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A N A+ NR + R+ F+ F P DL M ++YDV+HN AK E H+VDGK++ L
Sbjct: 292 KCAVNMAFANRQVILHRIREVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKREL 351
Query: 239 LVHRK-VSEPSHPGV 252
LVHRK + PG+
Sbjct: 352 LVHRKGATRAFGPGM 366
>TIGR_CMR|GSU_1684 [details] [associations]
symbol:GSU_1684 "conserved hypothetical protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE017180 GenomeReviews:AE017180_GR KO:K14415 OMA:GRMLNAD
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
PROSITE:PS01288 HOGENOM:HOG000220065 RefSeq:NP_952735.1
ProteinModelPortal:Q74CI9 SMR:Q74CI9 GeneID:2687257
KEGG:gsu:GSU1684 PATRIC:22026217 ProtClustDB:CLSK828484
BioCyc:GSUL243231:GH27-1705-MONOMER Uniprot:Q74CI9
Length = 485
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 114/255 (44%), Positives = 149/255 (58%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS G + ++ + E G W L+ GY W ED E EE+G AD +K
Sbjct: 125 LFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTEEHGCFTGADATK 184
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIV--DEIYDKWAASKMGIEDVGQVCVMIHSGSRG 118
VS RA RG Q+GTLG+GNHY E+Q+ + I+D+ A GI QV +M H GSRG
Sbjct: 185 VSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCGSRG 244
Query: 119 FGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSM 178
FGHQVAT + +F L MEK + I TNDR+LACA S+EGQDY +M
Sbjct: 245 FGHQVATDYLQ-------LF---LSVMEK---KYGIRTNDRELACAPFRSREGQDYFAAM 291
Query: 179 AAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTL 238
A N A+ NR + R+ F+ F P DL M ++YDV+HN AK E H+VDGK++ L
Sbjct: 292 KCAVNMAFANRQVILHRIREVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKREL 351
Query: 239 LVHRK-VSEPSHPGV 252
LVHRK + PG+
Sbjct: 352 LVHRKGATRAFGPGM 366
>UNIPROTKB|Q8TUS2 [details] [associations]
symbol:rtcB "tRNA-splicing ligase RtcB" species:190192
"Methanopyrus kandleri AV19" [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=TAS] [GO:0008452
"RNA ligase activity" evidence=TAS] InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 PRINTS:PR00379
PROSITE:PS50817 PROSITE:PS50818 PROSITE:PS50819 GO:GO:0046872
GO:GO:0003677 GO:GO:0090305 GO:GO:0004519 GO:GO:0006314
EMBL:AE009439 GenomeReviews:AE009439_GR GO:GO:0006388
InterPro:IPR003586 InterPro:IPR003587 SMART:SM00305 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01443 TIGRFAMs:TIGR01445 eggNOG:COG1372
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 PROSITE:PS01288 GO:GO:0008452 RefSeq:NP_614965.1
ProteinModelPortal:Q8TUS2 SMR:Q8TUS2 GeneID:1478277 KEGG:mka:MK1682
HOGENOM:HOG000296282 OMA:VHNCGVR Uniprot:Q8TUS2
Length = 988
Score = 491 (177.9 bits), Expect = 6.6e-46, P = 6.6e-46
Identities = 105/258 (40%), Positives = 159/258 (61%)
Query: 1 MFDHIPVGVGSKGI-IPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNA--- 56
+F ++P G+GS+ + ++ ++L + + G +W++ EG+ + ED +H E G M +A
Sbjct: 608 IFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGNMTHAYET 667
Query: 57 ------DPSK--VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQV 108
P S RA +RG PQLGTLG+GNH+ E+Q+VDEIYDK AA KMGI + GQV
Sbjct: 668 IGWEEYGPRDDVASKRAIERGRPQLGTLGSGNHFLEVQVVDEIYDKEAAEKMGIREEGQV 727
Query: 109 CVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINS 168
+M+H+GSRGFGHQV + + + M M +R + DRQLACA + +
Sbjct: 728 TIMVHTGSRGFGHQVCS---DHLRIMER-------SMRDVERRFGVRIPDRQLACAAMGT 777
Query: 169 KEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTT---PDDLDMHVIYDVSHNIAK 225
E + Y +M AAAN+A+ NR ++ R++F + F DD+ + VIYD++HN+AK
Sbjct: 778 DEAKRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDEYGDADDMGIEVIYDIAHNMAK 837
Query: 226 TEEHMVDGKQKTLLVHRK 243
E+H VDG+++ L+VHRK
Sbjct: 838 IEKHPVDGEERWLVVHRK 855
>UNIPROTKB|P71930 [details] [associations]
symbol:rtcB "RNA-splicing ligase RtcB" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] GO:GO:0005618
GO:GO:0005576 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0046872 GO:GO:0016874
eggNOG:COG1690 KO:K14415 OMA:GRMLNAD InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
PIR:C70963 RefSeq:NP_217147.2 RefSeq:NP_337208.1
RefSeq:YP_006516074.1 ProteinModelPortal:P71930 SMR:P71930
PRIDE:P71930 EnsemblBacteria:EBMYCT00000000852
EnsemblBacteria:EBMYCT00000072233 GeneID:13319353 GeneID:887431
GeneID:925603 KEGG:mtc:MT2707 KEGG:mtu:Rv2631 KEGG:mtv:RVBD_2631
PATRIC:18127692 TubercuList:Rv2631 HOGENOM:HOG000220065
ProtClustDB:CLSK881399 Uniprot:P71930
Length = 432
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 96/217 (44%), Positives = 134/217 (61%)
Query: 5 IPVGVGSKGIIPMNARD-LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
IP GVG+ G+ + R+ L+E L G +++ +G+ A D E CE+ G M AD +K+S
Sbjct: 85 IPRGVGTAGVWRLPDRNTLQEVLTGGARFAVEQGHGVALDLERCEDGGVMTGADAAKISD 144
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV 123
RA +RGL Q+G+LG+GNH+ E+Q VD +YD AA+ MG+ + G VCVMIH+GSRG GHQ+
Sbjct: 145 RALQRGLGQIGSLGSGNHFLEVQAVDRVYDPVAAAPMGLAE-GTVCVMIHTGSRGLGHQI 203
Query: 124 ATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAAN 183
T D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN
Sbjct: 204 CT--------------DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAAN 249
Query: 184 FAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS 220
+ NR +T R+ FA T P DL V ++++
Sbjct: 250 YGRANRQLLTEATRRVFADATGT-PLDLLYDVSHNLA 285
Score = 231 (86.4 bits), Expect = 8.7e-19, P = 8.7e-19
Identities = 53/111 (47%), Positives = 70/111 (63%)
Query: 140 DALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQA 199
D + QME+AM R I DRQLAC ++S +GQ YL +MAAAAN+ NR +T R+
Sbjct: 206 DHVRQMEQAMGRYGIAVPDRQLACVPVHSPDGQAYLAAMAAAANYGRANRQLLTEATRRV 265
Query: 200 FAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP 250
FA T P DL +YDVSHN+AK E H +DG+ +++ VHRK + S P
Sbjct: 266 FADATGT-PLDL----LYDVSHNLAKIETHPIDGQLRSVCVHRKGATRSLP 311
>UNIPROTKB|Q60CB4 [details] [associations]
symbol:MCA0195 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE017282 GenomeReviews:AE017282_GR KO:K14415 OMA:GRMLNAD
InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365
HOGENOM:HOG000220065 RefSeq:YP_112731.1 ProteinModelPortal:Q60CB4
SMR:Q60CB4 GeneID:3104824 KEGG:mca:MCA0195 PATRIC:22604123
Uniprot:Q60CB4
Length = 476
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 90/202 (44%), Positives = 120/202 (59%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
++ IPVG+GS G I ++A+ L+ L+ G W++ +G+ A D EE+GRM A P
Sbjct: 123 LYADIPVGLGSHGKIRLDAQGLDAMLKGGAQWAVEQGWGEARDLTRIEEHGRMEGARPEN 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+R ++GTLG+GNHY E+Q V EI+D +A GI + G V V IH GSRG G
Sbjct: 183 VSARAKERQRAEMGTLGSGNHYLEVQEVTEIFDAGSAQTFGISE-GDVVVSIHCGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+ T + L M+ A K+ I DR+LACA I S+ GQDYL +M A
Sbjct: 242 HQIGT--------------EYLRLMQGAAKQHGIALPDRELACAPIESEVGQDYLGAMRA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAK 202
A N A NR +T L RQ FA+
Sbjct: 288 AINCALANRQILTHLTRQVFAR 309
Score = 223 (83.6 bits), Expect = 9.0e-18, P = 9.0e-18
Identities = 51/110 (46%), Positives = 66/110 (60%)
Query: 145 MEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQF 204
M+ A K+ I DR+LACA I S+ GQDYL +M AA N A NR +T L RQ FA+
Sbjct: 252 MQGAAKQHGIALPDRELACAPIESEVGQDYLGAMRAAINCALANRQILTHLTRQVFARVL 311
Query: 205 NTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSE----PSHP 250
+ ++YDVSHN K EEH+V+GK++ L VHRK + P HP
Sbjct: 312 PAAR----LELLYDVSHNTCKFEEHLVEGKRRRLHVHRKGATRAYGPGHP 357
>UNIPROTKB|Q3AFN5 [details] [associations]
symbol:CHY_0177 "Putative uncharacterized protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG1690
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 HOGENOM:HOG000220065 OMA:MAIEEKG
RefSeq:YP_359049.1 ProteinModelPortal:Q3AFN5 STRING:Q3AFN5
GeneID:3727166 KEGG:chy:CHY_0177 PATRIC:21273535
BioCyc:CHYD246194:GJCN-178-MONOMER Uniprot:Q3AFN5
Length = 467
Score = 288 (106.4 bits), Expect = 5.1e-25, P = 5.1e-25
Identities = 77/218 (35%), Positives = 109/218 (50%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVG K L + L G L EGY +AED EE G + A+ +S
Sbjct: 123 YVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFAEDLNKIEEGGVLAGAEIKALSE 182
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A RG LGTLG GNH+ E+Q+V E+ +W A G+ G +C+M+H+GSRG GHQ
Sbjct: 183 TALSRGAEGLGTLGGGNHFIEVQVVAEVR-RWEVAQSFGLYP-GMLCLMVHTGSRGLGHQ 240
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
V C T + Y KA + N+ + LA +S EGQ Y ++M A+A
Sbjct: 241 V----CTDYTEILY----------KAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASA 286
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS 220
NFA+ NR +T RQ F DL + ++++
Sbjct: 287 NFAYANRQLITHYLRQVFKSYLGDGKLDLVYDLAHNIA 324
Score = 156 (60.0 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 41/108 (37%), Positives = 59/108 (54%)
Query: 147 KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNT 206
KA + N+ + LA +S EGQ Y ++M A+ANFA+ NR +T RQ F
Sbjct: 251 KAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQVFKSYLG- 309
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGVSR 254
D + ++YD++HNIAK E H DG + +LVHRK + + P R
Sbjct: 310 ---DGKLDLVYDLAHNIAKEEYH--DGIK--VLVHRKGATRALPAGHR 350
>TIGR_CMR|CHY_0177 [details] [associations]
symbol:CHY_0177 "conserved hypothetical protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG1690
KO:K14415 InterPro:IPR001233 PANTHER:PTHR11118 Pfam:PF01139
SUPFAM:SSF103365 HOGENOM:HOG000220065 OMA:MAIEEKG
RefSeq:YP_359049.1 ProteinModelPortal:Q3AFN5 STRING:Q3AFN5
GeneID:3727166 KEGG:chy:CHY_0177 PATRIC:21273535
BioCyc:CHYD246194:GJCN-178-MONOMER Uniprot:Q3AFN5
Length = 467
Score = 288 (106.4 bits), Expect = 5.1e-25, P = 5.1e-25
Identities = 77/218 (35%), Positives = 109/218 (50%)
Query: 4 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
++P GVG K L + L G L EGY +AED EE G + A+ +S
Sbjct: 123 YVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFAEDLNKIEEGGVLAGAEIKALSE 182
Query: 64 RAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKW-AASKMGIEDVGQVCVMIHSGSRGFGHQ 122
A RG LGTLG GNH+ E+Q+V E+ +W A G+ G +C+M+H+GSRG GHQ
Sbjct: 183 TALSRGAEGLGTLGGGNHFIEVQVVAEVR-RWEVAQSFGLYP-GMLCLMVHTGSRGLGHQ 240
Query: 123 VATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAA 182
V C T + Y KA + N+ + LA +S EGQ Y ++M A+A
Sbjct: 241 V----CTDYTEILY----------KAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASA 286
Query: 183 NFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVS 220
NFA+ NR +T RQ F DL + ++++
Sbjct: 287 NFAYANRQLITHYLRQVFKSYLGDGKLDLVYDLAHNIA 324
Score = 156 (60.0 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 41/108 (37%), Positives = 59/108 (54%)
Query: 147 KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNT 206
KA + N+ + LA +S EGQ Y ++M A+ANFA+ NR +T RQ F
Sbjct: 251 KAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQVFKSYLG- 309
Query: 207 TPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGVSR 254
D + ++YD++HNIAK E H DG + +LVHRK + + P R
Sbjct: 310 ---DGKLDLVYDLAHNIAKEEYH--DGIK--VLVHRKGATRALPAGHR 350
>UNIPROTKB|P46850 [details] [associations]
symbol:rtcB "RNA ligase" species:83333 "Escherichia coli
K-12" [GO:0006396 "RNA processing" evidence=IDA] [GO:0042245 "RNA
repair" evidence=EXP;TAS] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0008452 "RNA ligase activity" evidence=IDA]
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0006396 GO:GO:0030145
GO:GO:0042245 eggNOG:COG1690 KO:K14415 InterPro:IPR001233
PANTHER:PTHR11118 Pfam:PF01139 SUPFAM:SSF103365 PROSITE:PS01288
PIR:H65137 RefSeq:NP_417879.1 RefSeq:YP_492012.1
ProteinModelPortal:P46850 SMR:P46850 IntAct:P46850
SWISS-2DPAGE:P46850 EnsemblBacteria:EBESCT00000000985
EnsemblBacteria:EBESCT00000017447 GeneID:12932194 GeneID:947929
KEGG:ecj:Y75_p3756 KEGG:eco:b3421 PATRIC:32122278 EchoBASE:EB2774
EcoGene:EG12939 HOGENOM:HOG000220066 OMA:FKHLAVM
ProtClustDB:CLSK880652 BioCyc:EcoCyc:G7751-MONOMER
BioCyc:ECOL316407:JW3384-MONOMER BioCyc:MetaCyc:G7751-MONOMER
Genevestigator:P46850 GO:GO:0008452 Uniprot:P46850
Length = 408
Score = 130 (50.8 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 60/183 (32%), Positives = 86/183 (46%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGTLG GNH+ EI +DE D QV +M+HSGSRG G+ + T
Sbjct: 160 LGTLGTGNHFIEI-CLDE------------SD--QVWIMLHSGSRGIGNAIGT------- 197
Query: 133 CMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
Y F D L Q E ++ +ET R LA ++ DYLK++A A FA +NR +
Sbjct: 198 ---Y-FID-LAQKEM---QETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQLFASLNRDA 249
Query: 192 M---TFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPS 248
M Q+ ++ P L M I + HN + E+H G++ + V RK + +
Sbjct: 250 MMENVVTALQSITQKTVRQPQTLAMEEI-NCHHNYVQKEQHF--GEE--IYVTRKGAVSA 304
Query: 249 HPG 251
G
Sbjct: 305 RAG 307
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 257 257 0.00086 114 3 11 22 0.46 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 608 (65 KB)
Total size of DFA: 221 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.47u 0.14s 22.61t Elapsed: 00:00:01
Total cpu time: 22.48u 0.14s 22.62t Elapsed: 00:00:01
Start: Thu Aug 15 14:00:01 2013 End: Thu Aug 15 14:00:02 2013