RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10094
(257 letters)
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown
function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP:
d.261.1.1
Length = 481
Score = 242 bits (619), Expect = 5e-78
Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 16/252 (6%)
Query: 1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
+F ++P GVGS+G I ++ +++ L G W++ GY W D E EE GRM ADP
Sbjct: 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 182
Query: 61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D A G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
HQVA+ D L ME+A+++ I DR+L S+EGQ Y +M A
Sbjct: 242 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AANFAW NR +T R++F + F P+ DL M ++YDV+HNI K EEH VDGK+ ++
Sbjct: 288 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347
Query: 240 VHRKVSEPSHPG 251
VHRK + + P
Sbjct: 348 VHRKGATRAFPP 359
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural
genomics, NPPSFA, national proje protein structural and
functional analyses; 2.10A {Thermus thermophilus}
Length = 487
Score = 242 bits (618), Expect = 8e-78
Identities = 110/252 (43%), Positives = 151/252 (59%), Gaps = 21/252 (8%)
Query: 1 MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
++ +P GVGS + + + R+L+E L+ G W ++ GY + ED E GR+ A+P
Sbjct: 134 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 193
Query: 60 KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
KVS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA G+ GQV V+IH+GSRG
Sbjct: 194 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 252
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
GHQV D + + K R IE D+QLA A I S EGQDYL++MA
Sbjct: 253 GHQVCQ--------------DYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 298
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
AAANFA+ NR + R+AF K TP D + V+YD++HN AK EEH + + +L
Sbjct: 299 AAANFAFANRQLIAHFVREAFEKVG-FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 353
Query: 240 VHRKVSEPSHPG 251
VHRK + +
Sbjct: 354 VHRKGATRAFGP 365
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 96/245 (39%)
Query: 28 MGMDWSLREGY-----IWAE-DKEHCEEYG----RMLNADPSKVSMR---AKKRGLPQLG 74
MGMD L + +W D + YG ++ +P +++ K + + +
Sbjct: 1631 MGMD--LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE-- 1686
Query: 75 TLGAGNHYAEIQIVDEIYDKWAASKMGIEDVG---------------------QVCVMIH 113
+Y+ + I + I D ++ +++ Q + +
Sbjct: 1687 ------NYSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 114 S-------GSRGF--------GHQV----ATGKCEKITCMAYVFP--DA--LVQ-----M 145
S+G GH + A + +A V +V M
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAA------LASLADVMSIESLVEVVFYRGMTM 1793
Query: 146 EKAMKRDNI-ETNDRQLAC--ARINSKEGQDYLKSMAA-----------AANFAWVNRSS 191
+ A+ RD + +N +A R+ + Q+ L+ + N+ N +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---NVEN 1850
Query: 192 MTFLC 196
++
Sbjct: 1851 QQYVA 1855
Score = 32.7 bits (74), Expect = 0.12
Identities = 39/310 (12%), Positives = 85/310 (27%), Gaps = 122/310 (39%)
Query: 1 MFDHIPVGVG-SKGIIPMNA-------RDLEEALEMGMDWSLREGY----------IWAE 42
+ ++ G S+G++ A ++ + G +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 43 DKEHCEEYGR-----MLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQ-IVDEIYDKWA 96
E E ML+ + L Q ++Q V++
Sbjct: 323 ILEDSLENNEGVPSPMLS-----I------SNLTQ----------EQVQDYVNKTNSHLP 361
Query: 97 ASKMGIEDVGQVCVMIHSGSRGFGHQVATG----------KCEKITCMA----------- 135
A K QV + + +G++ V +G K +
Sbjct: 362 AGK-------QVEISLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 136 ------YVF-----P-------DALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKS 177
F P A + K + ++N+ N + + ++ +G D L+
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRV 470
Query: 178 MAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD---GK 234
++ + ++ + + V ++ + T H++D G
Sbjct: 471 LSGS-----ISER----IVDCIIR-----------LPVKWETTTQFKAT--HILDFGPGG 508
Query: 235 QKTL--LVHR 242
L L HR
Sbjct: 509 ASGLGVLTHR 518
Score = 32.3 bits (73), Expect = 0.19
Identities = 25/179 (13%), Positives = 44/179 (24%), Gaps = 83/179 (46%)
Query: 11 SKGIIPMNAR-------------------DLEEALEMGMDWSLRE-GYIWAE----DKEH 46
SKG+IP +A +E +E+ + G D+
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-----VFYRGMTMQVAVPRDELG 1803
Query: 47 CEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVG 106
YG M+ +P +V A+ E +
Sbjct: 1804 RSNYG-MIAINPGRV-----------------------------------AASFSQEALQ 1827
Query: 107 QVCVMIHSGSRGF---------GHQ-VATGKCEKITCMAYVFPDALVQMEKAMKRDNIE 155
V + + Q VA G + D + + +K I+
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--------DTVTNVLNFIKLQKID 1878
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.007
Identities = 42/309 (13%), Positives = 84/309 (27%), Gaps = 84/309 (27%)
Query: 4 HIPVGVGSKGIIPMNARDL-EEALEMGMDWSLRE----------GYIWAEDKEHCE--EY 50
HI + S + P + L + L+ L I ++ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 51 GRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQI----VD------EIYDKWAASKM 100
+ +N D K++ + L L + + + + W
Sbjct: 347 WKHVNCD--KLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIK 401
Query: 101 GIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDN-IETNDR 159
DV V +H S V E P + +E +K +N +
Sbjct: 402 --SDVMVVVNKLHKYS-----LVEKQPKE----STISIPS--IYLELKVKLENEYALHRS 448
Query: 160 QLACARIN--------SKEGQD-Y--------LKSMAAAA----------NFAWVNR--- 189
+ I D Y LK++ +F ++ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 190 ----------SSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
S + L + F K + D ++ + + K EE+++ K T L
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDL 567
Query: 240 VHRKVSEPS 248
+ +
Sbjct: 568 LRIALMAED 576
Score = 36.0 bits (82), Expect = 0.013
Identities = 27/263 (10%), Positives = 63/263 (23%), Gaps = 80/263 (30%)
Query: 43 DKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGI 102
D N S++A+ R L L + + + ++ + + A + +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 103 E-------------DVGQVCVMIH----SGSRGFGHQVATGKCEKITCMAY--------- 136
D H S K
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 137 VFPDALVQMEKAMKRDNIETND--RQLACARINS-----------KEGQDYLKSMAAAAN 183
P L + RD + T D + + C ++ + E + ++
Sbjct: 325 TNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--- 380
Query: 184 FA-------------WVNRSS------MTFLCRQAFAKQFNTTPDDLDMHV-IYDVSHNI 223
F W + + L + + ++ + + I + +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISIPSIYLEL 435
Query: 224 AKTEEHMVDGKQKTLLVHRKVSE 246
E+ +HR + +
Sbjct: 436 KVKLENEYA-------LHRSIVD 451
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 27.6 bits (61), Expect = 4.9
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 110 VMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETN 157
V++HSG GH V K F D +V + K + IE N
Sbjct: 415 VLVHSGDNHGGHYVVYLN-PKGDGKWCKFDDDVVS--RCTKEEAIEHN 459
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 26.7 bits (60), Expect = 5.9
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 143 VQMEKAMKRDNIETNDRQLACARINS 168
Q+ ++ +RDN + + +NS
Sbjct: 136 TQLARSAQRDNN---NFEQIQRIMNS 158
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 143 VQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQ 198
Q+++ M+RD++ R+ + + Q ++ A A+ N + +
Sbjct: 138 TQLKRTMQRDDV---TREHVEQILAA---QATREARLAVADDVIDNNGAPDAIASD 187
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus
solfataricus}
Length = 364
Score = 26.6 bits (58), Expect = 9.0
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 20 RDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSM 63
L E L+ + + Y A + E+ +L P V+
Sbjct: 245 AGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTY 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.399
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,095,646
Number of extensions: 243320
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 15
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)