RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10094
(257 letters)
>gnl|CDD|216324 pfam01139, UPF0027, Uncharacterized protein family UPF0027.
Length = 419
Score = 279 bits (716), Expect = 6e-93
Identities = 119/251 (47%), Positives = 157/251 (62%), Gaps = 32/251 (12%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F +P GVGS G I ++ +L+E LE G +W++ EGY W E ADP K
Sbjct: 94 IFRAVPSGVGSGGKIRLSKSELDEVLEEGAEWAVEEGYGWDEG------------ADPEK 141
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS +AK+RGLPQLGTLG GNH+ EIQ+VDEI+D+ AA G+++ GQV +MIHSGSRG G
Sbjct: 142 VSEKAKERGLPQLGTLGGGNHFIEIQVVDEIFDEEAAKAFGLDEKGQVWLMIHSGSRGLG 201
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D L KAMK+ I+ DRQLA ++S+EGQDYL +MAA
Sbjct: 202 HQIAT--------------DYLRLARKAMKKYGIKLPDRQLAYLPLDSEEGQDYLAAMAA 247
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+AW NR + R+AF + F DL++ ++YDV+HN AK EEH K + L V
Sbjct: 248 AANYAWANRQLIAHRVREAFEEVFGGP--DLELRLVYDVAHNYAKKEEH----KGRELWV 301
Query: 241 HRKVSEPSHPG 251
HRK + + G
Sbjct: 302 HRKGATRAFVG 312
>gnl|CDD|224604 COG1690, RtcB, Uncharacterized conserved protein [Function
unknown].
Length = 432
Score = 254 bits (651), Expect = 4e-83
Identities = 105/251 (41%), Positives = 147/251 (58%), Gaps = 29/251 (11%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+ IP GVG+ G++P L+E L G W++ +G A D E CE+ G M AD +K
Sbjct: 104 LDRAIPRGVGTAGVLPDR-NTLQEVLTGGARWAVEQGLGVALDLERCEDGGVMTGADAAK 162
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
+S RA +RGL QLG+LG+GNH+ E+Q VD +YD+ AA+ MG+ G V VMIH+GSRG G
Sbjct: 163 ISDRALQRGLGQLGSLGSGNHFLEVQAVDRVYDEEAAAPMGL-AEGTVWVMIHTGSRGLG 221
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQ+AT D + E+AM R I DRQLAC ++S++GQ YL +MAA
Sbjct: 222 HQIAT--------------DFVRLAEQAMGRYGIAVPDRQLACVPVDSEDGQAYLAAMAA 267
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
AAN+A NR +T R+A + + ++YDV HN+AK E H + ++V
Sbjct: 268 AANYARANRQLITERVRRALQEVTD---------LLYDVHHNLAKKETHNG----EEVIV 314
Query: 241 HRKVSEPSHPG 251
HRK + + G
Sbjct: 315 HRKGATRAFVG 325
>gnl|CDD|181972 PRK09588, PRK09588, hypothetical protein; Reviewed.
Length = 376
Score = 78.5 bits (194), Expect = 9e-17
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 44/180 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q VDEIYD + +G+ D Q+ +++HSGSRG G
Sbjct: 129 LGTIGGGNHFAELQQVDEIYDAELFALLGL-DADQLLLLVHSGSRGLGQ----------- 176
Query: 133 CMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
A+ R ++ + L S + YL A FA NR
Sbjct: 177 ---------------AILRRHVASFGHNGLP---EGSDDALAYLAEHDDALAFARANRQ- 217
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L + +Q + + DV+HN E V G+ L HRK + PS G
Sbjct: 218 ---LIARRILQQLRAEGE-----PVLDVAHNF--VEPCQVGGEDGWL--HRKGATPSDQG 265
>gnl|CDD|213769 TIGR03073, release_rtcB, release factor H-coupled RctB family
protein. Members of this family are related to RctB.
RctB a protein of known structure but unknown function
that often is encoded near RNA cyclase and therefore is
suggested to be a tRNA or mRNA processing enzyme. This
family of RctB-like proteins in encoded upstream of, and
apparently is translationally coupled to, the putative
peptide chain release factor RF-H (TIGR03072), product
of the prfH gene. Note that a large deletion at the
junction between this gene and the prfH gene in
Escherichia coli K-12 marks both as probable pseudogenes
[Protein synthesis, Other].
Length = 356
Score = 63.2 bits (154), Expect = 1e-11
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 44/181 (24%)
Query: 73 LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
LGT+G GNH+AE+Q VD+IYD A + +G+ D Q+ +++HSGSRG G
Sbjct: 118 LGTIGGGNHFAELQQVDQIYDADALATLGL-DAKQLLLLVHSGSRGLG------------ 164
Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQ-LACARINSKEGQDYLKSMAAAANFAWVNRSS 191
+A+ R +++ L S YL A FA NR
Sbjct: 165 --------------QAILRRHVDYFGHNGLP---EGSPAAAAYLAQHDDALRFAKANRQ- 206
Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
L + ++ D L DV+HN+ ++G+ L HRK + P+ G
Sbjct: 207 ---LIARRILQRLRAKGDPL-----LDVNHNL--VSPATIEGEDGWL--HRKGATPADQG 254
Query: 252 V 252
Sbjct: 255 P 255
>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 30.1 bits (68), Expect = 0.93
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 137 VFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
V+ D Q+E+ M RD + + RIN++ D+ +S A
Sbjct: 132 VWVDPETQLERLMARDGLSEEQAR---NRINAQMPLDWKRSKA 171
>gnl|CDD|224348 COG1431, COG1431, Argonaute homolog, implicated in RNA metabolism
[Translation, ribosomal structure and biogenesis].
Length = 685
Score = 28.3 bits (63), Expect = 4.7
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 14 IIPMNARDLEEALEMGMDWS-----LREGYIWAEDKEHCEEYGRMLNADPSKVSMR 64
+ + R LE+ G + LR+G + A + +EYG L ++P +
Sbjct: 519 RLETSGRYLEKMNWRGFESRNLIVTLRDGKLVAGEIAAVKEYGGELGSNPEVNRIL 574
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 28.0 bits (62), Expect = 5.6
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPD 209
LA + LK ++ AA V ++ A F T
Sbjct: 387 LAMLTDLLQGKGGDLKKVSDAAGAGAVETLGLSADAAANLATTFGTLGA 435
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 27.6 bits (61), Expect = 6.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 123 VATGKCEKITCMAYVF--PDAL 142
V+TG C I CM+Y F PD L
Sbjct: 51 VSTGDCPFIVCMSYAFHTPDKL 72
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 251
Score = 27.5 bits (62), Expect = 6.6
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
Query: 65 AKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIE 103
AKKR LP++ AG H A + V +I AAS++G++
Sbjct: 37 AKKRMLPRI----AG-HKAGMDTVKKITK--AASELGVK 68
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 27.6 bits (62), Expect = 7.2
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 22 LEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRA 65
L+ LE+ GY ++ + G + + K+S RA
Sbjct: 352 LKAVLEL-------LGYGPDKEVLLHQGVGLVRGGEGVKMSTRA 388
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 27.0 bits (61), Expect = 9.0
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 143 VQMEKAMKRDNIETNDRQLACARINS 168
Q+E+ M RD + + A A I S
Sbjct: 137 TQLERLMARDGL---SEEEAEAIIAS 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.399
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,085,246
Number of extensions: 1204144
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 23
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)