RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10094
         (257 letters)



>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 480

 Score =  243 bits (622), Expect = 6e-79
 Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 16/252 (6%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +F ++P GVGS+G I ++   +++ L  G  W++  GY W  D E  EE GRM  ADP  
Sbjct: 122 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 181

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG G
Sbjct: 182 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 240

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVA+              D L  ME+A+++  I   DR+L      S+EGQ Y  +M A
Sbjct: 241 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 286

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AANFAW NR  +T   R++F + F   P+ DL M ++YDV+HNI K EEH VDGK+  ++
Sbjct: 287 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 346

Query: 240 VHRKVSEPSHPG 251
           VHRK +  + P 
Sbjct: 347 VHRKGATRAFPP 358


>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5
           {Bacteriophage HK97 [TaxId: 37554]}
          Length = 280

 Score = 27.1 bits (59), Expect = 2.4
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 21/120 (17%)

Query: 135 AYVFPDALVQM-EKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWV------ 187
           + + P  +  +    ++R  I    R L      S    +Y++      N   V      
Sbjct: 11  SLIQPMQIPGIIMPGLRRLTI----RDLLAQGRTSSNALEYVREEVFTNNADVVAEKALK 66

Query: 188 NRSSMTFLCRQAFAK----------QFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKT 237
             S +TF  + A  K          Q       L  ++   + + +A  EE  +     T
Sbjct: 67  PESDITFSKQTANVKTIAHWVQASRQVMDDAPMLQSYINNRLMYGLALKEEGQLLNGDGT 126


>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 91

 Score = 25.7 bits (56), Expect = 2.4
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 103 EDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNI-ETNDRQL 161
            ++ +V +   SG   FG  VA G  EK   +  + P     +      D + + N  + 
Sbjct: 5   VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRT 64


>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 205

 Score = 25.9 bits (56), Expect = 4.7
 Identities = 15/139 (10%), Positives = 39/139 (28%), Gaps = 14/139 (10%)

Query: 14  IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKV--SMRAKKRGLP 71
           +  ++ +          D       +    + +  +YG       + V   +  + +   
Sbjct: 43  LTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAASVFKELCYENKDNL 102

Query: 72  QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKI 131
             G + AG            YD     ++    +G     +     G G     G C+K 
Sbjct: 103 TAGIIVAG------------YDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN 150

Query: 132 TCMAYVFPDALVQMEKAMK 150
                   + +  ++ ++ 
Sbjct: 151 FRENMSKEETVDFIKHSLS 169


>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 22.8 bits (49), Expect = 7.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 37 GYIWAEDKEHCEEYGRM 53
          G+ + ED+ +CE++ R 
Sbjct: 13 GHFFVEDQIYCEKHARE 29


>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
           (SLT70), superhelical domain {Escherichia coli [TaxId:
           562]}
          Length = 450

 Score = 25.6 bits (55), Expect = 7.8
 Identities = 8/60 (13%), Positives = 17/60 (28%)

Query: 155 ETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMH 214
           +    +  C    +K      +     A   W+   S    C + F+    +   D   +
Sbjct: 98  KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY 157


>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
          mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 66 KKRGLPQLGTLGAGNHYAEIQIV 88
          + +G+P     G GN   +  I 
Sbjct: 55 EGKGMPIPKYGGYGNLIIKFTIK 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,714
Number of extensions: 44712
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 17
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)