BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10095
(680 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0BLT0|ZN593_XENTR Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1
Length = 128
Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
Query: 5 QTKKKKNCTNKRSIKTKLYKRDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCAR 64
++ KKKN + + KTK +DLDQI D K ENA+ LL+QEID+ PG AQ YCLHC+R
Sbjct: 11 KSDKKKNIS--KLWKTKRRVKDLDQIHHDMKPENAKLLLNQEIDYQLPGNAQHYCLHCSR 68
Query: 65 HFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQ 118
+F+D LKEHF+TKVHKRRLK L EPYT EE+ERAAG GSY PK+ +QTQ
Sbjct: 69 YFVDLKTLKEHFKTKVHKRRLKQLREEPYTQEEAERAAGMGSYIPPKLINVQTQ 122
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 637 PYTVEESERAAGYGSYQTPKIRKLQTQ 663
PYT EE+ERAAG GSY PK+ +QTQ
Sbjct: 96 PYTQEEAERAAGMGSYIPPKLINVQTQ 122
>sp|Q9W3Y0|ZN593_DROME Zinc finger protein 593 homolog OS=Drosophila melanogaster
GN=CG3224 PE=2 SV=1
Length = 162
Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 67/77 (87%)
Query: 42 LLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERA 101
L++Q +D DKPG AQFYC+HCA++FID+ A++ HFRTKVHKRRLKALE+EPY++EE+ERA
Sbjct: 44 LINQNVDLDKPGFAQFYCVHCAKYFIDDTAMQAHFRTKVHKRRLKALEIEPYSIEEAERA 103
Query: 102 AGYGSYQTPKIRKLQTQ 118
AG GS+ PK R ++TQ
Sbjct: 104 AGRGSFVKPKKRAMETQ 120
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 637 PYTVEESERAAGYGSYQTPKIRKLQTQ 663
PY++EE+ERAAG GS+ PK R ++TQ
Sbjct: 94 PYSIEEAERAAGRGSFVKPKKRAMETQ 120
>sp|Q9U239|ZN593_CAEEL Zinc finger protein 593 homolog OS=Caenorhabditis elegans
GN=Y56A3A.18 PE=3 SV=1
Length = 128
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 15 KRSIKTKLYKR---DLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHA 71
K +I K KR DLDQI D K E A KLL QEID+D PG QFYC+ C RHF+DE
Sbjct: 8 KHTISNKTRKRPGKDLDQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIECERHFVDEKT 67
Query: 72 LKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQSLDKTAEI 126
+ H +TK+HK R+K L+ PYT E+ A G G + P I L K EI
Sbjct: 68 RQLHRKTKLHKNRVKTLKEVPYTQAEANAAGGSGFF--PAITLKTRVELPKQPEI 120
>sp|O00488|ZN593_HUMAN Zinc finger protein 593 OS=Homo sapiens GN=ZNF593 PE=1 SV=2
Length = 134
Score = 90.5 bits (223), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 16 RSIKTKLYKRDLDQIDGDCKEENAEKLL---HQEIDFDKPGEAQFYCLHCARHFIDEHAL 72
R +K K + DLD+I + + + + + + E D D PG CL CAR+FID L
Sbjct: 17 RQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNL 76
Query: 73 KEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQSLDKTAEI 126
K HFR+K HK+RLK L VEPY+ EE+ERAAG GSY P+ + T+ + E+
Sbjct: 77 KTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVPTEVSTEVPEM 130
>sp|Q9DB42|ZN593_MOUSE Zinc finger protein 593 OS=Mus musculus GN=Znf593 PE=2 SV=2
Length = 134
Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 16 RSIKTKLYKRDLDQIDGDCKEENAEKLLHQ---EIDFDKPGEAQFYCLHCARHFIDEHAL 72
R +K K + DLD+I + + + + + E D D PG CL CAR+FID L
Sbjct: 17 RQMKAKKRRPDLDEIHRELRPQGLPRPKPEPDAEPDPDLPGGGLHRCLACARYFIDSANL 76
Query: 73 KEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPK 111
K HFR+K HK+RLK L VEPY+ EE+ERAAG GSY P+
Sbjct: 77 KTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVQPQ 115
>sp|Q08004|BUD20_YEAST Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD20 PE=1 SV=1
Length = 166
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 19 KTKLYKRDLDQIDGD-CKEENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFR 77
KTK RDLD I D +E+ +KLL+Q +D KPG Q YC+HCA++ ALK H +
Sbjct: 10 KTKRRTRDLDLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYMETAIALKTHLK 69
Query: 78 TKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQSLDKTAEIQPVREYCSALF 137
KVHKRR+K L PYT E S+ AAGY + K + + T + P +E AL
Sbjct: 70 GKVHKRRVKELRGVPYTQEVSDAAAGYN------LNKFLNRVQEITQSVGPEKESNEALL 123
>sp|Q9P370|BUD20_SCHPO Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bud20 PE=3 SV=1
Length = 124
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 3 GPQTKKKKNCTNKRS--IKTKLYKRDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCL 60
G +K+K+ +N +T++Y RDLDQI D E +EK ID D PG Q YC+
Sbjct: 2 GRVARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTE--SEKFDKLPIDPDLPGLGQHYCI 59
Query: 61 HCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQS 119
CAR+F AL H + KVHKRRLK L EPYT EE+E A G + KL S
Sbjct: 60 ECARYFDSSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKLADNS 118
>sp|Q553S1|ZN593_DICDI Zinc finger protein 593 homolog OS=Dictyostelium discoideum
GN=DDB_G0275351 PE=3 SV=1
Length = 141
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 3 GPQTKKKKNCTNKRSIKTKLYKRDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHC 62
G TKKK+ KR+ TK +D+DQI + + E +K E+D D PG Q YC+HC
Sbjct: 9 GTHTKKKQY---KRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQNYCIHC 65
Query: 63 ARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESE 99
++HF+ L+ H + K HK R+K L+ +PY++ ES+
Sbjct: 66 SKHFVTNEDLQSHIKGKPHKIRVKELKTKPYSLAESQ 102
>sp|Q8SWF6|Z231_ENCCU Zinc finger C2H2 protein ECU02_0310 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU02_0310 PE=3 SV=1
Length = 104
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 1 MTGPQTKKKKNCTNKRSIKTKLYK----RDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQ 56
M TK+KK +NK ++ K + +D+DQ+ D E+ +K+ E D + PG
Sbjct: 1 MPKSDTKQKKRRSNKNRLRIKRARLFGPKDIDQVKEDI--ESQKKI---EYDPELPGGGH 55
Query: 57 FYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAG 103
FYC C RHFI E L EH R+ H+RR K + ++ ++E A G
Sbjct: 56 FYCCECDRHFITEKVLMEHKRSNPHRRRAKEVREVAHSQRDAEWAVG 102
>sp|Q9NP81|SYSM_HUMAN Serine--tRNA ligase, mitochondrial OS=Homo sapiens GN=SARS2 PE=1
SV=1
Length = 518
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/409 (19%), Positives = 157/409 (38%), Gaps = 61/409 (14%)
Query: 152 PSYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHK---LVD 208
P D++ + + L+ R+ ++ D + ++E +++ LE + + +
Sbjct: 56 PQLDIERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTE 115
Query: 209 LEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNV------IIKVLKLPN 262
+ LL N+ E Q + KY + EI+K + Y R ++ LKLPN
Sbjct: 116 AVRALLANQDSGEVQQ-DPKYQGLRARGREIRK--ELVHLYPREAQLEEQFYLQALKLPN 172
Query: 263 YLDNSTPEVYET------------IYEYDPDR--EGKNKIDMDALSKYVQYTNRLDIHYL 308
P E+ ++ + P E K+D+ + + +
Sbjct: 173 QTHPDVPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLR 232
Query: 309 GNAAKFEY-LIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNEN 367
G A ++ L+ ++ F P T DL +G + EG G ++P+ N + N
Sbjct: 233 GAGALLQHGLVNFTFNKL--LRRGFTPMTVPDLLRGAVFEGCG---MTPNANPSQIYN-- 285
Query: 368 DLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLK 427
+ +++ +L G+A + + Y +H+V +DLPV+ V S Y +
Sbjct: 286 -IDPARFKDL--NLAGTAEVGL-AGYFMDHTVAFRDLPVRMVCSSTCY---------RAE 332
Query: 428 TSKHSRVENLYNSIQREKVNLF----VGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRIC 483
T+ LY KV +F G L +EF ++Q ++ +L + +R+
Sbjct: 333 TNTGQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQ---MEILTELGLHFRVL 389
Query: 484 KAPADVLHTSESHRLEYQVYSYS------LNSWVTCMDLNAKVYIQIVF 526
P L + + + + + S C D ++ + I+F
Sbjct: 390 DMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSR-RLHIMF 437
>sp|Q9JJL8|SYSM_MOUSE Serine--tRNA ligase, mitochondrial OS=Mus musculus GN=Sars2 PE=2
SV=2
Length = 518
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 32/206 (15%)
Query: 328 VKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHM 387
V F P T DL +G + EG G ++P+ N + N + +E+ +L G+A +
Sbjct: 251 VSRGFTPMTVPDLLRGAVFEGCG---MTPNANPSQIYN---IDPSRFEDL--NLAGTAEV 302
Query: 388 SMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVN 447
+ Y +HSV +DLPV+ V + Y +T LY KV
Sbjct: 303 GL-AGYFMDHSVAFRDLPVRMVCASTCY---------RAETDTGKEPWGLYRVHHFTKVE 352
Query: 448 LF----VGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVY 503
+F G L EF ++Q ++ +L + +R+ P L + + + +
Sbjct: 353 MFGVTGPGLEQSSQLLDEFLSLQV---EILTELGLHFRVLDMPTQELGLPAYRKFDIEAW 409
Query: 504 SYS------LNSWVTCMDLNA-KVYI 522
+ S C D + ++YI
Sbjct: 410 MPGRGRYGEVTSASNCTDFQSRRLYI 435
>sp|Q9N0F3|SYSM_BOVIN Serine--tRNA ligase, mitochondrial OS=Bos taurus GN=SARS2 PE=1 SV=1
Length = 518
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 32/209 (15%)
Query: 328 VKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHM 387
+ F P T DL +GV+ EG G ++P+ + N + +E+ +L G+A +
Sbjct: 251 IHRGFTPMTVPDLLRGVVFEGCG---MTPNAKPSQIYN---IDPSRFEDL--NLAGTAEV 302
Query: 388 SMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVN 447
+ Y +HSV +DLP++ V S Y +T LY KV
Sbjct: 303 GL-AGYFMDHSVAFRDLPIRMVCSSTCY---------RAETDTGKEPWGLYRVHHFTKVE 352
Query: 448 LF----VGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVY 503
+F G L +EF ++Q ++ +L + +R+ P L + + + +
Sbjct: 353 MFGVTGPGLEQSSELLEEFLSLQ---MEILTELGLHFRVLDMPTQELGLPAYRKFDIEAW 409
Query: 504 SYS------LNSWVTCMDLNAKVYIQIVF 526
+ S C D ++ + I+F
Sbjct: 410 MPGRGRFGEVTSASNCTDFQSR-RLHIMF 437
>sp|B8E0R9|SYS_DICTD Serine--tRNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM
6724) GN=serS PE=3 SV=1
Length = 425
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/386 (19%), Positives = 157/386 (40%), Gaps = 47/386 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D+K + EN +++ + R +D ++D + E + ++K L + + Q +
Sbjct: 3 DIKILRENPEIMKENIILRNLDPQKYDVDYIIELDAKRRSLQKELDNLRAQRNKISQEI- 61
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYET 274
K + + EK E K LK +I++ + ++ + ++ +LPN+L P +
Sbjct: 62 ---GKHQGEEREKLIKEAKILKEKIEELAKEYDNVEKELFSRLWQLPNFLSPKAPRGKDE 118
Query: 275 IYEYDPDREG---------KNKIDMDALSKYVQY-----TNRLDIHYLGN-AAKFEYLIP 319
+ + G K+ +D+ L+ V + + +YL N A E+ +
Sbjct: 119 KDNVEIKKWGEIKTFNFTPKDHLDLALLNDLVDFERGSKVTGSNFYYLKNEAVLLEFALF 178
Query: 320 IILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRN 379
++ D + F F DL + I++G G P + V + +++G
Sbjct: 179 RLVIDTL-LPEGFKLFITPDLARMEIIDGIGFQPRGPEAQIYRVED----TDLG------ 227
Query: 380 HLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN 439
L+ +A +++ YH + ++ DLP+KY+ GF + +++R LY
Sbjct: 228 -LIATAEITL-GGYHKDEILDELDLPLKYL------GFSHCFRTEAGAYGRYNR--GLYR 277
Query: 440 SIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLE 499
Q K +F+ E+ + + I L + + KL + YR+ + L + + +
Sbjct: 278 VHQFSKAEIFI-ICRPEDSEEMHEYILGLEEKIFQKLEIPYRVLDICSGDLGAPAARKFD 336
Query: 500 YQVYSYS------LNSWVTCMDLNAK 519
+ + + S C D A+
Sbjct: 337 IEAWMPGRGEFGEVTSCSNCTDYQAR 362
>sp|B5YEY8|SYS_DICT6 Serine--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947
/ DSM 3960 / H-6-12) GN=serS PE=3 SV=1
Length = 425
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 116/286 (40%), Gaps = 43/286 (15%)
Query: 255 IKVLKLPNYLDNSTPEVYETIYEYDPDREG---------KNKIDMDALSKYVQY-----T 300
+K+ +LPN+L P+ + + R G K+ +D+ L+ V +
Sbjct: 99 LKLWQLPNFLSPKAPKGKDEKDNIEIKRWGNIKTFTFTPKDHLDLALLNDLVDFERGSKV 158
Query: 301 NRLDIHYLGN-AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDN 359
+ +YL N A E+ + ++ D + F F DL + I++G G P
Sbjct: 159 TGSNFYYLKNEAVLLEFALFRLVIDTL-LPEGFKLFITPDLARMEIIDGIGFQPRGPEAQ 217
Query: 360 MVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHN 419
+ V + +++G L+ +A +++ YH + ++ DLP+KY+ GF +
Sbjct: 218 IYRVED----TDLG-------LIATAEITL-GGYHKDEILDELDLPLKYL------GFSH 259
Query: 420 LLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK 479
+++R LY Q K +F+ E+ + + I SL + + KL +
Sbjct: 260 CFRTEAGAYGRYNR--GLYRVHQFSKAEIFI-ICRPEDSEEMHEYILSLEEKIFQKLEIP 316
Query: 480 YRICKAPADVLHTSESHRLEYQVYSYS------LNSWVTCMDLNAK 519
YR+ + L + + + + + + S C D A+
Sbjct: 317 YRVVDICSGDLGAPAARKFDIEAWMPGRGDFGEVTSCSNCTDYQAR 362
>sp|Q83HA1|SYS_TROW8 Serine--tRNA ligase OS=Tropheryma whipplei (strain TW08/27) GN=serS
PE=3 SV=1
Length = 417
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 380 HLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQY----GFHNLLCENTLKTSKHSRVE 435
+L G++ +++ YH++ +++ P++Y Y G H ++ + S++E
Sbjct: 222 YLTGTSEVAI-AGYHSDEILDISSGPIRYAGWSSCYRREAGSHGRDTRGIMRVHQFSKLE 280
Query: 436 NLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSES 495
+++ + ++ +E ++I S+ + +++ L + YR+ A+ L TS S
Sbjct: 281 -MFSYVHPQQS------------TRELEHIVSMQEKMLNLLEIPYRVSDIAAEELGTSAS 327
Query: 496 HRLEYQVYSYSLNSW 510
+ + + + S N+W
Sbjct: 328 RKYDLEAWIPSQNTW 342
>sp|Q83FJ7|SYS_TROWT Serine--tRNA ligase OS=Tropheryma whipplei (strain Twist) GN=serS
PE=3 SV=1
Length = 417
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 380 HLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQY----GFHNLLCENTLKTSKHSRVE 435
+L G++ +++ YH++ +++ P++Y Y G H ++ + S++E
Sbjct: 222 YLTGTSEVAI-AGYHSDEILDISSGPIRYAGWSSCYRREAGSHGRDTRGIMRVHQFSKLE 280
Query: 436 NLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSES 495
+++ + ++ +E ++I S+ + +++ L + YR+ A+ L TS S
Sbjct: 281 -MFSYVHPQQS------------TRELEHIVSMQEKMLNLLEIPYRVSDIAAEELGTSAS 327
Query: 496 HRLEYQVYSYSLNSW 510
+ + + + S N+W
Sbjct: 328 RKYDLEAWIPSQNTW 342
>sp|A9BEX3|SYS_PETMO Serine--tRNA ligase OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=serS PE=3 SV=1
Length = 424
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 79/378 (20%), Positives = 145/378 (38%), Gaps = 53/378 (14%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD----FTQMREKYKEFVGVEKITTELEHKLVDLE 210
D+K++ EN I L +R + S D F + R K + + + KLV
Sbjct: 3 DLKYIRENPQEIKEALTKRNNETSIIDEIISFDEERRKLLQQIETLRAQRNQNSKLV--- 59
Query: 211 QYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
K++ + + E+ ++ K++ +IK +S + + + N+ K+L +PN D+ P
Sbjct: 60 ---AKLKAQKKNDEAEEIIIQGKEISEQIKNLESDLKNIEDNLNYKLLCVPNIPDSGVPV 116
Query: 271 VYETIYEYDPDREGK------------------NKIDMDALSKYVQYTNRLDIHYLGNAA 312
+ + R GK N +D D +K +R I G+ A
Sbjct: 117 GKDENENLEVRRWGKPREFDFEPKAHWDLGTELNLLDFDRAAKLS--GSRFTI-LKGDIA 173
Query: 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEI 372
+ E + + D T H + L + G L E+DL +
Sbjct: 174 RLELALINFMIDLHTKDHGYTFILPPHLVTKETITSSGQ----------LPKFEDDLYKT 223
Query: 373 GYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHS 432
++ +L+ +A +S+ H N ++ LP+KYV C S
Sbjct: 224 SLDQM--YLISTAEVSL-AGLHRNETLEFNSLPLKYVAYTP--------CYRREAGSYGK 272
Query: 433 RVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHT 492
V + Q +KV LF T E+ + + + S + V+ LN+ YR+ L
Sbjct: 273 DVRGMIRQHQFDKVELFWYTTPEES-SQALEELTSHAEKVLQLLNLPYRVVALCTGDLGF 331
Query: 493 SESHRLEYQVYSYSLNSW 510
+ + + +V+ S N +
Sbjct: 332 AAAKTYDLEVWLPSYNDY 349
>sp|Q38UM4|SYS_LACSS Serine--tRNA ligase OS=Lactobacillus sakei subsp. sakei (strain
23K) GN=serS PE=3 SV=1
Length = 424
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D++ + EN ++L R ID +E D + EK + + T EL+ + +
Sbjct: 3 DIRVIRENVQWAKDKLATRGIDAAEIDEVVALDEKRRALI---VRTEELKKNRNAASEAI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269
V K E + ++ K + AEIK+ D+ + + + V +++LPN+ D+S P
Sbjct: 60 AVAKRNKEDAT--EQIAAMKNVGAEIKELDAQLAEVKEKVDYILVRLPNFPDDSAP 113
>sp|B7IS31|SYS_BACC2 Serine--tRNA ligase OS=Bacillus cereus (strain G9842) GN=serS PE=3
SV=1
Length = 424
Score = 36.2 bits (82), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 74/383 (19%), Positives = 148/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K FD+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDFDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFTFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|Q9CJ97|PRMA_LACLA Ribosomal protein L11 methyltransferase OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=prmA PE=3 SV=1
Length = 317
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 168 NQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLV--------NKSK 219
+Q + +I + DF ++ Y E + + ++ E+EHK+ +L Y + N S+
Sbjct: 44 DQFGEVLPEIEQSDFVEITAYYPENMPIVELKAEIEHKIANLSDYFSLTGLSVTTNNLSE 103
Query: 220 LEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNST---PEVYETIY 276
++ KKY E ++ ++ S+ DY K+++L + T P ++Y
Sbjct: 104 TNWAEAWKKYFEPARITHDLTIVPSWTEDYVATGSEKLIRLDPGMAFGTGTHPTTKMSLY 163
Query: 277 EYDPD-REGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEY 316
+ R G+ +D+ S + YLG A F Y
Sbjct: 164 ALEQVLRGGETLLDVGTGSGVLSVAAS----YLGAAEIFAY 200
>sp|A7GJT0|SYS_BACCN Serine--tRNA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=serS PE=3 SV=1
Length = 424
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 70/383 (18%), Positives = 151/383 (39%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F+ F ++ K +E + T EL+ K ++ Q
Sbjct: 3 DIKFLRANFEEVKEKLQHRGEDLADFECFEELDTKRRELL---VQTEELKSKRNEVSQQ- 58
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
++ K E E LE +++ +IK D+ + + + ++ +L +PN STP
Sbjct: 59 -ISMLKREKKDAEALILEMREVGEKIKGLDNELREVEEDLERLMLSIPNIPHESTPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVVRTWGEVKEFNFEPKPHWDLATDLGIVDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G ++ L+ +E+
Sbjct: 178 ISFMLDLHTEEHGYEEVLPPYMVNRASMTGTG-QLPKFEEDAFLIESEDYF--------- 227
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + ++ + LP++Y C + S L
Sbjct: 228 --LIPTAEVPV-TNMHRDEILSAEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVELVKFVKPEESY-EELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S +++ +C + A
Sbjct: 336 DIEVWLPSYDTYREISSCSNFEA 358
>sp|P82457|TRI18_MUSSP Midline-1 OS=Mus spretus GN=Mid1 PE=2 SV=1
Length = 667
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 142 KLSQLCSNV--SPSYDVKHVLENEDLIVNQLKQRR----IDISEFDFTQMREKYKEFVGV 195
KL Q C +V + S + E DL++ ++QRR I E ++R+ ++
Sbjct: 243 KLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKIKEGKVIRLRKLAQQIANC 302
Query: 196 EK-------ITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIK---KFDSF 245
++ + ++ EH L + + + +K ++ + L EI FD+F
Sbjct: 303 KQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFDTF 362
Query: 246 MLDYQRNVIIKVLKLPNYLDN-STPEVYETIYEYDPDREGKNKIDMDALS------KYVQ 298
LD+ R K+L+ +YL + P + E + D + D S +Y
Sbjct: 363 ALDFSREK--KLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI 420
Query: 299 YTNRLDIHYLGNAAKFEYLIPIILKDYFTV 328
+T + ++ L N+A ++P I ++++TV
Sbjct: 421 FTGQANVVSLCNSADSWMIVPNIKQNHYTV 450
>sp|Q1DAZ4|SYS_MYXXD Serine--tRNA ligase OS=Myxococcus xanthus (strain DK 1622) GN=serS
PE=3 SV=1
Length = 426
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 155 DVKHVLENEDLIVNQLKQR--RIDISEFD--FTQMREKYKEFVGVEKITTELEHKLVDLE 210
D+++V +N D +V +LK R +D+ F F + RE Y V VE + +++
Sbjct: 3 DLRNVAQNFDAVVARLKTRGGNLDLGPFQRLFAERRELY---VSVESLAARRNAANEEMK 59
Query: 211 QYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
+ K+K +P L+ + + + EIK+ ++ + D + + +L +PN S PE
Sbjct: 60 R-----KAKEDPKALDALRGDLRAVSQEIKEKEARLKDVEEELNRILLLIPNVPHESVPE 114
Query: 271 -------VYETIYEYDPDR--------EGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFE 315
V +I+ PD E K+ M + + + Y G A+ E
Sbjct: 115 GGGAEDNVQVSIWGQKPDLLFAPKQHFELGEKLGMLDFERAAKVSGSRFTFYKGALARLE 174
Query: 316 YLIPIILKDYFTVK 329
+ + D T K
Sbjct: 175 RALVTFMIDVHTSK 188
>sp|A3PE37|SYS_PROM0 Serine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301)
GN=serS PE=3 SV=1
Length = 425
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 390 FCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLF 449
A+H N ++ K LP+KYV C S + L Q KV L+
Sbjct: 238 LTAFHRNELIDPKKLPIKYVAYSP--------CFRREAGSYGRDTKGLIRLHQFNKVELY 289
Query: 450 VGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYS--- 506
+ ++L + + I S +S++ KLN+ YR+ L S S + +V+ S
Sbjct: 290 WFCDPSKSL-EAHKKITSDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSKC 348
Query: 507 ---LNSWVTCMDLNAK 519
++S C+D A+
Sbjct: 349 YREISSCSNCLDFQAR 364
>sp|B9K8V5|SYS_THENN Serine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC 49049 /
DSM 4359 / NS-E) GN=serS PE=3 SV=1
Length = 425
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 75/377 (19%), Positives = 145/377 (38%), Gaps = 51/377 (13%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D+K + ++ D + + LK+R D D ++ + E+ V EL K D+ + +
Sbjct: 3 DIKLIRQDPDFVKDALKKRGEDTDIID--EILKIDSEWRSVTTELNELRAKRNDISKNVA 60
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYET 274
K + + S+ E K++ EIK + + Q + +L++PN S P +
Sbjct: 61 KLKKEGKSSEANALIEEGKRIGEEIKSLEEKEKELQSKLRDLLLRVPNIPHESVPVGSDE 120
Query: 275 IYEYDPDREGKNK------------------IDMDALSKYVQYTNRLDIHYLGNAAKFEY 316
+ R G+ + +D D SK +R + Y G A+ E
Sbjct: 121 SQNVEVRRWGEPRKFDFAPLAHWDLGPAWGLMDFDRASKL--SGSRFTVMY-GKLARLER 177
Query: 317 LIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEE 376
+ + D T +H + L K + G L + + + ++DL
Sbjct: 178 ALINFMLDVHTREHGYTEVWVPHLVKRETITITGQ--LPKFEEELYLTEKDDL------- 228
Query: 377 RRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVEN 436
L+ +A + + A H+ + KDLP KYV C S V
Sbjct: 229 ---FLIPTAEVPL-VALHSGEILEEKDLPKKYVAYTP--------CYRREAGSYGKDVRG 276
Query: 437 LYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLK---SVMDKLNMKYRICKAPADVLHTS 493
+ Q +KV L T + F +++ L++ +++ +L + YR+ L +
Sbjct: 277 MIRQHQFDKVELVWITTPE----RSFDDLEQLVRDAETILQRLGLPYRVVSLCTGDLGFA 332
Query: 494 ESHRLEYQVYSYSLNSW 510
+ + +V+ S N++
Sbjct: 333 SAKTYDIEVWLPSYNAY 349
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 142 KLSQLCSNV--SPSYDVKHVLENEDLIVNQLKQRR----IDISEFDFTQMREKYKEFVGV 195
KL Q C +V + S + E DL++ ++QRR I E ++R+ ++
Sbjct: 243 KLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKIKEGKVMRLRKLAQQIANC 302
Query: 196 EK-------ITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIK---KFDSF 245
++ + ++ EH L + + + +K ++ + L EI FD+F
Sbjct: 303 KQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFDTF 362
Query: 246 MLDYQRNVIIKVLKLPNYLDN-STPEVYETIYEYDPDREGKNKIDMDALS------KYVQ 298
LD+ R K+L+ +YL + P + E + D + D S +Y
Sbjct: 363 ALDFSREK--KLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI 420
Query: 299 YTNRLDIHYLGNAAKFEYLIPIILKDYFTV 328
+T + ++ L N+A ++P I ++++TV
Sbjct: 421 FTGQANVVSLCNSADSWMIVPNIKQNHYTV 450
>sp|Q73KB2|SYS_TREDE Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=serS PE=3 SV=1
Length = 422
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 117/311 (37%), Gaps = 42/311 (13%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D K + EN + + +K R ++ ++ +K V T L++ D
Sbjct: 3 DYKFIKENVEAVKQNIKNRHMNADADKAVELYDKRTALV------TSLQNLQKDRNDNSQ 56
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYET 274
K KL P + +K + K +K +I + ++ + + ++ + V K+PN P E
Sbjct: 57 SMKQKLSPEERQKLVDQGKAIKEKIAQVEAELAEAEKALHEAVSKIPNMAHPEAPVGKED 116
Query: 275 IYEYDPDREGK-NKIDMDALSKYVQYTNRLDI--------------HYLGNAAKFEYLIP 319
+ R G K D + +VQ LD+ ++L N A F
Sbjct: 117 SDNLEVKRCGTVPKFDFEP-KDHVQLGQDLDLIDFEAGTKVSGVKFYFLKNEAVFLEQAL 175
Query: 320 IILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRN 379
+ KH F PF D+ K I+ G G + N+ + E
Sbjct: 176 TMYGLNILRKHGFKPFITPDIAKEEILYGIGFNPRGEESNVYSLEGEGTC---------- 225
Query: 380 HLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN 439
LV +A +++ YH++ + + LP+KY G + + S+ LY
Sbjct: 226 -LVATAEITL-GGYHSDEIIKKESLPLKYC------GLSHCFRREAGAAGQFSK--GLYR 275
Query: 440 SIQREKVNLFV 450
Q K+ +FV
Sbjct: 276 VHQFSKLEMFV 286
>sp|Q81JC4|SYS_BACCR Serine--tRNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=serS PE=3 SV=1
Length = 424
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 74/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E YE P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFTYEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|B7HII5|SYS_BACC4 Serine--tRNA ligase OS=Bacillus cereus (strain B4264) GN=serS PE=3
SV=1
Length = 424
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 74/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E YE P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFTYEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|Q4A127|HSDR_STAS1 Type-1 restriction enzyme R protein OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=hsdR PE=3 SV=1
Length = 930
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 68 DEHALKEHFRTKVHKRRLKALEVEPYTVEESER----AAGYGSYQTPKI-RKLQTQSLDK 122
+E L ++FR+ +++R L +P T +E +R G G +++ +I R D
Sbjct: 29 NEQQLLDNFRSILNERHADKLNGDPLTDKEFQRLLTMINGKGIFESARILRDKMPLKRDD 88
Query: 123 TAEIQ----PVREYCSALFITNDKLSQLCSNVSPSYDVKHVLENEDLIVNQLKQRRIDIS 178
+E+ R +C F +++S + YDV ++ L+ +LK+R IDI+
Sbjct: 89 ESEVYLSFLDTRHWCQNKFQITNQVS-VDDTYKARYDVTILINGLPLVQIELKRRGIDIN 147
Query: 179 EFDFTQMREKYKEFVGV 195
E MR + + + G+
Sbjct: 148 EAFNQVMRYRKQNYTGL 164
>sp|Q96JL9|ZN333_HUMAN Zinc finger protein 333 OS=Homo sapiens GN=ZNF333 PE=2 SV=3
Length = 665
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSY 107
GE + C C R F + +L++H RT K+ PY +E RA G S+
Sbjct: 558 GEKPYVCQECGRAFSEPSSLRKHARTHSGKK--------PYACQECGRAFGQSSH 604
>sp|B7JY63|SYS_CYAP8 Serine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=serS
PE=3 SV=1
Length = 427
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D+K + EN D I +L RR +E+D T + ++ ++ +E T+L+ + ++ + +
Sbjct: 3 DLKQIRENPDYI-QELLNRRSASNEYDLTPILDRDRQQRDIEATRTQLQARSNEIGKLIG 61
Query: 215 VN-KSKLEPSQLEKKYL--ERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269
KS + P E + L E LK ++ + + + + +L+LPN STP
Sbjct: 62 QKMKSGINPQSEEIQALKTEGNDLKTQLSELEPQEKQLKSEIEALLLQLPNLPSESTP 119
>sp|B8CZZ9|SYS_HALOH Serine--tRNA ligase OS=Halothermothrix orenii (strain H 168 / OCM
544 / DSM 9562) GN=serS PE=3 SV=1
Length = 422
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 36/240 (15%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D+K + EN + + + LK+R + +F ++ EK +E + + +L+HK +
Sbjct: 3 DMKFIRENLETVADMLKRRGTEAPLDEFKELDEKRREII---QEVEQLKHKRNVVSSK-- 57
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP----- 269
+ + K E K++ A IKK+D + + + VL +PN +S P
Sbjct: 58 IGELKRAGEDASDIIAEMKEVSATIKKYDEELRGIEERLQQVVLSIPNMPHDSVPVGEDE 117
Query: 270 ----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIP 319
E + +E+ P + +D+ + + + G A+ E +
Sbjct: 118 DDNVEVRRWGEPRKFDFEFKPHWDLGEALDILDFERGSKVSGARFTFLKGAGARLERSLI 177
Query: 320 IILKDYFT---VKHNFMPF-TNTDLCKGVI-----------VEGYGDHYLSPHDNMVLVN 364
+ D+ T F PF N+D C G VEG D+YL P + + N
Sbjct: 178 SFMIDHHTQNGYTEIFPPFMVNSDSCIGTGQLPKFAGDMFKVEGT-DYYLIPTAEVPVTN 236
>sp|Q73FJ3|SYS_BACC1 Serine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=serS
PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAESLILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLXNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|B3DX68|SYS_METI4 Serine--tRNA ligase OS=Methylacidiphilum infernorum (isolate V4)
GN=serS PE=3 SV=1
Length = 421
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 55/318 (17%), Positives = 120/318 (37%), Gaps = 50/318 (15%)
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNST----PE 270
+ K++ +E ++ E K++ + I++ + ++ ++ + +L LPN +S PE
Sbjct: 60 IGLKKIKGENVEGQFSELKKMGSRIEEMEKELIQFENQINTLLLSLPNIPHDSVPTGGPE 119
Query: 271 VYETIYEYDPDREGK----------NKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPI 320
+ + + R+ ++ + L + + + + GN AK + +
Sbjct: 120 ANKVVKTWGEPRQANFPLKTHWELGRELGILDLERGAKLSGSGFSLFTGNGAKLQRALIQ 179
Query: 321 ILKDYFTVKHNFM----PFTNTDLC---KGVIVEGYGDHYLSPHDNMVLVNNENDLSEIG 373
+ T +H + P+ T+ C G + + D Y + DN+ L+
Sbjct: 180 FMLTIHTEEHGYKELWPPYLVTEDCMRGTGHLPKFALDMYATDKDNLYLIP--------- 230
Query: 374 YEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSR 433
G ++ F H + + LP++YV C S
Sbjct: 231 --------TGEVPLTNF---HRDEILAESSLPLRYVAYTP--------CFRREAGSAGKD 271
Query: 434 VENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTS 493
L Q +KV L V EN + + S ++++ LN+ YR+ + +
Sbjct: 272 TRGLLRLHQFDKVEL-VQITKPENSYTALEEMVSHAENILRSLNLCYRVVLLASQDMGFG 330
Query: 494 ESHRLEYQVYSYSLNSWV 511
+ + +V+S + SW+
Sbjct: 331 AAKCYDLEVWSPGIQSWL 348
>sp|A8G5Y6|SYS_PROM2 Serine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9215)
GN=serS PE=3 SV=1
Length = 425
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 305 IHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVN 364
+ +GN A+ E + + D T K+ ++ L ++G G L N
Sbjct: 167 VTLIGNGARLERALINFMLDMHT-KNGYLELMPPALVNSESLKGSGQ--LPKFSNESFKC 223
Query: 365 NENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCEN 424
+ +DL L +A + + A+H N ++ K LP+KYV C
Sbjct: 224 SNDDL----------WLSPTAEVPL-TAFHRNELIDPKQLPIKYVAYSP--------CFR 264
Query: 425 TLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICK 484
S + L Q KV L+ + ++L + + I S +++ KLN+ YRI
Sbjct: 265 REAGSYGKDTKGLIRLHQFNKVELYWFCDPTKSL-EAHKKITSDAENIFKKLNLPYRIVD 323
Query: 485 APADVLHTSESHRLEYQVYSYS------LNSWVTCMDLNAK 519
L S S + +V+ S ++S C+D A+
Sbjct: 324 ICTGDLGFSSSRTFDLEVWLPSSKCYREISSCSNCLDFQAR 364
>sp|Q6HPZ8|SYS_BACHK Serine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=serS PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|C1ES19|SYS_BACC3 Serine--tRNA ligase OS=Bacillus cereus (strain 03BB102) GN=serS
PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|B7JJC8|SYS_BACC0 Serine--tRNA ligase OS=Bacillus cereus (strain AH820) GN=serS PE=3
SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|Q81W25|SYS_BACAN Serine--tRNA ligase OS=Bacillus anthracis GN=serS PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|A0R891|SYS_BACAH Serine--tRNA ligase OS=Bacillus thuringiensis (strain Al Hakam)
GN=serS PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|C3LIY9|SYS_BACAC Serine--tRNA ligase OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=serS PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|C3P9G2|SYS_BACAA Serine--tRNA ligase OS=Bacillus anthracis (strain A0248) GN=serS
PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 147/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N + LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKEQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1
Length = 667
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 142 KLSQLCSNV--SPSYDVKHVLENEDLIVNQLKQRR----IDISEFDFTQMREKYKEFVGV 195
KL Q C +V + S + E DL++ +++RR I E ++R+ ++
Sbjct: 243 KLIQTCQHVEVNASRQEAKLTEECDLLIEIIQERRQIIGTKIKEGKVMRLRKLAQQIANC 302
Query: 196 EK-------ITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIK---KFDSF 245
++ + ++ EH L + + + +K ++ + L EI FD+F
Sbjct: 303 KQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFDTF 362
Query: 246 MLDYQRNVIIKVLKLPNYLDN-STPEVYETIYEYDPDREGKNKIDMDALS------KYVQ 298
LD+ R K+L+ +YL + P + E + D + D S +Y
Sbjct: 363 ALDFSREK--KLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI 420
Query: 299 YTNRLDIHYLGNAAKFEYLIPIILKDYFTV 328
+T + ++ L N+A ++P I ++++TV
Sbjct: 421 FTGQANVVSLCNSADSWMIVPNIKQNHYTV 450
>sp|B9MQM8|SYS_CALBD Serine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=serS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 135/373 (36%), Gaps = 45/373 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEH-KLVDLEQYL 213
D+K++ N + + L +R D+S ++ E+ + K+ E+E K + ++
Sbjct: 3 DLKYIRANPEKVQEGLSKRNKDVSIAPILELDERRR------KLLAEVESLKALQNQKSK 56
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K K E + E K L +IK+ DS + + + + +L +PN S P
Sbjct: 57 EVPKLKKEGKDVTDLMNELKDLSDKIKELDSKVKEVEDEIEKILLTIPNIPHESVPVGKD 116
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P E + + + + + Y G A+ E +
Sbjct: 117 DTENVEVRRWGEVREPDFEIKPHWEIGVNLGILDFERASKVSGSRFTFYRGLGARLERAL 176
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D KH + T+L +L +M+ E ++
Sbjct: 177 INFMLDLHIEKHGY-----TELFP---------PFLVARKSMIGTGQLPKFEEDAFKTTD 222
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
++ + YH + +DLP+KYV C + L
Sbjct: 223 DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSA--------CFRAEAGAAGKDTRGLI 274
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ E + + + + V+ +L + YR+ + L S +
Sbjct: 275 RQHQFNKVEL-VKFTKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTY 333
Query: 499 EYQVYSYSLNSWV 511
+ +V+ S +V
Sbjct: 334 DIEVWMPSYGRYV 346
>sp|P53863|JJJ1_YEAST J protein JJJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JJJ1 PE=1 SV=1
Length = 590
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 50 DKPGEAQFY-CLHCARHFIDEHALKEHFRTKVHKRRL 85
DK GE Y C C + F E LK H TK+HK+ +
Sbjct: 330 DKEGEVLIYECFICNKTFKSEKQLKNHINTKLHKKNM 366
>sp|A5IMJ4|SYS_THEP1 Serine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=serS PE=3 SV=1
Length = 425
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 74/378 (19%), Positives = 147/378 (38%), Gaps = 53/378 (14%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + +N DL+ L++R D + D ++ ++ + T EL + ++ + +
Sbjct: 3 DIKLIRQNPDLVKEALRKRGEDPATIDEILKIDADWRTTI---TKTNELRSRRNEISKNV 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYE 273
K + + ++ E E K+L EIK + + Q+ + +L +PN S P +
Sbjct: 60 ARLKKEGKNTEAEALIEEGKRLGEEIKALEEKEKELQKQLNDLLLMVPNIPHESVPVGED 119
Query: 274 TIYEYDPDREGKNK------------------IDMDALSKYVQYTNRLDIHYLGNAAKFE 315
+ R G+ + +D D +K +R + Y G A+ E
Sbjct: 120 ESQNVEVRRWGEPREFDFTPLAHWDLGPAWGLMDFDRATKL--SGSRFTVMY-GKLARLE 176
Query: 316 YLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYE 375
+ + D T +H + L K + G L + + + +DL
Sbjct: 177 RALINFMLDVHTKEHGYTEVWVPHLVKRETITITGQ--LPKFEEELYLAERDDL------ 228
Query: 376 ERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVE 435
L+ +A + + A H+ + K+LP KYV C S V
Sbjct: 229 ----FLIPTAEVPL-AALHSGEILEEKELPKKYVAYTP--------CYRREAGSYGKDVR 275
Query: 436 NLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLK---SVMDKLNMKYRICKAPADVLHT 492
+ Q +KV L T + F++++ L+K +++ KL + YR+ L
Sbjct: 276 GMIRQHQFDKVELVWVTTPE----RSFEDLEQLVKDAETILQKLELPYRVVSLCTGDLGF 331
Query: 493 SESHRLEYQVYSYSLNSW 510
+ + + +V+ S N++
Sbjct: 332 TSAKTYDIEVWLPSYNAY 349
>sp|B9M3Q9|SYS_GEOSF Serine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=serS PE=3
SV=1
Length = 422
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
DV+++ EN +L+ +LK R I F Q+ + +E + + L +K+ +
Sbjct: 3 DVRYIRENLELVETRLKTRGTGIDLERFRQLDSQRRELLQQTETLKALRNKVSEE----- 57
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP----- 269
+++ K + SQ + + E +++ +K D + + + +L +PN ++TP
Sbjct: 58 ISRVK-DKSQAQDRIAEMREVSQRVKGLDEELKGVEEALEYFLLTVPNIPSSATPVGASE 116
Query: 270 ----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIP 319
E + P E +D+ + + T Y G A+ E +
Sbjct: 117 ADNVEIRVWGEKPHLDFTPKPHWEIGEDLDILDFERGAKLTGARFTLYKGLGARLERALV 176
Query: 320 IILKDYFTVKHNFM 333
+ D T +HN++
Sbjct: 177 NFMLDLHTGRHNYL 190
>sp|B9IYI0|SYS_BACCQ Serine--tRNA ligase OS=Bacillus cereus (strain Q1) GN=serS PE=3
SV=1
Length = 424
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 146/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKDQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
>sp|B7HPS8|SYS_BACC7 Serine--tRNA ligase OS=Bacillus cereus (strain AH187) GN=serS PE=3
SV=1
Length = 424
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 146/383 (38%), Gaps = 46/383 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFD-FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213
D+K + N + + +L+ R D+++F F ++ + +E + T EL+ K ++ Q +
Sbjct: 3 DIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELL---VQTEELKSKRNEVSQQI 59
Query: 214 LVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
V K E E LE +++ ++K D+ + + ++ +L +PN S P
Sbjct: 60 SVLKR--EKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGET 117
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLI 318
EV E +E P + + + + + T + Y G A+ E +
Sbjct: 118 EDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERAL 177
Query: 319 PIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378
+ D T +H + + + G G L E D I E+
Sbjct: 178 ISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQ----------LPKFEEDAFRIESED-- 225
Query: 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438
L+ +A + + H + +N LP++Y C + S L
Sbjct: 226 YFLIPTAEVPV-TNMHRDEILNKDQLPIRYAAFSS--------CFRSEAGSAGRDTRGLI 276
Query: 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498
Q KV L V E+ +E + + + + V+ L + YR+ L + + +
Sbjct: 277 RQHQFNKVEL-VKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKY 335
Query: 499 EYQVYSYSLNSW---VTCMDLNA 518
+ +V+ S ++ +C + A
Sbjct: 336 DIEVWIPSYGTYREISSCSNFEA 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 255,880,334
Number of Sequences: 539616
Number of extensions: 11097099
Number of successful extensions: 35223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 34956
Number of HSP's gapped (non-prelim): 485
length of query: 680
length of database: 191,569,459
effective HSP length: 124
effective length of query: 556
effective length of database: 124,657,075
effective search space: 69309333700
effective search space used: 69309333700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)