Query psy10095
Match_columns 680
No_of_seqs 385 out of 1492
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:44:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0172 SerS Seryl-tRNA synthe 100.0 4.1E-95 9E-100 786.5 35.7 381 153-597 1-401 (429)
2 PLN02320 seryl-tRNA synthetase 100.0 2.3E-92 5E-97 779.9 37.9 349 146-523 59-422 (502)
3 PLN02678 seryl-tRNA synthetase 100.0 5.5E-90 1.2E-94 756.5 36.1 345 153-523 1-366 (448)
4 KOG2509|consensus 100.0 3.1E-90 6.7E-95 736.8 26.6 350 152-523 1-375 (455)
5 PRK05431 seryl-tRNA synthetase 100.0 1.6E-80 3.5E-85 681.2 35.9 344 153-523 1-359 (425)
6 TIGR00414 serS seryl-tRNA synt 100.0 1.2E-78 2.7E-83 665.1 36.0 343 153-523 1-361 (418)
7 cd00770 SerRS_core Seryl-tRNA 100.0 3.4E-49 7.4E-54 415.5 20.6 229 273-524 2-241 (297)
8 PRK00960 seryl-tRNA synthetase 100.0 2.4E-43 5.1E-48 392.5 21.8 240 267-523 171-455 (517)
9 TIGR00415 serS_MJ seryl-tRNA s 100.0 1.8E-40 3.9E-45 365.9 19.3 230 284-526 194-455 (520)
10 KOG3408|consensus 100.0 9.5E-42 2.1E-46 309.1 6.5 109 12-122 13-122 (129)
11 cd00778 ProRS_core_arch_euk Pr 100.0 3.5E-38 7.5E-43 326.3 16.4 215 288-523 7-225 (261)
12 cd00779 ProRS_core_prok Prolyl 100.0 1.7E-37 3.6E-42 320.3 16.5 212 288-523 7-218 (255)
13 cd00772 ProRS_core Prolyl-tRNA 100.0 4.8E-35 1E-39 303.7 18.7 215 289-523 8-225 (264)
14 COG5112 UFD2 U1-like Zn-finger 100.0 4.4E-36 9.6E-41 266.4 4.6 102 1-105 1-104 (126)
15 cd00771 ThrRS_core Threonyl-tR 100.0 1.3E-32 2.8E-37 289.8 11.8 251 286-572 1-256 (298)
16 PF00587 tRNA-synt_2b: tRNA sy 100.0 1.6E-30 3.5E-35 252.2 10.7 171 314-507 1-173 (173)
17 PLN02837 threonine-tRNA ligase 100.0 3.4E-28 7.3E-33 278.8 15.4 183 283-489 215-401 (614)
18 PRK09194 prolyl-tRNA synthetas 99.9 7.9E-27 1.7E-31 265.3 19.1 210 285-522 21-230 (565)
19 TIGR00409 proS_fam_II prolyl-t 99.9 2.2E-25 4.7E-30 253.4 18.1 214 285-527 21-234 (568)
20 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 3E-25 6.5E-30 223.2 16.6 195 311-525 1-203 (235)
21 PRK08661 prolyl-tRNA synthetas 99.9 1.9E-25 4.1E-30 249.4 16.7 218 284-523 15-236 (477)
22 PRK03991 threonyl-tRNA synthet 99.9 3.5E-24 7.7E-29 245.1 17.4 184 284-490 196-383 (613)
23 PLN02908 threonyl-tRNA synthet 99.9 2.9E-24 6.3E-29 249.2 15.8 180 283-487 290-471 (686)
24 TIGR00408 proS_fam_I prolyl-tR 99.9 6.8E-23 1.5E-27 228.7 14.8 215 288-523 13-231 (472)
25 TIGR00418 thrS threonyl-tRNA s 99.9 2E-22 4.4E-27 228.8 17.1 184 284-490 169-355 (563)
26 PRK12305 thrS threonyl-tRNA sy 99.9 1.7E-22 3.6E-27 230.1 11.5 209 284-520 175-388 (575)
27 PRK14799 thrS threonyl-tRNA sy 99.9 3.5E-21 7.5E-26 217.9 15.4 210 283-523 136-387 (545)
28 PRK12444 threonyl-tRNA synthet 99.9 3.8E-21 8.2E-26 221.8 15.2 176 283-482 243-420 (639)
29 PRK12325 prolyl-tRNA synthetas 99.8 1.9E-18 4.1E-23 191.6 16.9 191 284-498 20-210 (439)
30 PF02403 Seryl_tRNA_N: Seryl-t 99.7 1.2E-17 2.6E-22 151.4 11.9 107 153-264 1-108 (108)
31 PRK00413 thrS threonyl-tRNA sy 99.7 2.9E-16 6.2E-21 181.1 15.7 188 284-494 240-432 (638)
32 PRK04173 glycyl-tRNA synthetas 99.7 2.3E-16 5E-21 175.8 13.7 209 302-523 28-294 (456)
33 KOG3408|consensus 99.7 3.7E-17 8E-22 149.4 4.1 72 595-667 18-122 (129)
34 cd00774 GlyRS-like_core Glycyl 99.4 3.6E-13 7.9E-18 139.5 7.0 199 289-522 3-212 (254)
35 COG5112 UFD2 U1-like Zn-finger 99.3 1.7E-13 3.6E-18 122.9 0.9 42 616-659 43-111 (126)
36 cd00768 class_II_aaRS-like_cor 99.3 2.4E-11 5.3E-16 118.9 14.6 175 317-523 4-181 (211)
37 COG0441 ThrS Threonyl-tRNA syn 99.0 8.2E-10 1.8E-14 126.3 11.1 179 283-485 188-370 (589)
38 COG0442 ProS Prolyl-tRNA synth 98.8 2.5E-08 5.3E-13 112.5 13.7 198 283-506 19-216 (500)
39 PRK09537 pylS pyrolysyl-tRNA s 98.8 1.8E-08 3.9E-13 111.3 12.2 149 308-500 203-353 (417)
40 KOG2324|consensus 98.7 1.4E-07 3E-12 101.2 14.3 208 288-522 28-236 (457)
41 cd00773 HisRS-like_core Class 98.7 1E-07 2.3E-12 98.8 12.0 143 312-485 2-144 (261)
42 PRK14894 glycyl-tRNA synthetas 98.5 8.3E-07 1.8E-11 99.8 13.8 208 302-523 30-272 (539)
43 KOG1637|consensus 98.5 2.5E-07 5.5E-12 101.8 9.4 176 284-483 162-339 (560)
44 PF12171 zf-C2H2_jaz: Zinc-fin 98.5 3.2E-08 7E-13 68.8 1.5 27 56-82 1-27 (27)
45 PRK07080 hypothetical protein; 98.2 4.8E-05 1E-09 81.4 16.1 198 295-517 29-259 (317)
46 smart00451 ZnF_U1 U1-like zinc 98.2 1.1E-06 2.4E-11 63.9 2.5 35 54-88 1-35 (35)
47 COG0423 GRS1 Glycyl-tRNA synth 98.1 1.8E-05 3.8E-10 89.1 10.3 222 288-523 10-330 (558)
48 TIGR00389 glyS_dimeric glycyl- 98.0 3.9E-05 8.5E-10 88.0 12.8 219 288-523 7-324 (551)
49 PRK00037 hisS histidyl-tRNA sy 97.8 0.00011 2.3E-09 81.1 11.8 146 302-480 8-155 (412)
50 TIGR00442 hisS histidyl-tRNA s 97.8 0.00018 3.8E-09 79.1 12.9 150 303-482 5-157 (397)
51 PLN02734 glycyl-tRNA synthetas 97.8 0.00074 1.6E-08 79.1 17.9 205 302-523 99-423 (684)
52 TIGR02367 PylS pyrrolysyl-tRNA 97.6 0.00042 9.1E-09 77.5 11.8 134 311-484 242-377 (453)
53 CHL00201 syh histidine-tRNA sy 97.6 0.00062 1.4E-08 76.2 13.0 143 309-482 15-162 (430)
54 TIGR00443 hisZ_biosyn_reg ATP 97.6 0.00047 1E-08 73.8 11.5 136 309-478 5-142 (314)
55 PF01409 tRNA-synt_2d: tRNA sy 97.3 0.002 4.4E-08 67.3 11.8 170 311-517 19-195 (247)
56 PLN02530 histidine-tRNA ligase 97.2 0.0019 4.1E-08 73.5 11.6 155 295-483 66-227 (487)
57 PRK12292 hisZ ATP phosphoribos 97.2 0.0022 4.7E-08 70.9 11.4 144 308-482 13-158 (391)
58 PRK12420 histidyl-tRNA synthet 97.2 0.0028 6.2E-08 70.6 11.9 143 307-482 13-158 (423)
59 PRK00488 pheS phenylalanyl-tRN 97.1 0.089 1.9E-06 57.6 22.2 153 330-526 124-293 (339)
60 COG0016 PheS Phenylalanyl-tRNA 97.1 0.0056 1.2E-07 66.6 12.5 162 321-526 119-290 (335)
61 PTZ00326 phenylalanyl-tRNA syn 96.9 0.016 3.4E-07 66.2 14.3 91 404-517 356-446 (494)
62 PRK12293 hisZ ATP phosphoribos 96.8 0.0081 1.8E-07 63.9 11.1 132 307-485 14-147 (281)
63 PF12874 zf-met: Zinc-finger o 96.8 0.00072 1.6E-08 45.7 1.9 25 57-81 1-25 (25)
64 COG0124 HisS Histidyl-tRNA syn 96.8 0.012 2.5E-07 66.3 12.3 148 311-489 17-168 (429)
65 PRK12421 ATP phosphoribosyltra 96.7 0.013 2.8E-07 65.1 11.8 142 308-482 17-161 (392)
66 PLN02853 Probable phenylalanyl 96.6 0.037 8E-07 63.1 14.6 183 307-517 216-431 (492)
67 TIGR00468 pheS phenylalanyl-tR 95.9 0.19 4.1E-06 53.9 14.9 148 329-517 87-240 (294)
68 PLN02972 Histidyl-tRNA synthet 95.7 0.069 1.5E-06 63.9 11.6 140 307-482 336-478 (763)
69 KOG0717|consensus 95.4 0.0056 1.2E-07 68.3 0.9 33 57-89 293-325 (508)
70 PF13393 tRNA-synt_His: Histid 95.4 0.11 2.4E-06 55.1 10.6 136 308-478 6-144 (311)
71 PRK04172 pheS phenylalanyl-tRN 95.3 0.3 6.5E-06 55.9 14.4 180 306-517 227-438 (489)
72 cd00669 Asp_Lys_Asn_RS_core As 94.7 0.98 2.1E-05 47.9 15.4 159 315-518 4-198 (269)
73 PF06220 zf-U1: U1 zinc finger 94.7 0.023 5.1E-07 43.1 2.3 32 56-87 3-36 (38)
74 PRK12295 hisZ ATP phosphoribos 94.6 0.24 5.2E-06 54.9 10.8 125 317-479 9-136 (373)
75 cd00775 LysRS_core Lys_tRNA sy 93.4 0.71 1.5E-05 50.3 11.6 114 315-469 11-125 (329)
76 TIGR00470 sepS O-phosphoseryl- 93.4 0.22 4.7E-06 56.7 7.6 102 402-526 204-308 (533)
77 COG5188 PRP9 Splicing factor 3 93.2 0.022 4.7E-07 61.8 -0.5 35 56-90 238-272 (470)
78 PRK00484 lysS lysyl-tRNA synth 93.1 0.49 1.1E-05 54.4 10.2 115 315-469 174-289 (491)
79 PF00152 tRNA-synt_2: tRNA syn 92.6 0.59 1.3E-05 50.6 9.6 126 312-473 22-147 (335)
80 PRK09350 poxB regulator PoxA; 92.6 0.32 6.9E-06 52.4 7.4 117 316-466 8-124 (306)
81 PRK06462 asparagine synthetase 91.9 0.71 1.5E-05 50.5 9.1 120 315-468 33-153 (335)
82 PF00096 zf-C2H2: Zinc finger, 91.8 0.11 2.4E-06 34.2 1.7 22 57-78 1-22 (23)
83 TIGR00459 aspS_bact aspartyl-t 91.7 0.66 1.4E-05 54.4 9.0 132 313-486 139-274 (583)
84 PRK05159 aspC aspartyl-tRNA sy 91.4 0.99 2.1E-05 51.1 9.9 125 302-467 122-251 (437)
85 KOG4163|consensus 91.4 1.1 2.4E-05 50.3 9.8 197 288-510 73-279 (551)
86 PLN02903 aminoacyl-tRNA ligase 91.3 0.71 1.5E-05 54.7 8.7 130 316-485 206-339 (652)
87 TIGR00499 lysS_bact lysyl-tRNA 91.1 0.65 1.4E-05 53.5 8.1 116 313-469 173-289 (496)
88 PF13912 zf-C2H2_6: C2H2-type 90.9 0.17 3.6E-06 34.7 1.9 22 57-78 2-23 (27)
89 TIGR00458 aspS_arch aspartyl-t 90.7 1.1 2.3E-05 50.7 9.2 113 313-467 134-247 (428)
90 PLN02502 lysyl-tRNA synthetase 90.4 1 2.2E-05 52.5 8.9 114 315-468 231-345 (553)
91 PF12756 zf-C2H2_2: C2H2 type 90.3 0.15 3.2E-06 44.3 1.6 31 56-86 50-80 (100)
92 PRK03932 asnC asparaginyl-tRNA 90.3 1.1 2.3E-05 51.1 8.8 123 312-468 133-256 (450)
93 PTZ00417 lysine-tRNA ligase; P 90.2 1.2 2.6E-05 52.3 9.3 116 315-469 255-370 (585)
94 PRK00476 aspS aspartyl-tRNA sy 90.0 0.97 2.1E-05 53.1 8.4 131 314-485 143-276 (588)
95 cd00776 AsxRS_core Asx tRNA sy 89.6 1.5 3.2E-05 47.7 8.8 115 313-469 25-140 (322)
96 PLN02532 asparagine-tRNA synth 89.5 1.1 2.5E-05 52.9 8.4 50 407-471 391-441 (633)
97 PRK12820 bifunctional aspartyl 89.5 2.4 5.2E-05 50.9 11.1 144 302-485 142-290 (706)
98 PTZ00401 aspartyl-tRNA synthet 89.0 0.46 9.9E-06 55.4 4.7 116 311-467 212-328 (550)
99 PLN02748 tRNA dimethylallyltra 88.1 0.28 6E-06 56.1 2.1 35 55-89 417-452 (468)
100 PRK12445 lysyl-tRNA synthetase 88.0 3.4 7.3E-05 47.8 10.8 115 315-468 186-300 (505)
101 PLN02603 asparaginyl-tRNA synt 87.4 1.2 2.6E-05 52.1 6.8 39 310-350 224-262 (565)
102 cd00777 AspRS_core Asp tRNA sy 87.1 2.8 6E-05 44.8 8.8 107 323-469 11-118 (280)
103 PTZ00385 lysyl-tRNA synthetase 87.0 3.3 7.2E-05 49.3 10.1 128 301-467 217-348 (659)
104 TIGR00462 genX lysyl-tRNA synt 86.8 1.2 2.5E-05 48.2 5.8 128 317-483 6-133 (304)
105 PLN02221 asparaginyl-tRNA synt 86.2 2.4 5.1E-05 49.8 8.3 50 407-471 328-378 (572)
106 PLN02850 aspartate-tRNA ligase 85.9 2.5 5.5E-05 49.1 8.3 116 311-467 224-340 (530)
107 PHA02768 hypothetical protein; 84.7 0.48 1E-05 39.0 1.3 22 57-78 6-27 (55)
108 TIGR00457 asnS asparaginyl-tRN 84.3 2.7 5.8E-05 47.9 7.5 123 312-468 136-259 (453)
109 PF07106 TBPIP: Tat binding pr 83.8 11 0.00023 37.2 10.5 68 177-250 69-136 (169)
110 PF13894 zf-C2H2_4: C2H2-type 83.7 0.73 1.6E-05 29.7 1.6 22 57-78 1-22 (24)
111 PRK12294 hisZ ATP phosphoribos 83.5 12 0.00026 40.0 11.5 123 314-478 8-131 (272)
112 PTZ00425 asparagine-tRNA ligas 82.4 12 0.00027 44.1 11.9 51 407-472 345-396 (586)
113 cd00496 PheRS_alpha_core Pheny 82.3 31 0.00067 35.3 13.6 111 329-477 16-132 (218)
114 KOG4727|consensus 81.1 1.1 2.3E-05 44.7 2.3 36 53-88 72-107 (193)
115 smart00355 ZnF_C2H2 zinc finge 80.3 1.1 2.3E-05 29.2 1.5 21 57-77 1-21 (26)
116 TIGR03752 conj_TIGR03752 integ 80.2 16 0.00034 42.0 11.4 95 174-269 51-154 (472)
117 PF13870 DUF4201: Domain of un 80.0 29 0.00063 34.3 12.1 45 225-269 100-144 (177)
118 PLN02788 phenylalanine-tRNA sy 79.8 28 0.0006 39.4 13.1 141 331-515 88-245 (402)
119 COG2269 Truncated, possibly in 77.8 2.9 6.4E-05 45.0 4.5 110 313-457 16-126 (322)
120 PF03449 GreA_GreB_N: Transcri 77.5 21 0.00046 30.9 8.9 60 188-247 10-70 (74)
121 PRK02983 lysS lysyl-tRNA synth 77.4 5.1 0.00011 50.6 7.2 116 313-468 771-886 (1094)
122 COG0017 AsnS Aspartyl/asparagi 75.9 9.5 0.0002 43.4 8.1 116 310-468 132-248 (435)
123 KOG0554|consensus 74.7 10 0.00022 42.6 7.7 143 307-492 127-270 (446)
124 PF03962 Mnd1: Mnd1 family; I 73.6 32 0.0007 34.8 10.5 66 180-247 62-127 (188)
125 COG4026 Uncharacterized protei 72.2 42 0.0009 35.2 10.9 55 153-210 102-158 (290)
126 COG0216 PrfA Protein chain rel 72.0 68 0.0015 35.6 13.0 106 156-277 9-117 (363)
127 KOG0555|consensus 71.1 6.9 0.00015 43.9 5.4 107 302-450 229-339 (545)
128 PF13913 zf-C2HC_2: zinc-finge 71.0 2.6 5.6E-05 29.1 1.4 20 58-78 4-23 (25)
129 KOG3454|consensus 70.7 1.5 3.3E-05 43.4 0.3 52 56-107 3-61 (165)
130 KOG2482|consensus 69.7 2 4.3E-05 47.0 0.9 29 55-83 194-222 (423)
131 PRK05892 nucleoside diphosphat 69.6 24 0.00053 34.8 8.4 32 187-218 11-42 (158)
132 PF05529 Bap31: B-cell recepto 69.4 28 0.00062 34.8 9.1 12 166-177 95-106 (192)
133 COG1579 Zn-ribbon protein, pos 69.4 47 0.001 35.1 10.9 29 182-210 54-82 (239)
134 COG3883 Uncharacterized protei 68.6 48 0.001 35.6 10.8 69 182-258 40-108 (265)
135 PHA00616 hypothetical protein 68.2 2.2 4.7E-05 33.7 0.6 22 57-78 2-23 (44)
136 PF12325 TMF_TATA_bd: TATA ele 67.8 72 0.0016 30.3 10.8 33 181-213 24-56 (120)
137 PRK11637 AmiB activator; Provi 66.4 47 0.001 37.4 11.0 27 227-253 100-126 (428)
138 COG1579 Zn-ribbon protein, pos 65.8 42 0.00092 35.5 9.7 67 187-261 89-155 (239)
139 KOG1994|consensus 64.8 3.5 7.6E-05 42.9 1.5 25 54-78 237-261 (268)
140 PRK10884 SH3 domain-containing 64.6 55 0.0012 33.8 10.1 28 180-207 93-120 (206)
141 KOG3032|consensus 64.4 2E+02 0.0043 30.5 14.5 35 54-89 33-67 (264)
142 COG1340 Uncharacterized archae 63.1 75 0.0016 34.6 11.1 66 182-255 22-87 (294)
143 PRK01885 greB transcription el 61.3 36 0.00078 33.5 7.8 32 187-218 10-42 (157)
144 TIGR01461 greB transcription e 60.5 33 0.00071 33.8 7.4 31 188-218 9-40 (156)
145 PF11932 DUF3450: Protein of u 60.2 58 0.0013 34.1 9.6 40 230-269 84-123 (251)
146 PF10146 zf-C4H2: Zinc finger- 59.3 1.1E+02 0.0023 32.2 11.3 27 187-213 32-58 (230)
147 PRK11637 AmiB activator; Provi 57.2 1.1E+02 0.0024 34.5 11.8 30 225-254 105-134 (428)
148 COG0173 AspS Aspartyl-tRNA syn 56.8 54 0.0012 38.6 9.2 226 325-592 153-404 (585)
149 COG3883 Uncharacterized protei 55.5 1.1E+02 0.0023 33.1 10.6 65 182-254 33-97 (265)
150 PF08317 Spc7: Spc7 kinetochor 54.9 94 0.002 33.9 10.5 61 196-256 179-242 (325)
151 TIGR01462 greA transcription e 53.1 55 0.0012 31.8 7.5 31 188-218 6-37 (151)
152 PRK09616 pheT phenylalanyl-tRN 52.8 1.8E+02 0.0038 34.2 12.9 131 318-482 364-495 (552)
153 PRK11546 zraP zinc resistance 52.5 1.8E+02 0.0039 28.6 10.8 75 177-259 44-118 (143)
154 KOG2462|consensus 52.4 7.3 0.00016 41.7 1.4 29 53-81 212-240 (279)
155 KOG2893|consensus 50.9 7.7 0.00017 40.8 1.3 27 58-84 12-38 (341)
156 PF12329 TMF_DNA_bd: TATA elem 50.0 1.7E+02 0.0037 25.3 10.1 64 181-252 6-69 (74)
157 KOG2785|consensus 48.9 8 0.00017 43.1 1.1 38 53-90 65-102 (390)
158 TIGR02894 DNA_bind_RsfA transc 48.4 2.6E+02 0.0057 28.0 11.3 63 176-253 79-141 (161)
159 KOG2837|consensus 47.5 4 8.8E-05 43.5 -1.3 37 56-92 25-61 (309)
160 PF09340 NuA4: Histone acetylt 47.4 40 0.00086 29.7 5.0 40 225-264 4-43 (80)
161 PF03961 DUF342: Protein of un 47.1 1.4E+02 0.003 34.1 10.6 74 183-256 330-408 (451)
162 PF14282 FlxA: FlxA-like prote 45.8 1.3E+02 0.0029 27.6 8.5 58 196-257 21-78 (106)
163 PF13821 DUF4187: Domain of un 44.0 12 0.00026 30.7 1.2 21 56-76 27-47 (55)
164 PF06008 Laminin_I: Laminin Do 43.7 2.3E+02 0.0049 29.8 11.0 91 158-256 21-113 (264)
165 TIGR03752 conj_TIGR03752 integ 43.6 2.1E+02 0.0045 33.3 11.1 71 180-250 73-143 (472)
166 PF11932 DUF3450: Protein of u 42.7 2.7E+02 0.0058 29.1 11.2 68 180-255 49-116 (251)
167 TIGR00020 prfB peptide chain r 42.7 2.2E+02 0.0049 32.0 11.1 57 149-205 18-74 (364)
168 PRK06253 O-phosphoseryl-tRNA s 42.5 53 0.0011 38.5 6.4 96 401-517 204-302 (529)
169 KOG0804|consensus 42.0 2.4E+02 0.0052 32.6 11.1 35 228-262 419-453 (493)
170 PRK00578 prfB peptide chain re 41.9 2.3E+02 0.0051 31.9 11.1 57 148-204 17-73 (367)
171 TIGR02231 conserved hypothetic 41.2 1.9E+02 0.0042 33.5 10.8 36 179-214 70-105 (525)
172 PF00435 Spectrin: Spectrin re 41.1 2.2E+02 0.0047 23.9 12.2 51 163-213 17-67 (105)
173 KOG4167|consensus 41.0 9.9 0.00022 45.5 0.4 31 54-84 790-820 (907)
174 PF01920 Prefoldin_2: Prefoldi 40.8 2.5E+02 0.0055 24.7 11.5 76 180-255 5-94 (106)
175 TIGR00469 pheS_mito phenylalan 39.3 6.8E+02 0.015 29.2 14.9 71 331-418 67-146 (460)
176 KOG2629|consensus 39.0 3.3E+02 0.0072 29.8 11.2 84 181-272 123-206 (300)
177 PF14257 DUF4349: Domain of un 39.0 1.7E+02 0.0037 30.7 9.1 61 187-253 132-192 (262)
178 PF10498 IFT57: Intra-flagella 39.0 1.9E+02 0.0042 32.3 9.9 29 182-210 268-296 (359)
179 PF10805 DUF2730: Protein of u 37.9 2.9E+02 0.0064 25.4 9.4 35 222-256 64-98 (106)
180 PF07535 zf-DBF: DBF zinc fing 37.7 17 0.00038 29.3 1.1 25 58-85 7-31 (49)
181 COG2024 Phenylalanyl-tRNA synt 36.7 12 0.00026 41.9 0.1 105 397-526 199-316 (536)
182 PF13909 zf-H2C2_5: C2H2-type 36.4 23 0.0005 23.4 1.4 21 57-78 1-21 (24)
183 KOG4603|consensus 36.3 3.6E+02 0.0079 27.5 10.2 63 181-249 80-142 (201)
184 PF05529 Bap31: B-cell recepto 35.5 1.8E+02 0.0039 29.1 8.3 23 230-252 161-183 (192)
185 PF07889 DUF1664: Protein of u 35.4 2.9E+02 0.0063 26.6 9.1 24 230-253 96-119 (126)
186 KOG0250|consensus 35.2 2.2E+02 0.0047 36.2 10.2 29 185-213 356-384 (1074)
187 PF13851 GAS: Growth-arrest sp 35.1 4.8E+02 0.011 26.7 11.4 32 182-213 50-81 (201)
188 KOG2298|consensus 35.1 7.3 0.00016 44.6 -1.8 74 379-465 183-257 (599)
189 PRK00591 prfA peptide chain re 34.8 6.7E+02 0.014 28.3 13.2 97 159-266 11-109 (359)
190 PF13119 DUF3973: Domain of un 34.6 13 0.00028 28.7 -0.0 9 56-64 1-9 (41)
191 PF04111 APG6: Autophagy prote 34.3 3.6E+02 0.0078 29.5 10.9 34 180-213 50-83 (314)
192 KOG2384|consensus 33.9 21 0.00045 36.8 1.3 67 46-118 74-160 (223)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 33.7 3.9E+02 0.0084 25.3 9.8 62 179-251 58-119 (132)
194 PF13805 Pil1: Eisosome compon 33.7 5.3E+02 0.011 28.0 11.7 28 188-215 132-159 (271)
195 KOG3052|consensus 33.4 23 0.00051 37.6 1.6 46 635-680 122-168 (311)
196 PRK09335 30S ribosomal protein 33.4 17 0.00036 33.3 0.5 14 54-67 65-78 (95)
197 PF12718 Tropomyosin_1: Tropom 33.3 4.6E+02 0.01 25.4 10.7 68 182-254 30-97 (143)
198 COG4942 Membrane-bound metallo 33.3 3.7E+02 0.0079 30.9 10.9 33 180-212 52-84 (420)
199 PHA02562 46 endonuclease subun 33.2 3.2E+02 0.0069 31.5 10.9 71 186-256 173-246 (562)
200 COG3705 HisZ ATP phosphoribosy 32.9 1.1E+02 0.0024 34.6 6.9 136 307-479 13-151 (390)
201 PHA02562 46 endonuclease subun 32.9 2.6E+02 0.0056 32.2 10.2 25 180-204 299-323 (562)
202 PRK13182 racA polar chromosome 32.7 5.3E+02 0.012 26.0 11.1 20 231-250 126-145 (175)
203 KOG0995|consensus 32.2 9.1E+02 0.02 28.9 14.0 55 156-212 310-364 (581)
204 PF08317 Spc7: Spc7 kinetochor 31.9 3.1E+02 0.0066 30.0 10.0 22 230-251 237-258 (325)
205 PF08614 ATG16: Autophagy prot 31.8 3.1E+02 0.0068 27.6 9.4 25 228-252 149-173 (194)
206 PF07106 TBPIP: Tat binding pr 31.6 1.7E+02 0.0036 28.8 7.2 29 228-256 77-105 (169)
207 PF00038 Filament: Intermediat 31.5 5.3E+02 0.011 27.4 11.6 34 180-213 216-249 (312)
208 PF05278 PEARLI-4: Arabidopsis 31.4 6.9E+02 0.015 27.1 12.1 16 92-107 57-72 (269)
209 PF05266 DUF724: Protein of un 30.9 4.4E+02 0.0095 26.9 10.2 39 163-201 74-117 (190)
210 cd00769 PheRS_beta_core Phenyl 30.9 4E+02 0.0086 26.6 9.9 119 329-479 15-140 (198)
211 KOG1936|consensus 30.8 2E+02 0.0044 33.2 8.3 129 315-479 77-209 (518)
212 PF14662 CCDC155: Coiled-coil 30.8 3.9E+02 0.0084 27.6 9.6 25 228-252 86-110 (193)
213 PF04420 CHD5: CHD5-like prote 30.7 1.3E+02 0.0028 29.7 6.2 24 184-207 37-60 (161)
214 PF10146 zf-C4H2: Zinc finger- 30.1 4.5E+02 0.0097 27.7 10.4 61 181-249 40-100 (230)
215 PF07889 DUF1664: Protein of u 30.1 5.1E+02 0.011 24.9 10.0 18 196-213 56-73 (126)
216 PRK13729 conjugal transfer pil 29.9 3.1E+02 0.0068 31.9 9.8 21 233-253 100-120 (475)
217 smart00787 Spc7 Spc7 kinetocho 29.9 3.9E+02 0.0084 29.4 10.3 30 224-253 205-234 (312)
218 KOG2264|consensus 29.8 3.6E+02 0.0077 32.2 10.2 55 195-257 94-148 (907)
219 KOG0250|consensus 29.8 1.3E+03 0.029 29.7 15.6 70 487-567 957-1034(1074)
220 PHA00732 hypothetical protein 29.7 32 0.00069 30.2 1.6 22 57-78 2-23 (79)
221 PRK10884 SH3 domain-containing 29.6 5.1E+02 0.011 26.8 10.5 28 225-252 141-168 (206)
222 PRK11415 hypothetical protein; 29.2 3.3E+02 0.0071 23.6 7.7 40 202-241 25-64 (74)
223 PRK00226 greA transcription el 28.9 2.3E+02 0.005 27.6 7.6 32 187-218 10-42 (157)
224 COG5185 HEC1 Protein involved 28.8 4.7E+02 0.01 30.6 10.7 55 155-211 345-399 (622)
225 PF04325 DUF465: Protein of un 28.8 2.9E+02 0.0063 21.8 6.8 21 223-243 27-47 (49)
226 smart00586 ZnF_DBF Zinc finger 28.2 27 0.00058 28.3 0.8 25 58-85 7-31 (49)
227 cd00632 Prefoldin_beta Prefold 28.1 4.5E+02 0.0098 23.7 11.6 28 229-256 69-96 (105)
228 PF11781 RRN7: RNA polymerase 27.9 25 0.00054 26.5 0.5 12 52-63 21-32 (36)
229 KOG2391|consensus 27.7 5.4E+02 0.012 28.9 10.7 44 225-268 248-291 (365)
230 TIGR01554 major_cap_HK97 phage 27.7 2.2E+02 0.0047 31.5 8.1 30 562-591 251-280 (378)
231 KOG1656|consensus 27.5 3.5E+02 0.0076 28.2 8.7 30 176-212 120-149 (221)
232 TIGR03185 DNA_S_dndD DNA sulfu 27.2 2.9E+02 0.0063 33.0 9.5 28 230-257 262-289 (650)
233 PF10158 LOH1CR12: Tumour supp 26.9 2.5E+02 0.0054 27.1 7.2 37 177-213 24-61 (131)
234 PF04156 IncA: IncA protein; 26.8 6.2E+02 0.014 24.9 10.9 31 181-211 82-112 (191)
235 PTZ00172 40S ribosomal protein 26.8 25 0.00055 32.8 0.5 14 54-67 69-82 (108)
236 PHA00733 hypothetical protein 26.3 37 0.00079 32.3 1.5 22 56-77 73-94 (128)
237 COG3634 AhpF Alkyl hydroperoxi 26.1 30 0.00065 38.8 1.0 32 597-638 320-351 (520)
238 PF07334 IFP_35_N: Interferon- 25.7 1.3E+02 0.0028 26.6 4.6 26 227-252 4-29 (76)
239 TIGR01843 type_I_hlyD type I s 25.4 4E+02 0.0087 29.1 9.6 13 461-473 408-420 (423)
240 PF06810 Phage_GP20: Phage min 25.1 5E+02 0.011 25.6 9.2 71 179-257 4-78 (155)
241 PHA00733 hypothetical protein 24.9 44 0.00095 31.8 1.7 24 56-79 99-122 (128)
242 COG2841 Uncharacterized protei 24.8 4.6E+02 0.01 23.0 7.6 44 198-241 21-64 (72)
243 TIGR02338 gimC_beta prefoldin, 24.8 5.4E+02 0.012 23.5 11.5 27 187-213 17-43 (110)
244 PF07851 TMPIT: TMPIT-like pro 24.7 7.5E+02 0.016 27.6 11.3 24 459-483 216-239 (330)
245 cd03029 GRX_hybridPRX5 Glutare 24.6 1.4E+02 0.0031 24.4 4.6 37 444-489 1-37 (72)
246 smart00150 SPEC Spectrin repea 24.5 4.2E+02 0.009 22.1 12.4 49 167-215 18-66 (101)
247 PF06005 DUF904: Protein of un 24.4 4.7E+02 0.01 22.7 10.2 67 186-260 3-69 (72)
248 KOG4674|consensus 24.4 6E+02 0.013 34.4 11.9 35 223-257 1307-1341(1822)
249 PF10211 Ax_dynein_light: Axon 24.4 1.5E+02 0.0033 30.0 5.6 23 231-253 164-186 (189)
250 KOG1074|consensus 24.2 40 0.00087 41.2 1.6 31 50-80 873-903 (958)
251 TIGR03185 DNA_S_dndD DNA sulfu 24.1 5.2E+02 0.011 30.9 10.8 26 224-249 422-447 (650)
252 PF07851 TMPIT: TMPIT-like pro 24.1 3.4E+02 0.0074 30.2 8.5 10 341-350 167-176 (330)
253 cd04776 HTH_GnyR Helix-Turn-He 23.8 4.6E+02 0.0099 24.4 8.3 25 164-188 43-67 (118)
254 smart00787 Spc7 Spc7 kinetocho 23.7 5.3E+02 0.012 28.3 9.9 23 183-205 175-197 (312)
255 PF06632 XRCC4: DNA double-str 23.6 3.7E+02 0.0079 30.0 8.7 39 179-217 136-174 (342)
256 TIGR00019 prfA peptide chain r 23.6 1.1E+03 0.024 26.6 13.1 97 158-265 11-108 (360)
257 KOG0933|consensus 23.6 4.2E+02 0.009 33.7 9.7 42 225-266 817-858 (1174)
258 KOG1074|consensus 23.6 32 0.00069 42.0 0.7 25 54-78 351-375 (958)
259 PF10211 Ax_dynein_light: Axon 23.6 4.6E+02 0.01 26.6 8.9 20 181-200 85-104 (189)
260 KOG3993|consensus 23.5 37 0.0008 38.6 1.0 34 49-84 278-321 (500)
261 PF04111 APG6: Autophagy prote 23.4 4.9E+02 0.011 28.5 9.6 24 460-483 247-271 (314)
262 PF03962 Mnd1: Mnd1 family; I 23.3 7.9E+02 0.017 24.9 10.5 49 187-239 103-151 (188)
263 PF03233 Cauli_AT: Aphid trans 23.3 3.4E+02 0.0074 27.3 7.5 23 233-255 138-160 (163)
264 PF12756 zf-C2H2_2: C2H2 type 23.1 28 0.0006 29.9 0.0 25 59-84 2-26 (100)
265 PF07200 Mod_r: Modifier of ru 22.7 6.7E+02 0.015 23.9 10.6 16 154-169 7-22 (150)
266 PLN00186 ribosomal protein S26 22.6 34 0.00074 32.0 0.5 19 49-67 62-82 (109)
267 PRK13694 hypothetical protein; 22.5 5.8E+02 0.013 23.0 8.4 30 185-214 10-39 (83)
268 PRK14720 transcript cleavage f 22.3 2.9E+02 0.0062 34.8 8.3 58 187-244 755-813 (906)
269 COG3914 Spy Predicted O-linked 22.0 37 0.00081 40.0 0.8 56 410-476 264-320 (620)
270 PF14197 Cep57_CLD_2: Centroso 21.9 5.2E+02 0.011 22.2 8.0 24 189-212 21-44 (69)
271 PF07200 Mod_r: Modifier of ru 21.8 5.4E+02 0.012 24.5 8.6 32 225-256 57-88 (150)
272 PF06419 COG6: Conserved oligo 21.8 3.8E+02 0.0083 32.0 9.1 78 164-249 19-99 (618)
273 PRK01156 chromosome segregatio 21.8 3.4E+02 0.0073 33.5 8.9 14 635-648 832-845 (895)
274 PF10168 Nup88: Nuclear pore c 21.8 6E+02 0.013 31.2 10.7 15 55-69 379-394 (717)
275 TIGR01834 PHA_synth_III_E poly 21.7 5.3E+02 0.011 28.7 9.3 29 223-251 289-317 (320)
276 PF05667 DUF812: Protein of un 21.0 7.2E+02 0.016 29.8 11.0 60 203-263 421-483 (594)
277 KOG0150|consensus 21.0 45 0.00097 36.5 1.1 30 54-83 8-38 (336)
278 KOG0972|consensus 20.9 6.2E+02 0.013 27.9 9.4 24 181-204 274-297 (384)
279 PRK09039 hypothetical protein; 20.8 5.5E+02 0.012 28.5 9.4 21 191-211 141-161 (343)
280 PF06160 EzrA: Septation ring 20.8 8.1E+02 0.017 29.0 11.3 16 307-323 491-506 (560)
281 PTZ00448 hypothetical protein; 20.6 1E+02 0.0022 34.7 3.6 49 55-103 313-363 (373)
282 cd03418 GRX_GRXb_1_3_like Glut 20.6 1.6E+02 0.0036 23.9 4.2 33 445-486 1-33 (75)
283 COG4942 Membrane-bound metallo 20.5 1.1E+03 0.023 27.3 11.6 9 307-315 236-244 (420)
284 PF14662 CCDC155: Coiled-coil 20.0 8.1E+02 0.018 25.4 9.6 22 189-210 83-104 (193)
No 1
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-95 Score=786.54 Aligned_cols=381 Identities=19% Similarity=0.239 Sum_probs=348.7
Q ss_pred ccchHHhhcCHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q psy10095 153 SYDVKHVLENEDLIVNQLKQRRI-DISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLE 231 (680)
Q Consensus 153 mLD~k~i~~n~e~v~~~l~~R~~-~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~ 231 (680)
|+|+++||+|+|.|++++.+|+. ..++|.+++++.++|+++.+.+.|+++||++|++|++.++.+.+ +.+.++++
T Consensus 1 mld~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~----~~~~l~~e 76 (429)
T COG0172 1 MLDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED----DAEELIAE 76 (429)
T ss_pred CchHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch----hHHHHHHH
Confidence 89999999999999999999974 45689999999999999999999999999999999966544322 46789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC----CCeeEE-e-CC-----CCCCCChhhhhhcCCccccc
Q psy10095 232 RKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEV----YETIYE-Y-DP-----DREGKNKIDMDALSKYVQYT 300 (680)
Q Consensus 232 ~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~----~n~vv~-~-~p-----~~~~~~H~elg~~l~l~D~~ 300 (680)
++.++++++.++.++++++.++..+++.|||++|++||.+ +|++++ + .| .|.|++|++||+.+|++||+
T Consensus 77 ~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~ 156 (429)
T COG0172 77 VKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFE 156 (429)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecCccccccCCcchHHHHhhhcCcchhh
Confidence 9999999999999999999999999999999999999943 578877 3 33 45789999999999999996
Q ss_pred ------CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccc
Q psy10095 301 ------NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGY 374 (680)
Q Consensus 301 ------~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~ 374 (680)
|+|||||+|.||+|++||+|||+|.|. ++||+++.||+|||.++|.||||+|+|.+++|++.+
T Consensus 157 ~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~-~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~---------- 225 (429)
T COG0172 157 RAAKVSGSRFYFYKGKGARLERALIQFMLDLHT-KHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVED---------- 225 (429)
T ss_pred hhcccCCCceEEEcCHHHHHHHHHHHHHHHHHH-HcCceEeeCceeecHHHhhccCCCCCCcccceEecC----------
Confidence 789999999999999999999999987 789999999999999999999999999999999983
Q ss_pred cCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCC
Q psy10095 375 EERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNN 454 (680)
Q Consensus 375 ~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~ 454 (680)
.++||||||| +||+|||+|++|+.++||+||+| |++ |||+||||+|+|||||+|||||+|||||+|| +
T Consensus 226 --~~~~LipTaE-vpl~~l~~~Eil~~~~LP~k~~~----~S~----cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~-~ 293 (429)
T COG0172 226 --PDLYLIPTAE-VPLTNLHRDEILDEEDLPIKYTA----YSP----CFRSEAGSAGKDTRGLIRVHQFDKVELVVIT-K 293 (429)
T ss_pred --CCEEEEecch-hhhHHhhcccccccccCCeeeEE----ECh----hhhcccccccccccceeeeeeeeeEEEEEEe-C
Confidence 3799999997 99999999999999999999999 666 7777899999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhhHHHHHHHHHHH
Q psy10095 455 HENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIVFFIQEMSWM 534 (680)
Q Consensus 455 pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q~~~~~~e~~~~ 534 (680)
||+|+.+||+|+++|++|++.|+||||||.+|||||||+|++|||||||||++++|+||||||||+++|
T Consensus 294 Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQ----------- 362 (429)
T COG0172 294 PEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQ----------- 362 (429)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccCCCCcccchHHHHHHHHHHhhhcC-Cc-ccchhhhhhchhHHHHHHHHhhhcc
Q psy10095 535 KKLAEKIIPNIDENIGMEYMSFLKRTADRLCMKWNR-SY-AQVLGWLRTKCQISIIRTISMRIRG 597 (680)
Q Consensus 535 ~k~~~~l~~s~dG~~g~e~~~F~krLA~~Ls~Kw~~-~y-s~~i~wir~~~sfailr~~~~c~~g 597 (680)
|.|+-++|+. .. +..+-++.+....|+.|+...=+-+
T Consensus 363 --------------------------aRR~~~Ryr~~~~~k~~~vhTLNGsglA~~R~l~AilEN 401 (429)
T COG0172 363 --------------------------ARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILEN 401 (429)
T ss_pred --------------------------HHHHhcccccccCCCcEEEEeccchHHHHHHHHHHHHHc
Confidence 7888888854 34 4456777888888999987766554
No 2
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=2.3e-92 Score=779.94 Aligned_cols=349 Identities=12% Similarity=0.144 Sum_probs=320.6
Q ss_pred cccCCCCccchHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Q psy10095 146 LCSNVSPSYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQL 225 (680)
Q Consensus 146 ~~~~~~PmLD~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~ 225 (680)
....|+||||+++||+|+|.|+++|++|++++++|+|+++|+++|+++.++++|+++||++|++|++ +..+ ++.
T Consensus 59 ~~~~~~~mlD~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~-----~~~ 132 (502)
T PLN02320 59 ARPQWKAAIDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEP-----SER 132 (502)
T ss_pred cccccccccCHHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCC-----CCH
Confidence 3456899999999999999999999999988889999999999999999999999999999999987 2221 357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC---CCeeEE-e--CCC--CCCCChhhhhhcCCcc
Q psy10095 226 EKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEV---YETIYE-Y--DPD--REGKNKIDMDALSKYV 297 (680)
Q Consensus 226 e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~---~n~vv~-~--~p~--~~~~~H~elg~~l~l~ 297 (680)
+++++++++|+++|+.|++++.++++++..+++.|||++||+||.+ ++++++ + .|. |++++|++||++||||
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~de~~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lf 212 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGEDSSAVRKEVGSPREFSFPIKDHLQLGKELDLF 212 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCeEEEecCCCCCCCCCCcCHHHHHHHcCCc
Confidence 8899999999999999999999999999999999999999999953 345665 3 343 5789999999999999
Q ss_pred ccc------CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCC-CceEeecCCCccc
Q psy10095 298 QYT------NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPH-DNMVLVNNENDLS 370 (680)
Q Consensus 298 D~~------~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~-~~~~i~~~~~~~~ 370 (680)
||+ |++||||+|.||+||+||++||+|.+.. +||++|+||+||+.++++||||+|++++ +.|.++
T Consensus 213 df~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~-~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie------- 284 (502)
T PLN02320 213 DFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMK-KGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID------- 284 (502)
T ss_pred cccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHH-cCCEEEECCccchHHHHHhcCCCcccccCceeEEC-------
Confidence 995 6899999999999999999999998865 6999999999999999999999999988 456554
Q ss_pred cccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE
Q psy10095 371 EIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV 450 (680)
Q Consensus 371 ~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~ 450 (680)
++++||||||| +||+|+|+++++..++||+||+++|+|||. ||||+|+|++||||||||+|||||+
T Consensus 285 -----~ed~~Li~TaE-~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~--------EAgs~G~d~rGL~RvhQF~KvE~~i 350 (502)
T PLN02320 285 -----GSDQCLIGTAE-IPVGGIHMDSILLESALPLKYVAFSHCFRT--------EAGAAGAATRGLYRVHQFSKVEMFV 350 (502)
T ss_pred -----CCceEEeeccc-ccccccccccccCHhhCCceeEEecccccc--------ccccCCCcCCCceeeeeeecccEEE
Confidence 24689999997 999999999999999999999995555555 5799999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 451 GTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 451 ~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
|| .||+|+++|++|++++++||+.||||||||+|||||||++|++||||||||||+++|+||||||||+++|
T Consensus 351 f~-~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQ 422 (502)
T PLN02320 351 IC-RPEESESFHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQ 422 (502)
T ss_pred EE-CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHh
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=5.5e-90 Score=756.55 Aligned_cols=345 Identities=13% Similarity=0.181 Sum_probs=317.9
Q ss_pred ccchHHhh----cCHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy10095 153 SYDVKHVL----ENEDLIVNQLKQRRIDIS-EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEK 227 (680)
Q Consensus 153 mLD~k~i~----~n~e~v~~~l~~R~~~~d-ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~ 227 (680)
|||+++|| +|+|.|+++|++|+++.+ +|+|+++|++||+++.+++.|+++||++|++|+.++.++ ++.++
T Consensus 1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-----~~~~~ 75 (448)
T PLN02678 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-----EDATE 75 (448)
T ss_pred CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CcHHH
Confidence 89999999 699999999999998766 799999999999999999999999999999999865433 24678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC----CCeeEE-e--CCCC-CCCChhhhhhcCCcccc
Q psy10095 228 KYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEV----YETIYE-Y--DPDR-EGKNKIDMDALSKYVQY 299 (680)
Q Consensus 228 l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~----~n~vv~-~--~p~~-~~~~H~elg~~l~l~D~ 299 (680)
+++++++|+++|+.+++++.++++++..+++.|||++||+||.+ +|++++ + .+.+ ++++|++||+++++|||
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~ 155 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDT 155 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcCCCCCCCCCCHHHHHhhccCccc
Confidence 99999999999999999999999999999999999999999953 356666 3 3333 57999999999999999
Q ss_pred c------CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCcccccc
Q psy10095 300 T------NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIG 373 (680)
Q Consensus 300 ~------~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~ 373 (680)
+ |++||||+|+||+|++||++|++|.+.. +||++|+||+||+.+++++||++|+|.+++|.+..
T Consensus 156 ~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~-~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~--------- 225 (448)
T PLN02678 156 ERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRK-RGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTG--------- 225 (448)
T ss_pred hhhhhhcCceeEEECCHHHHHHHHHHHHHHHHHHH-cCCEEEECcccccHHHHhhcCCcccchhcCceecC---------
Confidence 7 6899999999999999999999998865 69999999999999999999999999999998863
Q ss_pred ccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecC
Q psy10095 374 YEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTN 453 (680)
Q Consensus 374 ~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~ 453 (680)
.++++||+|||| +|+|++|+++++..++|||||+++|+|| |+||||+|+|++||||||||+|||||++|
T Consensus 226 -~~~~~yLi~TaE-~~l~~~h~~~~~s~~eLPlr~~~~s~cf--------R~Eags~G~~~~GL~RvhqF~KvE~f~~~- 294 (448)
T PLN02678 226 -EGDDKYLIATSE-QPLCAYHRGDWIDPKELPIRYAGYSTCF--------RKEAGSHGRDTLGIFRVHQFEKVEQFCIT- 294 (448)
T ss_pred -CCCceeeecccc-cccChHHhcccCCHHhCCceeEEecccc--------ccccccCCCcCCcceEEEEEEEEEEEEEE-
Confidence 124689999997 9999999999999999999999955555 55679999999999999999999999999
Q ss_pred ChhH--HHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 454 NHEN--LCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 454 ~pe~--S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
.|++ |+++||+|++++++||++||||||||+|||||||+++++||||||||||++.|+||||||||+++|
T Consensus 295 ~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~Q 366 (448)
T PLN02678 295 SPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQ 366 (448)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHh
Confidence 8998 999999999999999999999999999999999999999999999999999999999999999999
No 4
>KOG2509|consensus
Probab=100.00 E-value=3.1e-90 Score=736.80 Aligned_cols=350 Identities=18% Similarity=0.227 Sum_probs=307.3
Q ss_pred CccchHHhhc----CHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhH-
Q psy10095 152 PSYDVKHVLE----NEDLIVNQLKQRRIDIS-EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQL- 225 (680)
Q Consensus 152 PmLD~k~i~~----n~e~v~~~l~~R~~~~d-ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~- 225 (680)
+|||++.++. ||+.+++..+.|.-+.. +++++++|.+|++...++++|+.+.|.+++.|+.++..+... ..+.
T Consensus 1 ~~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~~~k~kkke~-~~~l~ 79 (455)
T KOG2509|consen 1 QMLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIGDLKLKKKED-IGQLE 79 (455)
T ss_pred CccccccccccCCCChHHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhhHhhHHHHhhcch-hhHHH
Confidence 5888888764 89999999998887654 599999999999999999999999999999999533221111 1111
Q ss_pred ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC----CeeEE-eCC-CC--CCCChhhhhh
Q psy10095 226 ---EK--KYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVY----ETIYE-YDP-DR--EGKNKIDMDA 292 (680)
Q Consensus 226 ---e~--l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~~----n~vv~-~~p-~~--~~~~H~elg~ 292 (680)
.+ ..++++.|+++..++++...+++++++..+..|||++||+||.+. |++.+ +.| .+ ....|.+|+.
T Consensus 80 ~~~~~~~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ipN~~hpsVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~ 159 (455)
T KOG2509|consen 80 ESKAKNTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVR 159 (455)
T ss_pred HhhhHhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCchhhhhHHHHhcCCcccccccccHHHHHH
Confidence 11 124678889999999999999999999999999999999999542 34444 333 23 4468899999
Q ss_pred cCCccccc------CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCC
Q psy10095 293 LSKYVQYT------NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNE 366 (680)
Q Consensus 293 ~l~l~D~~------~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~ 366 (680)
.+|++|++ |+|||||+|+||+||+||||||++.+. ++||+|++||+|||++||++|||+|+|.+++||..+
T Consensus 160 ~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~-~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld-- 236 (455)
T KOG2509|consen 160 ALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLN-AKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLD-- 236 (455)
T ss_pred hcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHH-HcCCccccCchhhhHHHHHHhccCcCCCcceEEeec--
Confidence 99998886 689999999999999999999998765 579999999999999999999999999999999874
Q ss_pred CccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceE
Q psy10095 367 NDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKV 446 (680)
Q Consensus 367 ~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KV 446 (680)
+.++.||||||| +||+|||+|++|.+++||+||||+|+|||+ ||||||+|++||||||||+||
T Consensus 237 --------~~~~~~LiaTaE-~plAa~~~~e~~~~~~lPiK~vg~S~CfR~--------EaGs~G~d~~GlyRVHqF~KV 299 (455)
T KOG2509|consen 237 --------GGDEKYLIATAE-QPLAAYHRDEWLEEDQLPIKYVGVSRCFRA--------EAGSHGKDTKGLYRVHQFEKV 299 (455)
T ss_pred --------CCccceeEeecc-chhhhhhcccccccccCceeeeehhHHHHH--------Hhhhcccccccceeeeeeeee
Confidence 235789999997 999999999999999999999997776666 579999999999999999999
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 447 NLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 447 E~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
|||++| .||+||++||||++++++||++||||||||+|||+|||++|++||||||||||++.||||||||||++||
T Consensus 300 E~Fvit-~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQ 375 (455)
T KOG2509|consen 300 EQFVIT-GPEDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQ 375 (455)
T ss_pred EEEEec-CcchhHHHHHHHHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999
No 5
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-80 Score=681.21 Aligned_cols=344 Identities=18% Similarity=0.195 Sum_probs=319.3
Q ss_pred ccchHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q psy10095 153 SYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLER 232 (680)
Q Consensus 153 mLD~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~ 232 (680)
|||+++||+|++.|++++++|+++.++|.|+++|++||+++.++++|+++||++|++|+.+++++ ++.+++++++
T Consensus 1 MlD~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~-----~~~~~l~~~~ 75 (425)
T PRK05431 1 MLDIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKG-----EDAEALIAEV 75 (425)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHH
Confidence 89999999999999999999998778999999999999999999999999999999999864432 2467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC----CCeeEE-e--CC--CCCCCChhhhhhcCCccccc---
Q psy10095 233 KQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEV----YETIYE-Y--DP--DREGKNKIDMDALSKYVQYT--- 300 (680)
Q Consensus 233 k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~----~n~vv~-~--~p--~~~~~~H~elg~~l~l~D~~--- 300 (680)
++|+++|+++++++.++++++...++.|||++||+||.+ +|++++ + .| .|++++|++||++++|+||+
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~ 155 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAA 155 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCCCCCCCCCCCCHHHHHhhcCceeccccc
Confidence 999999999999999999999999999999999999953 456776 4 23 35789999999999999985
Q ss_pred ---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCC
Q psy10095 301 ---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEER 377 (680)
Q Consensus 301 ---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~ 377 (680)
|++||||+|.||+|++||++|++|.+..+.||++|++|+||+.+++++||++|+|.+++|.+.+ +
T Consensus 156 ~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~------------~ 223 (425)
T PRK05431 156 KVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED------------D 223 (425)
T ss_pred ccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC------------C
Confidence 6899999999999999999999998874689999999999999999999999999999998862 3
Q ss_pred CceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhH
Q psy10095 378 RNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHEN 457 (680)
Q Consensus 378 ~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~ 457 (680)
++||+||+| +|++++|+++++..++||+||+++|+|||. |+|++|++++||||||||+|||+|+|| +||+
T Consensus 224 ~~~L~pTsE-~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~--------Eag~~g~~~~GL~Rv~qF~k~E~~~f~-~~e~ 293 (425)
T PRK05431 224 DLYLIPTAE-VPLTNLHRDEILDEEELPLKYTAYSPCFRS--------EAGSAGRDTRGLIRVHQFDKVELVKFT-KPED 293 (425)
T ss_pred CEEEEeCCc-HHHHHHHhcccCCHHhCCeeEEEEcCEecC--------CCCcCCCCCCceeeeeeeeeeeEEEEE-CHHH
Confidence 689999997 899999999999999999999997666655 579999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 458 LCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 458 S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
|+++|++|++++++||+.||||||||.+|++|||++++++|||||||||++.|+||+|||||+++|
T Consensus 294 s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~q 359 (425)
T PRK05431 294 SYAELEELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQ 359 (425)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999888
No 6
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=1.2e-78 Score=665.05 Aligned_cols=343 Identities=18% Similarity=0.199 Sum_probs=316.7
Q ss_pred ccchHHhhcCHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhh-HHHHH
Q psy10095 153 SYDVKHVLENEDLIVNQLKQRRIDIS--EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQ-LEKKY 229 (680)
Q Consensus 153 mLD~k~i~~n~e~v~~~l~~R~~~~d--ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e-~e~l~ 229 (680)
|||+++||+|+|.|++++++|+++.+ +|+|+.+|+++|+++.++++|+++||++|++|+++++.+ ++ .++++
T Consensus 1 MlDik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-----~~~~~~l~ 75 (418)
T TIGR00414 1 MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-----KDKIEEIK 75 (418)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cchHHHHH
Confidence 89999999999999999999998654 799999999999999999999999999999999864332 23 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC----CCeeEE-e--CCC--CCCCChhhhhhcCCcccc-
Q psy10095 230 LERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEV----YETIYE-Y--DPD--REGKNKIDMDALSKYVQY- 299 (680)
Q Consensus 230 ~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~----~n~vv~-~--~p~--~~~~~H~elg~~l~l~D~- 299 (680)
+++++|+++|+++++++.++++++...++.|||++||+||.+ +|++++ + .|. |++++|++||+++||+||
T Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~ 155 (418)
T TIGR00414 76 KELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFD 155 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999953 467666 3 343 478999999999999998
Q ss_pred -----cCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccc
Q psy10095 300 -----TNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGY 374 (680)
Q Consensus 300 -----~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~ 374 (680)
.|++||||+|.||+|++||++|+++.+. +.||++|++|+||+.+++++||++|.|.+++|.+.+
T Consensus 156 ~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~-~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~---------- 224 (418)
T TIGR00414 156 RAVKVTGSRFYYLKNDGAKLERALINFMLDLLE-KNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED---------- 224 (418)
T ss_pred ccccCCCCCeeeeccHHHHHHHHHHHHHHHHHH-HcCCEEEeCCccccHHHHhhcCccccccccceEecC----------
Confidence 4789999999999999999999999886 469999999999999999999999999999998852
Q ss_pred cCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCC
Q psy10095 375 EERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNN 454 (680)
Q Consensus 375 ~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~ 454 (680)
+++||+||+| +|++++|+++++..++||++|+++|+|||. |+|++|++|+||||||||+|||+|++| +
T Consensus 225 --~~~~L~pTsE-~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~--------E~g~~G~~t~GL~Rv~qF~k~E~~~f~-~ 292 (418)
T TIGR00414 225 --TDLYLIPTAE-VPLTNLHRNEILEEEELPIKYTAHSPCFRS--------EAGSYGKDTKGLIRVHQFNKVELVKFC-K 292 (418)
T ss_pred --CCEEEEeCCc-HHHHHHHhCcCCChHhCCeeEEEEcccccC--------CCCccCCCCCccccccceeeeeEEEEc-C
Confidence 3589999997 999999999999999999999996665555 579999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 455 HENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 455 pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
|++|+++|++|++++++||+.||||||+|.+|++|||++++++||||||||+++.|+||+|||||+++|
T Consensus 293 ~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~q 361 (418)
T TIGR00414 293 PEESAEELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQ 361 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988
No 7
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=3.4e-49 Score=415.48 Aligned_cols=229 Identities=17% Similarity=0.216 Sum_probs=211.0
Q ss_pred CeeEE-e--CCC--CCCCChhhhhhcCCccccc------CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCccc
Q psy10095 273 ETIYE-Y--DPD--REGKNKIDMDALSKYVQYT------NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLC 341 (680)
Q Consensus 273 n~vv~-~--~p~--~~~~~H~elg~~l~l~D~~------~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~V 341 (680)
|++++ + .|. +++++|++||++++|+||. |++|||+++.||+|++||++|+.+.+. +.||++|.+|+|+
T Consensus 2 ~~~~~~~g~~~~~~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~-~~G~~ev~~P~l~ 80 (297)
T cd00770 2 NVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLT-KRGFTPVIPPFLV 80 (297)
T ss_pred ceEEEEECCCCCCCCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHH-HCCCEEEECcccc
Confidence 45555 3 333 4789999999999999984 688999999999999999999999885 5799999999999
Q ss_pred chHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccc
Q psy10095 342 KGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLL 421 (680)
Q Consensus 342 r~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~ 421 (680)
+.+++++||+.|.+.+++|.+.+ ++++|+||+| ++++++|+++++...+||+|++.+|+|||.|
T Consensus 81 ~~~l~~~sg~~~~~~~~~f~v~~------------~~~~L~pt~e-~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E--- 144 (297)
T cd00770 81 RKEVMEGTGQLPKFDEQLYKVEG------------EDLYLIATAE-VPLAALHRDEILEEEELPLKYAGYSPCFRKE--- 144 (297)
T ss_pred cHHHHhhcCcCccChhcccEecC------------CCEEEeecCC-HHHHHHHhcccCCHhhCCchheecChhHhCc---
Confidence 99999999999999998888852 4689999997 8999999999999999999999977766665
Q ss_pred cccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeee
Q psy10095 422 CENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQ 501 (680)
Q Consensus 422 CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIE 501 (680)
++++|.+++||+|+|||+|+|++++| .|++|.+++++|++.+++||+.||||||++.+|++|||++++++||||
T Consensus 145 -----~~~~g~~~~GL~R~reF~~~e~~~f~-~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e 218 (297)
T cd00770 145 -----AGSAGRDTRGLFRVHQFEKVEQFVFT-KPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIE 218 (297)
T ss_pred -----cccCCCCCCCceEEEeeeeeeEEEEE-CchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheeeh
Confidence 69999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceeeeeecCcchhhhH
Q psy10095 502 VYSYSLNSWVTCMDLNAKVYIQI 524 (680)
Q Consensus 502 vW~P~~~~Y~EisS~Sn~~~~q~ 524 (680)
+|||+++.|+||+|||||+++|.
T Consensus 219 ~~~p~~~~~~e~~s~s~~~d~~s 241 (297)
T cd00770 219 AWMPGQGKYREISSCSNCTDFQA 241 (297)
T ss_pred eecCCCCCeEEEEEccCccChhh
Confidence 99999999999999999999983
No 8
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-43 Score=392.54 Aligned_cols=240 Identities=11% Similarity=0.085 Sum_probs=205.3
Q ss_pred CCCCC---CCeeEE-eCC---CCCCCChhhhhhcCCccccc-CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccC
Q psy10095 267 STPEV---YETIYE-YDP---DREGKNKIDMDALSKYVQYT-NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNT 338 (680)
Q Consensus 267 ~VP~~---~n~vv~-~~p---~~~~~~H~elg~~l~l~D~~-~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P 338 (680)
.||.+ ..++++ ..+ +|+ .+|+++++++||+|-. |++||++++.|++|.+||.+|++|.+..+.||+++.+|
T Consensus 171 ~~~~g~~~~~~~~~~~~~~~~~F~-~~h~el~~~~glldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P 249 (517)
T PRK00960 171 TFYVGKAEPGTIVSESKKREITFD-GDPTEEAEKLGWVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFP 249 (517)
T ss_pred ccCCCCCCCCeEEEEeCCCCCCCC-CCHHHHHHHCCCccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECC
Confidence 56633 335665 333 244 9999999999999855 78999999999999999999999886677799999999
Q ss_pred cccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhh----------------------hhhcc
Q psy10095 339 DLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFC----------------------AYHTN 396 (680)
Q Consensus 339 ~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~----------------------~~~~~ 396 (680)
.|++.+++++||++|.|.+++|++.....+... .....+||++|+| +|+. ++|++
T Consensus 250 ~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~--~~~~~~~l~~T~E-vpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~ 326 (517)
T PRK00960 250 KLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEY--FEEFVDEMMVKKE-VPIEKLKEKLRDPGYVLAPAQCEPFYQFFQG 326 (517)
T ss_pred cccCHHHHhhcCCccCChhhceEeecccccccc--ccchhhhcccccc-ccccccccccccccccccccCcHHHHHHHhC
Confidence 999999999999999999999988631111000 0011368888876 7887 99999
Q ss_pred cccCCCCCCceEeeeC-cccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHH
Q psy10095 397 HSVNVKDLPVKYVTSG-KQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDK 475 (680)
Q Consensus 397 e~l~~~~LPlKy~a~s-~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~ 475 (680)
+++..++||+||+++| +|||. |+|+ ++||+|||||+|+|+|++| +||+|++++++|+..++.+++.
T Consensus 327 ~ils~rdLPLrl~e~sG~cFR~--------EsGs----~~GL~RV~eF~kvE~h~f~-tpEqs~ee~e~ll~~~e~i~~~ 393 (517)
T PRK00960 327 ETVDVDELPIKFFDRSGWTYRW--------EGGG----AHGLERVNEFHRIEIVWLG-TPEQVEEIRDELLKYAHILAEK 393 (517)
T ss_pred CcCChhhCCHHHhhccCCceeC--------CCCC----CCCCcccceeEEEEEEEEe-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999933 55555 5665 7999999999999999999 9999999999999999999999
Q ss_pred cCCc-eEEee----------cCCCCCCcccccceeeeeeec---CCCceeeeeecCcchhhh
Q psy10095 476 LNMK-YRICK----------APADVLHTSESHRLEYQVYSY---SLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 476 L~Lp-yRVv~----------m~tgdLg~~a~kkyDIEvW~P---~~~~Y~EisS~Sn~~~~q 523 (680)
|||| ||++. +|++||+|++++||||||||| ++++|+||+||||+.++|
T Consensus 394 LgLp~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~f 455 (517)
T PRK00960 394 LDLEYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHF 455 (517)
T ss_pred cCCCceEEecccccccccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchh
Confidence 9999 99999 999999999999999999999 899999999999998887
No 9
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=1.8e-40 Score=365.85 Aligned_cols=230 Identities=9% Similarity=0.039 Sum_probs=195.5
Q ss_pred CCChhhhhhcCCcccc-cCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEe
Q psy10095 284 GKNKIDMDALSKYVQY-TNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVL 362 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~-~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i 362 (680)
.++|+||++++||+|. .|++||||++.||.|++||++|++|.++.+.||+++++|+||+.++|++||++|.|.+++|++
T Consensus 194 ~~~h~el~~k~glidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~V 273 (520)
T TIGR00415 194 DGDPTDEAEKLGWVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYC 273 (520)
T ss_pred CCCHHHHHHHCCCeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEE
Confidence 4999999999999985 478999999999999999999999988887899999999999999999999999999999988
Q ss_pred ecCCC--c----------------ccccc--ccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCcccc
Q psy10095 363 VNNEN--D----------------LSEIG--YEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLC 422 (680)
Q Consensus 363 ~~~~~--~----------------~~~~~--~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~C 422 (680)
...+. + ...+. ....+++|+||+| +|+.++|++++++.++||++|+++ +.- |
T Consensus 274 t~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE-~ply~~~a~~Ils~~dLPlk~~~~----s~~---C 345 (520)
T TIGR00415 274 CAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQC-EPFYQFFEGEVIDAEDKPIKFFDR----SGW---T 345 (520)
T ss_pred ecCCCCcchhhccccccccccccccccccccccCCceEEeCccH-HHHHHHHhccccChhhCCeeEEEE----ecC---e
Confidence 42111 0 00000 0123688999986 999999999999999999999994 321 5
Q ss_pred ccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEee---------cC--CCCCC
Q psy10095 423 ENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICK---------AP--ADVLH 491 (680)
Q Consensus 423 FR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~---------m~--tgdLg 491 (680)
||.|+|+ ++||+|+|||.|||+|.+| +||+|++.+++|++++++|++.|+|||||+. ++ ++||+
T Consensus 346 FR~EaGs----trGL~RvhEF~kvE~v~~~-tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k~~~~dl~ 420 (520)
T TIGR00415 346 YRWEAGG----AKGLDRVHEFLRVECVWIA-EPEETEEIRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIE 420 (520)
T ss_pred EeCCCCC----CCCCceeeEEEEEEEEEEe-CHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCcccccccCccccccc
Confidence 5556787 6999999999999999999 9999999999999999999999999999986 33 78899
Q ss_pred cccccceeeeeeecCCCceeeeeecCcchhhhHHH
Q psy10095 492 TSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIVF 526 (680)
Q Consensus 492 ~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q~~~ 526 (680)
|++++|||+|+|+|+++.|+.=.+|.+.++++..|
T Consensus 421 F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~hF 455 (520)
T TIGR00415 421 FPDVPKYEMRLSLPGIEDERKGVAVTSANVHGTHF 455 (520)
T ss_pred CcccceEEEEEEEccccCCCCCcEEEEeechhccc
Confidence 99999999999999999877655666565665444
No 10
>KOG3408|consensus
Probab=100.00 E-value=9.5e-42 Score=309.11 Aligned_cols=109 Identities=51% Similarity=0.805 Sum_probs=102.6
Q ss_pred CCcchhhhhccccC-CchhhhhhcccchhHhhhccCCCCCCCCCceeecccccccccChHHHHHhhccchhhhhhhhccc
Q psy10095 12 CTNKRSIKTKLYKR-DLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEV 90 (680)
Q Consensus 12 ~~~~~~~ktk~r~k-d~Dqi~~dl~~~~~~~~~~~~~d~dlpG~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~~ 90 (680)
.+.++..||+.|++ |||||++||.+++ ++++++++|+||||+|||||++|||||||+.+|+.|+|||+||||||+|++
T Consensus 13 ~~~hr~~r~r~~~r~dLDqi~~dl~~~~-~kll~~~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~ 91 (129)
T KOG3408|consen 13 SNRHRINRTRGRARKDLDQIDEDLETQK-GKLLNQEIDPDLPGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE 91 (129)
T ss_pred chhHHHHhhhccCccccccccccccccc-chhhcCcCCCCCCCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence 45778888888887 9999999999866 789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCCCCCCcccccccccccc
Q psy10095 91 EPYTVEESERAAGYGSYQTPKIRKLQTQSLDK 122 (680)
Q Consensus 91 ~pyt~~eae~aag~g~~~~~~~~~~~~~~~~~ 122 (680)
+||||+|||+||||| +++|++.+++++.+++
T Consensus 92 ~PySQeeAe~A~G~g-~vpp~~~~~~s~l~~~ 122 (129)
T KOG3408|consen 92 VPYSQEEAEAAAGMG-FVPPKKLKVESELSKE 122 (129)
T ss_pred CCccHHHHHHhccCC-cCCCcchhhhhhcccC
Confidence 999999999999999 8999999999997776
No 11
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=3.5e-38 Score=326.34 Aligned_cols=215 Identities=8% Similarity=-0.056 Sum_probs=195.4
Q ss_pred hhhhhcCCccccc-CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHH-HhhcCCCCCCCCceEeecC
Q psy10095 288 IDMDALSKYVQYT-NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIV-EGYGDHYLSPHDNMVLVNN 365 (680)
Q Consensus 288 ~elg~~l~l~D~~-~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~-~g~G~~p~~~~~~~~i~~~ 365 (680)
.+|++++|++|+. .+++|++.+.|++|.++|++|+.+.+. +.||++|.+|.|++.+++ .++|+.+.+.+++|.+.+.
T Consensus 7 ~~l~~~~~~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~-~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~ 85 (261)
T cd00778 7 TEVITKAELIDYGPVKGCMVFRPYGYAIWENIQKILDKEIK-ETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHG 85 (261)
T ss_pred HHHHHHhCCcccCCCCCeEEEcccHHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEec
Confidence 4799999999996 689999999999999999999998774 579999999999999998 5799999999999998642
Q ss_pred CCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce
Q psy10095 366 ENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK 445 (680)
Q Consensus 366 ~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K 445 (680)
+.+ ..+++++|.||+| ++++++|++++....+||++++.+|+|||.| + ++++||+|+|||+|
T Consensus 86 ~~~-----~~~~~~~L~Pt~e-~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E--------~----~~~~Gl~R~reF~~ 147 (261)
T cd00778 86 GLE-----ELEEPLALRPTSE-TAIYPMFSKWIRSYRDLPLKINQWVNVFRWE--------T----KTTRPFLRTREFLW 147 (261)
T ss_pred CCc-----ccCCcEEEcCCCC-HHHHHHHHhhccchhhcCHHHHhhhhhccCC--------C----CCCCceeEeeeeee
Confidence 211 0124799999997 8999999999999999999999988888887 2 56799999999999
Q ss_pred EEE-EEecCChhHHHHHHHHHHHHHHHHHHHc-CCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 446 VNL-FVGTNNHENLCKEFQNIQSLLKSVMDKL-NMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 446 VE~-f~~~~~pe~S~~~~eeml~~~e~il~~L-~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
+|+ +.+| ++|+|.+++++|++.+++||+.| |||||++.+|++|+++++.+++||||||| .++|+||||||||+++|
T Consensus 148 ~d~h~~~~-~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~ 225 (261)
T cd00778 148 QEGHTAHA-TEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNF 225 (261)
T ss_pred eceeeccC-CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEecccccccc
Confidence 999 6799 99999999999999999999999 99999999999999999999999999999 99999999999998887
No 12
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=1.7e-37 Score=320.29 Aligned_cols=212 Identities=10% Similarity=0.021 Sum_probs=193.8
Q ss_pred hhhhhcCCcccccCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCC
Q psy10095 288 IDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNEN 367 (680)
Q Consensus 288 ~elg~~l~l~D~~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~ 367 (680)
.+|..+.|+++..+++||++.+.|+++.++|++++.+.+ .+.||++|.+|.|++.+++.++|+.+.+.+++|.+.+.
T Consensus 7 ~~l~~~ag~~~~~~~G~~~~lP~g~~l~~~i~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~-- 83 (255)
T cd00779 7 HKLLLRAGFIRQTSSGLYSWLPLGLRVLKKIENIIREEM-NKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR-- 83 (255)
T ss_pred HHHHHHcCCcccCCCceEEECchHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecC--
Confidence 467778899988889999999999999999999999876 56799999999999999999999999999999988631
Q ss_pred ccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEE
Q psy10095 368 DLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVN 447 (680)
Q Consensus 368 ~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE 447 (680)
++++++|.||+| +++++++++.+....+||+|++.+|+|||.| + ++.+||+|+|||.++|
T Consensus 84 -------~~~~l~LrPt~e-~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E--------~----~~~~Gl~R~reF~q~e 143 (255)
T cd00779 84 -------HGKEFLLGPTHE-EVITDLVANEIKSYKQLPLNLYQIQTKFRDE--------I----RPRFGLMRGREFLMKD 143 (255)
T ss_pred -------CCCeEEEecCCc-HHHHHHHHhccccHhhCCHHHHhCcceecCC--------C----CCCCceeeeeeEeHhh
Confidence 134699999997 8999999999988889999999977777776 3 5789999999999999
Q ss_pred EEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 448 LFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 448 ~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
+..++.++++|++++++|+..++++|+.|||||+++..++++||..++++||||+|||+++ |+||+|||||++.|
T Consensus 144 ~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~ 218 (255)
T cd00779 144 AYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKY 218 (255)
T ss_pred heeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhH
Confidence 9999955679999999999999999999999999999999999999999999999999988 89999999999888
No 13
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.8e-35 Score=303.70 Aligned_cols=215 Identities=13% Similarity=0.017 Sum_probs=185.0
Q ss_pred hhhhcCCccccc-CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCC-CCceEeecCC
Q psy10095 289 DMDALSKYVQYT-NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSP-HDNMVLVNNE 366 (680)
Q Consensus 289 elg~~l~l~D~~-~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~-~~~~~i~~~~ 366 (680)
+|..+.|++|.. +++++.+...|+++-+.|.++.-+.+ .+.||++|.+|.|++.+++.++|+.|++. +++|.+...+
T Consensus 8 ~~l~~ag~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~ 86 (264)
T cd00772 8 EHIGKAELADQGPGRGIINFLPLAKAILDKIENVLDKMF-KEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAG 86 (264)
T ss_pred HHHHhcCCccccCCCCEEEECCcHHHHHHHHHHHHHHHH-HHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCC
Confidence 567788999987 78999999999999999999988654 66899999999999999999999999966 5667664211
Q ss_pred CccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceE
Q psy10095 367 NDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKV 446 (680)
Q Consensus 367 ~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KV 446 (680)
++ ..+++++|.||+| +|++++|++++....+||++++.+|+|||.| + ++++||+|+|||.|+
T Consensus 87 ~~-----~~~~~l~LrPt~e-~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E--------~----r~~~Gl~R~reF~~~ 148 (264)
T cd00772 87 DE-----ELEEDFALRPTLE-ENIGEIAAKFIKSWKDLPQHLNQIGNKFRDE--------I----RPRFGFLRAREFIMK 148 (264)
T ss_pred CC-----ccCceEEECCCCC-HHHHHHHHhhhhhhhccCeeEEEEeCeEeCc--------C----CCCCCcceeeEEEEe
Confidence 10 0125799999997 8999999999998899999999987777776 3 568999999999999
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHHHHHHcC-CceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 447 NLFVGTNNHENLCKEFQNIQSLLKSVMDKLN-MKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 447 E~f~~~~~pe~S~~~~eeml~~~e~il~~L~-LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
|++.++.++++|+++++.|++.+++||+.|| ||||++.+|++|++++++++|||||||| .++|.++.++|||.+.|
T Consensus 149 e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p-~~~~~~~~~~~~~~~~~ 225 (264)
T cd00772 149 DGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALME-DGKAKQAETGHIFGEGF 225 (264)
T ss_pred eeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECC-CCCEeEEEeeeeccCCc
Confidence 9999933999999999999999999999999 9999999999999999999999999999 34455555556687777
No 14
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=266.44 Aligned_cols=102 Identities=48% Similarity=0.719 Sum_probs=88.9
Q ss_pred CCCcccccccc-CCcchhhhhccccCCchhhhhhccc-chhHhhhccCCCCCCCCCceeecccccccccChHHHHHhhcc
Q psy10095 1 MTGPQTKKKKN-CTNKRSIKTKLYKRDLDQIDGDCKE-ENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 1 m~g~~~~kk~~-~~~~~~~ktk~r~kd~Dqi~~dl~~-~~~~~~~~~~~d~dlpG~gq~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|+...+|+|+. .+..+..|||.++||||||++||.. |+..++ |+|++|||+|||||++|||||+++.+|..|.|+
T Consensus 1 Mgr~~~Krk~~~~~~~~i~rtr~~grDlDqi~nDls~~Es~~Kl---p~Dp~lPGlGqhYCieCaryf~t~~aL~~Hkkg 77 (126)
T COG5112 1 MGRSDTKRKKRRSNRLRIKRTRLFGRDLDQIKNDLSTKESQKKL---PYDPELPGLGQHYCIECARYFITEKALMEHKKG 77 (126)
T ss_pred CCchhHhHhhhccchhHHHHHHHhcccHHHHHHhcchhhhhccC---CCCCCCCCCceeeeehhHHHHHHHHHHHHHhcc
Confidence 54444555554 3467889999999999999999954 444444 999999999999999999999999999999999
Q ss_pred chhhhhhhhcccCCCCHHHHHHhcCCC
Q psy10095 79 KVHKRRLKALEVEPYTVEESERAAGYG 105 (680)
Q Consensus 79 K~HKrr~K~l~~~pyt~~eae~aag~g 105 (680)
|+||||+|+|+|+||||+|||||+|+.
T Consensus 78 kvHkRR~KelRevpytQe~aeaAvg~~ 104 (126)
T COG5112 78 KVHKRRAKELREVPYTQEDAEAAVGLT 104 (126)
T ss_pred chhHHHHHHHhcCcchhHHHHHHhccc
Confidence 999999999999999999999999966
No 15
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.98 E-value=1.3e-32 Score=289.79 Aligned_cols=251 Identities=12% Similarity=0.109 Sum_probs=208.8
Q ss_pred ChhhhhhcCCccccc---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEe
Q psy10095 286 NKIDMDALSKYVQYT---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVL 362 (680)
Q Consensus 286 ~H~elg~~l~l~D~~---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i 362 (680)
+|++||++++++||+ +++++++.+.|+++.++|.+|+.+.+ .+.||++|.+|.|++.+++.++|+.+.+.+++|.+
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 79 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQ-RKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF 79 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHH-HHcCCEEEECCeecCHHHHhhCCCccccccCceEe
Confidence 699999999999996 57999999999999999999999877 46899999999999999999999999999999988
Q ss_pred ecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhc
Q psy10095 363 VNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQ 442 (680)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQ 442 (680)
.. .+.+++|.||++ ++++.+|++.+....+||+|++.+|+|||.| +++ +++||+|+||
T Consensus 80 ~~----------~~~~l~LRP~~~-~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E--------~~~---~~~Gl~R~re 137 (298)
T cd00771 80 EE----------EDEEYGLKPMNC-PGHCLIFKSKPRSYRDLPLRLAEFGTVHRYE--------QSG---ALHGLTRVRG 137 (298)
T ss_pred cc----------CCceEEEcccCC-HHHHHHHHhhccchhhCCeEEEEecCcccCC--------CCC---CCCCcccccc
Confidence 63 124689999886 8999999999988889999999988888776 343 7999999999
Q ss_pred cceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhh
Q psy10095 443 REKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYI 522 (680)
Q Consensus 443 F~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~ 522 (680)
|+++|+.++| .++++++++++|+++++++|+.|||++++|.+++.+ +...+|+|+|+|+++.|+|++|+|+..|.
T Consensus 138 F~q~e~~i~~-~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~----~~~~~d~e~W~~a~~~l~e~l~~~~~~~~ 212 (298)
T cd00771 138 FTQDDAHIFC-TPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRP----EKFIGSDEVWEKAEAALREALEEIGLPYE 212 (298)
T ss_pred EEECCEEEEe-CCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcCh----hHhcCCHHHHHHHHHHHHHHHHhCCCCce
Confidence 9999999999 889999999999999999999999999999999998 56689999999999999999999987533
Q ss_pred hHHHHHHHHHHHHhhhccccccccCCCCcc--cchHHHHHHHHHHhhhcCCc
Q psy10095 523 QIVFFIQEMSWMKKLAEKIIPNIDENIGME--YMSFLKRTADRLCMKWNRSY 572 (680)
Q Consensus 523 q~~~~~~e~~~~~k~~~~l~~s~dG~~g~e--~~~F~krLA~~Ls~Kw~~~y 572 (680)
+.+.+ -.=|+-++-+.+...+|.+ +.+.. |...++.+++-.|
T Consensus 213 -----~~~g~-~afygpkid~~~~d~~gr~~q~~t~q--ld~~~~~~f~l~y 256 (298)
T cd00771 213 -----INEGE-GAFYGPKIDFHVKDALGREWQCSTIQ--LDFNLPERFDLTY 256 (298)
T ss_pred -----ECCCC-cccccceEEEEEEeCCCCeeecceeE--eeccChhhcCCEE
Confidence 11111 2233456655554444444 22222 5555556665555
No 16
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.97 E-value=1.6e-30 Score=252.20 Aligned_cols=171 Identities=15% Similarity=0.218 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhh
Q psy10095 314 FEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAY 393 (680)
Q Consensus 314 LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~ 393 (680)
|+.||++|+.+.+..+.||.+|.+|.|++.+++++||+.+.+.+.+|.+.+. ++.+++|.||++ ++++++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~---------~~~~~~L~pt~~-~~~~~~ 70 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDR---------GDEEYCLRPTSE-PGIYSL 70 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEET---------TTEEEEE-SSSH-HHHHHH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeec---------ccccEEeccccc-cceeee
Confidence 6899999999877636899999999999999999999999998888888741 124589999997 899999
Q ss_pred hcccccC-CCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHH
Q psy10095 394 HTNHSVN-VKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSV 472 (680)
Q Consensus 394 ~~~e~l~-~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~i 472 (680)
+.+.... ..+||++++.+|+|||.| + +.++||+|+|||+++|++++| +++++...++++++.+.+|
T Consensus 71 ~~~~~~~~~~~LP~~~~~~g~~fR~E--------~----~~~~gl~R~reF~~~e~~~f~-~~~~~~~~~~~~~~~~~~i 137 (173)
T PF00587_consen 71 FKNEIRSSYRDLPLKLYQIGTCFRNE--------A----RPTRGLFRLREFTMDEMHIFC-TPEQSEEEFEELLELYKEI 137 (173)
T ss_dssp HHHHEEBHGGGSSEEEEEEEEEEBSS--------S----SSBSTTTS-SEEEEEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred ecceeeeccccCCeEEeecccccccc--------c----ccccccceeeEeeeeceEEEe-CCcccHHHHHHHHHHHHHH
Confidence 9999998 889999999998888886 3 789999999999999999999 7799999999999999999
Q ss_pred HHHcCC-ceEEeecCCCCCCcccccceeeeeeecCC
Q psy10095 473 MDKLNM-KYRICKAPADVLHTSESHRLEYQVYSYSL 507 (680)
Q Consensus 473 l~~L~L-pyRVv~m~tgdLg~~a~kkyDIEvW~P~~ 507 (680)
|+.||| |||++..+++||+..+..++|||+|+|++
T Consensus 138 ~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~ 173 (173)
T PF00587_consen 138 LEKLGLEPYRIVLSSSGELGAYAKYEFDIEAWFPAQ 173 (173)
T ss_dssp HHHTTSGCEEEEEEETCTSCTTSSEEEEEEEEETCC
T ss_pred HHHcCCceEEEEEcCCCccCCCHHHcccHHHhCcCC
Confidence 999999 99999999999999999999999999986
No 17
>PLN02837 threonine-tRNA ligase
Probab=99.95 E-value=3.4e-28 Score=278.77 Aligned_cols=183 Identities=9% Similarity=0.098 Sum_probs=164.8
Q ss_pred CCCChhhhhhcCCccccc---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCc
Q psy10095 283 EGKNKIDMDALSKYVQYT---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDN 359 (680)
Q Consensus 283 ~~~~H~elg~~l~l~D~~---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~ 359 (680)
..+||++||++|+||||. |++|||+.+.||+|++||++|+.+.+. ++||++|.||.|++.+++++||+.|.+.+++
T Consensus 215 ~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~-~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~m 293 (614)
T PLN02837 215 KRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHF-EHGYDLLYTPHVAKADLWKTSGHLDFYKENM 293 (614)
T ss_pred hhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHH-HCCCEEEECCccCCHHHHhhcCCcccchhhc
Confidence 459999999999999996 789999999999999999999998775 4799999999999999999999999999999
Q ss_pred eEeecCCCccccccccCCCceeeccchhhhh-hhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccch
Q psy10095 360 MVLVNNENDLSEIGYEERRNHLVGSAHMSMF-CAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLY 438 (680)
Q Consensus 360 ~~i~~~~~~~~~~~~~~~~l~LigTaeevpl-~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~ 438 (680)
|.+.+ .+++.|++++++ .|+ +++|.+.+....+||++++.+|+|||.|+ . |. ++||+
T Consensus 294 f~~~~----------~~~~~y~l~p~~-~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~--------~--g~-~~GL~ 351 (614)
T PLN02837 294 YDQMD----------IEDELYQLRPMN-CPYHILVYKRKLHSYRDLPIRVAELGTVYRYEL--------S--GS-LHGLF 351 (614)
T ss_pred ccccC----------CCCceEEECCCC-cHHHHHHHhCccCChhHCCHhhEeecccccCCC--------C--CC-CcCcc
Confidence 98753 123578888887 465 89999999999999999999888888873 2 32 99999
Q ss_pred hhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCC
Q psy10095 439 NSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADV 489 (680)
Q Consensus 439 RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgd 489 (680)
|+|||+++|++++| +++++.+++++|++.++++|+.||+||+++.+++.-
T Consensus 352 RvreF~~~e~h~f~-~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~ 401 (614)
T PLN02837 352 RVRGFTQDDAHIFC-LEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRP 401 (614)
T ss_pred cccceEECeEEEEe-CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCc
Confidence 99999999999999 999999999999999999999999999999999973
No 18
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.95 E-value=7.9e-27 Score=265.30 Aligned_cols=210 Identities=13% Similarity=0.086 Sum_probs=188.9
Q ss_pred CChhhhhhcCCcccccCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeec
Q psy10095 285 KNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVN 364 (680)
Q Consensus 285 ~~H~elg~~l~l~D~~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~ 364 (680)
.+|.=| .+.|+++-.++++|++.+.|+++.++|.+++.+.+ .+.||++|.+|.|...+++.++|..+.+.+++|.+.+
T Consensus 21 ~s~~ll-~~ag~i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~-~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d 98 (565)
T PRK09194 21 ISHQLL-LRAGYIRKLASGIYTYLPLGLRVLRKIENIVREEM-NKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKD 98 (565)
T ss_pred hhHHHH-HhCCCccccCCCeeEECccHHHHHHHHHHHHHHHH-HHcCCEEEECcccCcHHHHhhcCCccccchhceEEec
Confidence 577644 45599988899999999999999999999999866 5689999999999999999999999999888898863
Q ss_pred CCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccc
Q psy10095 365 NENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQRE 444 (680)
Q Consensus 365 ~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~ 444 (680)
. .+++++|.||+| .++++++++++....+||+|+..+++|||.| + +..+||+|+|||.
T Consensus 99 ~---------~~~~l~LrPt~e-~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E--------~----rp~~Gl~R~reF~ 156 (565)
T PRK09194 99 R---------HGRDFVLGPTHE-EVITDLVRNEIKSYKQLPLNLYQIQTKFRDE--------I----RPRFGLMRGREFI 156 (565)
T ss_pred C---------CCCEEEECCCCh-HHHHHHHHhhhhhcccCCeEEEEeeCCccCC--------C----CCCCcccccccEE
Confidence 1 235799999997 7999999999998889999999988888886 2 4689999999999
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhh
Q psy10095 445 KVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYI 522 (680)
Q Consensus 445 KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~ 522 (680)
++|++.|+.+.+++++.+++|++.+.++|+.|||||+++..++|+||.+++++| |+|+...|.||+|||||.|.
T Consensus 157 q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~e~----~~~~~~g~~~~~~c~~c~~~ 230 (565)
T PRK09194 157 MKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASHEF----MVLADSGEDTIVYSDESDYA 230 (565)
T ss_pred EeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeEEE----EEecCCCceEEEEeCCCCcc
Confidence 999999995566678899999999999999999999999999999999999999 99999999999999999973
No 19
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.93 E-value=2.2e-25 Score=253.41 Aligned_cols=214 Identities=11% Similarity=0.068 Sum_probs=188.6
Q ss_pred CChhhhhhcCCcccccCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeec
Q psy10095 285 KNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVN 364 (680)
Q Consensus 285 ~~H~elg~~l~l~D~~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~ 364 (680)
.+|. |..+-|+++-.++++|++.+.|+++.++|.+++.+.+ .+.||++|.+|.|...+++.++|..+.+.+++|.+.+
T Consensus 21 ~s~~-ll~rag~i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~-~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~d 98 (568)
T TIGR00409 21 KSHQ-LLLRAGFIRRLGSGLYNWLPLGLRVLKKVENIVREEM-NKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKD 98 (568)
T ss_pred hhHH-HHHhCCCccccCCceEEECChHHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHHhhcCCCCccchhcEEEec
Confidence 4665 5566799998899999999999999999999999766 5679999999999999999999999988888898863
Q ss_pred CCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccc
Q psy10095 365 NENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQRE 444 (680)
Q Consensus 365 ~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~ 444 (680)
. .+++++|.||+| .++++++++.+....+||+++..+++|||.|+ +...||+|+|||.
T Consensus 99 r---------~~~~l~LrPT~E-e~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~------------rpr~Gl~R~REF~ 156 (568)
T TIGR00409 99 R---------KGREFVLGPTHE-EVITDLARNEIKSYKQLPLNLYQIQTKFRDEI------------RPRFGLMRGREFI 156 (568)
T ss_pred C---------CCCEEEEcCCCc-HHHHHHHHHHHhhccccCeEEEEeeCEeeCCC------------CCCCCccccccEE
Confidence 1 235799999997 78999999999988899999999888888872 4689999999999
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhhH
Q psy10095 445 KVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQI 524 (680)
Q Consensus 445 KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q~ 524 (680)
++|++.|+.+.+.++++++.|+....+||+.|||||+++..++|+||.+++++||+|++ ..+.||+|||+|. +|.
T Consensus 157 ~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~----~ge~~i~~c~~~~-y~a 231 (568)
T TIGR00409 157 MKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAE----SGEDTIVYSDESD-YAA 231 (568)
T ss_pred EEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEecC----CCceEEEEecCcc-cch
Confidence 99999999556777889999999999999999999999999999999999999999974 4569999999665 566
Q ss_pred HHH
Q psy10095 525 VFF 527 (680)
Q Consensus 525 ~~~ 527 (680)
+..
T Consensus 232 n~e 234 (568)
T TIGR00409 232 NIE 234 (568)
T ss_pred hhh
Confidence 643
No 20
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.93 E-value=3e-25 Score=223.23 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhh
Q psy10095 311 AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMF 390 (680)
Q Consensus 311 gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl 390 (680)
|+++.++|.+++.+.+. +.||.+|.+|.|+..++++++|....+.+.+|.+.+.++ . ..++.++|.||++ +|+
T Consensus 1 ~~~~~~~l~~~~~~~~~-~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~LrP~~~-~~i 73 (235)
T cd00670 1 GTALWRALERFLDDRMA-EYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGR-E----LRDTDLVLRPAAC-EPI 73 (235)
T ss_pred CHHHHHHHHHHHHHHHH-HcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcc-c----ccCCeEEEecCCC-HHH
Confidence 68899999999998775 579999999999999999999978888888888864211 0 0135689999997 899
Q ss_pred hhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHH
Q psy10095 391 CAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLK 470 (680)
Q Consensus 391 ~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e 470 (680)
+.++++.+....+||++++.+|+|||.| ++.+ .|++|+|||.++|+..++ .++++.+.++++++.+.
T Consensus 74 ~~~~~~~~~~~~~lP~r~~~~g~~fR~E--------~~~~----~gl~R~reF~q~e~~~~~-~~~~~~~~~~e~~~~~~ 140 (235)
T cd00670 74 YQIFSGEILSYRALPLRLDQIGPCFRHE--------PSGR----RGLMRVREFRQVEYVVFG-EPEEAEEERREWLELAE 140 (235)
T ss_pred HHHHhccCccchhcCeeeeeecccccCC--------CCCC----CCChhheeeeeceEEEEc-CHHHHHHHHHHHHHHHH
Confidence 9999999877789999999988888886 3433 899999999999999999 89899999999999999
Q ss_pred HHHHHcCCceEEeecCCCCCC--------cccccceeeeeeecCCCceeeeeecCcchhhhHH
Q psy10095 471 SVMDKLNMKYRICKAPADVLH--------TSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIV 525 (680)
Q Consensus 471 ~il~~L~LpyRVv~m~tgdLg--------~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q~~ 525 (680)
++|+.|||||+++..+.++++ +.+..++|||+|+|.+++|.||+++|++.++|.-
T Consensus 141 ~~l~~lgl~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~ 203 (235)
T cd00670 141 EIARELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHF 203 (235)
T ss_pred HHHHHcCCcEEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhh
Confidence 999999999999999999999 8999999999999999999999999999877733
No 21
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.93 E-value=1.9e-25 Score=249.44 Aligned_cols=218 Identities=10% Similarity=-0.032 Sum_probs=193.1
Q ss_pred CCChhhhhhcCCccccc-CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHH-hhcCCCCCCCCceE
Q psy10095 284 GKNKIDMDALSKYVQYT-NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVE-GYGDHYLSPHDNMV 361 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~-~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~-g~G~~p~~~~~~~~ 361 (680)
..-|.+|.++.+|+|+. .+++|++...|+++.++|++|+.+.+ .+.||.+|.+|.|+..+++. ++|..+.|.+++|.
T Consensus 15 ~~w~~~~~~~~~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~ 93 (477)
T PRK08661 15 SEWYNDVVKKAELADYSPVKGCMVIKPYGYAIWENIQKILDKLF-KETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAW 93 (477)
T ss_pred HHHHHHHHHHccCcccCCCCceEEECccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhhcCchhhcccccEE
Confidence 36799999999999985 47899999999999999999999876 56799999999999999985 48999999999998
Q ss_pred eecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhh
Q psy10095 362 LVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSI 441 (680)
Q Consensus 362 i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvH 441 (680)
+...+.. ..+..++|.||+| .+++.+|++.+....+||+++..+|+|||.| + + ++||+|+|
T Consensus 94 v~~~~~~-----~~~e~l~LrPtsE-~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E--------~----~-~rgl~R~r 154 (477)
T PRK08661 94 VTHGGGE-----KLEEKLALRPTSE-TIIYPMYKKWIQSYRDLPLLYNQWVNVVRWE--------T----K-TRPFLRTR 154 (477)
T ss_pred EEccCCC-----ccCceEEEecCCc-HHHHHHHHhhhcchhhcCHHHhcccceeeCC--------C----C-CCCcceee
Confidence 8632211 0134699999987 8999999999998899999999988888887 2 3 89999999
Q ss_pred ccceEEE-EEecCChhHHHHHHHHHHHHHHHHH-HHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcc
Q psy10095 442 QREKVNL-FVGTNNHENLCKEFQNIQSLLKSVM-DKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAK 519 (680)
Q Consensus 442 QF~KVE~-f~~~~~pe~S~~~~eeml~~~e~il-~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~ 519 (680)
||.+.|+ +.+| +++++.+++++|++....|| +.|||||+++..|.+|..+.+..+||||+|||. +++.|+++++++
T Consensus 155 EF~~~E~h~~~~-~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~L 232 (477)
T PRK08661 155 EFLWQEGHTAHA-TEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYL 232 (477)
T ss_pred eEEEcceeeeeC-CHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEeccc
Confidence 9999999 5578 89999999999999999999 999999999999999999999999999999997 899999999988
Q ss_pred hhhh
Q psy10095 520 VYIQ 523 (680)
Q Consensus 520 ~~~q 523 (680)
...+
T Consensus 233 g~~~ 236 (477)
T PRK08661 233 GQNF 236 (477)
T ss_pred ccch
Confidence 6543
No 22
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.91 E-value=3.5e-24 Score=245.09 Aligned_cols=184 Identities=9% Similarity=0.067 Sum_probs=166.4
Q ss_pred CCChhhhhhcCCcccccC---cceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 284 GKNKIDMDALSKYVQYTN---RLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~~---srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
.++|.+||+++||+||.. ++.+++...|++|..+|.+|+.+.+. +.||++|.+|.|++......+|+.+.|.+++|
T Consensus 196 ~~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~-~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my 274 (613)
T PRK03991 196 EPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVV-ELGAMPVETPIMYDLSHPAIREHADKFGERQY 274 (613)
T ss_pred CCCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHH-HCCCEEEECCeecChhHHhhcccccccchhce
Confidence 479999999999999963 56777779999999999999998775 47999999999999999999999999999999
Q ss_pred EeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCc-ccCCCccccccccccCCCCCcccchh
Q psy10095 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGK-QYGFHNLLCENTLKTSKHSRVENLYN 439 (680)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~-cyr~Ea~~CFR~EaGs~G~dtrGL~R 439 (680)
.+.. .+.+++|.||++ ++++.+|.+.+....+||++++.+|+ |||.|+ +.+++||+|
T Consensus 275 ~v~~----------~~e~l~Lrp~~c-~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~-----------~g~l~GL~R 332 (613)
T PRK03991 275 RVKS----------DKKDLMLRFAAC-FGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQ-----------RGELVGLKR 332 (613)
T ss_pred EecC----------CCceEEEecCCC-HHHHHHHhCCcCchhhCChhhheecchheeCCC-----------CCCCcCccc
Confidence 8863 124689999997 89999999999999999999999999 999973 246999999
Q ss_pred hhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCC
Q psy10095 440 SIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVL 490 (680)
Q Consensus 440 vHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdL 490 (680)
+|||+++||+.||.+++++.++++++++.+.++|+.||+||+++.++++|.
T Consensus 333 vReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t~df 383 (613)
T PRK03991 333 LRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFTEDF 383 (613)
T ss_pred ccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCHHHH
Confidence 999999999999933699999999999999999999999999999998775
No 23
>PLN02908 threonyl-tRNA synthetase
Probab=99.91 E-value=2.9e-24 Score=249.22 Aligned_cols=180 Identities=9% Similarity=0.135 Sum_probs=161.9
Q ss_pred CCCChhhhhhcCCccccc--CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 283 EGKNKIDMDALSKYVQYT--NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 283 ~~~~H~elg~~l~l~D~~--~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
..+||..||+.++||+|. +++++++.+.|++|.++|++|+.+.+. +.||++|.+|.|++.+++++||+.+.+.+++|
T Consensus 290 ~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf 368 (686)
T PLN02908 290 KKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYW-ERGYDEVITPNIYNMDLWETSGHAAHYKENMF 368 (686)
T ss_pred cccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHHhhcCCccccchhcc
Confidence 458999999999999996 478888889999999999999998774 57999999999999999999999999999998
Q ss_pred EeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhh
Q psy10095 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNS 440 (680)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~Rv 440 (680)
.+.. ++++++|.||++ ++++.+|.+......+||+|++.+|+|||.| ++++ ++||+||
T Consensus 369 ~~~~----------~~~~~~Lrp~~~-~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E--------~~~~---l~Gl~Rv 426 (686)
T PLN02908 369 VFEI----------EKQEFGLKPMNC-PGHCLMFAHRVRSYRELPLRLADFGVLHRNE--------LSGA---LTGLTRV 426 (686)
T ss_pred EEec----------CCeeEEEcCCCc-HHHHHHHhccccChhhCCHhHEEeeccccCC--------CCcC---CcCcccc
Confidence 8742 135689999997 9999999999998889999999988888776 3443 9999999
Q ss_pred hccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCC
Q psy10095 441 IQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPA 487 (680)
Q Consensus 441 HQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~t 487 (680)
|||+++|+++|| +|++++++++++++.+.++|+.||++|++. +.+
T Consensus 427 ReF~q~d~~if~-~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~-ls~ 471 (686)
T PLN02908 427 RRFQQDDAHIFC-REDQIKDEVKGVLDFLDYVYEVFGFTYELK-LST 471 (686)
T ss_pred ccEEEeeEEEEc-CHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-EeC
Confidence 999999999999 999999999999999999999999999973 444
No 24
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.89 E-value=6.8e-23 Score=228.72 Aligned_cols=215 Identities=8% Similarity=-0.010 Sum_probs=186.7
Q ss_pred hhhhhcCCccccc-CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhc-CCCCCCCCceEeecC
Q psy10095 288 IDMDALSKYVQYT-NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYG-DHYLSPHDNMVLVNN 365 (680)
Q Consensus 288 ~elg~~l~l~D~~-~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G-~~p~~~~~~~~i~~~ 365 (680)
.+|..+.||+|+. .++++++.-.|..+-..|.+++.+ ...+.||.+|.+|.|+..++++++| ..+.|.+++|.+...
T Consensus 13 ~~l~~~~~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~-~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~ 91 (472)
T TIGR00408 13 HQILEKAEIIDYYPVKGCYVWLPYGFKIWKNIQKILRN-ILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHG 91 (472)
T ss_pred HHHHHHcCCccccCCCceEEECcCHHHHHHHHHHHHHH-HHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecC
Confidence 4788899999994 578999999999998888887775 4566899999999999999999976 688888888988742
Q ss_pred CCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce
Q psy10095 366 ENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK 445 (680)
Q Consensus 366 ~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K 445 (680)
+.+ .-+++++|.||+| ++++.+|.+.+....+||+++..+++|||.|. +.++||+|+|+|.+
T Consensus 92 g~~-----~~~e~l~LrPt~e-~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~------------~~~~gl~R~rEF~~ 153 (472)
T TIGR00408 92 GLS-----KLDEPLALRPTSE-TAMYPMFKKWVKSYTDLPLKINQWVNVFRYET------------KHTRPFLRTREFTW 153 (472)
T ss_pred CCC-----ccCCcEEEeCCCc-HHHHHHHhccccChhhcCHHHhheeeeecCCC------------CCCCCcceeeeeeh
Confidence 211 0125799999987 89999999999988999999999888888872 34799999999999
Q ss_pred EEE-EEecCChhHHHHHHHHHHHHHHHHHH-HcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 446 VNL-FVGTNNHENLCKEFQNIQSLLKSVMD-KLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 446 VE~-f~~~~~pe~S~~~~eeml~~~e~il~-~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
.|+ +++| +++++.+++++|++...+||+ .|||||+++..|..|..+.+..++|||+|||. +++.||+++.++...+
T Consensus 154 ~e~h~~~~-~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~ 231 (472)
T TIGR00408 154 QEAHTAHA-TAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNF 231 (472)
T ss_pred hhhhhhhC-CHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccc
Confidence 999 5788 999999999999999999998 99999999999999999999999999999999 5899999999886543
No 25
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.88 E-value=2e-22 Score=228.82 Aligned_cols=184 Identities=10% Similarity=0.106 Sum_probs=165.7
Q ss_pred CCChhhhhhcCCccccc---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 284 GKNKIDMDALSKYVQYT---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
.++|.+||.++|||||. +++++++.+.|+.+.++|.+++.+.+ .+.||++|.+|.|.+.+++..+|+.+.+.+++|
T Consensus 169 ~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy 247 (563)
T TIGR00418 169 KRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQ-IKYGYMEVETPIMYDLELWEISGHWDNYKERMF 247 (563)
T ss_pred cCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCcccchhhcc
Confidence 47999999999999998 68999999999999999999999877 568999999999999999999999999999999
Q ss_pred EeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhh
Q psy10095 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNS 440 (680)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~Rv 440 (680)
.+... +++.++|-||++ ++++.+|.+......+||+|++.+|+|||.|+ + | +++||+|+
T Consensus 248 ~~~d~---------~~~~~~LrP~~~-~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~--------~--g-~~~Gl~R~ 306 (563)
T TIGR00418 248 PFTEL---------DNREFMLKPMNC-PGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQ--------S--G-ELHGLMRV 306 (563)
T ss_pred eeccC---------CCceEEEecCCC-HHHHHHHhCcCCChHHCCceeeEeccccCCCC--------C--c-CCcCcccc
Confidence 87631 235789999987 89999999999888899999999887777763 3 3 69999999
Q ss_pred hccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCC
Q psy10095 441 IQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVL 490 (680)
Q Consensus 441 HQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdL 490 (680)
|||+++|+.++| .++++++++++++..+.++|+.||||+++|.++++|.
T Consensus 307 reF~q~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~ 355 (563)
T TIGR00418 307 RGFTQDDAHIFC-TEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDP 355 (563)
T ss_pred cceEEeeeEEEc-CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCh
Confidence 999999999999 6999999999999999999999999999999998754
No 26
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=1.7e-22 Score=230.11 Aligned_cols=209 Identities=8% Similarity=0.060 Sum_probs=182.1
Q ss_pred CCChhhhhhcCCccccc---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 284 GKNKIDMDALSKYVQYT---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
.+||..||++++||++. +++++++.+.++.+.++|.+|+.+.+ .+.||.+|.||.|.+.+++.++|..+.+.+++|
T Consensus 175 ~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~-~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my 253 (575)
T PRK12305 175 KRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEH-LKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMF 253 (575)
T ss_pred hccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCCcccchhhcc
Confidence 37999999999999975 67999999999999999999999877 568999999999999999999999888888888
Q ss_pred EeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhh
Q psy10095 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNS 440 (680)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~Rv 440 (680)
.+... ++..++|-|+++ .+++.++.+......+||+|++.+|+|||.|+ +. ..+||+|+
T Consensus 254 ~~~d~---------~~~~~~LRP~~~-~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~--------~~---~~~Gl~R~ 312 (575)
T PRK12305 254 PPMEI---------DEEEYYLKPMNC-PGHILIYKSRLRSYRDLPLRLAEFGTVYRYEK--------SG---VLHGLTRV 312 (575)
T ss_pred ccccc---------CCceEEEecCCC-HHHHHHHhcccCChhhCCHhhEEecccccCCC--------CC---CCcCcccc
Confidence 87531 235689999886 77889998887766789999999888888873 22 68999999
Q ss_pred hccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccce--eeeeeecCCCceeeeeecCc
Q psy10095 441 IQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL--EYQVYSYSLNSWVTCMDLNA 518 (680)
Q Consensus 441 HQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kky--DIEvW~P~~~~Y~EisS~Sn 518 (680)
|||+++++.+|| .++++.+++.+++..+.++|+.||++...+.+++.++ .+| |.|+|.+.++.+.++.+.++
T Consensus 313 reF~q~~~~if~-~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~-----~~~~g~~~~~~~~~~~l~~~l~~~g 386 (575)
T PRK12305 313 RGFTQDDAHIFC-TPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREP-----EKYVGDDEVWEKATEALREALEELG 386 (575)
T ss_pred cCeEEcceEEEe-CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCh-----hhccCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999 8999999999999999999999999977788999886 556 88899998888888777665
Q ss_pred ch
Q psy10095 519 KV 520 (680)
Q Consensus 519 ~~ 520 (680)
..
T Consensus 387 ~~ 388 (575)
T PRK12305 387 LE 388 (575)
T ss_pred CC
Confidence 43
No 27
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.86 E-value=3.5e-21 Score=217.93 Aligned_cols=210 Identities=11% Similarity=0.147 Sum_probs=167.5
Q ss_pred CCCChhhhhhcCCccccc---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCc
Q psy10095 283 EGKNKIDMDALSKYVQYT---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDN 359 (680)
Q Consensus 283 ~~~~H~elg~~l~l~D~~---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~ 359 (680)
..+||..||++++||+|. +++++++.+.|+.|.++|.+|+.+.+. ++||.+|.+|.|.+.+++..+|..+.+.+++
T Consensus 136 ~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~-~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~m 214 (545)
T PRK14799 136 EETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREIND-SMGYQEVYTSHVFKTDIWKISGHYTLYRDKL 214 (545)
T ss_pred ccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHH-HcCCeEEECCccchHHHHhhccccccchhhc
Confidence 459999999999999996 689999999999999999999998775 5899999999999999999999999999988
Q ss_pred eEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchh
Q psy10095 360 MVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN 439 (680)
Q Consensus 360 ~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~R 439 (680)
|.+.. .+.+++|.||++ +|++.+|.+......+||+|++.+|+|||.|+ + .+++||+|
T Consensus 215 f~~~~----------~~e~~~LrPm~c-p~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~--------s---g~l~GL~R 272 (545)
T PRK14799 215 IVFNM----------EGDEYGVKPMNC-PAHILIYKSKPRTYRDLPIRFSEFGHVYRWEK--------K---GELYGLLR 272 (545)
T ss_pred ceeec----------cCceEEeccCCC-HHHHHHHhccccChhhCCHhhEEecceecCCC--------C---CCcccccc
Confidence 87642 135689999987 99999999999888899999999888888873 3 38999999
Q ss_pred hhccceEEEEEecCChhHHHHHHHHHHHH---------------------------------------HHHHHHHcCCce
Q psy10095 440 SIQREKVNLFVGTNNHENLCKEFQNIQSL---------------------------------------LKSVMDKLNMKY 480 (680)
Q Consensus 440 vHQF~KVE~f~~~~~pe~S~~~~eeml~~---------------------------------------~e~il~~L~Lpy 480 (680)
+|||++-+.=.|| +++++.++..+++.. .+++|+++||||
T Consensus 273 vReF~Q~DaHif~-~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~ 351 (545)
T PRK14799 273 VRGFVQDDGHIFL-REDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKF 351 (545)
T ss_pred ceeEEEcccEEEe-CHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCe
Confidence 9999995555556 555554444444444 444555555555
Q ss_pred EEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 481 RICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 481 RVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
++....... ..-|+|+++ .++.+++.+++++. +++|
T Consensus 352 ~~~~g~gaf----ygpkiD~~v-~dalgr~~q~~Tiq--ldf~ 387 (545)
T PRK14799 352 GIKEKEGAF----YGPKIDFEI-RDSLGRWWQLSTIQ--VDFN 387 (545)
T ss_pred EEecceecc----ccCccceEe-hhhcCchhhhhhhh--hhcC
Confidence 554432222 224889999 89999999999887 4444
No 28
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=3.8e-21 Score=221.79 Aligned_cols=176 Identities=9% Similarity=0.101 Sum_probs=152.8
Q ss_pred CCCChhhhhhcCCccccc--CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 283 EGKNKIDMDALSKYVQYT--NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 283 ~~~~H~elg~~l~l~D~~--~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
..++|.+||+.++||+|. .++++++...|..+-+.|.+|+.+.+. +.||++|.+|.|++.+++.++|+.+.+.+++|
T Consensus 243 ~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~-~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy 321 (639)
T PRK12444 243 AKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQK-EYNYQEVRTPFMMNQELWERSGHWDHYKDNMY 321 (639)
T ss_pred ccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhcCChhhhhhhcC
Confidence 347999999999999985 456777777777777889999998764 58999999999999999999999999988888
Q ss_pred EeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhh
Q psy10095 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNS 440 (680)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~Rv 440 (680)
.++. +++.++|.||++ ++++.+|.+.+....+||+|++.+|+|||.|+ .. .++||+|+
T Consensus 322 ~~d~----------~~~~~~LrP~~~-~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~--------~~---~~~Gl~R~ 379 (639)
T PRK12444 322 FSEV----------DNKSFALKPMNC-PGHMLMFKNKLHSYRELPIRMCEFGQVHRHEF--------SG---ALNGLLRV 379 (639)
T ss_pred eecC----------CCcEEEEccCCC-HHHHHHHhCcccChhhCCceeEEeccccCCCC--------Cc---CCcCccee
Confidence 4331 134678999997 89999999998887899999999888887763 22 29999999
Q ss_pred hccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEE
Q psy10095 441 IQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRI 482 (680)
Q Consensus 441 HQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRV 482 (680)
|||+++|+.++| +++++++++++++..+.++|+.|||||++
T Consensus 380 reF~q~d~~~f~-~~~~~~~e~~~~~~~~~~i~~~lgl~~~~ 420 (639)
T PRK12444 380 RTFCQDDAHLFV-TPDQIEDEIKSVMAQIDYVYKTFGFEYEV 420 (639)
T ss_pred eeeEEccEEEEC-CHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 999999999999 89999999999999999999999999996
No 29
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.78 E-value=1.9e-18 Score=191.63 Aligned_cols=191 Identities=9% Similarity=0.006 Sum_probs=168.2
Q ss_pred CCChhhhhhcCCcccccCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEee
Q psy10095 284 GKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLV 363 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~ 363 (680)
..+|--|... |+++..++++|++...|+++.++|.+|+.+.+ .+.||++|.+|.|.+.+++..+|..+.+.+++|.+.
T Consensus 20 ~~~~~ll~r~-g~~~~~~~G~~~~lP~g~~i~~~i~~~i~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~ 97 (439)
T PRK12325 20 IVSHRLMLRA-GMIRQQAAGIYSWLPLGLKVLKKIENIVREEQ-NRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK 97 (439)
T ss_pred hHHHHHHHHc-CCccccCCceEEECCcHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhheEEe
Confidence 3678766554 99988899999999999999999999999765 568999999999999999999999999999999886
Q ss_pred cCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhcc
Q psy10095 364 NNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQR 443 (680)
Q Consensus 364 ~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF 443 (680)
+. .+++++|.||.| ...++++++.+....+||+++.-+|+|||.|. .+ ..||+|++||
T Consensus 98 d~---------~~~~~~L~Pt~e-~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~----------~~--~~GL~R~reF 155 (439)
T PRK12325 98 DR---------HDREMLYGPTNE-EMITDIFRSYVKSYKDLPLNLYHIQWKFRDEI----------RP--RFGVMRGREF 155 (439)
T ss_pred cC---------CCCEEEEcCCCc-HHHHHHHHHHhhhchhhchHheEecCEecCCC----------CC--CCCccccceE
Confidence 31 135689999987 68999999999988999999999888888872 23 5799999999
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccce
Q psy10095 444 EKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRL 498 (680)
Q Consensus 444 ~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kky 498 (680)
++-|+..+|.+.+++.+.+++|++...++|+.|||+|..|.++++.+|-..+..|
T Consensus 156 ~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef 210 (439)
T PRK12325 156 LMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEF 210 (439)
T ss_pred eEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceee
Confidence 9999999975789999999999999999999999999999999999887766655
No 30
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=99.74 E-value=1.2e-17 Score=151.42 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=94.9
Q ss_pred ccchHHhhcCHHHHHHHHHhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q psy10095 153 SYDVKHVLENEDLIVNQLKQRR-IDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLE 231 (680)
Q Consensus 153 mLD~k~i~~n~e~v~~~l~~R~-~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~ 231 (680)
|||+++|++|||.|++++++|+ ...++|.|+++|++||+++.+++.|+++||++|++|+.+++++. +.++++++
T Consensus 1 MLDik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~-----~~~~l~~e 75 (108)
T PF02403_consen 1 MLDIKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGE-----DAEELKAE 75 (108)
T ss_dssp --SHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTC-----CTHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcc-----cHHHHHHH
Confidence 8999999999999999999997 44568999999999999999999999999999999999877652 46889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy10095 232 RKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYL 264 (680)
Q Consensus 232 ~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~ 264 (680)
++.++++|+.+++++.++++++..+++.|||+|
T Consensus 76 ~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNip 108 (108)
T PF02403_consen 76 VKELKEEIKELEEQLKELEEELNELLLSIPNIP 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999997
No 31
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.68 E-value=2.9e-16 Score=181.12 Aligned_cols=188 Identities=9% Similarity=0.113 Sum_probs=156.2
Q ss_pred CCChhhhhhcCCcccccC--cceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceE
Q psy10095 284 GKNKIDMDALSKYVQYTN--RLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMV 361 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~~--srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~ 361 (680)
.++|.+||+++++++|.. ++++++.+.++.+.++|.+++.+.+ .+.||.+|.||.|...+++.++|......+++|.
T Consensus 240 ~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~-~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~ 318 (638)
T PRK00413 240 KRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKL-RKAGYQEVKTPQILDRELWETSGHWDHYRENMFP 318 (638)
T ss_pred cccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHH-HHCCCEEEECCeeCCHHHHHhcCChhhhhhccce
Confidence 479999999999999974 6899999999999999999999877 4689999999999999999999976666777887
Q ss_pred eecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhh
Q psy10095 362 LVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSI 441 (680)
Q Consensus 362 i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvH 441 (680)
+... ++..+.|-|++. .+++-++........+||+|++.+|+|||.|+ .+ ..+||+|+|
T Consensus 319 ~~d~---------~~~~~~LRP~~~-~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~--------~~---~~~Gl~R~r 377 (638)
T PRK00413 319 TTES---------DGEEYALKPMNC-PGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEP--------SG---ALHGLMRVR 377 (638)
T ss_pred eecC---------CCcEEEEecCCc-HHHHHHHhCcCCChhhCCceeeeccCeecCCC--------CC---CCcCcceee
Confidence 7531 235689999876 67788888877665789999999888888873 32 378999999
Q ss_pred ccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCC-ceEE--eecCCCCCCccc
Q psy10095 442 QREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNM-KYRI--CKAPADVLHTSE 494 (680)
Q Consensus 442 QF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~L-pyRV--v~m~tgdLg~~a 494 (680)
||+++++..|| .++++.+.+.+++..+.++|+.||+ +|++ -..+.+.+|...
T Consensus 378 eF~q~~~~~~g-~~~~~~~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~ 432 (638)
T PRK00413 378 GFTQDDAHIFC-TPEQIEEEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDE 432 (638)
T ss_pred eeEEeeEEEEc-CHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHH
Confidence 99999999999 8888888999999999999999999 4644 333334566654
No 32
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.68 E-value=2.3e-16 Score=175.83 Aligned_cols=209 Identities=11% Similarity=0.028 Sum_probs=171.0
Q ss_pred cceEEEeCchHHHHHHHHHHHHHHHHhh-CCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCC---------Cc---
Q psy10095 302 RLDIHYLGNAAKFEYLIPIILKDYFTVK-HNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNE---------ND--- 368 (680)
Q Consensus 302 srfyyL~G~gA~LE~ALi~y~ld~~~~~-~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~---------~~--- 368 (680)
++||.+-=.|+.|-+.|++|..+.+... .||.+|.+|.|++..+.+++|....|.+.+|.....+ ++
T Consensus 28 ~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~~~ 107 (456)
T PRK04173 28 AGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVECKKCKKRYRADHLIEELGI 107 (456)
T ss_pred hcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeEeCCCCCEeechhhhHHHhh
Confidence 6899999999999999999999877653 6999999999999999999999999999988763111 00
Q ss_pred ------------------cccc---c---------------------ccCCCceeeccchhhhhhhhhcccccCCCCCCc
Q psy10095 369 ------------------LSEI---G---------------------YEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPV 406 (680)
Q Consensus 369 ------------------~~~~---~---------------------~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPl 406 (680)
+.-| + .+....||-|+++...+++|-...-..-.+||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dLPl 187 (456)
T PRK04173 108 DAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKLPF 187 (456)
T ss_pred hhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccCCe
Confidence 0001 0 112346777766556777754433333349999
Q ss_pred eEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCc---eEEe
Q psy10095 407 KYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK---YRIC 483 (680)
Q Consensus 407 Ky~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~Lp---yRVv 483 (680)
+++-+|+|||.|+ | | ..||+||++|++.|+-+|| +|+++.+++..+++...++|..||++ +|+-
T Consensus 188 r~aq~g~~~RnE~---------s-~--~~gL~RvReF~q~e~hiF~-~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s 254 (456)
T PRK04173 188 GIAQIGKSFRNEI---------T-P--RNFIFRTREFEQMELEFFV-KPGTDNEWFAYWIELRKNWLLDLGIDPENLRFR 254 (456)
T ss_pred eeeEEchhHhCcc---------C-C--CCCceeeceeeeeEEEEEE-CcChHHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 9999999998873 3 3 3799999999999999999 99999999999999999999999998 8888
Q ss_pred ecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 484 KAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 484 ~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
..+.++|...+...+|+|+++|....|.|++++.+.++++
T Consensus 255 ~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dyd 294 (456)
T PRK04173 255 EHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYD 294 (456)
T ss_pred ecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhh
Confidence 8888889888999999999999777899999988887776
No 33
>KOG3408|consensus
Probab=99.66 E-value=3.7e-17 Score=149.38 Aligned_cols=72 Identities=35% Similarity=0.505 Sum_probs=59.8
Q ss_pred hcccccccC-CCC--CCCc---cccccCCccccccCCCCccceecc---------------------------CCCCChH
Q psy10095 595 IRGTRKRAR-GLG--CEDG---AELNMKDSLDANLVQMSTNYCLVL---------------------------RKPYTVE 641 (680)
Q Consensus 595 ~~g~r~~~R-~v~--~~D~---~~~~l~~~~d~~~pg~g~~yc~~c---------------------------~~pyt~~ 641 (680)
+.-+|-+.| ++| -+|+ .++.++|++|+||||+|||||++| ++||||+
T Consensus 18 ~~r~r~~~r~dLDqi~~dl~~~~~kll~~~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~PySQe 97 (129)
T KOG3408|consen 18 INRTRGRARKDLDQIDEDLETQKGKLLNQEIDPDLPGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREVPYSQE 97 (129)
T ss_pred HHhhhccCcccccccccccccccchhhcCcCCCCCCCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccCCccHH
Confidence 344555555 566 2342 234579999999999999999999 9999999
Q ss_pred HHHHhhcCCcccCcccccccccchhh
Q psy10095 642 ESERAAGYGSYQTPKIRKLQTQSLDK 667 (680)
Q Consensus 642 ~ae~a~g~~~~~~~~~~~~~~~~~~~ 667 (680)
|||+|+|+| +.+|++.+++|+.+++
T Consensus 98 eAe~A~G~g-~vpp~~~~~~s~l~~~ 122 (129)
T KOG3408|consen 98 EAEAAAGMG-FVPPKKLKVESELSKE 122 (129)
T ss_pred HHHHhccCC-cCCCcchhhhhhcccC
Confidence 999999999 8999999999999988
No 34
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.39 E-value=3.6e-13 Score=139.51 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=154.0
Q ss_pred hhhhcCCccccc------CcceEEEeCchHHHHHHHHHHHHHHHHhhCC--cEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 289 DMDALSKYVQYT------NRLDIHYLGNAAKFEYLIPIILKDYFTVKHN--FMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 289 elg~~l~l~D~~------~srfyyL~G~gA~LE~ALi~y~ld~~~~~~G--f~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
+|+.+.|++--. -++++.+...|+.|.+.|.++..+.+.. .| |.+|.+|.|....++.- ..-|.+
T Consensus 3 ~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~-~g~~~~~i~tP~i~~~~mf~~-~~g~~d----- 75 (254)
T cd00774 3 ELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVL-EEEDMLEIDSPIITPELMFKT-SIGPVE----- 75 (254)
T ss_pred hHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHh-cCCCeEEEeccccCCHHHhee-eecccC-----
Confidence 566666665433 2689999999999999999999987754 64 99999999999943332 111110
Q ss_pred EeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhh
Q psy10095 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNS 440 (680)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~Rv 440 (680)
+.+...+|-|.+.+..++++.+.......+||++++-+|+|||.|. + ++ .||.|+
T Consensus 76 -------------~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~---------~-~~--~gl~R~ 130 (254)
T cd00774 76 -------------SGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEI---------S-PR--NGLFRV 130 (254)
T ss_pred -------------CCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhcccc---------C-cc--cceeee
Confidence 1123578888554333444433322233599999999999999972 2 33 899999
Q ss_pred hccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcC---CceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecC
Q psy10095 441 IQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLN---MKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLN 517 (680)
Q Consensus 441 HQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~---LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~S 517 (680)
.+|+..++-.|| +|+++...++.+++....+|..+| -++|+...++.+++.-+...+|+|+.+|. .|.|+..++
T Consensus 131 ReF~q~d~~~f~-~~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~~--~w~e~~Gi~ 207 (254)
T cd00774 131 REFTQAEIEFFV-DPEKSHPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFPH--GFLELEGIA 207 (254)
T ss_pred ccchhhheeeeE-CCCCchHHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHhh--hHHHHcCCC
Confidence 999999999999 999999999999999999999999 55799999999999999999999999974 688988888
Q ss_pred cchhh
Q psy10095 518 AKVYI 522 (680)
Q Consensus 518 n~~~~ 522 (680)
+....
T Consensus 208 ~~~~~ 212 (254)
T cd00774 208 NRGDR 212 (254)
T ss_pred cchhH
Confidence 66533
No 35
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=99.35 E-value=1.7e-13 Score=122.93 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=36.5
Q ss_pred CCccccccCCCCccceecc---------------------------CCCCChHHHHHhhcCCcccCccccc
Q psy10095 616 KDSLDANLVQMSTNYCLVL---------------------------RKPYTVEESERAAGYGSYQTPKIRK 659 (680)
Q Consensus 616 ~~~~d~~~pg~g~~yc~~c---------------------------~~pyt~~~ae~a~g~~~~~~~~~~~ 659 (680)
+.|+|++|||+|||||++| +.||||++||+|+|+. .+|.+..
T Consensus 43 Klp~Dp~lPGlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRevpytQe~aeaAvg~~--vg~~kes 111 (126)
T COG5112 43 KLPYDPELPGLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREVPYTQEDAEAAVGLT--VGPEKES 111 (126)
T ss_pred cCCCCCCCCCCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcCcchhHHHHHHhccc--cCCcchh
Confidence 5699999999999999999 9999999999999987 4444433
No 36
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.32 E-value=2.4e-11 Score=118.94 Aligned_cols=175 Identities=12% Similarity=0.116 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcc
Q psy10095 317 LIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTN 396 (680)
Q Consensus 317 ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~ 396 (680)
.+.+...+.+ ...||.++.+|.|+........|..+ ....+.+. ..++..+|-+|.. .+++.....
T Consensus 4 ~~~~~~r~~l-~~~Gf~Ev~t~~l~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~LR~s~~-~~l~~~~~~ 69 (211)
T cd00768 4 KIEQKLRRFM-AELGFQEVETPIVEREPLLEKAGHEP----KDLLPVGA--------ENEEDLYLRPTLE-PGLVRLFVS 69 (211)
T ss_pred HHHHHHHHHH-HHcCCEEeEcceecHHHHHHHcCccH----hheeeeec--------CCCCEEEECCCCc-HHHHHHHHh
Confidence 3444545444 45799999999999999998888653 22333321 1124568887764 788888777
Q ss_pred cccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHc
Q psy10095 397 HSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKL 476 (680)
Q Consensus 397 e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L 476 (680)
.. ..+|+|++-+|+|||.|. ...++.|+++|.+++...+. .+.+....|.+++..+++++..|
T Consensus 70 n~---~~~~~~lfeig~vfr~e~-------------~~~~~~~~~ef~~l~~~~~g-~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 70 HI---RKLPLRLAEIGPAFRNEG-------------GRRGLRRVREFTQLEGEVFG-EDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred hc---ccCCEEEEEEcceeecCC-------------CccccccceeEEEcCEEEEc-CCchhHHHHHHHHHHHHHHHHHc
Confidence 65 688999999999999862 12236788999999999988 44444456999999999999999
Q ss_pred CC--ceEEeecCCCCCC-cccccceeeeeeecCCCceeeeeecCcchhhh
Q psy10095 477 NM--KYRICKAPADVLH-TSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 477 ~L--pyRVv~m~tgdLg-~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q 523 (680)
|+ +++++........ ....+++||++|+|. +++.||+++......+
T Consensus 133 g~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~eig~~g~~~~~~ 181 (211)
T cd00768 133 GIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPE-GRGLEIGSGGYRQDEQ 181 (211)
T ss_pred CCCcceEEEecCchhhccccCCceEEEEEEccC-CCeEEEeeceeecCch
Confidence 97 6777644444444 278899999999998 4678999999775443
No 37
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=8.2e-10 Score=126.30 Aligned_cols=179 Identities=11% Similarity=0.130 Sum_probs=152.1
Q ss_pred CCCChhhhhhcCCccccc---CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCc
Q psy10095 283 EGKNKIDMDALSKYVQYT---NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDN 359 (680)
Q Consensus 283 ~~~~H~elg~~l~l~D~~---~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~ 359 (680)
..+||..||+.++++.|. +++.+++.-.|+.+...|.+|+...+.. .||.+|.+|.|++.+..+-.|....+.+++
T Consensus 188 ~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~~-~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~m 266 (589)
T COG0441 188 KKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRTKLRS-YGYQEVKTPVLADLELWELSGHWDNYKEDM 266 (589)
T ss_pred cCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHHHHHh-cCceEecCCeeeecccchhccchhhccccc
Confidence 358999999999999998 6889999999999999999999987754 799999999999999999999999999999
Q ss_pred eEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchh
Q psy10095 360 MVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN 439 (680)
Q Consensus 360 ~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~R 439 (680)
|..... +..+.|=+.+- ..-+-+|.+..-...+||+|+.-+|.|||.|. . ....||.|
T Consensus 267 f~~~~~----------~~~~~lKpmNC-pgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~----------S-Gal~GL~R 324 (589)
T COG0441 267 FLTESD----------DREYALKPMNC-PGHILIFKSGLRSYRELPLRLAEFGYVYRYEK----------S-GALHGLMR 324 (589)
T ss_pred eeeccC----------ChhheeeeccC-HhHHHHHhcCCcceeccchhhhhcceeecccC----------c-chhhcccc
Confidence 887741 12455555443 23344677777788999999999999999984 2 24778999
Q ss_pred hhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCc-eEEeec
Q psy10095 440 SIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK-YRICKA 485 (680)
Q Consensus 440 vHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~Lp-yRVv~m 485 (680)
|.-|+.=.+=.+| .+++...++-..+.....+++.+|+. |++-.-
T Consensus 325 vR~ftqdDaHifc-~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls 370 (589)
T COG0441 325 VRGFTQDDAHIFC-TPDQIKDEFKGILELILEVYKDFGFTDYEVKLS 370 (589)
T ss_pred ccceeecccceec-cHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 9999999999999 79999999999999999999999998 776543
No 38
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.5e-08 Score=112.48 Aligned_cols=198 Identities=10% Similarity=0.030 Sum_probs=171.1
Q ss_pred CCCChhhhhhcCCcccccCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEe
Q psy10095 283 EGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVL 362 (680)
Q Consensus 283 ~~~~H~elg~~l~l~D~~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i 362 (680)
+.-+|. |..+-|++|...++.|.+.=.|-++-+.+.+..-+.+ .+.|-.++.-|.|+-++....+|..-.|..+.|.+
T Consensus 19 ~~~sh~-ll~rAg~i~~~~~G~y~~lP~g~rv~~kI~~iir~em-~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v 96 (500)
T COG0442 19 SEWSHQ-LLLRAGMIRKPVKGLYVWLPLGLRVLEKIENIIREEM-DKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRV 96 (500)
T ss_pred HHHHHH-HHHhcCceecccCceEEECccHHHHHHHHHHHHHHHH-HhcCceEEechhcCHHHHHHHhChhhhcchhhEEE
Confidence 345565 6677899999889999999999999999988877554 66899999999999999999999888888888888
Q ss_pred ecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhc
Q psy10095 363 VNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQ 442 (680)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQ 442 (680)
.. .+++++.|-||+| ..++.|+++.+-...+|||++.=+.+-||-|. +-++||+|...
T Consensus 97 ~d---------rg~~~l~L~PTsE-e~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~------------rpr~gllR~RE 154 (500)
T COG0442 97 KD---------RGDRPLALRPTSE-EVITDMFRKWIRSYKDLPLKLYQIQSKFRDEK------------RPRFGLLRGRE 154 (500)
T ss_pred Ec---------cCCceeeeCCCcH-HHHHHHHHHHhhhhhhCCcceeeeeeEEeccc------------cCCCCccchhe
Confidence 74 1245789999987 57999999999999999999999999999983 56999999999
Q ss_pred cceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecC
Q psy10095 443 REKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYS 506 (680)
Q Consensus 443 F~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~ 506 (680)
|..=|-..+-.+.|++++.+++|++....||..|||.|+.+.--+|-.|. ..++-++|.||.
T Consensus 155 F~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg--~~S~eF~~l~pd 216 (500)
T COG0442 155 FLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGG--SYSHEFEALMPD 216 (500)
T ss_pred eeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEeecccCCCCCC--ccceEEEEEccC
Confidence 99989888877899999999999999999998888888888777777775 556778899983
No 39
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=98.84 E-value=1.8e-08 Score=111.30 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=103.8
Q ss_pred eCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCC--CCCCceEeecCCCccccccccCCCceeeccc
Q psy10095 308 LGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYL--SPHDNMVLVNNENDLSEIGYEERRNHLVGSA 385 (680)
Q Consensus 308 ~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~--~~~~~~~i~~~~~~~~~~~~~~~~l~LigTa 385 (680)
.++++.|+.+|.+|+.+ .||++|.+|.|++.+.++..|..+. ..+.+|+++ +.++|-++.
T Consensus 203 ~~~~s~Le~aIR~~f~~-----~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id-------------eel~LRpsL 264 (417)
T PRK09537 203 EDYLGKLERDITKFFVD-----RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD-------------KNFCLRPML 264 (417)
T ss_pred CCHHHHHHHHHHHHHHH-----CCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC-------------CceEehhhh
Confidence 35689999999999985 5999999999999999999886432 123344432 246888765
Q ss_pred hhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHH
Q psy10095 386 HMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNI 465 (680)
Q Consensus 386 eevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eem 465 (680)
. .+|+.++++. -....+|+|++.+|+|||.|+ .|. -+.++|.+++...+ .+...|+++
T Consensus 265 t-PsLlr~la~n-~k~~~~P~RIFEIG~VFR~E~----------~g~-----~hlrEf~Ql~~~ii-----Gs~~~f~dL 322 (417)
T PRK09537 265 A-PGLYNYLRKL-DRILPDPIKIFEIGPCYRKES----------DGK-----EHLEEFTMVNFCQM-----GSGCTRENL 322 (417)
T ss_pred H-HHHHHHHHhh-hhcccCCeeEEEEeceEecCC----------CCC-----CCcceEEEEEEEEe-----CCchHHHHH
Confidence 4 6777766532 112467999999999999962 121 14556655544433 244678899
Q ss_pred HHHHHHHHHHcCCceEEeecCCCCCCcccccceee
Q psy10095 466 QSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEY 500 (680)
Q Consensus 466 l~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDI 500 (680)
...++++|+.|||+|++. ..+ .+..-++.||
T Consensus 323 ~~lleeLL~~LGI~f~i~---s~~-~fi~GR~adI 353 (417)
T PRK09537 323 ENIIDDFLKHLGIDYEII---GDN-CMVYGDTIDI 353 (417)
T ss_pred HHHHHHHHHHCCCCcEEe---cCC-cceecCeEEE
Confidence 999999999999999998 333 4444455554
No 40
>KOG2324|consensus
Probab=98.74 E-value=1.4e-07 Score=101.17 Aligned_cols=208 Identities=11% Similarity=0.031 Sum_probs=167.8
Q ss_pred hhhhhcCCcccccCcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCC
Q psy10095 288 IDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNEN 367 (680)
Q Consensus 288 ~elg~~l~l~D~~~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~ 367 (680)
-+|....|+|.-..+++|-|.-.|.+----|++. +|.-++.-|=..|+.|.+--.++.++||-.-...-+.|.+-+
T Consensus 28 q~LL~e~GfI~ps~~G~yq~LPlg~R~~~K~~~~-l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~D--- 103 (457)
T KOG2324|consen 28 QELLQEVGFIRPSSPGLYQLLPLGLRVLNKLCRL-LDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHD--- 103 (457)
T ss_pred HHHHHHhCccccCCCCceeeccchHHHHHHHHHH-HHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeec---
Confidence 3566677888888889999999999887777775 444456679999999999999999999976665556676652
Q ss_pred ccccccccCCCceeeccchhhhhhhhhccccc-CCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceE
Q psy10095 368 DLSEIGYEERRNHLVGSAHMSMFCAYHTNHSV-NVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKV 446 (680)
Q Consensus 368 ~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l-~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KV 446 (680)
.++..+||.||.|| .++++.+..+= ..++|||++.-+|+-||-|- +---||.|-.||-.=
T Consensus 104 ------r~gkq~cL~pThEE-~iT~lmat~~~lsykqlPi~vYQigrKfRDEl------------rpRfGLlRgREFlMK 164 (457)
T KOG2324|consen 104 ------RKGKQMCLTPTHEE-DITALMATYIPLSYKQLPIRVYQIGRKFRDEL------------RPRFGLLRGREFLMK 164 (457)
T ss_pred ------cCCCEeccCCchHH-HHHHHHHhcCccccccCcEEeeeechhhhhcc------------CccccchhhHHHHHh
Confidence 23567999999984 78888877664 78999999999999999972 233479999999999
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhh
Q psy10095 447 NLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYI 522 (680)
Q Consensus 447 E~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~ 522 (680)
.|+.|..++|.|.+-|+.+.+....||.+||+||--|...+|++|-.-++-|-+ ++.-.=--+.+|++|.|.
T Consensus 165 DmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl----~~~vgED~l~~C~~C~~s 236 (457)
T KOG2324|consen 165 DMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHL----IHPVGEDTLMSCPSCGYS 236 (457)
T ss_pred hhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEec----cCccCccceeecCcCCcc
Confidence 999999889999999999999999999999999999999999999888776643 222222236677777644
No 41
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.70 E-value=1e-07 Score=98.83 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhh
Q psy10095 312 AKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFC 391 (680)
Q Consensus 312 A~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~ 391 (680)
+.+..+|.+...+.+ .++||.+|.||.|...+++.+.| .+...+++|.+.+. ++..+.|-|... +|++
T Consensus 2 ~~~~~~l~~~l~~~f-~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~---------~g~~l~LRpd~T-~~ia 69 (261)
T cd00773 2 AALRRYIEDTLREVF-ERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDK---------GGRDLALRPDLT-APVA 69 (261)
T ss_pred hHHHHHHHHHHHHHH-HHcCCEEeeccceeeHHHhcccc-cccccceEEEEECC---------CCCEEEeCCCCc-HHHH
Confidence 456788888888655 67899999999999999999886 44455667887631 235688999876 8999
Q ss_pred hhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHH
Q psy10095 392 AYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKS 471 (680)
Q Consensus 392 ~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~ 471 (680)
-+++..... ..+|+|++.+|+|||.|. ++ .|-+|.+....+|+|+.. +. .+ --|++..+.+
T Consensus 70 R~~a~~~~~-~~~p~k~~y~g~vfR~e~--------~~-----~g~~re~~Q~g~Eiig~~-~~-~~---daE~i~l~~~ 130 (261)
T cd00773 70 RAVAENLLS-LPLPLKLYYIGPVFRYER--------PQ-----KGRYREFYQVGVEIIGSD-SP-LA---DAEVIALAVE 130 (261)
T ss_pred HHHHhcCcc-CCCCeEEEEEcCEEecCC--------CC-----CCCccceEEeceeeeCCC-Ch-HH---HHHHHHHHHH
Confidence 998876554 679999999999998862 22 567888888889999764 22 22 2679999999
Q ss_pred HHHHcCCceEEeec
Q psy10095 472 VMDKLNMKYRICKA 485 (680)
Q Consensus 472 il~~L~LpyRVv~m 485 (680)
+++.||++--.+.+
T Consensus 131 ~l~~lg~~~~~i~l 144 (261)
T cd00773 131 ILEALGLKDFQIKI 144 (261)
T ss_pred HHHHcCCCceEEEE
Confidence 99999986433444
No 42
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=98.54 E-value=8.3e-07 Score=99.76 Aligned_cols=208 Identities=10% Similarity=0.026 Sum_probs=158.1
Q ss_pred cceEEEeCchHHHHHHHHHHHHHHHHh-hCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecC---------------
Q psy10095 302 RLDIHYLGNAAKFEYLIPIILKDYFTV-KHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNN--------------- 365 (680)
Q Consensus 302 srfyyL~G~gA~LE~ALi~y~ld~~~~-~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~--------------- 365 (680)
+++|=|-=.|+.|.+.|++.=...++. +.+...+-+|.|++..|..++|..-.|.+-.......
T Consensus 30 ~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~ 109 (539)
T PRK14894 30 QGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPN 109 (539)
T ss_pred ccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCC
Confidence 567777778999999999988776764 4467899999999999999999998886543221100
Q ss_pred -C-Cccccc-----------cc---cCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccC
Q psy10095 366 -E-NDLSEI-----------GY---EERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTS 429 (680)
Q Consensus 366 -~-~~~~~~-----------~~---~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs 429 (680)
+ .++.+| +. +....||=|-+----++++-.=--.....||.-.+-+|++||.|. +
T Consensus 110 CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEI---------s 180 (539)
T PRK14894 110 CGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEI---------N 180 (539)
T ss_pred CCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCcc---------C
Confidence 1 112111 00 001245544222122334332233356799999999999999983 3
Q ss_pred CCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCc---eEEeecCCCCCCcccccceeeeeeecC
Q psy10095 430 KHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK---YRICKAPADVLHTSESHRLEYQVYSYS 506 (680)
Q Consensus 430 ~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~Lp---yRVv~m~tgdLg~~a~kkyDIEvW~P~ 506 (680)
--.||+|+..|+..|+=.|| +|+++.++|...++....||.+||++ +|.-+....+|-.-|..++|+|.-+|+
T Consensus 181 ---Pr~~l~R~REF~q~EiE~Fv-~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~ 256 (539)
T PRK14894 181 ---PRNFLFRVREFEQMEIEYFV-MPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPN 256 (539)
T ss_pred ---CCCceeecccchhheEEEEe-CCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCC
Confidence 35689999999999999999 99999999999999999999999997 788899999999999999999999986
Q ss_pred CCceeeeeecCcchhhh
Q psy10095 507 LNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 507 ~~~Y~EisS~Sn~~~~q 523 (680)
-+ |.||.-+.|-+++.
T Consensus 257 ~G-w~E~~Gia~RtdyD 272 (539)
T PRK14894 257 IG-VQEIEGIANRTDYD 272 (539)
T ss_pred CC-eEEEEEeecccccC
Confidence 53 99999999887775
No 43
>KOG1637|consensus
Probab=98.53 E-value=2.5e-07 Score=101.76 Aligned_cols=176 Identities=9% Similarity=0.147 Sum_probs=142.0
Q ss_pred CCChhhhhhcCCccccc--CcceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceE
Q psy10095 284 GKNKIDMDALSKYVQYT--NRLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMV 361 (680)
Q Consensus 284 ~~~H~elg~~l~l~D~~--~srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~ 361 (680)
.+||--||.+++|+=|. +++.+|+.-.|+++-.+|+.|+-.... ++||++|++|-|.++.+-+.+|..-.-.+++|.
T Consensus 162 ~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~-~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~ 240 (560)
T KOG1637|consen 162 KRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYR-KRGFTEVITPNIYNKKLWETSGHWQNYSENMFK 240 (560)
T ss_pred hhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHH-hcCCceecCcchhhhhhhhhccchhhhhhhcee
Confidence 48999999999998776 588888999999999999999997764 579999999999999999999999888889998
Q ss_pred eecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhh
Q psy10095 362 LVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSI 441 (680)
Q Consensus 362 i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvH 441 (680)
++. +. +.+-|-|-.= ...|=+|...-....+||++++.+|.--|.|+ .| ...||-||.
T Consensus 241 ~e~-ek---------e~~~LKPMNC-PgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~-------SG----aLsGLTRvR 298 (560)
T KOG1637|consen 241 FEV-EK---------EEFALKPMNC-PGHCLMFAHRDRSYRELPLRFADFGVLHRNEA-------SG----ALSGLTRVR 298 (560)
T ss_pred eee-ch---------hhhccCccCC-CccccccccCCccHhhCCccccCcceeeeccc-------cc----cccccceee
Confidence 874 11 1122322111 22344555566677899999999999999985 23 367999999
Q ss_pred ccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q psy10095 442 QREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRIC 483 (680)
Q Consensus 442 QF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv 483 (680)
-|..=---.+| ++++-+++.+-.++..+.+|.-+|..|.+.
T Consensus 299 rFqQDDaHIFC-t~~Qi~~Eik~~l~fl~~vY~~fgf~f~l~ 339 (560)
T KOG1637|consen 299 RFQQDDAHIFC-TPDQVKEEIKGCLDFLDYVYGVFGFTFKLN 339 (560)
T ss_pred eecccCceEEe-cCccHHHHHHHHHHHHHHHHHhccccceeE
Confidence 98877777788 899999999999999999999899877764
No 44
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.53 E-value=3.2e-08 Score=68.77 Aligned_cols=27 Identities=48% Similarity=0.957 Sum_probs=25.7
Q ss_pred eeecccccccccChHHHHHhhccchhh
Q psy10095 56 QFYCLHCARHFIDEHALKEHFRTKVHK 82 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~k~K~HK 82 (680)
||||..|+|+|.|+.++..|++||.||
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence 799999999999999999999999998
No 45
>PRK07080 hypothetical protein; Validated
Probab=98.18 E-value=4.8e-05 Score=81.43 Aligned_cols=198 Identities=12% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CcccccCc-ceEEEeCchHHHHHHHHHHHHHHHHhhCC----cEeeccCcccchHHHHhhcCCCCCCCCceEeecCC-Cc
Q psy10095 295 KYVQYTNR-LDIHYLGNAAKFEYLIPIILKDYFTVKHN----FMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNE-ND 368 (680)
Q Consensus 295 ~l~D~~~s-rfyyL~G~gA~LE~ALi~y~ld~~~~~~G----f~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~-~~ 368 (680)
||+--.|. +.| |-...+|..+-. +|.++.+.| +.++.=|-++..++++.+|.+-.|++-.+++-... ++
T Consensus 29 g~~~~~g~~g~y---grs~~fe~v~~~--ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~~~g~~ 103 (317)
T PRK07080 29 GLLIPTGVDGLY---GRSGLFEDVVEA--LDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHSFCGNE 103 (317)
T ss_pred CceeccCCCccc---cccHHHHHHHHH--HHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecCCCCCC
Confidence 55544553 444 444445544332 333444445 99999999999999999999999998777654221 11
Q ss_pred cc------ccc--------ccCCCceeeccchhhhhhhhhccc-ccCCCCCCceEeeeCcccCCCccccccccccCCCCC
Q psy10095 369 LS------EIG--------YEERRNHLVGSAHMSMFCAYHTNH-SVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSR 433 (680)
Q Consensus 369 ~~------~~~--------~~~~~l~LigTaeevpl~~~~~~e-~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~d 433 (680)
.. ... -+..+..|.+.+= .|+=-+..++ .++.+. ..+.-.|.|||.| +|
T Consensus 104 ~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaC-yP~Yp~l~~~g~lp~~g--~~~dv~g~CFR~E---------~s---- 167 (317)
T PRK07080 104 AEHRRLLACLDRGEDWTESQKPTDVVLTPAAC-YPVYPVLARRGALPADG--RLVDVASYCFRHE---------PS---- 167 (317)
T ss_pred HHHHHHHHHHHhcCchhhhcCCCcceeccccc-ccchhhhccCcccCCCC--cEEEeeeeeeccC---------CC----
Confidence 00 000 0123567777553 5666666665 444343 6666767777776 22
Q ss_pred cccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccc----------cceeeeee
Q psy10095 434 VENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSES----------HRLEYQVY 503 (680)
Q Consensus 434 trGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~----------kkyDIEvW 503 (680)
.++=|+..|...|.+.+- +||+..+..+..++.+..+.+.|||+++|.. +.|==|... ..+-.|.|
T Consensus 168 -~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~--AnDPFF~~~gk~~a~~Qr~~~lKfEl~ 243 (317)
T PRK07080 168 -LDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERGTAMADALGLPVEIDL--ANDPFFGRGGKIVAASQREQNLKFELL 243 (317)
T ss_pred -CCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHHHHHHHHhCCceeEee--cCCccccccchhhhhhhhhccceeEEE
Confidence 579999999999999998 9999999999999999999999999999863 333222211 23456777
Q ss_pred ec--CCCceeeeeecC
Q psy10095 504 SY--SLNSWVTCMDLN 517 (680)
Q Consensus 504 ~P--~~~~Y~EisS~S 517 (680)
.| +.+++.-|.|++
T Consensus 244 vpi~~~~~~tA~~S~N 259 (317)
T PRK07080 244 IPIYSDAPPTACMSFN 259 (317)
T ss_pred EecCCCCCceEEEEEe
Confidence 76 556777777776
No 46
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.16 E-value=1.1e-06 Score=63.90 Aligned_cols=35 Identities=34% Similarity=0.694 Sum_probs=32.5
Q ss_pred CceeecccccccccChHHHHHhhccchhhhhhhhc
Q psy10095 54 EAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKAL 88 (680)
Q Consensus 54 ~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l 88 (680)
.|.|||..|+++|.+..++..|.+||.|+++|+.+
T Consensus 1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~~ 35 (35)
T smart00451 1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35 (35)
T ss_pred CcCeEccccCCccCCHHHHHHHHChHHHHHHHHcC
Confidence 37899999999999999999999999999999863
No 47
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.8e-05 Score=89.14 Aligned_cols=222 Identities=12% Similarity=0.118 Sum_probs=155.6
Q ss_pred hhhhhcCCcc----cccC--cceEEEeCchHHHHHHHHHHHHHHHHhh-CCcEeeccCcccchHHHHhhcCCCCCCCCce
Q psy10095 288 IDMDALSKYV----QYTN--RLDIHYLGNAAKFEYLIPIILKDYFTVK-HNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360 (680)
Q Consensus 288 ~elg~~l~l~----D~~~--srfyyL~G~gA~LE~ALi~y~ld~~~~~-~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~ 360 (680)
++|+++-|.+ +..| ++||=|-=.|+.|-+-+++---..++.. .|+..|-+|.|+...|+.++|..-.|.|-+.
T Consensus 10 ~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv 89 (558)
T COG0423 10 VELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLV 89 (558)
T ss_pred HHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCccccccccee
Confidence 4566666643 2223 5788777789999998888766666655 5799999999999999999999998876543
Q ss_pred EeecC-------------------CC----cc------------------cc-----------ccc-cCCCceeeccchh
Q psy10095 361 VLVNN-------------------EN----DL------------------SE-----------IGY-EERRNHLVGSAHM 387 (680)
Q Consensus 361 ~i~~~-------------------~~----~~------------------~~-----------~~~-~~~~l~LigTaee 387 (680)
..... ++ ++ .+ ||. +++..||=|-+.-
T Consensus 90 ~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQ 169 (558)
T COG0423 90 ECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQ 169 (558)
T ss_pred eccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccc
Confidence 21100 00 00 00 000 0112233321110
Q ss_pred hhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhH----------
Q psy10095 388 SMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHEN---------- 457 (680)
Q Consensus 388 vpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~---------- 457 (680)
--++|+-+=.-..-+.||.-.+-+|++||.|. | --.||+|+..|+..||=.|| +|++
T Consensus 170 GiFvnFk~l~~~~r~klPFgiaQIGKsfRNEI---------S---Pr~gl~R~REF~QaEiE~Fv-~P~~k~~p~f~~v~ 236 (558)
T COG0423 170 GIFVNFKNLLEFARNKLPFGIAQIGKSFRNEI---------S---PRNGLFRTREFEQAEIEFFV-DPEEKEHPKFNEVK 236 (558)
T ss_pred hhhhhhHHHHHHhccCCCeEEEeechhhcccc---------C---cccceeehhhhhhhheeeEE-CCCcccCcchhhhh
Confidence 11222211112245789999999999999983 3 34689999999999999999 7776
Q ss_pred ---------H--HH----------HHH-----HHHHHHHHHHHHcCCc---eEEeecCCCCCCcccccceeeeeeecCCC
Q psy10095 458 ---------L--CK----------EFQ-----NIQSLLKSVMDKLNMK---YRICKAPADVLHTSESHRLEYQVYSYSLN 508 (680)
Q Consensus 458 ---------S--~~----------~~e-----eml~~~e~il~~L~Lp---yRVv~m~tgdLg~~a~kkyDIEvW~P~~~ 508 (680)
. .+ +++ ..+.....++..||++ .|.-+-..++|---|..++|+|+.+|.-+
T Consensus 237 ~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g 316 (558)
T COG0423 237 DEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG 316 (558)
T ss_pred hhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCCCc
Confidence 4 22 233 5677888899999997 78888899999999999999999999555
Q ss_pred ceeeeeecCcchhhh
Q psy10095 509 SWVTCMDLNAKVYIQ 523 (680)
Q Consensus 509 ~Y~EisS~Sn~~~~q 523 (680)
|+||.-+.+-+++.
T Consensus 317 -WiE~~GiAdRtdYD 330 (558)
T COG0423 317 -WIELVGIADRTDYD 330 (558)
T ss_pred -eEEEEEeecccccc
Confidence 99999999988775
No 48
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=98.03 E-value=3.9e-05 Score=87.98 Aligned_cols=219 Identities=9% Similarity=0.088 Sum_probs=155.0
Q ss_pred hhhhhcCCccccc----C--cceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceE
Q psy10095 288 IDMDALSKYVQYT----N--RLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMV 361 (680)
Q Consensus 288 ~elg~~l~l~D~~----~--srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~ 361 (680)
.+|+.+.|.+--. | +++|-|-=.|+.|...+.+.=-+.++...|+.+|.+|.|+...|..++|..-.|.|-+..
T Consensus 7 ~~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~ 86 (551)
T TIGR00389 7 MSLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVD 86 (551)
T ss_pred HHHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceee
Confidence 3556666654322 2 678888889999999999988877766779999999999999999999999988775543
Q ss_pred eecCCC-------------------------------ccccccccC---------CCcee--eccchhhhhhhhhccc--
Q psy10095 362 LVNNEN-------------------------------DLSEIGYEE---------RRNHL--VGSAHMSMFCAYHTNH-- 397 (680)
Q Consensus 362 i~~~~~-------------------------------~~~~~~~~~---------~~l~L--igTaeevpl~~~~~~e-- 397 (680)
....+. .+.-|..++ |.++= ||-.+ ...+|.+=|
T Consensus 87 ~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~--~~~~yLRPETA 164 (551)
T TIGR00389 87 CKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVG--KRKGYLRPETA 164 (551)
T ss_pred cCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCC--Ccccccccccc
Confidence 211100 000010000 11110 11110 112222222
Q ss_pred -----------ccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChh-HHHH-----
Q psy10095 398 -----------SVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHE-NLCK----- 460 (680)
Q Consensus 398 -----------~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe-~S~~----- 460 (680)
-..-..||.-.+-+|++||.|. | --.||+|+..|+.-|+=.|| +|+ .+..
T Consensus 165 QGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEI---------s---Pr~~l~R~REF~q~EiE~F~-~p~~~~~~~f~~~ 231 (551)
T TIGR00389 165 QGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEI---------S---PRNGLFRVREFEQAEIEFFV-HPLDKSHPKFEEV 231 (551)
T ss_pred hhhHHhHHHHHHhcCCCCCeeehhhhHhhhccc---------C---cccceEEeehhhhchhheec-CcccccchhhHHH
Confidence 2255799999999999999983 3 45689999999999999999 885 2222
Q ss_pred -----------------------------HHHHHHHHHHHHHHHcCCc---eEEeecCCCCCCcccccceeeeeeecCCC
Q psy10095 461 -----------------------------EFQNIQSLLKSVMDKLNMK---YRICKAPADVLHTSESHRLEYQVYSYSLN 508 (680)
Q Consensus 461 -----------------------------~~eeml~~~e~il~~L~Lp---yRVv~m~tgdLg~~a~kkyDIEvW~P~~~ 508 (680)
.+...+.....||.+||++ .|.-.-.+.||-.-|..++|+|+.+|.
T Consensus 232 ~~~~~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~-- 309 (551)
T TIGR00389 232 KQDILPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPY-- 309 (551)
T ss_pred HHHHHhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCC--
Confidence 3444455558899999995 688888899999999999999999975
Q ss_pred ceeeeeecCcchhhh
Q psy10095 509 SWVTCMDLNAKVYIQ 523 (680)
Q Consensus 509 ~Y~EisS~Sn~~~~q 523 (680)
.|.||.-+.+-+++.
T Consensus 310 Gw~E~~G~a~R~~yD 324 (551)
T TIGR00389 310 GWIECVGIADRGDYD 324 (551)
T ss_pred CcEEEEEeccccccC
Confidence 699999999887775
No 49
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.85 E-value=0.00011 Score=81.10 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=102.5
Q ss_pred cceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhh-cCCC-CCCCCceEeecCCCccccccccCCCc
Q psy10095 302 RLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGY-GDHY-LSPHDNMVLVNNENDLSEIGYEERRN 379 (680)
Q Consensus 302 srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~-G~~p-~~~~~~~~i~~~~~~~~~~~~~~~~l 379 (680)
.++.-+.+.++..-+.+.+...+.+ .++||.+|.+|.|-..+++... |... ...+++|.+.+. ++..+
T Consensus 8 ~G~~d~~p~~~~~~~~i~~~i~~~~-~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~---------~g~~l 77 (412)
T PRK00037 8 RGTRDILPEESAKWQYVEDTIREVF-ERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK---------GGRSL 77 (412)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC---------CCCEE
Confidence 3567788899999999999999766 5689999999999999998654 4321 113456766531 13457
Q ss_pred eeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHH
Q psy10095 380 HLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLC 459 (680)
Q Consensus 380 ~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~ 459 (680)
.|-|... +|++-++..... +|+|++.+|++||.|. ... | |..+|..+..-.|+.+...++
T Consensus 78 ~LRpd~T-~~~ar~~~~~~~----~p~r~~~~g~vfR~e~--------~~~-----g--r~ref~Q~g~ei~g~~~~~~d 137 (412)
T PRK00037 78 TLRPEGT-APVVRAVIEHKL----QPFKLYYIGPMFRYER--------PQK-----G--RYRQFHQFGVEVIGSDSPLAD 137 (412)
T ss_pred EecCCCc-HHHHHHHHhCCC----CCeEEEEEcCccccCC--------CCC-----C--cccceEEcCeeeeCCCCcchh
Confidence 7877654 788877765421 9999999999999862 121 2 666777766655552222222
Q ss_pred HHHHHHHHHHHHHHHHcCCce
Q psy10095 460 KEFQNIQSLLKSVMDKLNMKY 480 (680)
Q Consensus 460 ~~~eeml~~~e~il~~L~Lpy 480 (680)
. |++..+.++|+.||++.
T Consensus 138 ~---E~i~~~~~~l~~lg~~~ 155 (412)
T PRK00037 138 A---EVIALAADILKALGLKG 155 (412)
T ss_pred H---HHHHHHHHHHHHcCCCc
Confidence 2 47899999999999985
No 50
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.82 E-value=0.00018 Score=79.10 Aligned_cols=150 Identities=10% Similarity=0.049 Sum_probs=103.7
Q ss_pred ceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhc-CCCC-CCCCceEeecCCCccccccccCCCce
Q psy10095 303 LDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYG-DHYL-SPHDNMVLVNNENDLSEIGYEERRNH 380 (680)
Q Consensus 303 rfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G-~~p~-~~~~~~~i~~~~~~~~~~~~~~~~l~ 380 (680)
++..+.+..+.+...|++...+.+ .++||.+|.+|.|-..+++...+ .... ...++|.+.. .++..+.
T Consensus 5 G~~d~~p~~~~~~~~i~~~i~~~f-~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d---------~~g~~l~ 74 (397)
T TIGR00442 5 GTRDFLPEEMIKWQYIEETIREVF-ELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKD---------KGGRSLT 74 (397)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHH-HHcCCeEecCcccchHHHhhhccCccccccccceEEEEC---------CCCCEEe
Confidence 345667888999999999988766 56899999999999999987754 2211 2244566552 1234577
Q ss_pred eeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHH
Q psy10095 381 LVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCK 460 (680)
Q Consensus 381 LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~ 460 (680)
|-+... +|++-++.... ....+|+|++-+|++||.|. . +..|..+|..+..=.++.+...+
T Consensus 75 LRpD~T-~~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~--------~-------~~gr~ref~Q~g~eiig~~~~~~-- 135 (397)
T TIGR00442 75 LRPEGT-APVARAVIENK-LLLPKPFKLYYIGPMFRYER--------P-------QKGRYRQFHQFGVEVIGSDSPLA-- 135 (397)
T ss_pred ecCCCc-HHHHHHHHhcc-cccCCCeEEEEEcCeecCCC--------C-------CCCcccceEEcCeeeeCCCCHHH--
Confidence 777665 78887765442 23578999999999999862 1 11266788776665555222222
Q ss_pred HHHHHHHHHHHHHHHcCCc-eEE
Q psy10095 461 EFQNIQSLLKSVMDKLNMK-YRI 482 (680)
Q Consensus 461 ~~eeml~~~e~il~~L~Lp-yRV 482 (680)
. -|++..+.++|..||++ |++
T Consensus 136 d-~E~i~l~~e~l~~lg~~~~~i 157 (397)
T TIGR00442 136 D-AEIIALAAEILKELGIKDFTL 157 (397)
T ss_pred H-HHHHHHHHHHHHHcCCCceEE
Confidence 2 37899999999999997 554
No 51
>PLN02734 glycyl-tRNA synthetase
Probab=97.79 E-value=0.00074 Score=79.15 Aligned_cols=205 Identities=10% Similarity=0.108 Sum_probs=150.9
Q ss_pred cceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecC--------------CC
Q psy10095 302 RLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNN--------------EN 367 (680)
Q Consensus 302 srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~--------------~~ 367 (680)
++||=|==.|+.|-..++++=...++...++.+|-+|.|+...|+.++|..-+|.|-+...... +.
T Consensus 99 aG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~~~~~~~RADhlie~~~~~ 178 (684)
T PLN02734 99 AGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFCEE 178 (684)
T ss_pred ccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcCCCCcEecchHHHHHHHHh
Confidence 5788777789999999999888777766788899999999999999999999887643321100 00
Q ss_pred -----------------------------c---------cccccccC--------CCce--eeccchhhhhhhhhcccc-
Q psy10095 368 -----------------------------D---------LSEIGYEE--------RRNH--LVGSAHMSMFCAYHTNHS- 398 (680)
Q Consensus 368 -----------------------------~---------~~~~~~~~--------~~l~--LigTaeevpl~~~~~~e~- 398 (680)
+ +--|..++ |.++ -||-.+ -..||.+=|+
T Consensus 179 ~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~--~~~~YLRPETA 256 (684)
T PLN02734 179 KLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSG--LSVGYMRPETA 256 (684)
T ss_pred hhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcC--Cccceeccccc
Confidence 0 00000000 0111 022111 1233333322
Q ss_pred ------------cCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHH--------
Q psy10095 399 ------------VNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENL-------- 458 (680)
Q Consensus 399 ------------l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S-------- 458 (680)
+.-..||.-.+-+|..||.|. | --.||+|+..|+.-|+=.|| +|++.
T Consensus 257 QGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEI---------s---PR~gl~R~REF~qaEiE~Fv-~P~~k~h~~f~~v 323 (684)
T PLN02734 257 QGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEI---------S---PRQGLLRVREFTLAEIEHFV-DPEDKSHPKFSEV 323 (684)
T ss_pred chheeeHHHHHHhcCCCCCeeeeeccHhhhccc---------C---cccceeeechhhhhhhheec-Ccccccccchhhh
Confidence 255799999999999999983 2 45699999999999999999 88732
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHcCCc---eEEeecCCCCCCcccccceeee
Q psy10095 459 ----------------------------------CKEFQNIQSLLKSVMDKLNMK---YRICKAPADVLHTSESHRLEYQ 501 (680)
Q Consensus 459 ----------------------------------~~~~eeml~~~e~il~~L~Lp---yRVv~m~tgdLg~~a~kkyDIE 501 (680)
..+|...+.....||.+||++ .|.-.--+.+|---|...+|+|
T Consensus 324 ~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E 403 (684)
T PLN02734 324 ADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAE 403 (684)
T ss_pred hhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEE
Confidence 347889999999999999995 6888888999999999999999
Q ss_pred eeecCCCceeeeeecCcchhhh
Q psy10095 502 VYSYSLNSWVTCMDLNAKVYIQ 523 (680)
Q Consensus 502 vW~P~~~~Y~EisS~Sn~~~~q 523 (680)
+.+|. .|.||.-|.+-++|.
T Consensus 404 ~~~~~--GWiE~vG~AdRs~yD 423 (684)
T PLN02734 404 IECSY--GWIECVGIADRSAYD 423 (684)
T ss_pred EecCC--CcEEEEEeccccccc
Confidence 99965 699999999877664
No 52
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=97.62 E-value=0.00042 Score=77.46 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCC--CCCCCceEeecCCCccccccccCCCceeeccchhh
Q psy10095 311 AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHY--LSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMS 388 (680)
Q Consensus 311 gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p--~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeev 388 (680)
...|+.++.+++. ..||++|.+|.|.+.+.++..|-.. ...+++|.+. +.++|-++-. .
T Consensus 242 ~~~Led~IRevfv-----g~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e-------------e~lvLRPdLT-P 302 (453)
T TIGR02367 242 LGKLERDITKFFV-----DRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD-------------KNFCLRPMLA-P 302 (453)
T ss_pred HHHHHHHHHHHHH-----HCCCEEEECCeecchHHHHhhcCccCCcccccceEec-------------CceEecccCH-H
Confidence 4677788777766 2699999999999888877655321 1223444432 2356665442 4
Q ss_pred hhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHH
Q psy10095 389 MFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 389 pl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~ 468 (680)
+|+.+..... ....+|+|++.+|.|||.|. +.. -|+.+|.+++...+- . + ..|.++...
T Consensus 303 sLaR~La~N~-~~l~~PqKIFEIGkVFR~E~--------~~~-------thlREF~QL~~eIaG-~-~---atfaDleal 361 (453)
T TIGR02367 303 NLYNYLRKLD-RALPDPIKIFEIGPCYRKES--------DGK-------EHLEEFTMLNFCQMG-S-G---CTRENLEAI 361 (453)
T ss_pred HHHHHHHHhh-hhccCCeeEEEEcCeEecCC--------CCC-------CCcCeEEEEEEEEEC-C-C---CCHHHHHHH
Confidence 5665544321 12368999999999998862 222 257799999988765 2 2 235577789
Q ss_pred HHHHHHHcCCceEEee
Q psy10095 469 LKSVMDKLNMKYRICK 484 (680)
Q Consensus 469 ~e~il~~L~LpyRVv~ 484 (680)
+.++|..||+.|++..
T Consensus 362 L~e~Lr~LGIdfeitE 377 (453)
T TIGR02367 362 IKDFLDHLEIDFEIVG 377 (453)
T ss_pred HHHHHHHCCCceEEeC
Confidence 9999999999999963
No 53
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.60 E-value=0.00062 Score=76.17 Aligned_cols=143 Identities=8% Similarity=0.088 Sum_probs=98.8
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhh-cCCCC-CCCCceEeecCCCccccccccCCCceeeccch
Q psy10095 309 GNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGY-GDHYL-SPHDNMVLVNNENDLSEIGYEERRNHLVGSAH 386 (680)
Q Consensus 309 G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~-G~~p~-~~~~~~~i~~~~~~~~~~~~~~~~l~LigTae 386 (680)
+..+.+-+.|.+.+.+.+ .++||.+|.||.|=..+++... |..-. ..+++|.+.+. +++.+.|=|=..
T Consensus 15 p~~~~~~~~i~~~i~~~~-~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~---------~g~~l~LRpd~T 84 (430)
T CHL00201 15 PDEINYWQFIHDKALTLL-SLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR---------SNRDITLRPEGT 84 (430)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC---------CCCEEEeCCCCc
Confidence 566777888888888766 5689999999999999999764 53321 23566776531 123466765333
Q ss_pred hhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEEecCChhHHHHHHHH
Q psy10095 387 MSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFVGTNNHENLCKEFQN 464 (680)
Q Consensus 387 evpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~~~~~pe~S~~~~ee 464 (680)
+|++-++.........+|+|++-+|++||.|. .. +| |..||.. ||+|+.. ++. ++ -|
T Consensus 85 -~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~--------~q-----~G--R~Ref~Q~g~EiiG~~-~~~-aD---~E 143 (430)
T CHL00201 85 -AGIVRAFIENKMDYHSNLQRLWYSGPMFRYER--------PQ-----SG--RQRQFHQLGIEFIGSI-DAR-AD---TE 143 (430)
T ss_pred -HHHHHHHHHccccccCCCeEEEEEcceecCCC--------Cc-----CC--ccceeEEeceEEECCC-Chh-hH---HH
Confidence 57776654444444578999999999988862 22 23 6667776 7877755 332 33 47
Q ss_pred HHHHHHHHHHHcCCc-eEE
Q psy10095 465 IQSLLKSVMDKLNMK-YRI 482 (680)
Q Consensus 465 ml~~~e~il~~L~Lp-yRV 482 (680)
++..+.++|+.|||+ |.|
T Consensus 144 vi~l~~~~l~~lGl~~~~i 162 (430)
T CHL00201 144 VIHLAMQIFNELQVKNLIL 162 (430)
T ss_pred HHHHHHHHHHHcCCCceEE
Confidence 899999999999996 554
No 54
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.58 E-value=0.00047 Score=73.84 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=94.3
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhh
Q psy10095 309 GNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMS 388 (680)
Q Consensus 309 G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeev 388 (680)
...+.+-..+.+...+.+ .++||.+|.||.|-..+++...+. . ..+++|.+.+. ++..+.|-+=-. +
T Consensus 5 p~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~le~~~~~~~~~~-~-~~~~~~~~~d~---------~g~~l~LRpD~T-~ 71 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVF-RSWGYQEIITPTLEYLDTLSAGGG-I-LNEDLFKLFDS---------LGRVLGLRPDMT-T 71 (314)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeeccCcchhhHHHhcccCC-c-chhceEEEECC---------CCCEEeecCcCc-H
Confidence 456777888888888655 568999999999999999987764 2 34556777631 133466665222 5
Q ss_pred hhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEEecCChhHHHHHHHHHH
Q psy10095 389 MFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFVGTNNHENLCKEFQNIQ 466 (680)
Q Consensus 389 pl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~~~~~pe~S~~~~eeml 466 (680)
|++-++.... ....+|+|++-+|++||.+. .|..|..||.. ||+|+.. ...++ -|++
T Consensus 72 ~iaR~~~~~~-~~~~~p~r~~y~g~VfR~~~---------------~~~gr~re~~Q~g~Eiig~~--~~~ad---aEvi 130 (314)
T TIGR00443 72 PIARAVSTRL-RDRPLPLRLCYAGNVFRTNE---------------SGAGRSREFTQAGVELIGAG--GPAAD---AEVI 130 (314)
T ss_pred HHHHHHHHhc-ccCCCCeEEEEeceEeecCC---------------CcCCCcccccccceEEeCCC--CchhH---HHHH
Confidence 7777665432 24568999999999999861 23445556654 6777633 22333 3999
Q ss_pred HHHHHHHHHcCC
Q psy10095 467 SLLKSVMDKLNM 478 (680)
Q Consensus 467 ~~~e~il~~L~L 478 (680)
..+.++|+.||+
T Consensus 131 ~l~~~~l~~lg~ 142 (314)
T TIGR00443 131 ALLIEALKALGL 142 (314)
T ss_pred HHHHHHHHHcCC
Confidence 999999999998
No 55
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.32 E-value=0.002 Score=67.34 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCcEeeccCcccc-hHHHHhhcCCCCC-----CCCceEeecCCCccccccccCCCceeecc
Q psy10095 311 AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCK-GVIVEGYGDHYLS-----PHDNMVLVNNENDLSEIGYEERRNHLVGS 384 (680)
Q Consensus 311 gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr-~~v~~g~G~~p~~-----~~~~~~i~~~~~~~~~~~~~~~~l~LigT 384 (680)
...+...+.+++. .-||+++..|.++. ...+++.+ .|.+ ..++||+.+... ..++..+.-|
T Consensus 19 ~~~~~~~i~~~~~-----~~Gf~e~~~~~v~s~~~nFD~Ln-~p~dHpaR~~~Dtfyi~~p~~-------~~~~~~vLRT 85 (247)
T PF01409_consen 19 ITKFIREIRDIFV-----GMGFQEVEGPEVESEFYNFDALN-IPQDHPARDMQDTFYISNPYS-------AEEDYSVLRT 85 (247)
T ss_dssp HHHHHHHHHHHHH-----CTTSEEESTTSEEEHHHHTGGGT-STTTSCGGCGTTSEBSCSSSB-------CECSSEEE-S
T ss_pred HHHHHHHHHHHHH-----HCCCeEeeCCeEEeeHHHHHhhC-cCCCccccccccceeeecccc-------ccchhhhhhh
Confidence 3455555555443 36999999999966 45555555 5544 356788864111 0022334444
Q ss_pred chhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHH
Q psy10095 385 AHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQN 464 (680)
Q Consensus 385 aeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~ee 464 (680)
.. .|...-.. -.....|+|++.+|+|||+++ -..-..++|.++|-+++- .. .-|..
T Consensus 86 ht-s~~~~~~l---~~~~~~p~kif~iG~VyR~D~---------------~D~th~~~f~Qleg~~~~--~~---~~f~~ 141 (247)
T PF01409_consen 86 HT-SPGQLRTL---NKHRPPPIKIFEIGKVYRRDE---------------IDATHLPEFHQLEGLVVD--KN---VTFED 141 (247)
T ss_dssp ST-HHHHHHHH---TTTSHSSEEEEEEEEEESSSC---------------SBSSBESEEEEEEEEEEE--TT---E-HHH
T ss_pred hh-hHHHHHHH---HHhcCCCeEEEecCceEecCC---------------cccccCccceeEeeEEEe--cc---cchhH
Confidence 32 23322122 234668999999999999963 233445699999998766 22 24678
Q ss_pred HHHHHHHHHHHc-CCceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecC
Q psy10095 465 IQSLLKSVMDKL-NMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLN 517 (680)
Q Consensus 465 ml~~~e~il~~L-~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~S 517 (680)
|....+.++..| |....+-.-|+--=-.--+...||-.+.+..+.|.||.-|-
T Consensus 142 Lk~~l~~l~~~lfG~~~~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G 195 (247)
T PF01409_consen 142 LKGTLEELLKELFGIDVKVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCG 195 (247)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcccceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecc
Confidence 888999999999 88744444444322222455677777778899999998875
No 56
>PLN02530 histidine-tRNA ligase
Probab=97.25 E-value=0.0019 Score=73.51 Aligned_cols=155 Identities=7% Similarity=0.069 Sum_probs=103.7
Q ss_pred CcccccCc-ceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHh-hcCCCCCCCCceEeecCCCccccc
Q psy10095 295 KYVQYTNR-LDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEG-YGDHYLSPHDNMVLVNNENDLSEI 372 (680)
Q Consensus 295 ~l~D~~~s-rfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g-~G~~p~~~~~~~~i~~~~~~~~~~ 372 (680)
.++++..+ ++.-+.+..+.+-+.|.+.+.+.+ .++||.+|.||.|-..+++.. .|.. -..++|.+.+.
T Consensus 66 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~-~~~Gy~~I~tP~lE~~el~~~~~g~~--~~~~~y~f~D~------- 135 (487)
T PLN02530 66 PKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVS-RLFGFEEVDAPVLESEELYIRKAGEE--ITDQLYNFEDK------- 135 (487)
T ss_pred cccccCCCCCcCcCCHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHhccccCcc--cccceEEEECC-------
Confidence 34444432 344556888999999999999766 568999999999999999875 3532 33456666531
Q ss_pred cccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEE
Q psy10095 373 GYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFV 450 (680)
Q Consensus 373 ~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~ 450 (680)
++..+.|=|-.. +|++=++..... ...+|+|++.+|+|||.|. -.+|-+| ||.. ||+|+
T Consensus 136 --~g~~l~LRpD~T-~~iaR~~~~~~~-~~~~P~r~~y~g~vfR~e~-------------~q~gr~R--Ef~Q~giEiiG 196 (487)
T PLN02530 136 --GGRRVALRPELT-PSLARLVLQKGK-SLSLPLKWFAIGQCWRYER-------------MTRGRRR--EHYQWNMDIIG 196 (487)
T ss_pred --CCCEEecCCCCc-HHHHHHHHhccc-ccCCCeEEEEEcCEEcCcC-------------CCCCCcc--ceEEcCeeEeC
Confidence 133466655333 577766654322 2368999999999998862 3444344 4443 78887
Q ss_pred ecCChhHHHHHHHHHHHHHHHHHHHcCCc---eEEe
Q psy10095 451 GTNNHENLCKEFQNIQSLLKSVMDKLNMK---YRIC 483 (680)
Q Consensus 451 ~~~~pe~S~~~~eeml~~~e~il~~L~Lp---yRVv 483 (680)
.. ++ .++ -|++..+.++|+.|||+ |.|.
T Consensus 197 ~~-~~-~aD---aEvi~l~~~~l~~lgl~~~~~~i~ 227 (487)
T PLN02530 197 VP-GV-EAE---AELLAAIVTFFKRVGITSSDVGIK 227 (487)
T ss_pred CC-Cc-chh---HHHHHHHHHHHHHcCCCCCceEEE
Confidence 55 33 222 26888899999999995 6663
No 57
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.22 E-value=0.0022 Score=70.94 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=95.6
Q ss_pred eCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchh
Q psy10095 308 LGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHM 387 (680)
Q Consensus 308 ~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaee 387 (680)
.++-+.+-..+.+-+.+.+ .++||.+|.||.|-..+++.+.+... ....+|.+.+.. +++.+.|=+=-.
T Consensus 13 lp~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~e~~~~~~g~~-~~~~~~~f~d~~--------~g~~l~LRpD~T- 81 (391)
T PRK12292 13 LPEEARKIEEIRRRLLDLF-RRWGYEEVITPTLEYLDTLLAGGGAI-LDLRTFKLVDQL--------SGRTLGLRPDMT- 81 (391)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCceeeCcchhhHHHHhccCCcc-chhhhEEEeecC--------CCCEEEECCCCc-
Confidence 4566677777777777655 66899999999999998886543222 234567776310 234566665333
Q ss_pred hhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchh-hhccceEEEEEecCChhHHHHHHHHHH
Q psy10095 388 SMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN-SIQREKVNLFVGTNNHENLCKEFQNIQ 466 (680)
Q Consensus 388 vpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~R-vHQF~KVE~f~~~~~pe~S~~~~eeml 466 (680)
+|++=+++.. ......|+|++-+|++||.|. ...|-+| .||.. ||+|+.. ++ .++ -|++
T Consensus 82 ~~iaR~~a~~-~~~~~~p~r~~y~g~vfR~~~-------------~~~gr~ref~Q~g-~EiiG~~-~~-~aD---aEvi 141 (391)
T PRK12292 82 AQIARIAATR-LANRPGPLRLCYAGNVFRAQE-------------RGLGRSREFLQSG-VELIGDA-GL-EAD---AEVI 141 (391)
T ss_pred HHHHHHHHHh-ccCCCCCeEEEeeceeeecCC-------------CcCCCccchhccc-eEEeCCC-Cc-hHH---HHHH
Confidence 6777666543 223467999999999998862 2334454 34766 8999854 33 222 2899
Q ss_pred HHHHHHHHHcCCc-eEE
Q psy10095 467 SLLKSVMDKLNMK-YRI 482 (680)
Q Consensus 467 ~~~e~il~~L~Lp-yRV 482 (680)
..+.++|+.||++ |.|
T Consensus 142 ~l~~~~l~~lgl~~~~i 158 (391)
T PRK12292 142 LLLLEALKALGLPNFTL 158 (391)
T ss_pred HHHHHHHHHcCCCCeEE
Confidence 9999999999995 544
No 58
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.0028 Score=70.62 Aligned_cols=143 Identities=16% Similarity=0.120 Sum_probs=97.1
Q ss_pred EeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhh-cCCCCCCCCceEeecCCCccccccccCCCceeeccc
Q psy10095 307 YLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGY-GDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSA 385 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~-G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTa 385 (680)
+.+..+.+.+.+.+-..+.+ .++||.+|.+|.|-..+++... |......+++|.+.+. .+..+.|-|-.
T Consensus 13 ~~p~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~---------~g~~l~LRpD~ 82 (423)
T PRK12420 13 YLPEEQVLRNKIKRALEDVF-ERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ---------GKRDLALRYDL 82 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHHhcccCCCcccccceEEEecC---------CCceecccccc
Confidence 45566777777777777655 5689999999999999998653 4333334556776631 13457777654
Q ss_pred hhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEEecCChhHHHHHHH
Q psy10095 386 HMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFVGTNNHENLCKEFQ 463 (680)
Q Consensus 386 eevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~~~~~pe~S~~~~e 463 (680)
. +|++-+.+... ...+|+|++.+|+|||.+. . ..| |..||.. ||+|+.. ++ .++ -
T Consensus 83 T-~~iaR~va~~~--~~~~p~r~~y~g~vfR~~~--------~-----~~g--r~rE~~Q~g~EiiG~~-~~-~ad---a 139 (423)
T PRK12420 83 T-IPFAKVVAMNP--NIRLPFKRYEIGKVFRDGP--------I-----KQG--RFREFIQCDVDIVGVE-SV-MAE---A 139 (423)
T ss_pred c-HHHHHHHHhCc--CCCCCeeEEEEcceECCCC--------C-----CCC--ccceeEECCeeeECCC-CC-ccc---H
Confidence 4 67776665542 2367999999999998852 1 233 3444443 7888854 22 222 4
Q ss_pred HHHHHHHHHHHHcCCceEE
Q psy10095 464 NIQSLLKSVMDKLNMKYRI 482 (680)
Q Consensus 464 eml~~~e~il~~L~LpyRV 482 (680)
|++..+.++|+.||+.|.|
T Consensus 140 Evi~la~~~l~~lg~~~~i 158 (423)
T PRK12420 140 ELMSMAFELFRRLNLEVTI 158 (423)
T ss_pred HHHHHHHHHHHHCCCCEEE
Confidence 8899999999999998754
No 59
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.13 E-value=0.089 Score=57.60 Aligned_cols=153 Identities=12% Similarity=0.185 Sum_probs=89.0
Q ss_pred CCcEeeccCcccchHHHHhhcCCCCC-----CCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCC
Q psy10095 330 HNFMPFTNTDLCKGVIVEGYGDHYLS-----PHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDL 404 (680)
Q Consensus 330 ~Gf~~i~~P~~Vr~~v~~g~G~~p~~-----~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~L 404 (680)
-||+++..|.+.....-...-..|.+ ..+.||+.. . .|.-|.-...++-... ....
T Consensus 124 mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~--~------------~lLRThTSp~qir~L~-----~~~~ 184 (339)
T PRK00488 124 MGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDD--G------------LLLRTHTSPVQIRTME-----KQKP 184 (339)
T ss_pred CCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcC--C------------ceeeccCcHHHHHHHH-----hcCC
Confidence 69999999999877754444445543 457888852 1 1222221011122121 2678
Q ss_pred CceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHc-C--CceE
Q psy10095 405 PVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKL-N--MKYR 481 (680)
Q Consensus 405 PlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L-~--LpyR 481 (680)
|+|++++|+|||.+ .-.--+.++|..+|.+++-.+ .-|.+|....+.++..| | +..|
T Consensus 185 Pirif~~G~VyR~D---------------~~DatH~~~FhQleglvvd~~-----vtf~dLK~~L~~fl~~~fg~~~~~R 244 (339)
T PRK00488 185 PIRIIAPGRVYRND---------------SDDATHSPMFHQVEGLVVDKN-----ISFADLKGTLEDFLKAFFGEDVKIR 244 (339)
T ss_pred CeEEEEeeeEEEcC---------------CCCcccCcceeeEEEEEEeCC-----CCHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999995 223345789999999998732 13566777777777766 4 3333
Q ss_pred EeecCCCCCCccc-ccceeeeeeecC--------CCceeeeeecCcchhhhHHH
Q psy10095 482 ICKAPADVLHTSE-SHRLEYQVYSYS--------LNSWVTCMDLNAKVYIQIVF 526 (680)
Q Consensus 482 Vv~m~tgdLg~~a-~kkyDIEvW~P~--------~~~Y~EisS~Sn~~~~q~~~ 526 (680)
.. |+ =.-|.+ +--+||..++.+ ...|.||.-|- .-.+.||
T Consensus 245 ~r--ps-yFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~G--mv~p~vl 293 (339)
T PRK00488 245 FR--PS-YFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCG--MVHPNVL 293 (339)
T ss_pred ec--CC-CCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccC--ccCHHHH
Confidence 22 32 222221 334555444332 23599988776 2234455
No 60
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0056 Score=66.56 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=99.4
Q ss_pred HHHHHHHhhCCcEeeccCcccchHHHHhhcCCCC-----CCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhc
Q psy10095 321 ILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYL-----SPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHT 395 (680)
Q Consensus 321 y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~-----~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~ 395 (680)
...+.++. -||+.+..|.+--..-=.-+=++|. +.+|.||+..+ .+ ..|.-|-. -|+.+-++
T Consensus 119 ~i~~iF~~-mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~----------~~-~~lLRTHT-s~vq~R~l 185 (335)
T COG0016 119 EIEDIFLG-MGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDD----------RE-KLLLRTHT-SPVQARTL 185 (335)
T ss_pred HHHHHHHH-cCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCC----------CC-ceeecccC-cHhhHHHH
Confidence 34444544 5999999995544433333334454 34578988741 11 23433332 34554444
Q ss_pred ccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHH
Q psy10095 396 NHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDK 475 (680)
Q Consensus 396 ~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~ 475 (680)
.+--+. |+|+++.|+|||.+ +-.--..|||..||-+++..+-. |..|...-++++..
T Consensus 186 ~~~~~~---P~k~~~~grvyR~D---------------~~DaTHs~~FhQiEGlvvd~~~s-----~~~Lkg~L~~f~~~ 242 (335)
T COG0016 186 AENAKI---PIKIFSPGRVYRND---------------TVDATHSPEFHQIEGLVVDKNIS-----FADLKGTLEEFAKK 242 (335)
T ss_pred HhCCCC---CceEecccceecCC---------------CCCcccchheeeeEEEEEeCCcc-----HHHHHHHHHHHHHH
Confidence 332222 99999999999995 44555679999999988772211 45666666666666
Q ss_pred cC-----CceEEeecCCCCCCcccccceeeeeeecCCCceeeeeecCcchhhhHHH
Q psy10095 476 LN-----MKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIVF 526 (680)
Q Consensus 476 L~-----LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q~~~ 526 (680)
++ +-||=-.-|=.+- -+.++||.|+.+.|.||.-|- --.+.|+
T Consensus 243 ~fg~~~~vRfrpsyFPFTEP------S~Evdv~~~~~~~WlEi~G~G--mv~P~VL 290 (335)
T COG0016 243 FFGEDVKVRFRPSYFPFTEP------SAEVDVYCPGCGGWLEILGCG--MVHPNVL 290 (335)
T ss_pred hcCCCcceEeecCCCCCCCC------eEEEEEEEcCCCCEEEEeccc--ccCHHHH
Confidence 65 4444444443332 258999999999999998776 2235555
No 61
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=96.88 E-value=0.016 Score=66.16 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q psy10095 404 LPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRIC 483 (680)
Q Consensus 404 LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv 483 (680)
-|+|++++++|||.|+ -. =-+.++|..+|-+++-.+. -+.+|+....++|..||+. .+-
T Consensus 356 ~P~k~fsigrVfR~d~--------~D-------atH~~eFhQ~Eg~vi~~~~-----s~~~L~~~l~~f~~~lG~~-~~R 414 (494)
T PTZ00326 356 KPKKYFSIDRVFRNET--------LD-------ATHLAEFHQVEGFVIDRNL-----TLGDLIGTIREFFRRIGIT-KLR 414 (494)
T ss_pred CCceEEecCCEecCCC--------CC-------CCcCceeEEEEEEEEeCCC-----CHHHHHHHHHHHHHhcCCC-ceE
Confidence 3999999999999973 22 2367899999999987332 3568899999999999872 222
Q ss_pred ecCCCCCCcccccceeeeeeecCCCceeeeeecC
Q psy10095 484 KAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLN 517 (680)
Q Consensus 484 ~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~S 517 (680)
.-|+ =.-|. .=-+.|++|.|+.++|.||..|-
T Consensus 415 frP~-yfPfT-EPS~Ev~v~~~~~gkWIEIgg~G 446 (494)
T PTZ00326 415 FKPA-FNPYT-EPSMEIFGYHPGLKKWVEVGNSG 446 (494)
T ss_pred EecC-CCCCC-CCeeEEEEEecCCCcEEEEeCcC
Confidence 2222 11111 11268899999999999998776
No 62
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.85 E-value=0.0081 Score=63.87 Aligned_cols=132 Identities=9% Similarity=0.113 Sum_probs=92.1
Q ss_pred EeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccch
Q psy10095 307 YLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAH 386 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTae 386 (680)
+.++-+.+.+.+.+-+.+.+ .++||.+|.||.|=..+++.. ....++|.+.+. +++.+.|=|=-.
T Consensus 14 ~lp~e~~~~~~i~~~l~~vf-~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~---------~g~~l~LRpD~T 78 (281)
T PRK12293 14 YFGKSAKLKREIENVASEIL-YENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDE---------KNHQISLRADST 78 (281)
T ss_pred cCcHHHHHHHHHHHHHHHHH-HHcCCeEeeccceeehhhhcc-----cchhceEEEECC---------CCCEEEECCcCC
Confidence 45677788888888888665 568999999999988777622 123456776631 133466655333
Q ss_pred hhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEEecCChhHHHHHHHH
Q psy10095 387 MSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFVGTNNHENLCKEFQN 464 (680)
Q Consensus 387 evpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~~~~~pe~S~~~~ee 464 (680)
+|++-++... .....+|+|++-+|++||.+ . .||.. ||+|+.. ++ .|
T Consensus 79 -~~iaR~~a~~-~~~~~~p~r~~Y~g~vfR~~--------~-------------rEf~Q~GvEliG~~-~~-------~E 127 (281)
T PRK12293 79 -LDVVRIVTKR-LGRSTEHKKWFYIQPVFRYP--------S-------------NEIYQIGAELIGEE-DL-------SE 127 (281)
T ss_pred -HHHHHHHHHh-cccCCCceeEEEeccEEecC--------C-------------CcccccCeEeeCCC-CH-------HH
Confidence 5777776543 22347899999888888774 1 25544 7989877 44 28
Q ss_pred HHHHHHHHHHHcCCceEEeec
Q psy10095 465 IQSLLKSVMDKLNMKYRICKA 485 (680)
Q Consensus 465 ml~~~e~il~~L~LpyRVv~m 485 (680)
++..+.++|+.||+++. |++
T Consensus 128 vi~la~~~l~~lgl~~~-i~i 147 (281)
T PRK12293 128 ILNIAAEIFEELELEPI-LQI 147 (281)
T ss_pred HHHHHHHHHHHcCCCCE-EEE
Confidence 99999999999999974 554
No 63
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.82 E-value=0.00072 Score=45.68 Aligned_cols=25 Identities=44% Similarity=1.006 Sum_probs=24.3
Q ss_pred eecccccccccChHHHHHhhccchh
Q psy10095 57 FYCLHCARHFIDEHALKEHFRTKVH 81 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~K~H 81 (680)
|||..|.+.|.+..+|..|++||.|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 7999999999999999999999988
No 64
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.012 Score=66.30 Aligned_cols=148 Identities=9% Similarity=0.110 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHh-hcCCCCC-CCCceEeecCCCccccccccCCCceeeccchhh
Q psy10095 311 AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEG-YGDHYLS-PHDNMVLVNNENDLSEIGYEERRNHLVGSAHMS 388 (680)
Q Consensus 311 gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g-~G~~p~~-~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeev 388 (680)
-+.+.+.+.+.+.+ +..+.||.+|-||.|=..+++.. .|-.-.- ..++|...+ .++..+.|-+-.. +
T Consensus 17 d~~~~~~i~~~~~~-v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~D---------kggr~laLRpe~T-a 85 (429)
T COG0124 17 DMALREYIESTIRK-VFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKD---------KGGRSLALRPELT-A 85 (429)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEe---------CCCCEEEecccCc-H
Confidence 44556667776664 55778999999999999998874 4522110 123454442 1245677775444 6
Q ss_pred hhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhh-hccceEEEEEecCChhHHHHHHHHHHH
Q psy10095 389 MFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNS-IQREKVNLFVGTNNHENLCKEFQNIQS 467 (680)
Q Consensus 389 pl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~Rv-HQF~KVE~f~~~~~pe~S~~~~eeml~ 467 (680)
|++-++..+..... .|+|+..+++|||.| +-.+|=||. ||| =||.|+.. +|. .=-|++.
T Consensus 86 pv~R~~~en~~~~~-~p~k~yy~g~vfRyE-------------rPQ~GR~RqF~Q~-g~E~iG~~-~~~----~DAEvi~ 145 (429)
T COG0124 86 PVARAVAENKLDLP-KPLKLYYFGPVFRYE-------------RPQKGRYRQFYQF-GVEVIGSD-SPD----ADAEVIA 145 (429)
T ss_pred HHHHHHHhcccccc-CCeeEEEecceecCC-------------CCCCCCceeeEEc-CeEEeCCC-Ccc----cCHHHHH
Confidence 88988887766555 899999999999987 346777885 444 48999987 443 2238899
Q ss_pred HHHHHHHHcCCc-eEEeecCCCC
Q psy10095 468 LLKSVMDKLNMK-YRICKAPADV 489 (680)
Q Consensus 468 ~~e~il~~L~Lp-yRVv~m~tgd 489 (680)
.+-++|++|||. |+|-.=.-|.
T Consensus 146 l~~~~l~~lGi~~~~l~iN~~g~ 168 (429)
T COG0124 146 LAVEILEALGIGGFTLEINSRGI 168 (429)
T ss_pred HHHHHHHHcCCCcEEEEEcCccc
Confidence 999999999999 6654433333
No 65
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.70 E-value=0.013 Score=65.06 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=91.7
Q ss_pred eCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHh-hcCCCCCCCCceEeecCCCccccccccCCCceeeccch
Q psy10095 308 LGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEG-YGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAH 386 (680)
Q Consensus 308 ~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g-~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTae 386 (680)
.++-+.....+.+-+.+.+ .++||.+|.||.|=..+++.+ .|... ...+|.+.+.. +++.+.|=|=-.
T Consensus 17 lp~e~~~~~~i~~~l~~~f-~~~Gy~~I~tP~~E~~e~~~~~~g~~~--~~~~y~f~D~~--------~g~~l~LRpD~T 85 (392)
T PRK12421 17 LPEEAQKIERLRRRLLDLF-ASRGYQLVMPPLIEYLESLLTGAGQDL--KLQTFKLIDQL--------SGRLMGVRADIT 85 (392)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEEeeCcchhhHHHHhccCCccc--hhceEEEEcCC--------CCcEEEECCcCC
Confidence 3555666777777777655 568999999999999998865 45332 23467666310 123455654332
Q ss_pred hhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchh-hhccceEEEEEecCChhHHHHHHHHH
Q psy10095 387 MSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN-SIQREKVNLFVGTNNHENLCKEFQNI 465 (680)
Q Consensus 387 evpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~R-vHQF~KVE~f~~~~~pe~S~~~~eem 465 (680)
+|++=+.... . ....|+|++-+|++||.+ ...+|-+| .||+ =||+|+.. +++ + =-|+
T Consensus 86 -~~iaR~~a~~-~-~~~~p~R~~Y~g~VfR~~-------------~~~~gr~rEf~Q~-GvEiiG~~-~~~-a---DaEv 143 (392)
T PRK12421 86 -PQVARIDAHL-L-NREGVARLCYAGSVLHTL-------------PQGLFGSRTPLQL-GAELYGHA-GIE-A---DLEI 143 (392)
T ss_pred -HHHHHHHHhh-c-CCCCceEEEEeeeEEEcC-------------CCcCCCcCcccee-ceEEeCCC-Cch-h---HHHH
Confidence 5677654433 2 236699999999999875 13445455 3555 37888865 332 2 2378
Q ss_pred HHHHHHHHHHcCCc-eEE
Q psy10095 466 QSLLKSVMDKLNMK-YRI 482 (680)
Q Consensus 466 l~~~e~il~~L~Lp-yRV 482 (680)
+..+.++|+.||++ |.+
T Consensus 144 i~l~~e~l~~lgi~~~~l 161 (392)
T PRK12421 144 IRLMLGLLRNAGVPALHL 161 (392)
T ss_pred HHHHHHHHHHcCCCCeEE
Confidence 89999999999995 544
No 66
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=96.60 E-value=0.037 Score=63.08 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=106.9
Q ss_pred EeCchHHHHHHHHHHHHHHHHhhCCcEee-ccCcccchHHHHhhcCCCCC-----CCCceEeecCCCcc-----------
Q psy10095 307 YLGNAAKFEYLIPIILKDYFTVKHNFMPF-TNTDLCKGVIVEGYGDHYLS-----PHDNMVLVNNENDL----------- 369 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~ld~~~~~~Gf~~i-~~P~~Vr~~v~~g~G~~p~~-----~~~~~~i~~~~~~~----------- 369 (680)
..|..=-|-.. ++-..+.|.. -||+++ ..|.+....--.-+=++|.+ ..|+||+.......
T Consensus 216 ~~G~~HPl~~~-~~ei~~if~~-mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk 293 (492)
T PLN02853 216 EGGHLHPLLKV-RQQFRKIFLQ-MGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVK 293 (492)
T ss_pred CCCCCCHHHHH-HHHHHHHHHh-CCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHH
Confidence 34443333333 3344555544 699999 68888777666666666644 56789996311000
Q ss_pred --cc------ccc-------cCCCceee-ccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCC
Q psy10095 370 --SE------IGY-------EERRNHLV-GSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSR 433 (680)
Q Consensus 370 --~~------~~~-------~~~~l~Li-gTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~d 433 (680)
.+ ++. ....+.|= =|+. ++.-.|+... ....-|+||+++++|||+|++
T Consensus 294 ~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa-~s~r~L~~~~--~~~~~p~k~fsigrVfR~d~i------------- 357 (492)
T PLN02853 294 TVHESGGYGSIGYGYDWKREEANKNLLRTHTTA-VSSRMLYKLA--QKGFKPKRYFSIDRVFRNEAV------------- 357 (492)
T ss_pred HHHhcCCCCccccccccccchhcccccCCCCCH-HHHHHHHHhh--ccCCCCcEEEeccceecCCCC-------------
Confidence 00 000 00122231 1221 3333333211 123469999999999999742
Q ss_pred cccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCCCCcccccceeeeeeecCCCceeee
Q psy10095 434 VENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTC 513 (680)
Q Consensus 434 trGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~Ei 513 (680)
.--..++|..||-+++..+ --|..|+....+|+..||. -.|-.-|+- .-|. -=-+.|+||.|+.++|.||
T Consensus 358 --DatH~~eFhQ~EG~vvd~~-----~t~~~L~g~l~~f~~~lg~-~~~RfrP~y-fPfT-EPS~Ei~v~~~~~gkWiEi 427 (492)
T PLN02853 358 --DRTHLAEFHQVEGLVCDRG-----LTLGDLIGVLEDFFSRLGM-TKLRFKPAY-NPYT-EPSMEIFSYHEGLKKWVEV 427 (492)
T ss_pred --CcccCccceeEEEEEEeCC-----CCHHHHHHHHHHHHHHcCC-ceEEEecCC-CCCC-CCeEEEEEEecCCCCEEEE
Confidence 2235679999999988621 2355788888999999986 444444442 1121 1235777899999999999
Q ss_pred eecC
Q psy10095 514 MDLN 517 (680)
Q Consensus 514 sS~S 517 (680)
.-|-
T Consensus 428 ~g~G 431 (492)
T PLN02853 428 GNSG 431 (492)
T ss_pred ecCc
Confidence 8776
No 67
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=95.91 E-value=0.19 Score=53.89 Aligned_cols=148 Identities=13% Similarity=0.187 Sum_probs=85.4
Q ss_pred hCCcEeeccCcccch-HHHHhhcCCCC-----CCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCC
Q psy10095 329 KHNFMPFTNTDLCKG-VIVEGYGDHYL-----SPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVK 402 (680)
Q Consensus 329 ~~Gf~~i~~P~~Vr~-~v~~g~G~~p~-----~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~ 402 (680)
..||.++.+|.|+.. ..++..++ |. +..+.|++.. .. .-+.+|+| .-|-++..|. +
T Consensus 87 ~~Gf~Ev~~~~~~s~~~~fd~l~~-~~~hpar~~~d~~~l~d--~~-------vLRtsl~p----~ll~~l~~N~----~ 148 (294)
T TIGR00468 87 GLGFTEEKGPEVETDFWNFDALNI-PQDHPARDMQDTFYIKD--RL-------LLRTHTTA----VQLRTMEENE----K 148 (294)
T ss_pred HCCCEEeeCCceeccHHHHHHhCC-CCCCcchhhccceeecC--Cc-------ceecccHH----HHHHHHHhcC----C
Confidence 469999999999988 46666653 43 2224466541 10 01123333 1123333332 2
Q ss_pred CCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEE
Q psy10095 403 DLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRI 482 (680)
Q Consensus 403 ~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRV 482 (680)
.|+|++.+|++||+++ . |... .+||..++.+++- .. .-|.++....+.++..|++...+
T Consensus 149 -~pirlFEiGrVfr~d~---------~---d~~~---~pef~ql~gl~~~-~~----~~f~dLKg~le~ll~~l~~~~~~ 207 (294)
T TIGR00468 149 -PPIRIFSPGRVFRNDT---------V---DATH---LPEFHQVEGLVID-KN----VSFTNLKGFLEEFLKKMFGETEI 207 (294)
T ss_pred -CCceEEEecceEEcCC---------C---CCcc---CChhhEEEEEEEC-CC----CCHHHHHHHHHHHHHHhCCCcce
Confidence 7999999999999852 0 2111 3499999998654 11 12889999999999999986222
Q ss_pred eecCCCCCCcccccceeeeeeecCCCceeeeeecC
Q psy10095 483 CKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLN 517 (680)
Q Consensus 483 v~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS~S 517 (680)
-.-++.-=..-.+...||-.| .| ..|.||.-|-
T Consensus 208 ~~~~~~~p~~~Ps~e~~i~~~-~g-~~w~eiG~~G 240 (294)
T TIGR00468 208 RFRPSYFPFTEPSAEIDVYCW-EG-KTWLEVLGAG 240 (294)
T ss_pred eeccCCCCCCCCCEEEEEEEe-CC-CccEEEEEec
Confidence 112322111122334555444 23 3488887655
No 68
>PLN02972 Histidyl-tRNA synthetase
Probab=95.73 E-value=0.069 Score=63.90 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=91.7
Q ss_pred EeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhh-cCCCCCCCCceEeecCCCccccccccCCCceeeccc
Q psy10095 307 YLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGY-GDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSA 385 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~-G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTa 385 (680)
+.+.-+.+.+.+.+-..+.+ .++||.+|.||.|-..+++.+- |. +...+|.+.+. ++..+.|-+=-
T Consensus 336 ~lP~e~~~re~I~~~L~~vF-k~hGy~eI~TPvfE~~Ell~~k~Ge---d~k~mY~f~D~---------gGr~LaLRPDl 402 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVF-KRHGATALDTPVFELRETLMGKYGE---DSKLIYDLADQ---------GGELCSLRYDL 402 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHcCCEEccCCcccchHHhhcccCc---chhheEEEECC---------CCCEEEeCCCC
Confidence 33555666777777666555 6799999999999998888652 32 23456777631 13346666533
Q ss_pred hhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchh-hhccceEEEEEecCChhHHHHHHHH
Q psy10095 386 HMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYN-SIQREKVNLFVGTNNHENLCKEFQN 464 (680)
Q Consensus 386 eevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~R-vHQF~KVE~f~~~~~pe~S~~~~ee 464 (680)
. +|++=++....+ .|+|...+|++||.|. . .+|-|| .||+ =||+|+.. ++..+++ |
T Consensus 403 T-vPiAR~vA~n~~----~p~KrYyiG~VFR~e~--------p-----qkGR~REF~Q~-G~EIIG~~-~~~~aDA---E 459 (763)
T PLN02972 403 T-VPFARYVAMNGI----TSFKRYQIAKVYRRDN--------P-----SKGRYREFYQC-DFDIAGVY-EPMGPDF---E 459 (763)
T ss_pred h-HHHHHHHHhCCC----CcceEEEeccEEecCC--------C-----CCCCCccceEE-eEEEEcCC-CcchhhH---H
Confidence 3 678876665422 3888888888888762 2 456566 3354 37888864 3322222 7
Q ss_pred HHHHHHHHHHHcCCc-eEE
Q psy10095 465 IQSLLKSVMDKLNMK-YRI 482 (680)
Q Consensus 465 ml~~~e~il~~L~Lp-yRV 482 (680)
++..+.++|+.||++ |.|
T Consensus 460 VI~La~E~L~~LGi~df~I 478 (763)
T PLN02972 460 IIKVLTELLDELDIGTYEV 478 (763)
T ss_pred HHHHHHHHHHhCCCCceEE
Confidence 999999999999984 444
No 69
>KOG0717|consensus
Probab=95.37 E-value=0.0056 Score=68.31 Aligned_cols=33 Identities=36% Similarity=0.741 Sum_probs=32.3
Q ss_pred eecccccccccChHHHHHhhccchhhhhhhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRTKVHKRRLKALE 89 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~ 89 (680)
.||+.|.+-|-++.+|..|..||.||+-|-+|+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLr 325 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELR 325 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999997
No 70
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=95.35 E-value=0.11 Score=55.12 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=83.2
Q ss_pred eCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchh
Q psy10095 308 LGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHM 387 (680)
Q Consensus 308 ~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaee 387 (680)
.+.-|....-+.+=+.+.+ .++||.+|.||.|-..+++...+.. +.++.|.+.+. ++..+.|=+=-.
T Consensus 6 ~~~~~~~~~~i~~~l~~~f-~~~Gy~~i~~P~le~~~~~~~~~~~--~~~~~~~~~D~---------~G~~l~LR~D~T- 72 (311)
T PF13393_consen 6 LPEEARKRERIESKLREVF-ERHGYEEIETPLLEYYELFLDKSGE--DSDNMYRFLDR---------SGRVLALRPDLT- 72 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHH-HHTT-EE-B--SEEEHHHHHCHSST--TGGCSEEEECT---------TSSEEEE-SSSH-
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEEEECCeEeecHHhhhcccc--chhhhEEEEec---------CCcEeccCCCCc-
Confidence 3444455555555555444 5689999999999999988865522 23367777631 234466655443
Q ss_pred hhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEEecCChhHHHHHHHHH
Q psy10095 388 SMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFVGTNNHENLCKEFQNI 465 (680)
Q Consensus 388 vpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~~~~~pe~S~~~~eem 465 (680)
+|++-++.... . ...|.|++-+|++||.+. . ..| +..||.. ||+|+.. +++ .=-|+
T Consensus 73 ~~iaR~~a~~~-~-~~~~~r~~y~g~vfR~~~---------~----~~g--~~re~~Q~g~Eiig~~-~~~----~daEv 130 (311)
T PF13393_consen 73 VPIARYVARNL-N-LPRPKRYYYIGPVFRYER---------P----GKG--RPREFYQCGFEIIGSS-SLE----ADAEV 130 (311)
T ss_dssp HHHHHHHHHCC-G-SSSSEEEEEEEEEEEEET---------T----TTT--BESEEEEEEEEEESSS-SHH----HHHHH
T ss_pred HHHHHHHHHhc-C-cCCCceEEEEcceeeccc---------c----CCC--CCceeEEEEEEEECCC-CHH----HHHHH
Confidence 68887776652 2 678999999899998851 1 112 4445544 6777655 332 13378
Q ss_pred HHHHHHHHH-HcCC
Q psy10095 466 QSLLKSVMD-KLNM 478 (680)
Q Consensus 466 l~~~e~il~-~L~L 478 (680)
+..+.++++ .|++
T Consensus 131 i~l~~e~l~~~l~~ 144 (311)
T PF13393_consen 131 IKLADEILDRELGL 144 (311)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCC
Confidence 889999997 8887
No 71
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=95.27 E-value=0.3 Score=55.92 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=102.1
Q ss_pred EEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCC-----CCCCCceEeecCCC-cc-----ccc--
Q psy10095 306 HYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHY-----LSPHDNMVLVNNEN-DL-----SEI-- 372 (680)
Q Consensus 306 yL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p-----~~~~~~~~i~~~~~-~~-----~~~-- 372 (680)
++-|....+ +-+++-..+.+. ..||++|.+|.+-.+.--.-+=|+| ++..++|++..... ++ +..
T Consensus 227 ~~~~~~~~~-~~~~~~~~~~f~-~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~ 304 (489)
T PRK04172 227 IYPGKKHPY-REFIDEVRDILV-EMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKE 304 (489)
T ss_pred CCCCCCChH-HHHHHHHHHHHH-HCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHH
Confidence 344554443 444555565554 5799999999987652222233343 34456777753110 00 000
Q ss_pred ----c-------------c-cCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCc
Q psy10095 373 ----G-------------Y-EERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRV 434 (680)
Q Consensus 373 ----~-------------~-~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dt 434 (680)
+ + ....+.|=+-+. .+++-+.... ...|+|++.+|+|||.|+ ...
T Consensus 305 ~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T-~~~~r~l~~~----~~~p~rlFeiGrVFR~e~--------~d~---- 367 (489)
T PRK04172 305 VHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTT-ALSARYLASR----PEPPQKYFSIGRVFRPDT--------IDA---- 367 (489)
T ss_pred HHhccCCCCCccccCCcchhhhhccccccCCh-HHHHHHHHhc----CCCCeEEEEecceEcCCC--------CCc----
Confidence 0 0 011234433222 3455544432 357999999999999862 111
Q ss_pred ccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCc-eEEeecCCCCCCcccccceeeeeeecCCCceeee
Q psy10095 435 ENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK-YRICKAPADVLHTSESHRLEYQVYSYSLNSWVTC 513 (680)
Q Consensus 435 rGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~Lp-yRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~Ei 513 (680)
|- ..||..++..++- .+ .-|-++...+++++..||++ +++ .|+..=.+ .--..+++|.++.+ |.||
T Consensus 368 -~~--l~Ef~ql~~~i~G-~~----~~f~elkg~l~~ll~~lGi~~~~~--~~~~~p~~--~P~~~~~i~~~g~~-w~ei 434 (489)
T PRK04172 368 -TH--LPEFYQLEGIVMG-ED----VSFRDLLGILKEFYKRLGFEEVKF--RPAYFPFT--EPSVEVEVYHEGLG-WVEL 434 (489)
T ss_pred -cc--CCchheEEEEEEe-CC----CCHHHHHHHHHHHHHHhCCceEEE--cCCcCCCC--CCeEEEEEEECCCC-eEEE
Confidence 21 2599999988766 32 12789999999999999995 554 23221111 22245566667765 8888
Q ss_pred eecC
Q psy10095 514 MDLN 517 (680)
Q Consensus 514 sS~S 517 (680)
.-+-
T Consensus 435 G~~G 438 (489)
T PRK04172 435 GGAG 438 (489)
T ss_pred Eecc
Confidence 7655
No 72
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=94.72 E-value=0.98 Score=47.95 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
..++++.+-+ ++.++||++|.||.|..... ++ | .+.|.+... +.+.+.||.-+.+ ..+-.+.
T Consensus 4 rs~i~~~ir~-~f~~~gf~ev~tP~l~~~~~-~~-~------~~~f~~~~~--------~~g~~~~L~~Spq-l~~~~~~ 65 (269)
T cd00669 4 RSKIIKAIRD-FMDDRGFLEVETPMLQKITG-GA-G------ARPFLVKYN--------ALGLDYYLRISPQ-LFKKRLM 65 (269)
T ss_pred HHHHHHHHHH-HHHHCCCEEEECCEEeccCC-cc-c------cceEEeeec--------CCCCcEEeecCHH-HHHHHHH
Confidence 3455555554 44568999999999996632 11 2 133555321 1235678873323 2222211
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHH-H
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKS-V 472 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~-i 472 (680)
...+. |+..+++|||.|. . + --+..+|+.+|.-. +. +.++..++.|+|+..... +
T Consensus 66 ------~~~~~-~vf~i~~~fR~e~---------~----~--~~hl~EF~~le~e~~~~-~~~dvm~~~e~lv~~i~~~~ 122 (269)
T cd00669 66 ------VGGLD-RVFEINRNFRNED---------L----R--ARHQPEFTMMDLEMAFA-DYEDVIELTERLVRHLAREV 122 (269)
T ss_pred ------hcCCC-cEEEEecceeCCC---------C----C--CCcccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHH
Confidence 11121 7888888888851 1 2 24788999999975 45 778877777777754432 1
Q ss_pred H---------------------------HHcCCceEEeecCCCCCCcccc-------cceeeeeeecCCCceeeeeecCc
Q psy10095 473 M---------------------------DKLNMKYRICKAPADVLHTSES-------HRLEYQVYSYSLNSWVTCMDLNA 518 (680)
Q Consensus 473 l---------------------------~~L~LpyRVv~m~tgdLg~~a~-------kkyDIEvW~P~~~~Y~EisS~Sn 518 (680)
+ +.|+=|+=|.+-|+.-..+-+. .....|+++|| +||++-|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~~~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g----~Ei~~G~~ 198 (269)
T cd00669 123 LGVTAVTYGFELEDFGLPFPRLTYREALERYGQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFING----VEVGNGSS 198 (269)
T ss_pred hccccccccccccccCCCceEeeHHHHHHHhCCceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCC----EEEeeCch
Confidence 1 2222334445666663333332 12456678887 59999883
No 73
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=94.68 E-value=0.023 Score=43.05 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=19.9
Q ss_pred eeeccccccccc-Ch-HHHHHhhccchhhhhhhh
Q psy10095 56 QFYCLHCARHFI-DE-HALKEHFRTKVHKRRLKA 87 (680)
Q Consensus 56 q~yC~~C~r~F~-~~-~~l~~H~k~K~HKrr~K~ 87 (680)
.|||-.|+.||. |. .+...|.+|+.|++-+++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 589999999994 33 567999999999998875
No 74
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.56 E-value=0.24 Score=54.93 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhCCcEeeccCcccchHHHHh-hcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhc
Q psy10095 317 LIPIILKDYFTVKHNFMPFTNTDLCKGVIVEG-YGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHT 395 (680)
Q Consensus 317 ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g-~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~ 395 (680)
++.+-..+.+ .++||.+|.||.|-..+++.. .|.. ....+|.+.+. .+..+.|-|=-. +|++=++.
T Consensus 9 ~i~~~i~~~f-~~~Gy~~I~tP~lE~~e~~~~~~g~~--~~~~~~~f~D~---------~G~~l~LRpD~T-~piaR~~~ 75 (373)
T PRK12295 9 AAAEALLASF-EAAGAVRVDPPILQPAEPFLDLSGED--IRRRIFVTSDE---------NGEELCLRPDFT-IPVCRRHI 75 (373)
T ss_pred HHHHHHHHHH-HHcCCEEeeCCccccHHHhhhccCch--hhcceEEEECC---------CCCEEeeCCCCc-HHHHHHHH
Confidence 3344444434 568999999999999888754 3422 22346666531 134567765433 67886654
Q ss_pred ccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccc--eEEEEEecCChhHHHHHHHHHHHHHHHHH
Q psy10095 396 NHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQRE--KVNLFVGTNNHENLCKEFQNIQSLLKSVM 473 (680)
Q Consensus 396 ~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~--KVE~f~~~~~pe~S~~~~eeml~~~e~il 473 (680)
.. ....|+|++-+|++||.+ .|=+ .||. =||+|+.. +...++ -|++..+.++|
T Consensus 76 ~~---~~~~p~R~~Y~g~VfR~~----------------~gr~--rEf~Q~GvEiiG~~-~~~~aD---aEvi~l~~~~L 130 (373)
T PRK12295 76 AT---AGGEPARYAYLGEVFRQR----------------RDRA--SEFLQAGIESFGRA-DPAAAD---AEVLALALEAL 130 (373)
T ss_pred Hc---CCCCCeEEEEEccEEECC----------------CCCC--CcceEeeEEeeCCC-CCccch---HHHHHHHHHHH
Confidence 43 245799999887777762 2323 3443 37888743 222222 27889999999
Q ss_pred HHcCCc
Q psy10095 474 DKLNMK 479 (680)
Q Consensus 474 ~~L~Lp 479 (680)
+.||+.
T Consensus 131 ~~lgl~ 136 (373)
T PRK12295 131 AALGPG 136 (373)
T ss_pred HHcCCC
Confidence 999985
No 75
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=93.43 E-value=0.71 Score=50.30 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
.-++++.+- .++.++||++|.||-|+... +|- .-+.|.+..+ ..+...||.- +++ +|
T Consensus 11 Rs~i~~~iR-~ff~~~gf~EV~TP~L~~~~----~~~----~~~~f~~~~~--------~~~~~~yL~~-Spq-----l~ 67 (329)
T cd00775 11 RSKIISYIR-KFLDDRGFLEVETPMLQPIA----GGA----AARPFITHHN--------ALDMDLYLRI-APE-----LY 67 (329)
T ss_pred HHHHHHHHH-HHHHHCCCEEEECCccccCC----CCc----cceeEEeccC--------CCCcceeecc-CHH-----HH
Confidence 334444444 45556899999999998553 221 1112332210 1134578863 332 23
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHH
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLL 469 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~ 469 (680)
.+..+.. .+ -++..+|+|||.| ++ + =.+..+|+.+|.-. +. +.++...+.++|+...
T Consensus 68 ~k~ll~~-g~-~~vf~i~~~FR~E---------~~-~-----~rHl~EFt~le~e~~~~-~~~~~m~~~e~li~~i 125 (329)
T cd00775 68 LKRLIVG-GF-ERVYEIGRNFRNE---------GI-D-----LTHNPEFTMIEFYEAYA-DYNDMMDLTEDLFSGL 125 (329)
T ss_pred HHHHHhc-CC-CcEEEEeccccCC---------CC-C-----CCCCCceEEEEEeeecC-CHHHHHHHHHHHHHHH
Confidence 3333322 23 5678889999997 22 1 15678999999954 44 6777767777776543
No 76
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=93.39 E-value=0.22 Score=56.70 Aligned_cols=102 Identities=14% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCc-e
Q psy10095 402 KDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK-Y 480 (680)
Q Consensus 402 ~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~Lp-y 480 (680)
..+|+|++++|+|||.++ ..|. -+.++|.++|-+++- .+ .-|.++....+.++..||.. +
T Consensus 204 ~~~PiRIFsIGRVfRrD~-----------~~Da---THl~eFhQlEGLVVd--ed---VSf~DLKgvLe~LLr~LG~~~v 264 (533)
T TIGR00470 204 RKLPLKLFSIDRCFRREQ-----------REDR---SHLMTYHSASCVVVD--EE---VSVDDGKAVAEGLLAQFGFTKF 264 (533)
T ss_pred CCCCeEEEeeeeEEecCC-----------CCCC---ccCceeeeEEEEEEC--CC---CCHHHHHHHHHHHHHHhCCceE
Confidence 468999999999999962 1122 347899999999876 22 35778999999999999963 3
Q ss_pred EEeecCCCC--CCcccccceeeeeeecCCCceeeeeecCcchhhhHHH
Q psy10095 481 RICKAPADV--LHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIVF 526 (680)
Q Consensus 481 RVv~m~tgd--Lg~~a~kkyDIEvW~P~~~~Y~EisS~Sn~~~~q~~~ 526 (680)
|.- |+.. =.+-......|.+|-|..+.|.||.-|- .+.+.|+
T Consensus 265 RFR--PsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~G--mVhPeVL 308 (533)
T TIGR00470 265 RFR--PDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFG--VYSPIAL 308 (533)
T ss_pred Eec--cCcCCCCCcCCCceEEEEEEccCCCceEEEEecc--ccCHHHH
Confidence 333 3322 1122223368888889888899998776 3445555
No 77
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=93.19 E-value=0.022 Score=61.76 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=32.0
Q ss_pred eeecccccccccChHHHHHhhccchhhhhhhhccc
Q psy10095 56 QFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEV 90 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~~ 90 (680)
-+||+.|.|+|-.......|.++|.|+|-++..++
T Consensus 238 ~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 238 KVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred ceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 47999999999999999999999999998877665
No 78
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=93.13 E-value=0.49 Score=54.39 Aligned_cols=115 Identities=9% Similarity=-0.004 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
-|+-+-.++..++.++||.+|.||-|... .+|-.- .-|.... + .-+.++||. ++.+. |
T Consensus 174 ~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~----~~Ga~a----~pF~t~~--~------~~~~~~yL~-~Spql-----~ 231 (491)
T PRK00484 174 KRSKIISAIRRFLDNRGFLEVETPMLQPI----AGGAAA----RPFITHH--N------ALDIDLYLR-IAPEL-----Y 231 (491)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCceecc----CCCccc----eeeeecc--c------cCCCceEec-cCHHH-----H
Confidence 44444445545666789999999999733 233111 1232210 0 012357875 33332 2
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHH
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLL 469 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~ 469 (680)
....+- ..+ =|+.-+|+|||.| ++ ++ -+..+|+.+|.-. +. +.++..++.|+|+..+
T Consensus 232 lk~l~v-~g~-~rVfei~~~FR~E---------~~---~~---rH~pEFt~lE~e~a~~-d~~d~m~~~E~li~~i 289 (491)
T PRK00484 232 LKRLIV-GGF-ERVYEIGRNFRNE---------GI---DT---RHNPEFTMLEFYQAYA-DYNDMMDLTEELIRHL 289 (491)
T ss_pred HHHHHh-ccC-CcEEEEecceecC---------CC---CC---CcCCceEEEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 222221 112 3677889999998 33 33 5677999999964 65 7777777777776433
No 79
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=92.63 E-value=0.59 Score=50.60 Aligned_cols=126 Identities=10% Similarity=0.103 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhh
Q psy10095 312 AKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFC 391 (680)
Q Consensus 312 A~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~ 391 (680)
.++--++++..-+ ++.++||++|.||-|+.... + +..+.|.+...... .-+...||.-+.+
T Consensus 22 ~~~rs~i~~~ir~-ff~~~~f~Ev~tP~l~~~~~-~-------~~~~~F~v~~~~~~-----~~~~~~~L~~Spq----- 82 (335)
T PF00152_consen 22 LRIRSAILQAIRE-FFDKRGFIEVDTPILTSSTC-E-------GGAEPFSVDSEPGK-----YFGEPAYLTQSPQ----- 82 (335)
T ss_dssp HHHHHHHHHHHHH-HHHHTT-EEE---SEESSSS-S-------SSSCSEEEEESTTE-----ETTEEEEE-SSSH-----
T ss_pred HHHHHHHHHHHHH-HHHhCCceEEcCceeecccc-C-------ccccccccccchhh-----hcccceecCcChH-----
Confidence 3445556665554 44567999999999987631 1 23345766621111 1123578875544
Q ss_pred hhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHH
Q psy10095 392 AYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKS 471 (680)
Q Consensus 392 ~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~ 471 (680)
+|....+... + -|+.-+|+|||.| ++ ++---..+|+.+|+-..-.+.++..+..++|+...-.
T Consensus 83 -l~~k~ll~~g-~-~~vf~i~~~FR~E---------~~-----~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~ 145 (335)
T PF00152_consen 83 -LYLKRLLAAG-L-ERVFEIGPCFRNE---------ES-----RTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFK 145 (335)
T ss_dssp -HHHHHHHHTT-H-SEEEEEEEEE-BS---------SS-----CBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhhcccc-c-hhhhheecceecc---------Cc-----ccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHH
Confidence 2323222221 2 3577788888887 23 3333455899999998433777777777777765544
Q ss_pred HH
Q psy10095 472 VM 473 (680)
Q Consensus 472 il 473 (680)
-+
T Consensus 146 ~~ 147 (335)
T PF00152_consen 146 EL 147 (335)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 80
>PRK09350 poxB regulator PoxA; Provisional
Probab=92.61 E-value=0.32 Score=52.45 Aligned_cols=117 Identities=8% Similarity=0.003 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhc
Q psy10095 316 YLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHT 395 (680)
Q Consensus 316 ~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~ 395 (680)
++-+.-++..++.++||++|.||.|....+ .+....| + ...|.... . ..+..+||. |+.+..+.
T Consensus 8 r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~-~~~~~~~-f-~~~y~~~~-~-------~~~~~~~L~-~SPe~~~k---- 71 (306)
T PRK09350 8 RAKIIAEIRRFFADRGVLEVETPILSQATV-TDIHLVP-F-ETRFVGPG-A-------SQGKTLWLM-TSPEYHMK---- 71 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecccC-CCccCCc-e-eeeecccc-c-------cCCcceEEe-cCHHHHHH----
Confidence 333334444455668999999999987543 2222222 1 11122110 0 113457886 33333322
Q ss_pred ccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHH
Q psy10095 396 NHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQ 466 (680)
Q Consensus 396 ~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml 466 (680)
..+. ..+. |+.-+|+|||.|. + +--+..+|+.+|.-.+-.+.++..++.++|+
T Consensus 72 -r~la-~~~~-rvf~i~~~FR~e~---------~------~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 72 -RLLA-AGSG-PIFQICKSFRNEE---------A------GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred -HHhh-cccc-ceEEecceeecCC---------C------CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 2221 1122 8888889999872 2 1245669999998754324444444444443
No 81
>PRK06462 asparagine synthetase A; Reviewed
Probab=91.90 E-value=0.71 Score=50.48 Aligned_cols=120 Identities=9% Similarity=0.045 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
.-++++..- .++.++||++|.||-|... .-++.|--....-..+.+. .-+..+||.-+.+ +|
T Consensus 33 Rs~i~~~iR-~ff~~~~f~EV~TP~l~~~-~~~~~~~g~~~~~~~~~~~----------~~~~~~yL~~Spq------l~ 94 (335)
T PRK06462 33 QSSILRYTR-EFLDGRGFVEVLPPIISPS-TDPLMGLGSDLPVKQISID----------FYGVEYYLADSMI------LH 94 (335)
T ss_pred HHHHHHHHH-HHHHHCCCEEEeCCeEecC-CCCCCCccccCCccccccc----------cCCCceeeccCHH------HH
Confidence 344444444 4556789999999999865 2222221000001112221 1124578864332 23
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHH
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~ 468 (680)
++.+-.. + =|+.-+|+|||.| + .++-+=-...+|+.+|.-. +. +.++..++-++|+..
T Consensus 95 -k~ll~~g-~-~rVfeI~p~FR~E---------~---~~~~~~rHl~EFtmlE~e~~~~-d~~dlm~~~e~lv~~ 153 (335)
T PRK06462 95 -KQLALRM-L-GKIFYLSPNFRLE---------P---VDKDTGRHLYEFTQLDIEIEGA-DLDEVMDLIEDLIKY 153 (335)
T ss_pred -HHHHHhh-c-CcEEEEeccccCC---------C---CCCCCCCCCCchheeeehhhcC-CHHHHHHHHHHHHHH
Confidence 4433333 3 3677788999987 2 2221223456899999985 44 666666666666643
No 82
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=91.79 E-value=0.11 Score=34.20 Aligned_cols=22 Identities=32% Similarity=0.767 Sum_probs=20.6
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|-|..|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 6799999999999999999986
No 83
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=91.66 E-value=0.66 Score=54.41 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCce-eeccchhhhhh
Q psy10095 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNH-LVGSAHMSMFC 391 (680)
Q Consensus 313 ~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~-LigTaeevpl~ 391 (680)
++.-.+++.+- .++.++||++|-||.|..+. -+|.+ . |.+...- ...+.| |. ++.+.
T Consensus 139 r~Rs~i~~~iR-~ff~~~gFiEVeTP~L~~s~-~eGar----~----f~vp~~~--------~~~~~y~L~-qSpQl--- 196 (583)
T TIGR00459 139 KLRHKVTKAVR-NFLDQQGFLEIETPMLTKST-PEGAR----D----YLVPSRV--------HKGEFYALP-QSPQL--- 196 (583)
T ss_pred HHHHHHHHHHH-HHHHHCCCEEEECCeeccCC-CCCCc----c----eeeeeec--------CCCceeecC-CCHHH---
Confidence 34444555444 45566899999999999643 33332 1 2221100 012234 43 33221
Q ss_pred hhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHH
Q psy10095 392 AYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLK 470 (680)
Q Consensus 392 ~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e 470 (680)
|. +.+-..-+ =||.-+++|||.| ++ ++. |.-.|+.+|+-. +. +.++..++.|+|+..+-
T Consensus 197 --yk-q~l~v~G~-ervfqI~~~FR~E---------~~---~t~---r~pEFT~le~E~af~-d~~dvm~~~E~li~~v~ 256 (583)
T TIGR00459 197 --FK-QLLMVSGV-DRYYQIARCFRDE---------DL---RAD---RQPEFTQIDMEMSFM-TQEDVMELIEKLVSHVF 256 (583)
T ss_pred --HH-HHHHhccc-CcEEEEcceeeCC---------CC---CCC---CCcccCcceeeecCC-CHHHHHHHHHHHHHHHH
Confidence 21 22222223 3677788888887 22 221 567999999986 55 78888888888875443
Q ss_pred HHHH--HcCCceEEeecC
Q psy10095 471 SVMD--KLNMKYRICKAP 486 (680)
Q Consensus 471 ~il~--~L~LpyRVv~m~ 486 (680)
.-+. .+.-||+.+.+.
T Consensus 257 ~~v~~~~~~~pf~r~ty~ 274 (583)
T TIGR00459 257 LEVKGIDLKKPFPVMTYA 274 (583)
T ss_pred HHHhCCCCCCCceEEEHH
Confidence 2221 234578876654
No 84
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=91.45 E-value=0.99 Score=51.08 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=68.6
Q ss_pred cceEEEeCc---hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCC
Q psy10095 302 RLDIHYLGN---AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378 (680)
Q Consensus 302 srfyyL~G~---gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~ 378 (680)
.|+.-|++. ..+.-++.+-.++..++.++||++|-||.|+. ...+|.+ +.|.+.. -+..
T Consensus 122 ~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~-~~~eg~~-------~~f~~~~----------~~~~ 183 (437)
T PRK05159 122 NRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVA-SGTEGGA-------ELFPIDY----------FEKE 183 (437)
T ss_pred CcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccc-cCCCCCc-------ceEeEEe----------cCCc
Confidence 344445543 22234444444454566678999999999953 2333322 2343321 1235
Q ss_pred ceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCC-hh
Q psy10095 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNN-HE 456 (680)
Q Consensus 379 l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~-pe 456 (680)
+||.-+.+ +|....+ ...+ =|+.-+|+|||.| ++ +|. --..+|+.+|+-. +. + .+
T Consensus 184 ~~L~~Spq------l~~q~l~-~~g~-~rVf~i~~~FR~E---------~~---~t~--rHl~EFt~lE~e~a~~-~~~~ 240 (437)
T PRK05159 184 AYLAQSPQ------LYKQMMV-GAGF-ERVFEIGPVFRAE---------EH---NTS--RHLNEYTSIDVEMGFI-DDHE 240 (437)
T ss_pred eEecCCHH------HHHHHHH-hcCC-CcEEEEeceeeCC---------CC---CCc--ccchhhheeeeeeeec-ccHH
Confidence 67764332 2322222 2223 3577788888887 22 221 1245999999986 45 4 67
Q ss_pred HHHHHHHHHHH
Q psy10095 457 NLCKEFQNIQS 467 (680)
Q Consensus 457 ~S~~~~eeml~ 467 (680)
+..++-|+|+.
T Consensus 241 ~lm~~~e~lv~ 251 (437)
T PRK05159 241 DVMDLLENLLR 251 (437)
T ss_pred HHHHHHHHHHH
Confidence 76666666664
No 85
>KOG4163|consensus
Probab=91.38 E-value=1.1 Score=50.34 Aligned_cols=197 Identities=10% Similarity=0.000 Sum_probs=127.0
Q ss_pred hhhhhcCCcccccC-cceEEEeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhh-----cCCCCCCCCceE
Q psy10095 288 IDMDALSKYVQYTN-RLDIHYLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGY-----GDHYLSPHDNMV 361 (680)
Q Consensus 288 ~elg~~l~l~D~~~-srfyyL~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~-----G~~p~~~~~~~~ 361 (680)
.++..+-.+||+.. +++|+|+-.+-..=-|+..|+-..+ ++-|-...+=|-||-..++|.- ||.|.- .+.
T Consensus 73 ~qVitk~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~i-k~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEv---AwV 148 (551)
T KOG4163|consen 73 SQVITKGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEI-KKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEV---AWV 148 (551)
T ss_pred HHHhhhhhhheeecccceEEecchHHHHHHHHHHHHHHHH-HHhccccceeeeecCHHHHhhhhhhhccCCcce---EEE
Confidence 45666667888876 8899999999998889999887655 5679888888999999988874 443321 122
Q ss_pred eecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhh
Q psy10095 362 LVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSI 441 (680)
Q Consensus 362 i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvH 441 (680)
....++++++ -.-.-||+|-| +--+|++=+=.-.+||||+=---..-|=| =+.+.-.+|..
T Consensus 149 Tr~G~seLee------piaiRPTSETv-myp~yakWi~ShRDLPlkLNQW~nVvRWE------------fk~p~PFlRtr 209 (551)
T KOG4163|consen 149 TRAGNSELEE------PIAIRPTSETV-MYPYYAKWIQSHRDLPLKLNQWCNVVRWE------------FKHPQPFLRTR 209 (551)
T ss_pred EecCCccccc------ceeeccCccce-ecHHHHHHHHhhccCchhhhhhhhheeee------------ccCCCcchhhh
Confidence 2222333332 24455887633 33445555546689999985422223443 13456677777
Q ss_pred ccceEEEEE-ecCChhHHHHHHHHHHHHHHHHHHHc-CCceEEeecCCCCCC--cccccceeeeeeecCCCce
Q psy10095 442 QREKVNLFV-GTNNHENLCKEFQNIQSLLKSVMDKL-NMKYRICKAPADVLH--TSESHRLEYQVYSYSLNSW 510 (680)
Q Consensus 442 QF~KVE~f~-~~~~pe~S~~~~eeml~~~e~il~~L-~LpyRVv~m~tgdLg--~~a~kkyDIEvW~P~~~~Y 510 (680)
.|==-|=-. +. ++++++++--+||++...+|..| -+| ||.=--.+.. +.+--++-||+|+|..++=
T Consensus 210 EFLWQEGHTAfa-t~~eA~eEvlqiLdlYa~vy~ellAiP--VvkGrKse~EkFaGgd~TttvEa~i~~~Grg 279 (551)
T KOG4163|consen 210 EFLWQEGHTAFA-TPEEAEEEVLQILDLYARVYEELLAIP--VVKGRKSEKEKFAGGDYTTTVEAFIPCSGRG 279 (551)
T ss_pred HHHHhcCcchhC-CHhHHHHHHHHHHHHHHHHHHhhhccc--cccCccchhhhccCCcceEEEeeeecccccc
Confidence 764444333 33 79999999999999999998665 333 2222222221 2334578899999998763
No 86
>PLN02903 aminoacyl-tRNA ligase
Probab=91.26 E-value=0.71 Score=54.74 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhh-CCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 316 YLIPIILKDYFTVK-HNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 316 ~ALi~y~ld~~~~~-~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
|+-+..++..++.+ +||.+|.||.|.++.. +|.+ + |.+...- ..+..++|. ++.+ +|
T Consensus 206 Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~-eGar-------d-f~v~~~~-------~~g~~y~L~-qSPQ-----ly 263 (652)
T PLN02903 206 RHRVVKLIRRYLEDVHGFVEIETPILSRSTP-EGAR-------D-YLVPSRV-------QPGTFYALP-QSPQ-----LF 263 (652)
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCeeccCCC-CCCc-------c-cEEeeec-------CCCcccccC-CCHH-----HH
Confidence 33333444455554 7999999999986643 4443 1 2111100 011223454 3322 12
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHH-H
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKS-V 472 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~-i 472 (680)
.+.+-..-+ =||..+++|||.| ++ ++ -|.-.|+.+|+-. +. +.++..++.|+|+..+-. +
T Consensus 264 -kQ~Lm~~G~-~RvFqIa~~FR~E---------~~---~t---~RhpEFTqLE~E~sf~-d~~dvm~~~E~li~~v~~~~ 325 (652)
T PLN02903 264 -KQMLMVSGF-DRYYQIARCFRDE---------DL---RA---DRQPEFTQLDMELAFT-PLEDMLKLNEDLIRQVFKEI 325 (652)
T ss_pred -HHHHHhccC-CcEEEEehhhccC---------CC---CC---CcccceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHH
Confidence 222222223 3688888999887 21 12 2667999999985 56 788888888888754432 2
Q ss_pred HH-HcCCceEEeec
Q psy10095 473 MD-KLNMKYRICKA 485 (680)
Q Consensus 473 l~-~L~LpyRVv~m 485 (680)
+. .+..||+.+.+
T Consensus 326 ~~~~~~~PF~rity 339 (652)
T PLN02903 326 KGVQLPNPFPRLTY 339 (652)
T ss_pred hCCCCCCCceEEEH
Confidence 11 23347776544
No 87
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=91.12 E-value=0.65 Score=53.47 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhh
Q psy10095 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCA 392 (680)
Q Consensus 313 ~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~ 392 (680)
++.-.+++.+- .++.++||++|-||-|... . +|-.- .-|.+.. + .-+.++||.=+.| .
T Consensus 173 r~Rs~i~~~iR-~fl~~~gF~EVeTP~L~~~--~--gga~a----~pF~t~~--~------~~~~~~yLriSpE-L---- 230 (496)
T TIGR00499 173 LVRSKIIKAIR-RFLDDRGFIEVETPMLQVI--P--GGANA----RPFITHH--N------ALDMDLYLRIAPE-L---- 230 (496)
T ss_pred HHHHHHHHHHH-HHHHHCcCEEEeCCeeecC--C--CCccc----eeEEeec--c------cCCCceEEecCHH-H----
Confidence 33444444444 4556789999999999743 1 23111 1132221 0 0124578863333 2
Q ss_pred hhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHH
Q psy10095 393 YHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLL 469 (680)
Q Consensus 393 ~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~ 469 (680)
|.+..+-. -+ =|+.-+|+|||.| |+ ++ -....|+.+|... +. +.++..++.|+|+..+
T Consensus 231 -ylKrlivg-G~-~rVfeIg~~FRnE---------~~---~~---rH~pEFTmlE~y~a~~-d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 231 -YLKRLIVG-GF-EKVYEIGRNFRNE---------GV---DT---THNPEFTMIEFYQAYA-DYEDLMDLTENLFKFL 289 (496)
T ss_pred -HHHHHHhC-CC-CceEEEecceecC---------CC---CC---cccchhheeehhhhcC-CHHHHHHHHHHHHHHH
Confidence 33322211 11 3577788999998 33 33 5667999999975 55 7777777777777543
No 88
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=90.85 E-value=0.17 Score=34.67 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=20.5
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|.|..|++.|.+..+|..|+++
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCccCCccCChhHHHHHhHH
Confidence 7899999999999999999964
No 89
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=90.70 E-value=1.1 Score=50.74 Aligned_cols=113 Identities=10% Similarity=0.135 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhh
Q psy10095 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCA 392 (680)
Q Consensus 313 ~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~ 392 (680)
++.-++++.+- .++.++||++|-||.|+ +...+|.+ +.|.+.- -+..+||.-+.+
T Consensus 134 r~Rs~i~~~iR-~ff~~~gf~EV~TP~L~-~~~~eg~~-------~~f~v~~----------~~~~~yL~~Spq------ 188 (428)
T TIGR00458 134 RIRSGVLESVR-EFLAEEGFIEVHTPKLV-ASATEGGT-------ELFPITY----------FEREAFLGQSPQ------ 188 (428)
T ss_pred HHHHHHHHHHH-HHHHHCCCEEEeCCcee-cCCCCCCc-------ceeeeEe----------cCCcEEECcCHH------
Confidence 33444444444 55567899999999998 44445544 1233221 123567753222
Q ss_pred hhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHH
Q psy10095 393 YHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQS 467 (680)
Q Consensus 393 ~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~ 467 (680)
+|....+ ...+ =|+.-+|+|||.| + .+|. -...+|+.+|.-. +. +.++..++-|+|+.
T Consensus 189 l~~q~li-~~g~-~rVf~i~~~FR~E---------~---~~t~--rHl~EFt~lE~e~a~~-~~~dlm~~~e~li~ 247 (428)
T TIGR00458 189 LYKQQLM-AAGF-ERVYEIGPIFRAE---------E---HNTH--RHLNEATSIDIEMAFE-DHHDVMDILEELVV 247 (428)
T ss_pred HHHHHHH-hccc-CcEEEEecccccC---------C---CCCc--cchheeeEeeeeeccC-CHHHHHHHHHHHHH
Confidence 1222222 1223 3577788888887 2 2331 1334999999886 45 67776666666664
No 90
>PLN02502 lysyl-tRNA synthetase
Probab=90.39 E-value=1 Score=52.55 Aligned_cols=114 Identities=12% Similarity=0.009 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
-|+-|..++..++.++||++|-||-|.... .|.+-.| |.... + .-+.++||.= +.+. |
T Consensus 231 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~--gGA~a~p------F~t~~--n------~~~~~~yL~~-Spel-----~ 288 (553)
T PLN02502 231 TRAKIISYIRRFLDDRGFLEVETPMLNMIA--GGAAARP------FVTHH--N------DLNMDLYLRI-ATEL-----H 288 (553)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeeccC--CCccccc------eeeec--c------cCCcceeeec-CHHH-----H
Confidence 344444444456667899999999997532 2222122 22211 1 1124578863 3322 2
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHH
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~ 468 (680)
....+-. .+ =|+.-+|+|||.| |+ ++ -+...|+.+|.-. +. +.++..++.|+|+..
T Consensus 289 lK~L~v~-g~-~rVfeIg~~FRnE---------~~---~~---rH~pEFtmlE~y~a~~-d~~dlm~~~E~li~~ 345 (553)
T PLN02502 289 LKRLVVG-GF-ERVYEIGRQFRNE---------GI---ST---RHNPEFTTCEFYQAYA-DYNDMMELTEEMVSG 345 (553)
T ss_pred HHHHHHh-cc-CCEEEEcCeeeCC---------CC---CC---ccccceeehhhhhhcC-CHHHHHHHHHHHHHH
Confidence 2222211 12 3577788899887 33 33 6778999999964 66 777777777777643
No 91
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=90.31 E-value=0.15 Score=44.28 Aligned_cols=31 Identities=42% Similarity=0.775 Sum_probs=26.8
Q ss_pred eeecccccccccChHHHHHhhccchhhhhhh
Q psy10095 56 QFYCLHCARHFIDEHALKEHFRTKVHKRRLK 86 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K 86 (680)
.+.|..|.+.|.+..+|..|++++.|+++.-
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 6999999999999999999999999998754
No 92
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=90.30 E-value=1.1 Score=51.07 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhh
Q psy10095 312 AKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFC 391 (680)
Q Consensus 312 A~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~ 391 (680)
.++.-.+++.+- .++.++||++|-||-|... ..+|.| +.|.+....+ ......-+...||.-+.+
T Consensus 133 l~~Rs~i~~~iR-~f~~~~gf~EV~TP~L~~~-~~eg~~-------~~F~v~~~~~-~~~~~~~~~~~~L~~Spq----- 197 (450)
T PRK03932 133 MRIRNTLAQAIH-EFFNENGFVWVDTPIITAS-DCEGAG-------ELFRVTTLDL-DFSKDFFGKEAYLTVSGQ----- 197 (450)
T ss_pred HHHHHHHHHHHH-HHHHHCCCEEecCCceecc-CCCCCC-------CceEeecccc-cccccccCCCcccccCHH-----
Confidence 344444444444 5556789999999999976 233333 3354421000 000000123568864333
Q ss_pred hhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHH
Q psy10095 392 AYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 392 ~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~ 468 (680)
+|. +.+- ..+ =|+..+++|||.| ++.+. --..+|+.+|.-. +. +.++...+-|+|+..
T Consensus 198 -l~l-q~l~-~g~-~rVf~i~~~FR~E---------~~~t~-----rHl~EFt~lE~e~~~~-~~~~~m~~~e~li~~ 256 (450)
T PRK03932 198 -LYA-EAYA-MAL-GKVYTFGPTFRAE---------NSNTR-----RHLAEFWMIEPEMAFA-DLEDNMDLAEEMLKY 256 (450)
T ss_pred -HHH-HHHH-hcc-CCeEEeeeccccC---------CCCCc-----cccccccccceEEecc-CHHHHHHHHHHHHHH
Confidence 232 2222 234 3566788888887 33221 2245999999975 45 677666666666643
No 93
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=90.16 E-value=1.2 Score=52.28 Aligned_cols=116 Identities=13% Similarity=0.004 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
-|+-+-.++..++.++||.+|.||-|.... .|.+-.| |.... +. -+.++||.= |.+..
T Consensus 255 ~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~--GGA~a~P------F~T~~--n~------~d~~lYLri-SpEL~----- 312 (585)
T PTZ00417 255 TRTKIINYLRNFLNDRGFIEVETPTMNLVA--GGANARP------FITHH--ND------LDLDLYLRI-ATELP----- 312 (585)
T ss_pred HHHHHHHHHHHHHHHCCeEEEeCCeeeccC--Cccccee------EEecc--cC------CCcceEEee-cHHHH-----
Confidence 444444445456677899999999998762 2222222 22111 10 123578863 33332
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHH
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLL 469 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~ 469 (680)
.+..+-.. + =|+.-+|+|||.| |+ ++ -..-.|+.+|....-.+.++..++-|+|+..+
T Consensus 313 lKrLlvgG-~-~rVfeIgp~FRnE---------~~---~~---rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 313 LKMLIVGG-I-DKVYEIGKVFRNE---------GI---DN---THNPEFTSCEFYWAYADFYDLIKWSEDFFSQL 370 (585)
T ss_pred HHHHHHhC-C-CCEEEEcccccCC---------CC---CC---CccceeeeeeeeeecCCHHHHHHHHHHHHHHH
Confidence 23322111 2 3677889999998 32 33 45557999999963327777777777777543
No 94
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=89.99 E-value=0.97 Score=53.13 Aligned_cols=131 Identities=9% Similarity=0.123 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhh
Q psy10095 314 FEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAY 393 (680)
Q Consensus 314 LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~ 393 (680)
+.-.+++.+- .++.++||++|-||.|+.+. -+|.+ . |.+.. . . ..+..++|. ++.+.
T Consensus 143 ~Rs~i~~~iR-~ff~~~gFiEV~TP~L~~s~-~ega~----~----f~v~~-~--~----~~~~~~~L~-qSpql----- 199 (588)
T PRK00476 143 LRSKVTSAIR-NFLDDNGFLEIETPILTKST-PEGAR----D----YLVPS-R--V----HPGKFYALP-QSPQL----- 199 (588)
T ss_pred HHHHHHHHHH-HHHHHCCCEEEECCeeecCC-CCCCc----c----ceecc-c--c----cCCceeecC-CCHHH-----
Confidence 3444444444 44556899999999999763 33432 1 32221 0 0 012223343 33321
Q ss_pred hcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHH-
Q psy10095 394 HTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKS- 471 (680)
Q Consensus 394 ~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~- 471 (680)
|. +.+-...+ =||.-+++|||.| ++.+. |.-.|+.+|+-. +. +.++..++.|+|+..+-.
T Consensus 200 ~k-q~l~~~g~-~rvfqi~~~FR~E---------~~~~~------r~~EFt~le~e~af~-~~~dvm~~~E~li~~i~~~ 261 (588)
T PRK00476 200 FK-QLLMVAGF-DRYYQIARCFRDE---------DLRAD------RQPEFTQIDIEMSFV-TQEDVMALMEGLIRHVFKE 261 (588)
T ss_pred HH-HHHHhccc-CceEEEeceeecC---------CCCCC------cCcccccceeeecCC-CHHHHHHHHHHHHHHHHHH
Confidence 21 22222223 3677888999987 33332 455999999986 55 778777777777754332
Q ss_pred HHH-HcCCceEEeec
Q psy10095 472 VMD-KLNMKYRICKA 485 (680)
Q Consensus 472 il~-~L~LpyRVv~m 485 (680)
++. .|.-||+.+.+
T Consensus 262 ~~~~~~~~pf~r~ty 276 (588)
T PRK00476 262 VLGVDLPTPFPRMTY 276 (588)
T ss_pred HhCccCCCCceEEEH
Confidence 211 23446666543
No 95
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=89.55 E-value=1.5 Score=47.74 Aligned_cols=115 Identities=8% Similarity=0.050 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhh
Q psy10095 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCA 392 (680)
Q Consensus 313 ~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~ 392 (680)
++..++++... .+..++||++|.||.|.... .++.+ ..|.+.- -+..+||.-+.+
T Consensus 25 ~~rs~i~~~ir-~~f~~~gf~eV~TP~l~~~~-~e~~~-------~~f~~~~----------~~~~~yL~~Spq------ 79 (322)
T cd00776 25 RIRSEVLRAFR-EFLRENGFTEVHTPKITSTD-TEGGA-------ELFKVSY----------FGKPAYLAQSPQ------ 79 (322)
T ss_pred HHHHHHHHHHH-HHHHHCCCEEeeCCceecCC-CCccC-------Ccccccc----------CCCcceecCCHH------
Confidence 34444444444 45566899999999998732 12221 1232221 124578864333
Q ss_pred hhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecC-ChhHHHHHHHHHHHHH
Q psy10095 393 YHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTN-NHENLCKEFQNIQSLL 469 (680)
Q Consensus 393 ~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~-~pe~S~~~~eeml~~~ 469 (680)
+|....+. . + -|+.-+|+|||.| ++.+. -...+|+.+|.-..-. +.++..++.++|+...
T Consensus 80 l~lk~l~~-~-~-~~vf~i~~~FR~E---------~~~~~-----rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~ 140 (322)
T cd00776 80 LYKEMLIA-A-L-ERVYEIGPVFRAE---------KSNTR-----RHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYI 140 (322)
T ss_pred HHHHHHHH-h-h-hhhEEeccccccC---------CCCcC-----CCcceeeccceeeeccCCHHHHHHHHHHHHHHH
Confidence 23333332 2 2 3556678888887 33321 3567999999876432 5666666666666433
No 96
>PLN02532 asparagine-tRNA synthetase
Probab=89.54 E-value=1.1 Score=52.86 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=35.8
Q ss_pred eEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHH
Q psy10095 407 KYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKS 471 (680)
Q Consensus 407 Ky~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~ 471 (680)
|...+|+|||+| +++|+ -.+.+|+.+|.-. ++ +.++...+.|+|+..+..
T Consensus 391 rVYeIgP~FRAE------------~s~T~--RHL~EFtmlE~Emaf~-d~~dvM~l~E~lI~~v~k 441 (633)
T PLN02532 391 NVYTFGPRFRAD------------RIDSA--RHLAEMWMVEVEMAFS-ELEDAMNCAEDYFKFLCK 441 (633)
T ss_pred ceEEEccceecC------------CCCCC--cccccccceeeeehhc-CHHHHHHHHHHHHHHHHH
Confidence 566678888887 33443 3477999999975 56 788888888888765444
No 97
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=89.47 E-value=2.4 Score=50.89 Aligned_cols=144 Identities=8% Similarity=0.023 Sum_probs=76.3
Q ss_pred cceEEEeCc---hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCC
Q psy10095 302 RLDIHYLGN---AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERR 378 (680)
Q Consensus 302 srfyyL~G~---gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~ 378 (680)
.|+.-|+.. ..+.-|+-+..++..++.++||++|-||.|+.+. -+|.+ + |.+...- . ...
T Consensus 142 ~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~-~eGAr-------~-~~~p~~~-------~-~~~ 204 (706)
T PRK12820 142 YRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKST-PEGAR-------D-YLVPSRI-------H-PKE 204 (706)
T ss_pred CceeecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC-CCCCc-------c-eEEeeec-------C-CCc
Confidence 344455553 2222334344444455567899999999999743 33322 1 1111000 0 112
Q ss_pred ceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhH
Q psy10095 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHEN 457 (680)
Q Consensus 379 l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~ 457 (680)
.|..+++.+ +| .+.+-...+ =||.-+++|||.| ++ ++. |...|+.+|+-. +. +.++
T Consensus 205 ~y~L~qSPQ-----ly-kq~lm~~G~-~rvfqI~~~FR~E---------~~---~t~---r~pEFT~LE~E~af~-d~~d 261 (706)
T PRK12820 205 FYALPQSPQ-----LF-KQLLMIAGF-ERYFQLARCFRDE---------DL---RPN---RQPEFTQLDIEASFI-DEEF 261 (706)
T ss_pred ceecCCCHH-----HH-HHHHHhccC-CcEEEEechhcCC---------CC---CCC---cCccccccceeeccC-CHHH
Confidence 332223321 12 222222223 3677889999987 22 221 668999999985 65 7888
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCceEEeec
Q psy10095 458 LCKEFQNIQSLLKSVM-DKLNMKYRICKA 485 (680)
Q Consensus 458 S~~~~eeml~~~e~il-~~L~LpyRVv~m 485 (680)
..++.|+|+...-.+. ..+..||+.+..
T Consensus 262 vm~l~E~li~~v~~~~~~~~~~pf~r~ty 290 (706)
T PRK12820 262 IFELIEELTARMFAIGGIALPRPFPRMPY 290 (706)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCceEEEH
Confidence 8888888876443211 123346666543
No 98
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=89.05 E-value=0.46 Score=55.35 Aligned_cols=116 Identities=9% Similarity=0.103 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhh
Q psy10095 311 AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMF 390 (680)
Q Consensus 311 gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl 390 (680)
..++.-++++++-+.+ .++||++|.||-|+... .+|-+ +.|.+.. -+...||.-+.+
T Consensus 212 i~r~rs~i~~~~R~fl-~~~gFiEV~TP~L~~~~-~egga-------~~F~v~y----------f~~~~~L~qSpq---- 268 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFL-IDSDFCEIHSPKIINAP-SEGGA-------NVFKLEY----------FNRFAYLAQSPQ---- 268 (550)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEEeCCccccCC-CCccc-------ccccccc----------CCCCeecCCCHH----
Confidence 3455666666666544 56799999999999865 34332 1233321 123467753222
Q ss_pred hhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEE-EEecCChhHHHHHHHHHHH
Q psy10095 391 CAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNL-FVGTNNHENLCKEFQNIQS 467 (680)
Q Consensus 391 ~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~-f~~~~~pe~S~~~~eeml~ 467 (680)
+| .+.+-...+ =|+.-+|+|||.| ++ +|. -....|+.+|+ ..+..+.++...+.++|+.
T Consensus 269 --l~-kq~li~~g~-~rVfeI~p~FRaE---------~s---~T~--RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 269 --LY-KQMVLQGDV-PRVFEVGPVFRSE---------NS---NTH--RHLTEFVGLDVEMRINEHYYEVLDLAESLFN 328 (550)
T ss_pred --HH-HHHHHhcCC-CCEEEEeCeEeCC---------CC---CCC--CCccchhhhhhhhHhcCCHHHHHHHHHHHHH
Confidence 23 333333333 3577788999997 22 221 22348999999 5555345666666666654
No 99
>PLN02748 tRNA dimethylallyltransferase
Probab=88.07 E-value=0.28 Score=56.06 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=32.2
Q ss_pred ceeecccccc-cccChHHHHHhhccchhhhhhhhcc
Q psy10095 55 AQFYCLHCAR-HFIDEHALKEHFRTKVHKRRLKALE 89 (680)
Q Consensus 55 gq~yC~~C~r-~F~~~~~l~~H~k~K~HKrr~K~l~ 89 (680)
-+|+|-.|.+ .|+.+..-..|.+|+.||||||.++
T Consensus 417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~ 452 (468)
T PLN02748 417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK 452 (468)
T ss_pred ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence 4567999997 8999999999999999999999885
No 100
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=88.04 E-value=3.4 Score=47.85 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYH 394 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~ 394 (680)
-|+-+..++..++.++||++|-||-|... -.|.+-.| |.... + .-+.++||.= +.+. |
T Consensus 186 ~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~--~gGa~a~p------F~t~~--~------~~~~~~yL~~-SpEL-----y 243 (505)
T PRK12445 186 VRSKILAAIRQFMVARGFMEVETPMMQVI--PGGASARP------FITHH--N------ALDLDMYLRI-APEL-----Y 243 (505)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCeeEec--CCCCcccc------eeccc--c------cCCcceeeec-CHHH-----H
Confidence 44444444445666789999999999542 11111112 21110 0 0123578863 3322 3
Q ss_pred cccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHH
Q psy10095 395 TNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 395 ~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~ 468 (680)
.+..+- .-+ =|+.-+|+|||.| |+ +--....|+.+|.-..-.+.++..++-|+|+..
T Consensus 244 lKrliv-gG~-~rVfeIg~~FRnE---------~~------~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~ 300 (505)
T PRK12445 244 LKRLVV-GGF-ERVFEINRNFRNE---------GI------SVRHNPEFTMMELYMAYADYHDLIELTESLFRT 300 (505)
T ss_pred HHHHHh-ccC-CcEEEEehhccCC---------CC------CCCcCcccceeeeeeecCCHHHHHHHHHHHHHH
Confidence 333221 112 3577788999887 33 225677999999997432777766666666643
No 101
>PLN02603 asparaginyl-tRNA synthetase
Probab=87.39 E-value=1.2 Score=52.06 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhc
Q psy10095 310 NAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYG 350 (680)
Q Consensus 310 ~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G 350 (680)
.-.++.-++++.+- .++.++||++|.||-|..+ .-+|.|
T Consensus 224 ai~RiRS~i~~air-~ff~~~gF~eV~TPiLt~s-~~EGA~ 262 (565)
T PLN02603 224 AVARVRNALAYATH-KFFQENGFVWVSSPIITAS-DCEGAG 262 (565)
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCEEEECCeeccc-CCCccc
Confidence 33455555555444 5556789999999999843 345555
No 102
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=87.06 E-value=2.8 Score=44.81 Aligned_cols=107 Identities=10% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCC
Q psy10095 323 KDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVK 402 (680)
Q Consensus 323 ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~ 402 (680)
+..++.++||++|.||-|..... +|.+- |.+..+. ..+..++|. ++.+ +|....+- .
T Consensus 11 iR~f~~~~gfiEV~TP~L~~~~~-~g~~~--------f~~~~~~-------~~~~~~~L~-~Spq-----l~lk~ll~-~ 67 (280)
T cd00777 11 IRNFLDEQGFVEIETPILTKSTP-EGARD--------FLVPSRL-------HPGKFYALP-QSPQ-----LFKQLLMV-S 67 (280)
T ss_pred HHHHHHHCCCEEEeCCeeecCCC-CCCCC--------ceecccc-------CCCceeecc-cCHH-----HHHHHHHh-c
Confidence 33445568999999999986554 44431 2111100 011224464 3322 23332221 2
Q ss_pred CCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHH
Q psy10095 403 DLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLL 469 (680)
Q Consensus 403 ~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~ 469 (680)
.+ =|+..+++|||.|. + ++ | |-.+|+.+|.-. +. +.++..++.|+|+..+
T Consensus 68 g~-~~v~~i~~~fR~e~---------~---~~-~--r~~Ef~~~e~e~~~~-~~~dlm~~~e~li~~i 118 (280)
T cd00777 68 GF-DRYFQIARCFRDED---------L---RA-D--RQPEFTQIDIEMSFV-DQEDIMSLIEGLLKYV 118 (280)
T ss_pred Cc-CcEEEeccceeCCC---------C---CC-C--ccceeEEeEeeeccC-CHHHHHHHHHHHHHHH
Confidence 22 35666778888862 1 22 1 445999998876 45 6777777777777543
No 103
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=87.02 E-value=3.3 Score=49.33 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=71.6
Q ss_pred CcceEEEe-Cc---hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccC
Q psy10095 301 NRLDIHYL-GN---AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEE 376 (680)
Q Consensus 301 ~srfyyL~-G~---gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~ 376 (680)
..|+.-|+ +. ..+.-|+-+..++..++.++||.+|-||-|... ..|.|-.| |.+.. + .-+
T Consensus 217 r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~--~~ga~a~p------F~t~~--n------~~~ 280 (659)
T PTZ00385 217 RYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTV--ASGANAKS------FVTHH--N------ANA 280 (659)
T ss_pred ccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeecc--CCCCCccc------eEeec--c------cCC
Confidence 35666663 44 333344444444545666789999999999532 23333223 32221 0 012
Q ss_pred CCceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChh
Q psy10095 377 RRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHE 456 (680)
Q Consensus 377 ~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe 456 (680)
.++||.= +.+ +|....+-. -+ =|+.-+|+|||.| |+ ++ -+.-.|+.+|.-..-.+.+
T Consensus 281 ~~~yL~~-SPE-----LylKrLivg-G~-erVyeIg~~FRnE---------~~---~~---rH~pEFTmlE~y~a~~d~~ 337 (659)
T PTZ00385 281 MDLFLRV-APE-----LHLKQCIVG-GM-ERIYEIGKVFRNE---------DA---DR---SHNPEFTSCEFYAAYHTYE 337 (659)
T ss_pred CCEEecC-ChH-----HHHHHHhhc-cc-CCEEEEeceecCC---------CC---CC---CccccccceeeeeecCCHH
Confidence 3578763 322 233332221 12 3577788999987 33 22 3677999999996432666
Q ss_pred HHHHHHHHHHH
Q psy10095 457 NLCKEFQNIQS 467 (680)
Q Consensus 457 ~S~~~~eeml~ 467 (680)
+..++.|+|+.
T Consensus 338 d~m~l~E~li~ 348 (659)
T PTZ00385 338 DLMPMTEDIFR 348 (659)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 104
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=86.82 E-value=1.2 Score=48.16 Aligned_cols=128 Identities=8% Similarity=-0.005 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcc
Q psy10095 317 LIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTN 396 (680)
Q Consensus 317 ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~ 396 (680)
++++.+-+ ++.++||++|.||-|....+-++.. . .|.+...+.. ......||.= +.+ +|.+
T Consensus 6 ~i~~~ir~-~f~~~gF~EV~TP~l~~~~~~e~~~-~------~F~~~y~~~~-----~~~~~~yL~~-Spq-----l~lk 66 (304)
T TIGR00462 6 RLLAAIRA-FFAERGVLEVETPLLSPAPVTDPHL-D------AFATEFLGPD-----GEGRPLYLQT-SPE-----YAMK 66 (304)
T ss_pred HHHHHHHH-HHHHCCCEEEECCeEecCCCCCcCC-c------ceeeeccCCC-----CCCcceeeec-CHH-----HHHH
Confidence 34443333 3456899999999998875433322 1 2333211100 0123578874 332 2333
Q ss_pred cccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHc
Q psy10095 397 HSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKL 476 (680)
Q Consensus 397 e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L 476 (680)
..+- ..+ =|...+|+|||+| ++ + . -....|+.+|.-..-.+.++..++.++|+.. +++.+
T Consensus 67 ~ll~-~g~-~rVfeigp~FRaE---------~~-~--~---rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~---i~~~~ 126 (304)
T TIGR00462 67 RLLA-AGS-GPIFQICKVFRNG---------ER-G--R---RHNPEFTMLEWYRPGFDYHDLMDEVEALLQE---LLGDP 126 (304)
T ss_pred HHHh-ccC-CCEEEEcCceeCC---------CC-C--C---CcccHHHhHHHHHHcCCHHHHHHHHHHHHHH---HHHhc
Confidence 3332 223 4677889999998 33 1 1 4456888888754222455555555555533 23333
Q ss_pred CCceEEe
Q psy10095 477 NMKYRIC 483 (680)
Q Consensus 477 ~LpyRVv 483 (680)
..|++++
T Consensus 127 ~~~~~~i 133 (304)
T TIGR00462 127 FAPWERL 133 (304)
T ss_pred CCCcEEE
Confidence 4445443
No 105
>PLN02221 asparaginyl-tRNA synthetase
Probab=86.16 E-value=2.4 Score=49.83 Aligned_cols=50 Identities=10% Similarity=-0.055 Sum_probs=33.2
Q ss_pred eEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHH
Q psy10095 407 KYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKS 471 (680)
Q Consensus 407 Ky~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~ 471 (680)
|...+|+|||+| +| +|+ -.+.+|+.+|.-. +. +.++...+.|+|+.....
T Consensus 328 rVfeIgP~FRAE---------~s---~T~--RHL~EFtmlE~Emaf~-d~~dvm~l~E~lv~~i~~ 378 (572)
T PLN02221 328 SVYTFGPTFRAE---------NS---HTS--RHLAEFWMVEPEIAFA-DLEDDMNCAEAYVKYMCK 378 (572)
T ss_pred CeEEEccceecC---------CC---CCC--cccccccceeeeeecC-CHHHHHHHHHHHHHHHHH
Confidence 455577777776 33 222 4467999999975 55 677777777777755444
No 106
>PLN02850 aspartate-tRNA ligase
Probab=85.89 E-value=2.5 Score=49.13 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhh
Q psy10095 311 AAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMF 390 (680)
Q Consensus 311 gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl 390 (680)
..++.-++++.+-+ ++.++||++|.||.|+.... +|.+ +.|.+.. -+..+||.-+.+
T Consensus 224 ifrirs~i~~~~R~-fl~~~gF~EV~TP~L~~~~~-egga-------~~F~v~y----------f~~~~~L~qSpq---- 280 (530)
T PLN02850 224 IFRIQSQVCNLFRE-FLLSKGFVEIHTPKLIAGAS-EGGS-------AVFRLDY----------KGQPACLAQSPQ---- 280 (530)
T ss_pred HHHHHHHHHHHHHH-HHHHCCcEEEeCCccccCCC-cccc-------ceeeecc----------CCcceecCCCHH----
Confidence 34456666666665 44568999999999955432 4432 2354431 123567753222
Q ss_pred hhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEE-EecCChhHHHHHHHHHHH
Q psy10095 391 CAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLF-VGTNNHENLCKEFQNIQS 467 (680)
Q Consensus 391 ~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f-~~~~~pe~S~~~~eeml~ 467 (680)
+|..-.+ ...+ =|+.-+|+|||+| +|.+. -.+..|+.+|+- .+..+.++..++.++|+.
T Consensus 281 --l~kq~li-~~g~-~rVfeIgp~FRaE---------~s~t~-----RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~ 340 (530)
T PLN02850 281 --LHKQMAI-CGDF-RRVFEIGPVFRAE---------DSFTH-----RHLCEFTGLDLEMEIKEHYSEVLDVVDELFV 340 (530)
T ss_pred --HHHHHHH-HhcC-CceEEEecccccC---------CCCCC-----ccchhhccchhhhhhhcCHHHHHHHHHHHHH
Confidence 1222211 1223 2788889999998 44332 135699999877 344245666666666664
No 107
>PHA02768 hypothetical protein; Provisional
Probab=84.71 E-value=0.48 Score=38.98 Aligned_cols=22 Identities=23% Similarity=0.677 Sum_probs=21.2
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|.|.+|++.|....+|..|+|+
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh
Confidence 6999999999999999999998
No 108
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=84.30 E-value=2.7 Score=47.95 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhh
Q psy10095 312 AKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFC 391 (680)
Q Consensus 312 A~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~ 391 (680)
.++.-++++.+-+ ++.++||++|.||.|+.... +|.| +.|.+...+.... ...-+...||.-+.+
T Consensus 136 lr~Rs~i~~~~r~-~~~~~gf~eV~TP~l~~~~~-eg~~-------~~F~v~~~~~~~~-~~~~~~~~yL~~Spq----- 200 (453)
T TIGR00457 136 MRVRNALSQAIHR-YFQENGFTWVSPPILTSNDC-EGAG-------ELFRVSTDGIDFS-QDFFGKEAYLTVSGQ----- 200 (453)
T ss_pred HHHHHHHHHHHHH-HHHHCCCEEecCCeEeecCC-CCCC-------CceEecccccccc-hhccCCccccccCHH-----
Confidence 4555666665554 55678999999999997542 3433 2233321000000 000123467764332
Q ss_pred hhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHH
Q psy10095 392 AYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 392 ~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~ 468 (680)
+|.. .+ ...+. |+..+++|||.| ++ +|. --..+|+.+|+-. +. +.++..++.|+|+..
T Consensus 201 -l~lq-~l-~~g~~-rVf~i~~~FR~E---------~~---~t~--rHl~EFt~le~e~~~~-~~~dvm~~~E~lv~~ 259 (453)
T TIGR00457 201 -LYLE-TY-ALALS-KVYTFGPTFRAE---------KS---NTS--RHLSEFWMIEPEMAFA-NLNDLLQLAETLIKY 259 (453)
T ss_pred -HHHH-HH-hhccc-CceEeeeccccC---------CC---CCC--cCcchhccceeeeecC-CHHHHHHHHHHHHHH
Confidence 2222 22 12333 556778888887 22 331 1234899999975 56 677766666666643
No 109
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.84 E-value=11 Score=37.15 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 177 ISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQ 250 (680)
Q Consensus 177 ~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le 250 (680)
++.+++..++.+..++..++..|+...+.+..+++.+.. ..+ .+++...+.+|+++++.+++.+..+.
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~--~~t----~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS--EPT----NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888888887743 221 34566677777777777776666554
No 110
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=83.72 E-value=0.73 Score=29.72 Aligned_cols=22 Identities=36% Similarity=0.850 Sum_probs=18.4
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|-|..|++-|.+..+|..|+++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 6799999999999999999875
No 111
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=83.49 E-value=12 Score=40.01 Aligned_cols=123 Identities=8% Similarity=-0.049 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceE-eecCCCccccccccCCCceeeccchhhhhhh
Q psy10095 314 FEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMV-LVNNENDLSEIGYEERRNHLVGSAHMSMFCA 392 (680)
Q Consensus 314 LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~-i~~~~~~~~~~~~~~~~l~LigTaeevpl~~ 392 (680)
|++.=+...+-.+..++||.+|.||.|=..+++.+.|... ....++ +.. .+++.+-|=|=-. .|++=
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~--~~~~~~~~~~---------~~Gr~laLRpD~T-~~iAR 75 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDL--QQMGERSFWQ---------HEHQIYALRNDFT-DQLLR 75 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccch--hhhheeeeec---------CCCCEEEEcCCCC-HHHHH
Confidence 3444444444344567899999999998888875444222 122233 332 1234456655332 56776
Q ss_pred hhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHH
Q psy10095 393 YHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSV 472 (680)
Q Consensus 393 ~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~i 472 (680)
+.+... .-|.|++=++++||.+. . .+|. =||+|+ + .. + +. .+.+..+.+.
T Consensus 76 ~~a~~~----~~~~Rl~Y~g~VfR~~~--------~-----------~~Q~-GvEliG-~-~~-~--a~-~e~l~la~~~ 125 (272)
T PRK12294 76 YYSMYP----TAATKVAYAGLIIRNNE--------A-----------AVQV-GIENYA-P-SL-A--NV-QQSFKLFIQF 125 (272)
T ss_pred HHHhcC----CCCceEEEeccEeccCC--------C-----------ccee-ceEEEC-C-Cc-h--hH-HHHHHHHHHH
Confidence 654321 23668888778887741 0 3454 489998 3 22 1 12 4555788888
Q ss_pred HHHcCC
Q psy10095 473 MDKLNM 478 (680)
Q Consensus 473 l~~L~L 478 (680)
+..+|+
T Consensus 126 l~~~g~ 131 (272)
T PRK12294 126 IQQQLR 131 (272)
T ss_pred HHHhCC
Confidence 888854
No 112
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=82.43 E-value=12 Score=44.13 Aligned_cols=51 Identities=6% Similarity=-0.108 Sum_probs=33.5
Q ss_pred eEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHHH
Q psy10095 407 KYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKSV 472 (680)
Q Consensus 407 Ky~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~i 472 (680)
|+..+|+|||+| .+ +|. --+.+|+.+|+=. +. +.++...+.|+|+......
T Consensus 345 rVf~i~p~FRaE---------~s---~t~--RHL~EFt~lE~E~af~-d~~d~m~~~E~li~~v~~~ 396 (586)
T PTZ00425 345 DVYTFGPTFRAE---------NS---HTS--RHLAEFWMIEPEIAFA-DLYDNMELAESYIKYCIGY 396 (586)
T ss_pred CEEEEeceEeCC---------CC---CCC--CCCcccceEEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 567778888887 22 222 2234999999975 55 6777777777777665543
No 113
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=82.27 E-value=31 Score=35.28 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=65.0
Q ss_pred hCCcEeeccCcccch-HHHHhhcCCCCCCC----CceEeecCCCccccccccCCCceeeccchhhhhh-hhhcccccCCC
Q psy10095 329 KHNFMPFTNTDLCKG-VIVEGYGDHYLSPH----DNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFC-AYHTNHSVNVK 402 (680)
Q Consensus 329 ~~Gf~~i~~P~~Vr~-~v~~g~G~~p~~~~----~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~-~~~~~e~l~~~ 402 (680)
..||.++.++.|+.. ......|+.+.... +.+++.+.- . ..=+..|+| +|. ++..|
T Consensus 16 ~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~----~~LR~sLlp-----~LL~~l~~N------ 77 (218)
T cd00496 16 SMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---R----LLLRTHTSA-----VQARALAKL------ 77 (218)
T ss_pred HCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc---e----EEEeccCcH-----HHHHHHHhc------
Confidence 469999999999988 35555553221100 223444200 0 000112332 222 33333
Q ss_pred CCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcC
Q psy10095 403 DLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLN 477 (680)
Q Consensus 403 ~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~ 477 (680)
..|++++-+|++|+++. + + . +.+. ||.+++....- .+ .-|.++...++.++..||
T Consensus 78 ~~~~~lFEiG~Vf~~~~---------~-~--~-~~~~--E~~~l~~~~~g-~~----~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 KPPIRIFSIGRVYRNDE---------I-D--A-THLP--EFHQIEGLVVD-KG----LTFADLKGTLEEFAKELF 132 (218)
T ss_pred CCCeeEEEEcCeEECCC---------C-C--C-CcCC--ccEEEEEEEEC-CC----CCHHHHHHHHHHHHHHhc
Confidence 67999999999998851 1 1 1 1122 88888865433 22 138899999999999999
No 114
>KOG4727|consensus
Probab=81.06 E-value=1.1 Score=44.73 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=31.7
Q ss_pred CCceeecccccccccChHHHHHhhccchhhhhhhhc
Q psy10095 53 GEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKAL 88 (680)
Q Consensus 53 G~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l 88 (680)
-.|-|||-.|+=.|-|......|.-+|+|-|-+-.+
T Consensus 72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred ccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 357899999999999999999999999998875443
No 115
>smart00355 ZnF_C2H2 zinc finger.
Probab=80.35 E-value=1.1 Score=29.15 Aligned_cols=21 Identities=43% Similarity=0.912 Sum_probs=19.6
Q ss_pred eecccccccccChHHHHHhhc
Q psy10095 57 FYCLHCARHFIDEHALKEHFR 77 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k 77 (680)
|-|..|++.|.+..+|..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 469999999999999999987
No 116
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.22 E-value=16 Score=42.04 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHHHHHHHHHHH
Q psy10095 174 RIDIS--EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLE-------PSQLEKKYLERKQLKAEIKKFDS 244 (680)
Q Consensus 174 ~~~~d--ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e-------~~e~e~l~~~~k~Lk~elk~Le~ 244 (680)
+++.| -|-|..|--+.|++..+++.|..+.+.+.++-..+++....-+ ..+.+++..+..+|++++..+..
T Consensus 51 GiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 51 GIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444 2455555555555555555444444444433333322100000 01123455566677777777777
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCC
Q psy10095 245 FMLDYQRNVIIKVLKLPNYLDNSTP 269 (680)
Q Consensus 245 ~l~~le~~l~~~~l~LPN~~h~~VP 269 (680)
.+.+++.+|.. +..-|+..+.|.|
T Consensus 131 ~l~~l~~~l~~-~~~~~~~~~~d~P 154 (472)
T TIGR03752 131 LIDQLQRRLAG-VLTGPSGGGSDLP 154 (472)
T ss_pred HHHHHHHHHhh-ccccCCCCCCCCC
Confidence 77777666643 3334556777888
No 117
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.97 E-value=29 Score=34.34 Aligned_cols=45 Identities=9% Similarity=-0.106 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP 269 (680)
+.........+++++..++.+...+......+-...+++..|++-
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 334445566666777777777777777777777788888777664
No 118
>PLN02788 phenylalanine-tRNA synthetase
Probab=79.78 E-value=28 Score=39.43 Aligned_cols=141 Identities=10% Similarity=0.116 Sum_probs=79.5
Q ss_pred CcEeecc-Ccccch-HHHHhhcCCC----CCCCCceEeecCCCccccccccCCCcee-eccchhhhhhhhhcccccCCCC
Q psy10095 331 NFMPFTN-TDLCKG-VIVEGYGDHY----LSPHDNMVLVNNENDLSEIGYEERRNHL-VGSAHMSMFCAYHTNHSVNVKD 403 (680)
Q Consensus 331 Gf~~i~~-P~~Vr~-~v~~g~G~~p----~~~~~~~~i~~~~~~~~~~~~~~~~l~L-igTaeevpl~~~~~~e~l~~~~ 403 (680)
||+.+.. |-+|-. .-+..-++-+ ++..++||+.. . +.| .=|+. +..-.|..+
T Consensus 88 gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~--~-----------~lLRTHTSa-~q~~~l~~~------- 146 (402)
T PLN02788 88 KFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDA--Q-----------TVLRCHTSA-HQAELLRAG------- 146 (402)
T ss_pred CcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecC--C-----------ccccCCCcH-HHHHHHHhC-------
Confidence 8999984 445543 3344444322 33457888852 1 122 11222 333333321
Q ss_pred CCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhH--------HHHHHHHHHHHHHHHHHH
Q psy10095 404 LPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHEN--------LCKEFQNIQSLLKSVMDK 475 (680)
Q Consensus 404 LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~--------S~~~~eeml~~~e~il~~ 475 (680)
.| ++++.|+|||++++ .=-..++|..+|-+.+. +.++ -.-.+..|....+.++..
T Consensus 147 ~~-~~~~~g~VyRrD~i---------------D~tH~p~FhQ~EG~~v~-~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~ 209 (402)
T PLN02788 147 HT-HFLVTGDVYRRDSI---------------DATHYPVFHQMEGVRVF-SPEEWEASGLDGTDLAAEDLKKTLEGLARH 209 (402)
T ss_pred CC-cEEEEeeEeecCCC---------------CcccCccceeEEEEEEe-cccccccccccccccCHHHHHHHHHHHHHH
Confidence 13 89999999999632 22345799999999885 2211 112366788888888888
Q ss_pred c-CCc-eEEeecCCCCCCcccccceeeeeeecCCCceeeeee
Q psy10095 476 L-NMK-YRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMD 515 (680)
Q Consensus 476 L-~Lp-yRVv~m~tgdLg~~a~kkyDIEvW~P~~~~Y~EisS 515 (680)
| |+. +|. .++ ..-+. .--..+++|..| .|.|+.-
T Consensus 210 lfg~~~~r~--~~s-~fPft-~Ps~e~dI~~~g--~WlEvlG 245 (402)
T PLN02788 210 LFGDVEMRW--VDA-YFPFT-NPSFELEIFFKG--EWLEVLG 245 (402)
T ss_pred hcCCCceEE--ecC-CCCCC-CCCeEEEEEECC--EEEEEee
Confidence 8 763 333 232 22221 333556667654 6999755
No 119
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=77.79 E-value=2.9 Score=45.02 Aligned_cols=110 Identities=10% Similarity=0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccc-cCCCceeeccchhhhhh
Q psy10095 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGY-EERRNHLVGSAHMSMFC 391 (680)
Q Consensus 313 ~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~-~~~~l~LigTaeevpl~ 391 (680)
+|-+|-|.-++..+..++||.+|.||.+-..-+-+.+= ..|... ...+++ +...+||..+-|
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL-------~~F~Te-----~~~~~~~~~~~l~L~TSPE----- 78 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHL-------HPFETE-----FLGPGGAKGKPLWLHTSPE----- 78 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccce-------eeeeeE-----EeccCccccceeeeecCcH-----
Confidence 55666666666666677899999999987764443332 112211 011111 234689985444
Q ss_pred hhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhH
Q psy10095 392 AYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHEN 457 (680)
Q Consensus 392 ~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~ 457 (680)
||++..|...+=| ...+|+|||.+ | +|=+.--.|+++|-..+--+...
T Consensus 79 -y~mKrLLAag~~~--ifql~kvfRN~-------E--------~G~~H~PEFTMLEWYrv~~d~~~ 126 (322)
T COG2269 79 -YHMKRLLAAGSGP--IFQLGKVFRNE-------E--------MGRLHNPEFTMLEWYRVGCDYYR 126 (322)
T ss_pred -HHHHHHHHccCCc--chhhhHHHhcc-------c--------ccccCCCceeEeeeeccCCcHHH
Confidence 5667666666544 45567888885 3 44444458999999984324443
No 120
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=77.51 E-value=21 Score=30.94 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 188 KYKEFVGVEKITTE-LEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFML 247 (680)
Q Consensus 188 ~~r~l~~~~~~L~~-~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~ 247 (680)
-|.+++.+++.|+. +|-++++.|+.+...|+-.+-.+...-+++...+...|..|+..+.
T Consensus 10 g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~ 70 (74)
T PF03449_consen 10 GYEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLA 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888887 7889999999887666543333444455555666666666665554
No 121
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=77.45 E-value=5.1 Score=50.56 Aligned_cols=116 Identities=8% Similarity=0.012 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhh
Q psy10095 313 KFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCA 392 (680)
Q Consensus 313 ~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~ 392 (680)
++.-++++..- .++.++||.+|-||-|.... | |-.-+ -|.... + .-+.++||.=+.|
T Consensus 771 r~Rs~i~~~iR-~fl~~~gFlEVeTPiL~~~~---g-Ga~a~----pF~t~~--~------~~~~~~yLriSPE------ 827 (1094)
T PRK02983 771 RARSAVVRAVR-ETLVARGFLEVETPILQQVH---G-GANAR----PFVTHI--N------AYDMDLYLRIAPE------ 827 (1094)
T ss_pred HHHHHHHHHHH-HHHHHCCCEEEeCCEeeccC---C-Ccccc----eeEeee--c------CCCccchhhcChH------
Confidence 34445555555 45567899999999997332 2 31111 132210 0 0123578853333
Q ss_pred hhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHH
Q psy10095 393 YHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 393 ~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~ 468 (680)
+|.+..+- .-+ =|+.-+|+|||.| |+ ++ -..-.|+.+|....-.+.++..++.|+|+..
T Consensus 828 LylKrLiv-gG~-erVFEIg~~FRnE---------~~---~~---rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~ 886 (1094)
T PRK02983 828 LYLKRLCV-GGV-ERVFELGRNFRNE---------GV---DA---THNPEFTLLEAYQAHADYDTMRDLTRELIQN 886 (1094)
T ss_pred HHHHHHHh-ccc-CceEEEcceecCC---------CC---CC---CccccccchhhhhhcCCHHHHHHHHHHHHHH
Confidence 23333221 122 3677789999998 33 34 3667899999876332677777777777643
No 122
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=75.90 E-value=9.5 Score=43.44 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhh
Q psy10095 310 NAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSM 389 (680)
Q Consensus 310 ~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevp 389 (680)
...++.-++...+- .++.++||+.|.||-|+-.. ..+.-+.|.+... +.+.||.=++-
T Consensus 132 Av~kirs~i~~a~~-eff~~~gF~eV~tP~i~~~~--------~EGg~elF~v~yf----------~~~a~LtqS~Q--- 189 (435)
T COG0017 132 AVFKIRSSILRAIR-EFFYENGFTEVHTPIITASA--------TEGGGELFKVDYF----------DKEAYLTQSPQ--- 189 (435)
T ss_pred HHHhHHHHHHHHHH-HHHHhCCcEEecCceEeccC--------CCCCceeEEEeec----------CcceEEecCHH---
Confidence 34455555555544 45567899999999997542 2233356666531 12367753321
Q ss_pred hhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHH
Q psy10095 390 FCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSL 468 (680)
Q Consensus 390 l~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~ 468 (680)
+..+.+-.. | =|...+|++||+|. ++|+= .+-+|..+|+=. ++ +.++..++.|+|+..
T Consensus 190 ----Lyke~~~~a-l-~rVf~igP~FRAE~------------s~T~R--HL~EF~~ld~Emaf~-~~~d~m~l~E~~i~~ 248 (435)
T COG0017 190 ----LYKEALAAA-L-ERVFTIGPTFRAEK------------SNTRR--HLSEFWMLDPEMAFA-DLNDVMDLAEELIKY 248 (435)
T ss_pred ----HHHHHHHHH-h-CceEEecCceecCC------------CCCcc--hhhhHheecceeccC-cHHHHHHHHHHHHHH
Confidence 111111111 1 35677899999983 23322 577999999855 66 677777777777644
No 123
>KOG0554|consensus
Probab=74.68 E-value=10 Score=42.61 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=74.4
Q ss_pred EeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccch
Q psy10095 307 YLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAH 386 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTae 386 (680)
..|..+++..||. ||...+.++++|+.|.||-|-..+. ||.| ++|.+.... +... ..-+...||.-++-
T Consensus 127 ~~~av~RvRs~~~-~a~h~ffq~~~F~~i~tPiiTt~DC-EGaG-------E~F~vtt~~-d~~~-~fFg~p~fLTVSgQ 195 (446)
T KOG0554|consen 127 KVGAVLRVRSALA-FATHSFFQSHDFTYINTPIITTNDC-EGAG-------EVFQVTTLT-DYSK-DFFGRPAFLTVSGQ 195 (446)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCceEecCcEeeccCC-CCCc-------ceEEEEecC-cccc-cccCCceEEEEece
Confidence 4577777777765 5666677889999999999877643 4444 567665311 1110 01134578865443
Q ss_pred hhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHH-HHHH
Q psy10095 387 MSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKE-FQNI 465 (680)
Q Consensus 387 evpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~-~eem 465 (680)
.-|-+| ...|- +...+|++||+| +|+-+.. +-.|..+| +|-+-.. ++++
T Consensus 196 -LhlE~~-------a~~Ls-rvyTfgP~FRAE---------nS~tsRH-----LAEFwMlE-------aE~AF~~sl~d~ 245 (446)
T KOG0554|consen 196 -LHLEAM-------ACALS-RVYTFGPTFRAE---------NSHTSRH-----LAEFWMLE-------AELAFAESLDDL 245 (446)
T ss_pred -ehHHHH-------Hhhhc-ceEeeccceecc---------cCCchhH-----Hhhhhhhh-------hHHHHHHHHHHH
Confidence 112221 11222 233456666666 3443322 12355544 3333222 6666
Q ss_pred HHHHHHHHHHcCCceEEeecCCCCCCc
Q psy10095 466 QSLLKSVMDKLNMKYRICKAPADVLHT 492 (680)
Q Consensus 466 l~~~e~il~~L~LpyRVv~m~tgdLg~ 492 (680)
+..+++.++.+- =.+++=|-.||.+
T Consensus 246 m~~~e~~~K~mi--k~llek~~edmel 270 (446)
T KOG0554|consen 246 MSCAEAYIKHMI--KYLLEKCIEDMEL 270 (446)
T ss_pred HHHHHHHHHHHH--HHHHhhccchhhe
Confidence 666666665431 1234556666633
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.56 E-value=32 Score=34.83 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFML 247 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~ 247 (680)
.....+.....++..+++.++.....+...|...+..... .++++.+.++..+|+.+++.|++++.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~--~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE--SEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666777777777777776665432221 23455566666666666666665555
No 125
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.24 E-value=42 Score=35.25 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=25.0
Q ss_pred ccchHHhhcCHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 153 SYDVKHVLENEDLIVNQLKQRRIDI--SEFDFTQMREKYKEFVGVEKITTELEHKLVDLE 210 (680)
Q Consensus 153 mLD~k~i~~n~e~v~~~l~~R~~~~--dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i 210 (680)
++|...+++ .++.+|-+-|+.. -+..+..+-+.|-+++.+.+++++++.++-+..
T Consensus 102 hiD~elvrk---El~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 102 HIDVELVRK---ELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred ccCHHHHHH---HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777764 3333333333211 122233333444455555555555555554443
No 126
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=72.02 E-value=68 Score=35.64 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=58.5
Q ss_pred hHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCCChhhHHHHHHHH
Q psy10095 156 VKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQY---LLVNKSKLEPSQLEKKYLER 232 (680)
Q Consensus 156 ~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~---~k~~~~~~e~~e~e~l~~~~ 232 (680)
++.+.+..+.|.+.|..-.+-.|.+++..+..++.++..-++..+..++... .+.. +.....+ .+ + .
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~-~l~~a~~~l~~~~D---~e---m---~ 78 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQE-DLEDAKEMLAEEKD---PE---M---R 78 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC---HH---H---H
Confidence 4555566666766666655556778888888777777665555444443222 2222 1111100 11 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCeeEE
Q psy10095 233 KQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYETIYE 277 (680)
Q Consensus 233 k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP~~~n~vv~ 277 (680)
.-.+++|.++++.+.+++++|.. |.||-.|++ +.|++++
T Consensus 79 ema~~Ei~~~~~~~~~le~~L~~--lLlPkDpnd----~knvilE 117 (363)
T COG0216 79 EMAEEEIKELEAKIEELEEELKI--LLLPKDPND----DKNIILE 117 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCC----CcCeEEE
Confidence 22346777888888888777744 345655543 3466654
No 127
>KOG0555|consensus
Probab=71.05 E-value=6.9 Score=43.94 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=63.1
Q ss_pred cceEEEeCchHHHH----HHHHHHHHHHHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCC
Q psy10095 302 RLDIHYLGNAAKFE----YLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEER 377 (680)
Q Consensus 302 srfyyL~G~gA~LE----~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~ 377 (680)
+|-..++|+.+..- -++.+-+-|.+. ..||++|+||.||...|--|. +.|++.-. +.
T Consensus 229 nrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~-~~~ytEVtPPtmVQTQVEGGs--------TLFkldYy----------GE 289 (545)
T KOG0555|consen 229 NRHLVIRGENASKVLKARAALLRAMRDHYF-ERGYTEVTPPTMVQTQVEGGS--------TLFKLDYY----------GE 289 (545)
T ss_pred cceeEEechhHHHHHHHHHHHHHHHHHHHH-hcCceecCCCceEEEEecCcc--------eEEeeccc----------Cc
Confidence 57788999887653 356666666554 469999999999998764443 34554421 22
Q ss_pred CceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE
Q psy10095 378 RNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV 450 (680)
Q Consensus 378 ~l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~ 450 (680)
+.||.-++- +|....++.- -...+++.+||+|. |+-+ =.+..|++||-=+
T Consensus 290 eAyLTQSSQ------LYLEtclpAl---gdvy~I~~SyRAEk---------SrTR-----RHLsEytHVEaE~ 339 (545)
T KOG0555|consen 290 EAYLTQSSQ------LYLETCLPAL---GDVYCIQQSYRAEK---------SRTR-----RHLSEYTHVEAEC 339 (545)
T ss_pred hhhccchhH------HHHHHhhhhc---CceeEecHhhhhhh---------hhhh-----hhhhhheeeeeec
Confidence 356643211 1211111110 13567888899972 3222 1245889999765
No 128
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=70.95 E-value=2.6 Score=29.08 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=17.5
Q ss_pred ecccccccccChHHHHHhhcc
Q psy10095 58 YCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 58 yC~~C~r~F~~~~~l~~H~k~ 78 (680)
-|..|+|.| ...+|..|.+.
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHHh
Confidence 599999999 79999999763
No 129
>KOG3454|consensus
Probab=70.67 E-value=1.5 Score=43.35 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=42.6
Q ss_pred eeeccccccccc--ChHHHHHhhccchhhhhhhhc-----ccCCCCHHHHHHhcCCCCC
Q psy10095 56 QFYCLHCARHFI--DEHALKEHFRTKVHKRRLKAL-----EVEPYTVEESERAAGYGSY 107 (680)
Q Consensus 56 q~yC~~C~r~F~--~~~~l~~H~k~K~HKrr~K~l-----~~~pyt~~eae~aag~g~~ 107 (680)
.|||-.|+.|-. +.++.++|.-++.|++-||.- +|..-++.|+-.+++.++.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqAq~liD~~~~~~~~~~ 61 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQAQKLIDETILRFIGKK 61 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 589999998864 567899999999999999976 3567777888888877743
No 130
>KOG2482|consensus
Probab=69.72 E-value=2 Score=47.04 Aligned_cols=29 Identities=45% Similarity=0.886 Sum_probs=26.8
Q ss_pred ceeecccccccccChHHHHHhhccchhhh
Q psy10095 55 AQFYCLHCARHFIDEHALKEHFRTKVHKR 83 (680)
Q Consensus 55 gq~yC~~C~r~F~~~~~l~~H~k~K~HKr 83 (680)
-.+-|+.|-+-|-|..+|..|+|-|.|+|
T Consensus 194 ~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 194 ERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred hhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 45689999999999999999999999986
No 131
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=69.58 E-value=24 Score=34.77 Aligned_cols=32 Identities=3% Similarity=-0.230 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10095 187 EKYKEFVGVEKITTELEHKLVDLEQYLLVNKS 218 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~ 218 (680)
+-|.+|+.+++.|+.+|-++.+.|+.+...++
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GD 42 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGD 42 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 34678888899999889999999988765554
No 132
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.43 E-value=28 Score=34.81 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=6.3
Q ss_pred HHHHHHhcCCCC
Q psy10095 166 IVNQLKQRRIDI 177 (680)
Q Consensus 166 v~~~l~~R~~~~ 177 (680)
.+.--..||+-+
T Consensus 95 ~~~fraQRN~YI 106 (192)
T PF05529_consen 95 AKKFRAQRNMYI 106 (192)
T ss_pred HHHHHHHHhHHH
Confidence 444556666543
No 133
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.41 E-value=47 Score=35.12 Aligned_cols=29 Identities=3% Similarity=-0.001 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLE 210 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i 210 (680)
+..+..++..+..++..++++.+.....+
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666665555555544
No 134
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.57 E-value=48 Score=35.61 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVL 258 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l 258 (680)
+.++-.....++.+++.|...-.+++..+..+. .+..++..++++++.+|+.+++.+.+-++-|...+.
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~--------~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ--------KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555554444331 234556667777777777777776665555544433
No 135
>PHA00616 hypothetical protein
Probab=68.16 E-value=2.2 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=20.2
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|-|.+|++-|.+...|..|.++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 6799999999999999999954
No 136
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.80 E-value=72 Score=30.32 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
.|..+..+...++.++..|.+.|+.++.+|-.+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777787777777655
No 137
>PRK11637 AmiB activator; Provisional
Probab=66.40 E-value=47 Score=37.40 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 227 KKYLERKQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 227 ~l~~~~k~Lk~elk~Le~~l~~le~~l 253 (680)
.+..++..+.++|..+++.+...++.+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.80 E-value=42 Score=35.47 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10095 187 EKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLP 261 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LP 261 (680)
.+|+.|..+++.++.+.+.+..++..+.. ..+.+..+...++.++..++..+.++++.+...+..|+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~--------~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELME--------EIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554421 23334444555555555555555555555555555544
No 139
>KOG1994|consensus
Probab=64.79 E-value=3.5 Score=42.91 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=22.7
Q ss_pred CceeecccccccccChHHHHHhhcc
Q psy10095 54 EAQFYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 54 ~gq~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
.|.|||+.|+--|.|..+|-.|.-+
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCPG 261 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCPG 261 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCCC
Confidence 4899999999999999999999754
No 140
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.60 E-value=55 Score=33.80 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLV 207 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~ls 207 (680)
+.+.++-.+..+++.+++++++.-++..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~ 120 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRT 120 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444445555444444444433333
No 141
>KOG3032|consensus
Probab=64.42 E-value=2e+02 Score=30.55 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=32.2
Q ss_pred CceeecccccccccChHHHHHhhccchhhhhhhhcc
Q psy10095 54 EAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALE 89 (680)
Q Consensus 54 ~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~ 89 (680)
.||--|+-|----- ..--+.|.-||.|+--|-.|+
T Consensus 33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK 67 (264)
T KOG3032|consen 33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK 67 (264)
T ss_pred CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence 79999999987766 889999999999999999998
No 142
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.05 E-value=75 Score=34.64 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVII 255 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~ 255 (680)
+..+-+.+.++..++..+++.|..++..++.+.. .+.+++.+..++.++++++++...++...+..
T Consensus 22 ~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e--------~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 22 IEELKEKRDELRKEASELAEKRDELNAKVRELRE--------KAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666777777766666665521 23445555555555555555555555444443
No 143
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=61.34 E-value=36 Score=33.53 Aligned_cols=32 Identities=6% Similarity=-0.060 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy10095 187 EKYKEFVGVEKITTE-LEHKLVDLEQYLLVNKS 218 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~-~rn~lsk~i~~~k~~~~ 218 (680)
+=|.+++.+++.|+. +|-++.+.|+.+...++
T Consensus 10 ~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GD 42 (157)
T PRK01885 10 EGYARLKQELDYLWREERPEVTQKVSWAASLGD 42 (157)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCC
Confidence 346778888888876 78999999988765554
No 144
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=60.53 E-value=33 Score=33.78 Aligned_cols=31 Identities=6% Similarity=-0.039 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC
Q psy10095 188 KYKEFVGVEKITT-ELEHKLVDLEQYLLVNKS 218 (680)
Q Consensus 188 ~~r~l~~~~~~L~-~~rn~lsk~i~~~k~~~~ 218 (680)
=|.+++.+++.|+ .+|-++++.|+.+...++
T Consensus 9 G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GD 40 (156)
T TIGR01461 9 GYEKLKQELNYLWREERPEVTQKVTWAASLGD 40 (156)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHcCC
Confidence 3677888888887 478999999988766555
No 145
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.16 E-value=58 Score=34.07 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy10095 230 LERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269 (680)
Q Consensus 230 ~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~VP 269 (680)
.++.+|..++.+++....++.--+...+-.|=.++..|+|
T Consensus 84 ~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~P 123 (251)
T PF11932_consen 84 QELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLP 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444555555555544444444455555555566666777
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.31 E-value=1.1e+02 Score=32.24 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 187 EKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
....++..+.+.|..+|....+.+++.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666665555555544
No 147
>PRK11637 AmiB activator; Provisional
Probab=57.25 E-value=1.1e+02 Score=34.51 Aligned_cols=30 Identities=3% Similarity=0.061 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRNVI 254 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~l~ 254 (680)
+..+..++.+++.+|..+++.+...-..++
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554433333
No 148
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.78 E-value=54 Score=38.61 Aligned_cols=226 Identities=9% Similarity=0.091 Sum_probs=114.2
Q ss_pred HHHhhCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCC
Q psy10095 325 YFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDL 404 (680)
Q Consensus 325 ~~~~~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~L 404 (680)
.++..+||++|-||.+.++ -|.+..+ |-+.+ .+ .....|-.|-+- +-+ +..|-.+-+
T Consensus 153 ~~ld~~gF~EiETPiLtkS--------TPEGARD-fLVPS---Rv-----~~G~FYALPQSP-Qlf-----KQLLMvsGf 209 (585)
T COG0173 153 NFLDDQGFLEIETPILTKS--------TPEGARD-FLVPS---RV-----HPGKFYALPQSP-QLF-----KQLLMVAGF 209 (585)
T ss_pred HHHhhcCCeEeecCccccC--------CCccccc-ccccc---cc-----CCCceeecCCCH-HHH-----HHHHHHhcc
Confidence 3445579999999999775 4555433 22221 10 011234444221 101 111111111
Q ss_pred CceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHHHHH--HcCCceE
Q psy10095 405 PVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKSVMD--KLNMKYR 481 (680)
Q Consensus 405 PlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~il~--~L~LpyR 481 (680)
=||.=+.+|||-| ---+. |+=.|+.|-|=. |+ +.++-..+-|+|+..+=.-+. .|..||.
T Consensus 210 -dRYyQIarCFRDE--------DlRaD-------RQPEFTQiD~EmSF~-~~edv~~~~E~l~~~vf~~~~~i~l~~pFp 272 (585)
T COG0173 210 -DRYYQIARCFRDE--------DLRAD-------RQPEFTQIDLEMSFV-DEEDVMELIEKLLRYVFKEVKGIELKTPFP 272 (585)
T ss_pred -cceeeeeeeeccc--------ccccc-------cCCcceeEeEEeecC-CHHHHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 1566666666665 33333 456999998855 77 789888888888866544333 4455554
Q ss_pred EeecC---------CCCCCc--------ccccceeeeeee--cCCCceeeeeecCcchhhhHHHHHHHHHHHHhhhccc-
Q psy10095 482 ICKAP---------ADVLHT--------SESHRLEYQVYS--YSLNSWVTCMDLNAKVYIQIVFFIQEMSWMKKLAEKI- 541 (680)
Q Consensus 482 Vv~m~---------tgdLg~--------~a~kkyDIEvW~--P~~~~Y~EisS~Sn~~~~q~~~~~~e~~~~~k~~~~l- 541 (680)
.+--. -=||-+ .-.+..+..||. ...+.-...-.+.+...+.+..--...+|.+.++.+-
T Consensus 273 rmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGL 352 (585)
T COG0173 273 RMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGL 352 (585)
T ss_pred cccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCce
Confidence 43110 001111 113334555554 2223333344455544454444334567777775443
Q ss_pred ---cccccCCCCcccchHHHHHHHHHHhhhcCCcccchhhhhhchhHHHHHHHH
Q psy10095 542 ---IPNIDENIGMEYMSFLKRTADRLCMKWNRSYAQVLGWLRTKCQISIIRTIS 592 (680)
Q Consensus 542 ---~~s~dG~~g~e~~~F~krLA~~Ls~Kw~~~ys~~i~wir~~~sfailr~~~ 592 (680)
.+.-+|.-||-+..+-.--...|..+-+-.-|..+-++-- ...+..++.
T Consensus 353 a~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~--~~~~~~~~l 404 (585)
T COG0173 353 AYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVAD--KKKVVNKAL 404 (585)
T ss_pred EEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecC--cHHHHHHHH
Confidence 2223454444444333355566777777777777666544 334444333
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.53 E-value=1.1e+02 Score=33.07 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVI 254 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~ 254 (680)
+...+.++..+..+...++.+-..+-.+|..+. ++...+.++..+++.+|+.|+.++.++++.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~--------~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQ--------SKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444433333333321 12334455555555555555555555555544
No 150
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.86 E-value=94 Score=33.94 Aligned_cols=61 Identities=16% Similarity=0.029 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 196 EKITTELEHKLVDLEQYLLVNKS---KLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 196 ~~~L~~~rn~lsk~i~~~k~~~~---~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
...+++..+.|..++..++.... ..++++++.++.+...++.+|...+..+.+++.++..+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555433221 11234455555555555555555444444554444433
No 151
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=53.06 E-value=55 Score=31.77 Aligned_cols=31 Identities=3% Similarity=-0.073 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy10095 188 KYKEFVGVEKITTE-LEHKLVDLEQYLLVNKS 218 (680)
Q Consensus 188 ~~r~l~~~~~~L~~-~rn~lsk~i~~~k~~~~ 218 (680)
=|++++.+++.|++ .|-++.+.++.+...++
T Consensus 6 g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gD 37 (151)
T TIGR01462 6 GYEKLKEELEYLKTVKRPEISEEIAEAREHGD 37 (151)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHCCC
Confidence 46778888888985 68899988888755443
No 152
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=52.81 E-value=1.8e+02 Score=34.24 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhCCcEeeccCcccchHH-HHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcc
Q psy10095 318 IPIILKDYFTVKHNFMPFTNTDLCKGVI-VEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTN 396 (680)
Q Consensus 318 Li~y~ld~~~~~~Gf~~i~~P~~Vr~~v-~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~ 396 (680)
+.+-..+.+ ...||.++.+..|+.... +..-|+.+.. ..+.+.+.-++- .+.-+..|+++- |-++-.|
T Consensus 364 ~~~~ir~~L-~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~--~~i~l~NPls~e----~svLRtsLlpgL----L~~~~~N 432 (552)
T PRK09616 364 LERAIRDLM-VGLGFQEVMNFTLTSEEVLFEKMNLEPEE--DYVEVLNPISED----YTVVRTSLLPSL----LEFLSNN 432 (552)
T ss_pred HHHHHHHHH-HhCCcceeccceEechHHHHHHhCCCCCC--CeEEEcCCCccc----hheEeccchHHH----HHHHHhc
Confidence 334444444 347999999999999976 6766643211 245555311100 001123455421 1222222
Q ss_pred cccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHc
Q psy10095 397 HSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKL 476 (680)
Q Consensus 397 e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L 476 (680)
. -...|++++-+|++|+++ +.+ .+ ..+|+.++-.+ +++.. .-|.++....+.++..|
T Consensus 433 ~---~~~~~~~lFEiG~Vf~~~----------~~~-~~----~~~e~~~l~~~-~~g~~----~df~dlKg~ve~ll~~l 489 (552)
T PRK09616 433 K---HREYPQKIFEIGDVVLID----------EST-ET----GTRTERKLAAA-IAHSE----ASFTEIKSVVQALLREL 489 (552)
T ss_pred c---CCCCCeeEEEeeEEEecC----------Ccc-cc----CcchhhEEEEE-EECCC----CCHHHHHHHHHHHHHHc
Confidence 2 245689999999999874 111 11 13577766655 44231 23889999999999999
Q ss_pred CCceEE
Q psy10095 477 NMKYRI 482 (680)
Q Consensus 477 ~LpyRV 482 (680)
|+++..
T Consensus 490 gi~~~~ 495 (552)
T PRK09616 490 GIEYEV 495 (552)
T ss_pred CCeEEE
Confidence 997555
No 153
>PRK11546 zraP zinc resistance protein; Provisional
Probab=52.55 E-value=1.8e+02 Score=28.57 Aligned_cols=75 Identities=7% Similarity=-0.009 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 177 ISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 177 ~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
++.++-..++..+.+...+...||++--.-..++..+..+. .. |.+ .++.|.+||..|..++.+.-.++...
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~-~p---D~~----kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTAN-PP---DSS----KINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC---CHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777778888777665566666654332 22 111 34556666666666666555555555
Q ss_pred HHc
Q psy10095 257 VLK 259 (680)
Q Consensus 257 ~l~ 259 (680)
+-+
T Consensus 116 ~~k 118 (143)
T PRK11546 116 MAE 118 (143)
T ss_pred HHH
Confidence 544
No 154
>KOG2462|consensus
Probab=52.43 E-value=7.3 Score=41.71 Aligned_cols=29 Identities=38% Similarity=0.838 Sum_probs=24.6
Q ss_pred CCceeecccccccccChHHHHHhhccchh
Q psy10095 53 GEAQFYCLHCARHFIDEHALKEHFRTKVH 81 (680)
Q Consensus 53 G~gq~yC~~C~r~F~~~~~l~~H~k~K~H 81 (680)
|.--|-|.||.|-|.|..+|.+|+.|=.+
T Consensus 212 GEKPF~C~hC~kAFADRSNLRAHmQTHS~ 240 (279)
T KOG2462|consen 212 GEKPFSCPHCGKAFADRSNLRAHMQTHSD 240 (279)
T ss_pred CCCCccCCcccchhcchHHHHHHHHhhcC
Confidence 44558999999999999999999988543
No 155
>KOG2893|consensus
Probab=50.86 E-value=7.7 Score=40.77 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=24.4
Q ss_pred ecccccccccChHHHHHhhccchhhhh
Q psy10095 58 YCLHCARHFIDEHALKEHFRTKVHKRR 84 (680)
Q Consensus 58 yC~~C~r~F~~~~~l~~H~k~K~HKrr 84 (680)
.|-.|.|-|.|+..|..|+|-|-.|=-
T Consensus 12 wcwycnrefddekiliqhqkakhfkch 38 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKHFKCH 38 (341)
T ss_pred eeeecccccchhhhhhhhhhhccceee
Confidence 899999999999999999999976543
No 156
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.04 E-value=1.7e+02 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRN 252 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~ 252 (680)
.|.+-|++...+..+-+.|....-..+..|+.+... ...+-.....++..+..++..+..++..
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~--------~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAK--------IKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777766666666666655321 1112234444555555555555554443
No 157
>KOG2785|consensus
Probab=48.89 E-value=8 Score=43.07 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=33.5
Q ss_pred CCceeecccccccccChHHHHHhhccchhhhhhhhccc
Q psy10095 53 GEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEV 90 (680)
Q Consensus 53 G~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~~ 90 (680)
+.--+||-.|.|-|.+..+...|.++|.|+-.++.+.-
T Consensus 65 ~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 65 AESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred cccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 33567999999999999999999999999999887643
No 158
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.39 E-value=2.6e+02 Score=28.01 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 176 DISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 176 ~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l 253 (680)
.++++.|+..-+.+++.......++.+...+..++ .++..+.+.|..++..|++.+..++++.
T Consensus 79 ~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~---------------~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 79 SLTLQDVISFLQNLKTTNPSDQALQKENERLKNQN---------------ESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred cCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776666654433444444433333332 2333444455555555555555555543
No 159
>KOG2837|consensus
Probab=47.50 E-value=4 Score=43.47 Aligned_cols=37 Identities=30% Similarity=0.687 Sum_probs=33.2
Q ss_pred eeecccccccccChHHHHHhhccchhhhhhhhcccCC
Q psy10095 56 QFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEP 92 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~~~p 92 (680)
.+||..|-|-|-|++....|..|-.|-|.+-...+.|
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~Np 61 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFALNP 61 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHHhCc
Confidence 3799999999999999999999999999987766555
No 160
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=47.37 E-value=40 Score=29.73 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYL 264 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~ 264 (680)
+.++++..++|.++|..||.++.++|....+.-....|++
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNii 43 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNII 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCe
Confidence 4566777888999999999999999988877344444444
No 161
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.10 E-value=1.4e+02 Score=34.09 Aligned_cols=74 Identities=26% Similarity=0.256 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 183 TQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKS--KLEP---SQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 183 ~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~--~~e~---~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
..+.+++.++..++++++.+..++.+.+..+...+. ...+ ...+.++....++.+++++|++++.++++++...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555666666666666666655543211 0001 1233455566677777777777777777766655
No 162
>PF14282 FlxA: FlxA-like protein
Probab=45.80 E-value=1.3e+02 Score=27.60 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 196 EKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKV 257 (680)
Q Consensus 196 ~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~ 257 (680)
+..|+.....|.+.|+.+..+.+- ..+........|..+|..|+.++..++.+.....
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~----~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDL----DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666655432221 2344566778888899999998888877665543
No 163
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=44.05 E-value=12 Score=30.71 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=18.7
Q ss_pred eeecccccccccChHHHHHhh
Q psy10095 56 QFYCLHCARHFIDEHALKEHF 76 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~ 76 (680)
-+||+-|+-.|.|...|..|-
T Consensus 27 ~~YC~~Cg~~Y~d~~dL~~~C 47 (55)
T PF13821_consen 27 HNYCFWCGTKYDDEEDLERNC 47 (55)
T ss_pred CceeeeeCCccCCHHHHHhCC
Confidence 469999999999999998764
No 164
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.69 E-value=2.3e+02 Score=29.84 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=62.5
Q ss_pred HhhcCHHHHHHHHHhcCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q psy10095 158 HVLENEDLIVNQLKQRRIDISE--FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQL 235 (680)
Q Consensus 158 ~i~~n~e~v~~~l~~R~~~~dl--d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~L 235 (680)
.|..+.+.+...|+.....++. ..+..++.+...+..+++.|..+-+..+.....+.. ..+....++..|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~--------~t~~t~~~a~~L 92 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNN--------NTERTLQRAQDL 92 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 3445567778888877766664 557777888888888888888888877776665532 234556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10095 236 KAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 236 k~elk~Le~~l~~le~~l~~~ 256 (680)
...|..+...+.++-+++..+
T Consensus 93 ~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 93 EQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777766665555433
No 165
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.59 E-value=2.1e+02 Score=33.28 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQ 250 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le 250 (680)
.++..+..+-+.++.+-++|+++...+..+|.+...+....-..+.++++.+..++...|..|..++..+.
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666777788888889999998888888888776543222123567788888889999999988886543
No 166
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.74 E-value=2.7e+02 Score=29.13 Aligned_cols=68 Identities=7% Similarity=0.009 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVII 255 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~ 255 (680)
++-..+-.+|+.+..+++.|+...+.+++.+.... .++.++..+..++..--.++...+.+.-+.+..
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~--------~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQE--------QELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666665431 134455555555555555555555555555544
No 167
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=42.67 E-value=2.2e+02 Score=31.95 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=38.7
Q ss_pred CCCCccchHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 149 NVSPSYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHK 205 (680)
Q Consensus 149 ~~~PmLD~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~ 205 (680)
.+.-.+|++.+....+.+.+.+..-.+--|.+...++..++..+...++.++..+..
T Consensus 18 ~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~ 74 (364)
T TIGR00020 18 TVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNS 74 (364)
T ss_pred HHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888887777777777766555446677777777777777766666665543
No 168
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=42.54 E-value=53 Score=38.45 Aligned_cols=96 Identities=11% Similarity=0.281 Sum_probs=59.6
Q ss_pred CCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCc-
Q psy10095 401 VKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMK- 479 (680)
Q Consensus 401 ~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~Lp- 479 (680)
-...|++++-+|+||+++. . . +...|--+++- ..+ . .+++. -|.++...++.++..||+.
T Consensus 204 Rg~~piRLFEIGRVFr~d~---------~-e-E~t~La~llsG---s~W--~-~~e~v--DFfDlKGiLE~LL~~LGI~~ 264 (529)
T PRK06253 204 KRPLPIKLFSIDRCFRREQ---------R-E-DASRLMTYHSA---SCV--I-ADEDV--TVDDGKAVAEGLLSQFGFTK 264 (529)
T ss_pred CCCCCEEEEEEeeEEecCC---------c-c-chhheeEEEEc---ccc--c-cCCCC--CHHHHHHHHHHHHHHcCCCe
Confidence 4678999999999998851 1 1 22222211111 111 1 12221 2889999999999999997
Q ss_pred eEEeecCC--CCCCcccccceeeeeeecCCCceeeeeecC
Q psy10095 480 YRICKAPA--DVLHTSESHRLEYQVYSYSLNSWVTCMDLN 517 (680)
Q Consensus 480 yRVv~m~t--gdLg~~a~kkyDIEvW~P~~~~Y~EisS~S 517 (680)
++.. ++ ..=.+...+..+|-+|.|..+.|.+|..+-
T Consensus 265 i~f~--pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fG 302 (529)
T PRK06253 265 FKFR--PDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFG 302 (529)
T ss_pred EEEe--ecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEE
Confidence 5552 22 112245667789999999887776666443
No 169
>KOG0804|consensus
Probab=42.02 E-value=2.4e+02 Score=32.60 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy10095 228 KYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPN 262 (680)
Q Consensus 228 l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN 262 (680)
+.+.-.+.++.+...++++.+|++++.+++..|-+
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 34444555666777778888888888887776644
No 170
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=41.90 E-value=2.3e+02 Score=31.85 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=37.4
Q ss_pred cCCCCccchHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 148 SNVSPSYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEH 204 (680)
Q Consensus 148 ~~~~PmLD~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn 204 (680)
..+.-.||++.+....+.+.+.+..-.+--|.....++..++..+...++.++..+.
T Consensus 17 ~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~ 73 (367)
T PRK00578 17 ENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQ 73 (367)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888777777777776655544666677777777766666666655543
No 171
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.21 E-value=1.9e+02 Score=33.49 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 179 EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214 (680)
Q Consensus 179 ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k 214 (680)
-+.+.++.++.++++.++..++.+++.+...++-+.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888788788777777777665543
No 172
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.06 E-value=2.2e+02 Score=23.91 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 163 EDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 163 ~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
.......|.......+++.+..+-.+++.+..++...+..-+.+...-..+
T Consensus 17 l~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 17 LQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455553333445788899999999999988888777777777666555
No 173
>KOG4167|consensus
Probab=41.04 E-value=9.9 Score=45.46 Aligned_cols=31 Identities=19% Similarity=0.493 Sum_probs=26.3
Q ss_pred CceeecccccccccChHHHHHhhccchhhhh
Q psy10095 54 EAQFYCLHCARHFIDEHALKEHFRTKVHKRR 84 (680)
Q Consensus 54 ~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr 84 (680)
-|-|-|-+|+|-|.--+++.+|+|+-.-|-|
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr~q~~ 820 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHRQQEE 820 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4889999999999999999999987544433
No 174
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.78 E-value=2.5e+02 Score=24.67 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------------hhhHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLE--------------PSQLEKKYLERKQLKAEIKKFDSF 245 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e--------------~~e~e~l~~~~k~Lk~elk~Le~~ 245 (680)
.++..+..++..+..++..|....+.+...+..+....++.. ++-.+.+......+..+|+.++..
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888888888888888777776666643211100 011333444555666666666666
Q ss_pred HHHHHHHHHH
Q psy10095 246 MLDYQRNVII 255 (680)
Q Consensus 246 l~~le~~l~~ 255 (680)
+..+++++..
T Consensus 85 ~~~l~~~l~~ 94 (106)
T PF01920_consen 85 LKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 175
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=39.32 E-value=6.8e+02 Score=29.18 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=38.5
Q ss_pred CcEeecc--CcccchHHHHhhcCCC----CCCCCceEeecCCCccccccccCCCceeeccc-hhhhhhhhhcccccCCCC
Q psy10095 331 NFMPFTN--TDLCKGVIVEGYGDHY----LSPHDNMVLVNNENDLSEIGYEERRNHLVGSA-HMSMFCAYHTNHSVNVKD 403 (680)
Q Consensus 331 Gf~~i~~--P~~Vr~~v~~g~G~~p----~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTa-eevpl~~~~~~e~l~~~~ 403 (680)
||+.+.. |..--..-++.-|+-+ ++..+.||+.. . +|.-|- |-+.+-.|-.+ .. ..
T Consensus 67 gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~~--~------------~lLRTHTSa~q~~~~~~~--~~-~~ 129 (460)
T TIGR00469 67 LFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYINE--Q------------HLLRAHTSAHELECFQGG--LD-DS 129 (460)
T ss_pred CeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEecC--C------------ceeCCCCcHHHHHHHHhc--cc-cC
Confidence 7888777 8333334455555433 33457888852 1 333332 11222222222 11 12
Q ss_pred CCce--EeeeCcccCCC
Q psy10095 404 LPVK--YVTSGKQYGFH 418 (680)
Q Consensus 404 LPlK--y~a~s~cyr~E 418 (680)
-|++ +++.|.|||.+
T Consensus 130 ~~~~~~~i~~G~VYRrD 146 (460)
T TIGR00469 130 DNIKSGFLISADVYRRD 146 (460)
T ss_pred CCcceeeEeecceeeCC
Confidence 4888 99999999996
No 176
>KOG2629|consensus
Probab=39.01 E-value=3.3e+02 Score=29.77 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKL 260 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~L 260 (680)
....|+++..++...++.|..+--++++++..-+..- +.++..++.-.-++...+.+++.++..+. .+++..
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~El----s~~L~~l~~~~~~~s~~~~k~esei~~Ik----~lvln~ 194 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSEL----SRALASLKNTLVQLSRNIEKLESEINTIK----QLVLNM 194 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHhcc
Confidence 3445566666666666666666666665554321100 00111222222233444555555554443 677888
Q ss_pred CCCCCCCCCCCC
Q psy10095 261 PNYLDNSTPEVY 272 (680)
Q Consensus 261 PN~~h~~VP~~~ 272 (680)
-|++.|.+|...
T Consensus 195 ~~f~~p~~p~~~ 206 (300)
T KOG2629|consen 195 SNFAPPVAPSSA 206 (300)
T ss_pred cccCCCCCcccC
Confidence 999999998643
No 177
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.01 E-value=1.7e+02 Score=30.69 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 187 EKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l 253 (680)
++|..+..+++.+++++.++.+.+.+. + ..++.-++..+..+++.+|..++.+++.+++++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka---~---~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKA---K---TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777888888888777766532 1 123344444566666666766666666665543
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.00 E-value=1.9e+02 Score=32.34 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLE 210 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i 210 (680)
+..+-.+|+..+.++.+++.+-++.|..+
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344445555555555554444444443
No 179
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.88 E-value=2.9e+02 Score=25.38 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 222 PSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 222 ~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
..+..+|..++.+++-+++.+++++..++..+..+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999887665443
No 180
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=37.67 E-value=17 Score=29.28 Aligned_cols=25 Identities=32% Similarity=0.780 Sum_probs=22.6
Q ss_pred ecccccccccChHHHHHhhccchhhhhh
Q psy10095 58 YCLHCARHFIDEHALKEHFRTKVHKRRL 85 (680)
Q Consensus 58 yC~~C~r~F~~~~~l~~H~k~K~HKrr~ 85 (680)
||--|--.|.+ |..|..|+.|++=.
T Consensus 7 YCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 7 YCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred cCccccchhhh---HHHHhCCHHHHHHH
Confidence 99999999984 99999999999864
No 181
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=36.70 E-value=12 Score=41.90 Aligned_cols=105 Identities=14% Similarity=0.288 Sum_probs=60.7
Q ss_pred cccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhHHHHHHHHHHHHHHHHHHHc
Q psy10095 397 HSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKL 476 (680)
Q Consensus 397 e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L 476 (680)
++++..++|+|++++-||||+|+ +-|..-|+.-|--+.| ++. .+-+ .+.=-..||.+|..+
T Consensus 199 ~i~~r~~~PlklFSIDRCFRREQ-----------~ED~shLmtYhSASCV---vvd--e~vt---vD~GKaVAEglL~qf 259 (536)
T COG2024 199 EILKREDPPLKLFSIDRCFRREQ-----------REDASHLMTYHSASCV---VVD--EDVT---VDDGKAVAEGLLRQF 259 (536)
T ss_pred HHHhccCCCceeeehhHHhhhhh-----------hcchhhhhhhccceEE---EEc--Cccc---ccccHHHHHHHHHHh
Confidence 45577899999999988888873 5577778888877655 222 1111 112234678888888
Q ss_pred CCc-eEEeecCCCCCCccccc----ceeeeeeecCCC--------ceeeeeecCcchhhhHHH
Q psy10095 477 NMK-YRICKAPADVLHTSESH----RLEYQVYSYSLN--------SWVTCMDLNAKVYIQIVF 526 (680)
Q Consensus 477 ~Lp-yRVv~m~tgdLg~~a~k----kyDIEvW~P~~~--------~Y~EisS~Sn~~~~q~~~ 526 (680)
|.. ||.. |-.- -|.|- .-.+=||-|-.. .|.||...- .|.++-|
T Consensus 260 GFe~F~Fr--pDEK--~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFG--lYSP~AL 316 (536)
T COG2024 260 GFEKFRFR--PDEK--KSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFG--LYSPIAL 316 (536)
T ss_pred Cccceeec--cccc--cccccCCCccceEEEecccccccccccCCCcEEEEeec--ccChHHH
Confidence 863 3321 1111 11110 112334556665 799987654 4445444
No 182
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=36.45 E-value=23 Score=23.44 Aligned_cols=21 Identities=29% Similarity=0.706 Sum_probs=15.7
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|-|-.|+ |..+...|..|.+.
T Consensus 1 y~C~~C~-y~t~~~~l~~H~~~ 21 (24)
T PF13909_consen 1 YKCPHCS-YSTSKSNLKRHLKR 21 (24)
T ss_dssp EE-SSSS--EESHHHHHHHHHH
T ss_pred CCCCCCC-CcCCHHHHHHHHHh
Confidence 5699999 66669999999865
No 183
>KOG4603|consensus
Probab=36.27 E-value=3.6e+02 Score=27.47 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDY 249 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~l 249 (680)
++..|+.+...+..++..|+..-..+..+|+.+..+-. .+++.++..+|+++.+...+.+..+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt------~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT------TEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445554422211 3445555556666655555555444
No 184
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.48 E-value=1.8e+02 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 230 LERKQLKAEIKKFDSFMLDYQRN 252 (680)
Q Consensus 230 ~~~k~Lk~elk~Le~~l~~le~~ 252 (680)
++.++++++|++.+.++..+.++
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 185
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.43 E-value=2.9e+02 Score=26.57 Aligned_cols=24 Identities=4% Similarity=0.208 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 230 LERKQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 230 ~~~k~Lk~elk~Le~~l~~le~~l 253 (680)
....+++.++..+...+..++.++
T Consensus 96 ~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 96 EDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 186
>KOG0250|consensus
Probab=35.19 E-value=2.2e+02 Score=36.21 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 185 MREKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 185 l~~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
+..+++.....+++++.....+-+.|+.+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~ 384 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADL 384 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544
No 187
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.14 E-value=4.8e+02 Score=26.69 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
+..+..+-+.+..-+..++.+..++.+.++..
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555443
No 188
>KOG2298|consensus
Probab=35.12 E-value=7.3 Score=44.64 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=53.6
Q ss_pred ceeeccchhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCChhH-
Q psy10095 379 NHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHEN- 457 (680)
Q Consensus 379 l~LigTaeevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~pe~- 457 (680)
.||=|-+.--.++|+-+=--++...||.-.+.+|..||.|. +.-.||+||..|+..|+=.++ +|++
T Consensus 183 gyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEI------------SpRsGLlRvrEF~maEIEHFv-dP~~K 249 (599)
T KOG2298|consen 183 GYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEI------------SPRSGLLRVREFTMAEIEHFV-DPLLK 249 (599)
T ss_pred cccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhcc------------CcccCceeEEEeehHHhhccC-CCCCC
Confidence 46655333245666655556678899999999999999984 466799999999999998888 6654
Q ss_pred HHHHHHHH
Q psy10095 458 LCKEFQNI 465 (680)
Q Consensus 458 S~~~~eem 465 (680)
|-.-|.+.
T Consensus 250 ~h~kF~~V 257 (599)
T KOG2298|consen 250 SHPKFSLV 257 (599)
T ss_pred CChhhhhh
Confidence 33344443
No 189
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=34.83 E-value=6.7e+02 Score=28.26 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=46.8
Q ss_pred hhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCChhhHHHHHHHHHHHH
Q psy10095 159 VLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLE--QYLLVNKSKLEPSQLEKKYLERKQLK 236 (680)
Q Consensus 159 i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i--~~~k~~~~~~e~~e~e~l~~~~k~Lk 236 (680)
+..-...+.+.+..-++--|.+...++..++..+...++.++...+...+.. ..+.. +.. +++ ....+.
T Consensus 11 ~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~--~e~-D~~------~~~~~~ 81 (359)
T PRK00591 11 LEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLE--EES-DPE------MREMAK 81 (359)
T ss_pred HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccC-CHH------HHHHHH
Confidence 3334445555554444434566666666666666666655555443332221 12211 111 111 123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy10095 237 AEIKKFDSFMLDYQRNVIIKVLKLPNYLDN 266 (680)
Q Consensus 237 ~elk~Le~~l~~le~~l~~~~l~LPN~~h~ 266 (680)
+++..|+..+.+++.++. .+.+|+-+.+
T Consensus 82 ~e~~~l~~~l~~~e~~l~--~~ll~~~~~D 109 (359)
T PRK00591 82 EELKELEERLEELEEELK--ILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcCCCCCc
Confidence 566666666666665542 2355655443
No 190
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=34.55 E-value=13 Score=28.73 Aligned_cols=9 Identities=33% Similarity=1.493 Sum_probs=7.2
Q ss_pred eeecccccc
Q psy10095 56 QFYCLHCAR 64 (680)
Q Consensus 56 q~yC~~C~r 64 (680)
+||||.|.+
T Consensus 1 MyYCi~Cs~ 9 (41)
T PF13119_consen 1 MYYCINCSE 9 (41)
T ss_pred CEEEEEhHH
Confidence 589999975
No 191
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.29 E-value=3.6e+02 Score=29.51 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
+++..+-.+-.++..++.+|+.++.++.+++..+
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666777777777777666655
No 192
>KOG2384|consensus
Probab=33.93 E-value=21 Score=36.79 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=46.5
Q ss_pred CCCCCCCCCceeecccccccccChHHHHHhhccchhhhhhhhcccC--------------------CCCHHHHHHhcCCC
Q psy10095 46 EIDFDKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVE--------------------PYTVEESERAAGYG 105 (680)
Q Consensus 46 ~~d~dlpG~gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l~~~--------------------pyt~~eae~aag~g 105 (680)
..+.-.|+-.-|||--|++||.+ +.-..|++|-.|-=-++.+-.. -|+++ +|+|
T Consensus 74 ~p~nss~~e~lfyCE~Cd~~ip~-~~~snH~tSttHllsl~~~pa~k~~p~~i~pks~GyrLl~~~GW~pe-----~GLG 147 (223)
T KOG2384|consen 74 HPMNSSRDEALFYCEVCDIYIPN-SKKSNHFTSTTHLLSLQHIPANKFQPHLIKPKSLGYRLLSQYGWSPE-----AGLG 147 (223)
T ss_pred CcccCCCCCccchhhhhhhhccC-CCCccchhhHHHHhhhccCCCCCCCCCcCCCCCchHHHHHhcCCCcc-----cCCC
Confidence 45566788899999999999985 3456788888887666665422 23444 7788
Q ss_pred CCCCCcccccccc
Q psy10095 106 SYQTPKIRKLQTQ 118 (680)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (680)
.-+..+...|.|.
T Consensus 148 p~~~Grr~PvrTv 160 (223)
T KOG2384|consen 148 PENQGRRAPVRTV 160 (223)
T ss_pred ccccCcccchhHH
Confidence 7666666666554
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=33.74 E-value=3.9e+02 Score=25.31 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 179 EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQR 251 (680)
Q Consensus 179 ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~ 251 (680)
+..|..+-.++..++.++..|+.........+.... .....+...|.++|.+++..+.++..
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e-----------~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESE-----------ASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544444443333221 12233455566666666666666644
No 194
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=33.65 E-value=5.3e+02 Score=27.98 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10095 188 KYKEFVGVEKITTELEHKLVDLEQYLLV 215 (680)
Q Consensus 188 ~~r~l~~~~~~L~~~rn~lsk~i~~~k~ 215 (680)
..|.....+...|..|..|.++|..++.
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kLk~ 159 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKLKY 159 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHh
Confidence 3445555666677888999999998764
No 195
>KOG3052|consensus
Probab=33.43 E-value=23 Score=37.65 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=29.3
Q ss_pred CCCCChHHHHH-hhcCCcccCcccccccccchhhhcccCCCCCCCCC
Q psy10095 635 RKPYTVEESER-AAGYGSYQTPKIRKLQTQSLDKTAEYVPPQYPMEE 680 (680)
Q Consensus 635 ~~pyt~~~ae~-a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (680)
+-.||.+||.+ |+.+....+|-...---+-+-....|+|+.||-||
T Consensus 122 gv~~Te~EaKa~A~eiev~Dgpdd~G~~~~RPGkLsD~~P~PYpNee 168 (311)
T KOG3052|consen 122 GVCYTEEEAKAMAAEIEVVDGPDDEGEMFTRPGKLSDYFPSPYPNEE 168 (311)
T ss_pred hhhccHHHHHHhhhheeeccCCCCCCCcccCCccccccCCCCCCCHH
Confidence 88899999865 44445444443333233334556789999999764
No 196
>PRK09335 30S ribosomal protein S26e; Provisional
Probab=33.40 E-value=17 Score=33.27 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.5
Q ss_pred Cceeeccccccccc
Q psy10095 54 EAQFYCLHCARHFI 67 (680)
Q Consensus 54 ~gq~yC~~C~r~F~ 67 (680)
.-++||+.||.|+-
T Consensus 65 ~k~~YCvSCAiH~~ 78 (95)
T PRK09335 65 VTKCYCVNCAVHLG 78 (95)
T ss_pred eeeEEechhhhhcc
Confidence 45799999998864
No 197
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.32 E-value=4.6e+02 Score=25.45 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 182 FTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVI 254 (680)
Q Consensus 182 l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~ 254 (680)
...+..+...|..+...|..+-.++...+..++.+-. +.++.......|...|..|+.++...+..+.
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-----e~~~~~~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-----ESEKRKSNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555444432211 1112222222444555555555555554443
No 198
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.29 E-value=3.7e+02 Score=30.93 Aligned_cols=33 Identities=6% Similarity=-0.152 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQY 212 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~ 212 (680)
..|-..+++..++..++..++.+-+.+..++.+
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666554
No 199
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.20 E-value=3.2e+02 Score=31.51 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 186 REKYKEFVGVEKITTELEHKLVDLEQYLLVNKS---KLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 186 ~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~---~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
.+.++++..+++.++.+.+.+..++..+..... .....+.+.++++...+..+...++.++..+++++..+
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665555543211000 00011233444444455555555555555555554443
No 200
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=32.95 E-value=1.1e+02 Score=34.62 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=82.5
Q ss_pred EeCchHHHHHHHHHHHHHHHHhhCCcEeeccCcccchHHHHhh-cCCCCCCCCceEeecCCCccccccccCCCceeeccc
Q psy10095 307 YLGNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGY-GDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSA 385 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g~-G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTa 385 (680)
|..+....+.+--+ +.+.+. +.||..|.+|.|=.-+.+.-. |. --...+|++.++ .+..++|=|--
T Consensus 13 Lp~e~~~~~~i~~~-l~~~f~-~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~---------~g~~l~LRpD~ 79 (390)
T COG3705 13 LPLEARRKEEIRDQ-LLALFR-AWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDE---------TGGRLGLRPDF 79 (390)
T ss_pred chhHHhhHHHHHHH-HHHHHH-HhCCccccccccchhhhhhhccch--hhhhhheEEecC---------CCCeEEecccc
Confidence 44455555444333 444454 469999999999888877655 31 112346777741 13447776633
Q ss_pred hhhhhhhhhcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhhccce--EEEEEecCChhHHHHHHH
Q psy10095 386 HMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREK--VNLFVGTNNHENLCKEFQ 463 (680)
Q Consensus 386 eevpl~~~~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~K--VE~f~~~~~pe~S~~~~e 463 (680)
. +|+|=.|.-.- . + .|.||+=.|..||. ..|.+|+.. .|.. ||+++...-..+ -
T Consensus 80 T-~pVaR~~~~~~-~-~-~P~Rl~Y~G~Vfr~--------~~~~~g~~~-------Ef~QaGiEllG~~~~~AD-----a 135 (390)
T COG3705 80 T-IPVARIHATLL-A-G-TPLRLSYAGKVFRA--------REGRHGRRA-------EFLQAGIELLGDDSAAAD-----A 135 (390)
T ss_pred c-HHHHHHHHHhc-C-C-CCceeeecchhhhc--------chhccCccc-------chhhhhhHHhCCCcchhh-----H
Confidence 2 56776654432 2 2 89999866666666 245555543 4443 688886521222 2
Q ss_pred HHHHHHHHHHHHcCCc
Q psy10095 464 NIQSLLKSVMDKLNMK 479 (680)
Q Consensus 464 eml~~~e~il~~L~Lp 479 (680)
|++..+...++.+||+
T Consensus 136 Evi~la~~~L~~~gl~ 151 (390)
T COG3705 136 EVIALALAALKALGLA 151 (390)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 7888888899999864
No 201
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.88 E-value=2.6e+02 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEH 204 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn 204 (680)
+.+..+.++...+..+++.++....
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 202
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=32.73 E-value=5.3e+02 Score=26.01 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10095 231 ERKQLKAEIKKFDSFMLDYQ 250 (680)
Q Consensus 231 ~~k~Lk~elk~Le~~l~~le 250 (680)
++.++.+.|..|++.+.+++
T Consensus 126 e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 126 EMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666543
No 203
>KOG0995|consensus
Probab=32.16 E-value=9.1e+02 Score=28.89 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=32.5
Q ss_pred hHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 156 VKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQY 212 (680)
Q Consensus 156 ~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~ 212 (680)
++.|..+.+.++..|++-++ ...+|..+..++.++...++.+..++..+++.+..
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~i--S~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGI--SGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666666543 34556666666666666666666666666665554
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.93 E-value=3.1e+02 Score=30.00 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10095 230 LERKQLKAEIKKFDSFMLDYQR 251 (680)
Q Consensus 230 ~~~k~Lk~elk~Le~~l~~le~ 251 (680)
.+...++.+|.+++++..++..
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 205
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.83 E-value=3.1e+02 Score=27.59 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 228 KYLERKQLKAEIKKFDSFMLDYQRN 252 (680)
Q Consensus 228 l~~~~k~Lk~elk~Le~~l~~le~~ 252 (680)
+..+...|.-+...+++.+..++.+
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555444
No 206
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.58 E-value=1.7e+02 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 228 KYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 228 l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
+-.+..+|++++.+|+.....++.++..+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 207
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.46 E-value=5.3e+02 Score=27.42 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 180 d~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
.++..+-..+..+..+++.|+.....+.+.|..+
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3344444555555555555666556666655544
No 208
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.35 E-value=6.9e+02 Score=27.10 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=8.1
Q ss_pred CCCHHHHHHhcCCCCC
Q psy10095 92 PYTVEESERAAGYGSY 107 (680)
Q Consensus 92 pyt~~eae~aag~g~~ 107 (680)
-+|..+-+...|+-.+
T Consensus 57 sftl~~~~~~~~~~~~ 72 (269)
T PF05278_consen 57 SFTLSEIECMKGLKTN 72 (269)
T ss_pred cccHHHHHHHhccccc
Confidence 3555555555555443
No 209
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.92 E-value=4.4e+02 Score=26.94 Aligned_cols=39 Identities=5% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCCC-----hhHHHHHHHHHHHHHHHHHHHHH
Q psy10095 163 EDLIVNQLKQRRIDIS-----EFDFTQMREKYKEFVGVEKITTE 201 (680)
Q Consensus 163 ~e~v~~~l~~R~~~~d-----ld~l~~l~~~~r~l~~~~~~L~~ 201 (680)
....-..|+.=|+++- +++++.+-+.+.++....+.+..
T Consensus 74 ~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~ 117 (190)
T PF05266_consen 74 LMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEK 117 (190)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344455666677763 46666666555555544444433
No 210
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=30.90 E-value=4e+02 Score=26.58 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=66.5
Q ss_pred hCCcEeeccCcccchHHHHhhcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhhhcccccCCCCCCceE
Q psy10095 329 KHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKY 408 (680)
Q Consensus 329 ~~Gf~~i~~P~~Vr~~v~~g~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~~~~e~l~~~~LPlKy 408 (680)
..||.++.+..|+.....+.-|+. ..+...+.+.-++- ...-+..|+|+ .. -++-.| +.-...|+++
T Consensus 15 ~~G~~E~~tys~~~~~~~~~~~~~---~~~~i~l~NPis~e----~~~lR~sLlp~--LL--~~~~~N--~~~~~~~~~l 81 (198)
T cd00769 15 GLGFQEVITYSLTSPEEAELFDGG---LDEAVELSNPLSEE----YSVLRTSLLPG--LL--DALARN--LNRKNKPLRL 81 (198)
T ss_pred HCCCceeecccCCCHHHHHhccCC---CCCeEEEcCCCchh----HHHHHHHHHHH--HH--HHHHHH--hcCCCCCEeE
Confidence 369999999999999777654321 12335555311100 00012334442 11 122222 2334579999
Q ss_pred eeeCcccCCCccccccccccCCCCCcccchhhhccceEEEEEecCC-hhHHH------HHHHHHHHHHHHHHHHcCCc
Q psy10095 409 VTSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNN-HENLC------KEFQNIQSLLKSVMDKLNMK 479 (680)
Q Consensus 409 ~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~~~~~-pe~S~------~~~eeml~~~e~il~~L~Lp 479 (680)
+=+|++|.+. . . ...|..++= +++|+. .+.+| .-|.++-...+.++..||+.
T Consensus 82 FEiG~vf~~~----------~---~-----~~~e~~~l~-~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~ 140 (198)
T cd00769 82 FEIGRVFLKD----------E---D-----GPEEEEHLA-ALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGII 140 (198)
T ss_pred EEeEeEEecC----------C---C-----CCcchheEE-EEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCe
Confidence 9999999773 1 0 112444443 334532 22222 24889999999999999974
No 211
>KOG1936|consensus
Probab=30.77 E-value=2e+02 Score=33.16 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhCCcEeeccCcccchHHHHh-hcCCCCCCCCceEeecCCCccccccccCCCceeeccchhhhhhhh
Q psy10095 315 EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEG-YGDHYLSPHDNMVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAY 393 (680)
Q Consensus 315 E~ALi~y~ld~~~~~~Gf~~i~~P~~Vr~~v~~g-~G~~p~~~~~~~~i~~~~~~~~~~~~~~~~l~LigTaeevpl~~~ 393 (680)
...+.+-....| ++||+..|-+|.|=-.+++.| .| .+..-+|-+.+.+. ..+.|=.--. +|||-|
T Consensus 77 Re~if~~i~~vF-krhGa~~iDTPVFElkeiL~gKYG---EdskLiYdlkDQGG---------El~SLRYDLT-VPfARy 142 (518)
T KOG1936|consen 77 REKIFSTIKEVF-KRHGAETIDTPVFELKEILTGKYG---EDSKLIYDLKDQGG---------ELCSLRYDLT-VPFARY 142 (518)
T ss_pred HHHHHHHHHHHH-HHcCCeeccccchhHHHHHhhhcc---cccceeEehhhcCC---------cEEEeecccc-cHHHHH
Confidence 344444444433 679999999999977777654 44 23323444442121 1222322112 788877
Q ss_pred hcccccCCCCCCceEeeeCcccCCCccccccccccCCCCCcccchhhh---ccceEEEEEecCChhHHHHHHHHHHHHHH
Q psy10095 394 HTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLKTSKHSRVENLYNSI---QREKVNLFVGTNNHENLCKEFQNIQSLLK 470 (680)
Q Consensus 394 ~~~e~l~~~~LPlKy~a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvH---QF~KVE~f~~~~~pe~S~~~~eeml~~~e 470 (680)
.+-+ ....+|.+-+| ..||.. .++ =|||=||=| -|+=.-+|--. .|+- |.+.+..
T Consensus 143 lAmN--ki~sikRy~iA--kVyRRd------~P~-----mtrGR~REFYQcDFDIAG~~d~M-~pda------E~lkiv~ 200 (518)
T KOG1936|consen 143 LAMN--KITSIKRYHIA--KVYRRD------QPA-----MTRGRYREFYQCDFDIAGQFDPM-IPDA------ECLKIVV 200 (518)
T ss_pred HHHc--ccccceeeeEE--EEEecc------Cch-----hhchhhhhhhccCccccccCCCC-CchH------HHHHHHH
Confidence 6555 45566766666 556553 222 367767733 34444333322 3444 7899999
Q ss_pred HHHHHcCCc
Q psy10095 471 SVMDKLNMK 479 (680)
Q Consensus 471 ~il~~L~Lp 479 (680)
+||+.||+-
T Consensus 201 e~L~~l~Ig 209 (518)
T KOG1936|consen 201 EILSRLGIG 209 (518)
T ss_pred HHHhhcCcc
Confidence 999999985
No 212
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.75 E-value=3.9e+02 Score=27.61 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 228 KYLERKQLKAEIKKFDSFMLDYQRN 252 (680)
Q Consensus 228 l~~~~k~Lk~elk~Le~~l~~le~~ 252 (680)
|.++.+++..+.+.|.+.+..++++
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 213
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.66 E-value=1.3e+02 Score=29.67 Aligned_cols=24 Identities=0% Similarity=-0.115 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 184 QMREKYKEFVGVEKITTELEHKLV 207 (680)
Q Consensus 184 ~l~~~~r~l~~~~~~L~~~rn~ls 207 (680)
....+.++++.|+.+++++.+.+|
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS 60 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAIS 60 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred cccHHHHHHHHHHHHHHHHHHcCC
Confidence 445666777777777777766554
No 214
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.13 E-value=4.5e+02 Score=27.70 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDY 249 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~l 249 (680)
+.-.|.+++.....++.++.+..|.+...|+++.. +..+.+..+..+-+++..|+.+++++
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~--------er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAES--------ERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777788888888877632 23334444444555555555555554
No 215
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.09 E-value=5.1e+02 Score=24.95 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10095 196 EKITTELEHKLVDLEQYL 213 (680)
Q Consensus 196 ~~~L~~~rn~lsk~i~~~ 213 (680)
-+.|...|..|+..|..+
T Consensus 56 s~~l~~tKkhLsqRId~v 73 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRV 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555556666666554
No 216
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.93 E-value=3.1e+02 Score=31.93 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10095 233 KQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 233 k~Lk~elk~Le~~l~~le~~l 253 (680)
..+.++|++++.++..|++++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555
No 217
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.86 E-value=3.9e+02 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 224 QLEKKYLERKQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 224 e~e~l~~~~k~Lk~elk~Le~~l~~le~~l 253 (680)
++.+++++.+.+..++......+.+++.++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444334444443333
No 218
>KOG2264|consensus
Probab=29.79 E-value=3.6e+02 Score=32.24 Aligned_cols=55 Identities=11% Similarity=-0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 195 VEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKV 257 (680)
Q Consensus 195 ~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~ 257 (680)
++.+|+.+|.++...|.++-. .+|+++.+.-+-+.+|..|+..+.+.+..+.++.
T Consensus 94 EL~ele~krqel~seI~~~n~--------kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINT--------KIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555554411 1233444444444455555555555555544443
No 219
>KOG0250|consensus
Probab=29.79 E-value=1.3e+03 Score=29.68 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCCCCcc-cccceeeeeeecCCC-c--eeeeeecCcc--hhhhHHHH--HHHHHHHHhhhccccccccCCCCcccchHHH
Q psy10095 487 ADVLHTS-ESHRLEYQVYSYSLN-S--WVTCMDLNAK--VYIQIVFF--IQEMSWMKKLAEKIIPNIDENIGMEYMSFLK 558 (680)
Q Consensus 487 tgdLg~~-a~kkyDIEvW~P~~~-~--Y~EisS~Sn~--~~~q~~~~--~~e~~~~~k~~~~l~~s~dG~~g~e~~~F~k 558 (680)
+|+|.+. .-+++||+|=+|..+ . -+-+.++|-- +..+.+|- ..+. ...|+.. =-|...|.+
T Consensus 957 sg~l~~~~e~ktl~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~-----me~Pfr~------LDEFDVFMD 1025 (1074)
T KOG0250|consen 957 SGKLEFDHEEKTLSISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEV-----MECPFRA------LDEFDVFMD 1025 (1074)
T ss_pred CcceeecccccccchhhccCCCCcccccccccccCcccchHHHHHHHHHHhHh-----hcCchhh------hhHHHHHHH
Confidence 4555554 467789999555544 4 4444445522 32233332 2111 1245532 116777888
Q ss_pred HHHHHHHhh
Q psy10095 559 RTADRLCMK 567 (680)
Q Consensus 559 rLA~~Ls~K 567 (680)
+++.++++.
T Consensus 1026 ~vNRKi~~d 1034 (1074)
T KOG0250|consen 1026 MVNRKISMD 1034 (1074)
T ss_pred HHHHHHHHH
Confidence 888888764
No 220
>PHA00732 hypothetical protein
Probab=29.70 E-value=32 Score=30.24 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.0
Q ss_pred eecccccccccChHHHHHhhcc
Q psy10095 57 FYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 57 ~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
|-|..|++-|.+..+|..|.+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 5699999999999999999873
No 221
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.56 E-value=5.1e+02 Score=26.80 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRN 252 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~ 252 (680)
.++|.++...+++++..|+.++..++++
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666554
No 222
>PRK11415 hypothetical protein; Provisional
Probab=29.16 E-value=3.3e+02 Score=23.61 Aligned_cols=40 Identities=18% Similarity=0.035 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHH
Q psy10095 202 LEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKK 241 (680)
Q Consensus 202 ~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~ 241 (680)
+-+.+.++|..+-.......+.+.+.++.+.-.||++|..
T Consensus 25 ~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~ 64 (74)
T PRK11415 25 KHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLK 64 (74)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 3344444444442222211223455566555566665544
No 223
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=28.94 E-value=2.3e+02 Score=27.57 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy10095 187 EKYKEFVGVEKITTE-LEHKLVDLEQYLLVNKS 218 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~-~rn~lsk~i~~~k~~~~ 218 (680)
+-+.+|+.+++.|+. +|-++.+.++.+...++
T Consensus 10 ~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gd 42 (157)
T PRK00226 10 EGYEKLEEELEELKTVERPEIIEAIAEAREHGD 42 (157)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCC
Confidence 345667777777776 67788888877654443
No 224
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.80 E-value=4.7e+02 Score=30.64 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=31.0
Q ss_pred chHHhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQ 211 (680)
Q Consensus 155 D~k~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~ 211 (680)
.++.+++|.|.++..+++.++ ++.++..+..++-++-.+++.+.-+..++.+.++
T Consensus 345 ei~~L~~~~d~L~~q~~kq~I--s~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 345 EIKALQSNIDELHKQLRKQGI--STEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred HHHHHHhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 455566667777776666553 3455655555555555555555444444444444
No 225
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=28.78 E-value=2.9e+02 Score=21.81 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy10095 223 SQLEKKYLERKQLKAEIKKFD 243 (680)
Q Consensus 223 ~e~e~l~~~~k~Lk~elk~Le 243 (680)
.+.+.|+.+.=.||++|..+.
T Consensus 27 ~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 27 EELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665543
No 226
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=28.19 E-value=27 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=22.1
Q ss_pred ecccccccccChHHHHHhhccchhhhhh
Q psy10095 58 YCLHCARHFIDEHALKEHFRTKVHKRRL 85 (680)
Q Consensus 58 yC~~C~r~F~~~~~l~~H~k~K~HKrr~ 85 (680)
||--|--.|. .|..|..|+.|++=.
T Consensus 7 YCE~Cr~kfd---~l~~Hi~s~~Hr~FA 31 (49)
T smart00586 7 YCENCREKYD---DLETHLLSEKHRRFA 31 (49)
T ss_pred ccccHhHHHh---hHHHHhccHHHHHHH
Confidence 9999999997 688999999998743
No 227
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.10 E-value=4.5e+02 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 229 YLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 229 ~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
..+...+..+++.++.++..+++++...
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544433
No 228
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=27.90 E-value=25 Score=26.48 Aligned_cols=12 Identities=25% Similarity=0.947 Sum_probs=9.9
Q ss_pred CCCceeeccccc
Q psy10095 52 PGEAQFYCLHCA 63 (680)
Q Consensus 52 pG~gq~yC~~C~ 63 (680)
+-.|.|||.+|+
T Consensus 21 ~~dG~~yC~~cG 32 (36)
T PF11781_consen 21 SDDGFYYCDRCG 32 (36)
T ss_pred ccCCEEEhhhCc
Confidence 345999999997
No 229
>KOG2391|consensus
Probab=27.73 E-value=5.4e+02 Score=28.86 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNST 268 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~~V 268 (680)
.++|.+....|+.++..|.+..+-+..+..+.+-..-|+...++
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~ 291 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDI 291 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCc
Confidence 34555666677777777777777777777788888888555544
No 230
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=27.68 E-value=2.2e+02 Score=31.48 Aligned_cols=30 Identities=3% Similarity=0.031 Sum_probs=18.3
Q ss_pred HHHHhhhcCCcccchhhhhhchhHHHHHHH
Q psy10095 562 DRLCMKWNRSYAQVLGWLRTKCQISIIRTI 591 (680)
Q Consensus 562 ~~Ls~Kw~~~ys~~i~wir~~~sfailr~~ 591 (680)
..++.+-.-.|+..-.|+-++-.|+-||..
T Consensus 251 ~~~~~~~~~~~~~~~~~v~n~~~~~~L~~l 280 (378)
T TIGR01554 251 LFLNVTLDPRKNANAVFVTNQSGLAALDKL 280 (378)
T ss_pred HHHhCCcchhhccCcEEEEchHHHHHHHHh
Confidence 334443333333344799999999888754
No 231
>KOG1656|consensus
Probab=27.50 E-value=3.5e+02 Score=28.25 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=16.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 176 DISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQY 212 (680)
Q Consensus 176 ~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~ 212 (680)
..|+|+|..+-++.++- +..-++||..|..
T Consensus 120 ~mDiDkVdd~MdeI~eQ-------qe~a~eIseAiS~ 149 (221)
T KOG1656|consen 120 NMDIDKVDDLMDEIAEQ-------QEVAEEISEAISA 149 (221)
T ss_pred ccChhHHHHHHHHHHHH-------HHHHHHHHHHHhC
Confidence 45677776666655443 2334555665554
No 232
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.18 E-value=2.9e+02 Score=33.02 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 230 LERKQLKAEIKKFDSFMLDYQRNVIIKV 257 (680)
Q Consensus 230 ~~~k~Lk~elk~Le~~l~~le~~l~~~~ 257 (680)
++..+++.+++.++.++.+.++++...+
T Consensus 262 ~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 262 EEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666665554
No 233
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.88 E-value=2.5e+02 Score=27.12 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy10095 177 ISEFDFTQMREKYKEFVG-VEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 177 ~dld~l~~l~~~~r~l~~-~~~~L~~~rn~lsk~i~~~ 213 (680)
+|...+..+-..|.+... -.+.+-.++|.|++.|++.
T Consensus 24 lds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKev 61 (131)
T PF10158_consen 24 LDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEV 61 (131)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444333 4667778888898888875
No 234
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.83 E-value=6.2e+02 Score=24.93 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEHKLVDLEQ 211 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~ 211 (680)
++.+..+....+..++++++..-..+...+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 235
>PTZ00172 40S ribosomal protein S26; Provisional
Probab=26.82 E-value=25 Score=32.78 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=11.4
Q ss_pred Cceeeccccccccc
Q psy10095 54 EAQFYCLHCARHFI 67 (680)
Q Consensus 54 ~gq~yC~~C~r~F~ 67 (680)
.-++|||.||-|+-
T Consensus 69 ~k~~YCVSCAIH~~ 82 (108)
T PTZ00172 69 MKQQYCVSCAIHSR 82 (108)
T ss_pred eeeEEeeehhhcCC
Confidence 45789999998864
No 236
>PHA00733 hypothetical protein
Probab=26.25 E-value=37 Score=32.34 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=13.1
Q ss_pred eeecccccccccChHHHHHhhc
Q psy10095 56 QFYCLHCARHFIDEHALKEHFR 77 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~k 77 (680)
.|-|..|++-|.+..+|..|.+
T Consensus 73 Py~C~~Cgk~Fss~s~L~~H~r 94 (128)
T PHA00733 73 PYVCPLCLMPFSSSVSLKQHIR 94 (128)
T ss_pred CccCCCCCCcCCCHHHHHHHHh
Confidence 3556666666666666666654
No 237
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=30 Score=38.78 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=21.1
Q ss_pred ccccccCCCCCCCccccccCCccccccCCCCccceeccCCCC
Q psy10095 597 GTRKRARGLGCEDGAELNMKDSLDANLVQMSTNYCLVLRKPY 638 (680)
Q Consensus 597 g~r~~~R~v~~~D~~~~~l~~~~d~~~pg~g~~yc~~c~~py 638 (680)
.|-.|||.+|++- +.- .---|--||.||+.|-
T Consensus 320 stGArWRn~nvPG-E~e---------~rnKGVayCPHCDGPL 351 (520)
T COG3634 320 ATGARWRNMNVPG-EDE---------YRNKGVAYCPHCDGPL 351 (520)
T ss_pred ecCcchhcCCCCc-hHH---------HhhCCeeeCCCCCCcc
Confidence 3556899888873 211 1235889999996664
No 238
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.73 E-value=1.3e+02 Score=26.59 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 227 KKYLERKQLKAEIKKFDSFMLDYQRN 252 (680)
Q Consensus 227 ~l~~~~k~Lk~elk~Le~~l~~le~~ 252 (680)
++.++-.+|+.+|+.||+++.+...+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555667888888888777766554
No 239
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.36 E-value=4e+02 Score=29.12 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy10095 461 EFQNIQSLLKSVM 473 (680)
Q Consensus 461 ~~eeml~~~e~il 473 (680)
+|+-|.......|
T Consensus 408 ~l~~~~~~~~~~~ 420 (423)
T TIGR01843 408 LLKPITDSVQEAL 420 (423)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444433
No 240
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.14 E-value=5e+02 Score=25.59 Aligned_cols=71 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 179 EFDFTQMREKYKE-FVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYL---ERKQLKAEIKKFDSFMLDYQRNVI 254 (680)
Q Consensus 179 ld~l~~l~~~~r~-l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~---~~k~Lk~elk~Le~~l~~le~~l~ 254 (680)
++.|..++..--. .+.+.+.+..+++.+..++... ..++..|+. -...|+.+|..|+....+..++..
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~--------d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEA--------DKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy10095 255 IKV 257 (680)
Q Consensus 255 ~~~ 257 (680)
..+
T Consensus 76 ~~l 78 (155)
T PF06810_consen 76 AKL 78 (155)
T ss_pred HHH
No 241
>PHA00733 hypothetical protein
Probab=24.87 E-value=44 Score=31.82 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.6
Q ss_pred eeecccccccccChHHHHHhhccc
Q psy10095 56 QFYCLHCARHFIDEHALKEHFRTK 79 (680)
Q Consensus 56 q~yC~~C~r~F~~~~~l~~H~k~K 79 (680)
.|-|-.|++.|....+|..|...|
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~~~ 122 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVCKK 122 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHHHh
Confidence 479999999999999999998755
No 242
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=4.6e+02 Score=23.00 Aligned_cols=44 Identities=18% Similarity=0.082 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHH
Q psy10095 198 ITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKK 241 (680)
Q Consensus 198 ~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~ 241 (680)
.|-.+-|++-+.|..+-.+-....+.+.+.++.+.=+||++|..
T Consensus 21 rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi~~ 64 (72)
T COG2841 21 RLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEIAS 64 (72)
T ss_pred HHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Confidence 34455677777777664333333334455566666666666543
No 243
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.78 E-value=5.4e+02 Score=23.53 Aligned_cols=27 Identities=4% Similarity=-0.037 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 187 EKYKEFVGVEKITTELEHKLVDLEQYL 213 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~~rn~lsk~i~~~ 213 (680)
++.+.+..++..|....++....+..+
T Consensus 17 ~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 17 QQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554444444443
No 244
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.70 E-value=7.5e+02 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.330 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEe
Q psy10095 459 CKEFQNIQSLLKSVMDKLNMKYRIC 483 (680)
Q Consensus 459 ~~~~eeml~~~e~il~~L~LpyRVv 483 (680)
..++..++....--||+=-| ||.+
T Consensus 216 f~~~~~~vq~lQ~~YQ~~~L-y~l~ 239 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQRGCL-YRLR 239 (330)
T ss_pred HHHHHHHHHHHHHHHHHhHH-HHHH
Confidence 34666666666666665333 4444
No 245
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=24.56 E-value=1.4e+02 Score=24.44 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=23.9
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecCCCC
Q psy10095 444 EKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADV 489 (680)
Q Consensus 444 ~KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~tgd 489 (680)
+||.+|... ... .-..+.++|+++|++|..+++...+
T Consensus 1 ~~v~lys~~-~Cp--------~C~~ak~~L~~~~i~~~~~~v~~~~ 37 (72)
T cd03029 1 ESVSLFTKP-GCP--------FCARAKAALQENGISYEEIPLGKDI 37 (72)
T ss_pred CeEEEEECC-CCH--------HHHHHHHHHHHcCCCcEEEECCCCh
Confidence 467778733 222 1234467777899999999886543
No 246
>smart00150 SPEC Spectrin repeats.
Probab=24.47 E-value=4.2e+02 Score=22.08 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10095 167 VNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLV 215 (680)
Q Consensus 167 ~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~ 215 (680)
...+..-.+..|++.+..+-++.+.++.++......-+.+...-..+..
T Consensus 18 e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 18 EALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444578888888888888888887777666666665444443
No 247
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.45 E-value=4.7e+02 Score=22.70 Aligned_cols=67 Identities=16% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10095 186 REKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKL 260 (680)
Q Consensus 186 ~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~L 260 (680)
.+.+.++..++..+-..-..+...+..++. +...+..+...|+.+...|.......++.+..++-+|
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke--------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKE--------KNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 248
>KOG4674|consensus
Probab=24.41 E-value=6e+02 Score=34.44 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 223 SQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKV 257 (680)
Q Consensus 223 ~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~ 257 (680)
++.+++..++..|++++...+..+.++...+...-
T Consensus 1307 ~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1307 NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665555555554443
No 249
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.38 E-value=1.5e+02 Score=30.03 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 231 ERKQLKAEIKKFDSFMLDYQRNV 253 (680)
Q Consensus 231 ~~k~Lk~elk~Le~~l~~le~~l 253 (680)
+.+...+++..|+..-..+.+++
T Consensus 164 ~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 164 EEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555665555555544443
No 250
>KOG1074|consensus
Probab=24.25 E-value=40 Score=41.23 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=25.7
Q ss_pred CCCCCceeecccccccccChHHHHHhhccch
Q psy10095 50 DKPGEAQFYCLHCARHFIDEHALKEHFRTKV 80 (680)
Q Consensus 50 dlpG~gq~yC~~C~r~F~~~~~l~~H~k~K~ 80 (680)
+-|=.-.|||--|.|.|-+..+|+.|.||-.
T Consensus 873 ~~pvnn~h~C~vCgk~FsSSsALqiH~rTHt 903 (958)
T KOG1074|consen 873 PGPVNNAHVCNVCGKQFSSSAALEIHMRTHT 903 (958)
T ss_pred CCcccchhhhccchhcccchHHHHHhhhcCC
Confidence 3344455999999999999999999999853
No 251
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.11 E-value=5.2e+02 Score=30.92 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 224 QLEKKYLERKQLKAEIKKFDSFMLDY 249 (680)
Q Consensus 224 e~e~l~~~~k~Lk~elk~Le~~l~~l 249 (680)
+.+++.++..++.+++.+++..+..+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~ 447 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEEL 447 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 252
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.07 E-value=3.4e+02 Score=30.19 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=4.7
Q ss_pred cchHHHHhhc
Q psy10095 341 CKGVIVEGYG 350 (680)
Q Consensus 341 Vr~~v~~g~G 350 (680)
+|+.|+...|
T Consensus 167 iRE~IL~~NG 176 (330)
T PF07851_consen 167 IRESILIVNG 176 (330)
T ss_pred HHHHhhccCC
Confidence 3444444444
No 253
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.84 E-value=4.6e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH
Q psy10095 164 DLIVNQLKQRRIDISEFDFTQMREK 188 (680)
Q Consensus 164 e~v~~~l~~R~~~~dld~l~~l~~~ 188 (680)
+.++.-...|...+.++++..+.+.
T Consensus 43 ~~l~~I~~lr~~G~~L~~I~~~l~~ 67 (118)
T cd04776 43 ARLKLILRGKRLGFSLEEIRELLDL 67 (118)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 4444444445455556666555443
No 254
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.72 E-value=5.3e+02 Score=28.32 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 183 TQMREKYKEFVGVEKITTELEHK 205 (680)
Q Consensus 183 ~~l~~~~r~l~~~~~~L~~~rn~ 205 (680)
..+.+.+..++.++..|++....
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 33445555555555555554433
No 255
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.64 E-value=3.7e+02 Score=30.04 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10095 179 EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNK 217 (680)
Q Consensus 179 ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~ 217 (680)
++.+..+..+-..+..+-+.|+.+.+++.+++..+...|
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K 174 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAK 174 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666777777777777777665443
No 256
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=23.62 E-value=1.1e+03 Score=26.63 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=46.8
Q ss_pred HhhcCHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCChhhHHHHHHHHHHHH
Q psy10095 158 HVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLV-NKSKLEPSQLEKKYLERKQLK 236 (680)
Q Consensus 158 ~i~~n~e~v~~~l~~R~~~~dld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~-~~~~~e~~e~e~l~~~~k~Lk 236 (680)
.+..-...+.+.+..-++--|......+..++..+...++.++.....+. .+..+.. ..+ . +++ + ...+.
T Consensus 11 ~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~-~~~~~~el~~~-~-D~e---~---~~~a~ 81 (360)
T TIGR00019 11 SLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQE-DIKEAKEILEE-S-DPE---M---REMAK 81 (360)
T ss_pred HHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-c-CHH---H---HHHHH
Confidence 33444455555555444434566666666666666666655544433222 2222111 011 1 111 1 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy10095 237 AEIKKFDSFMLDYQRNVIIKVLKLPNYLD 265 (680)
Q Consensus 237 ~elk~Le~~l~~le~~l~~~~l~LPN~~h 265 (680)
+++..++..+.+++.++. .+.+|+-++
T Consensus 82 ~e~~~l~~~~~~~e~~l~--~~ll~~~~~ 108 (360)
T TIGR00019 82 EELEELEEKIEELEEQLK--VLLLPKDPN 108 (360)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhCCCCCC
Confidence 666777777777665543 345665554
No 257
>KOG0933|consensus
Probab=23.60 E-value=4.2e+02 Score=33.73 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDN 266 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~~l~LPN~~h~ 266 (680)
.+.+..+..++..++...+.++..++.++..+-..+||+--.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777888888888888888888888888888887653
No 258
>KOG1074|consensus
Probab=23.60 E-value=32 Score=42.02 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=23.2
Q ss_pred CceeecccccccccChHHHHHhhcc
Q psy10095 54 EAQFYCLHCARHFIDEHALKEHFRT 78 (680)
Q Consensus 54 ~gq~yC~~C~r~F~~~~~l~~H~k~ 78 (680)
.+.|.|..|||-|-++.+|+-|.||
T Consensus 351 ~~khkCr~CakvfgS~SaLqiHlRS 375 (958)
T KOG1074|consen 351 FFKHKCRFCAKVFGSDSALQIHLRS 375 (958)
T ss_pred cccchhhhhHhhcCchhhhhhhhhc
Confidence 5678999999999999999999987
No 259
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.57 E-value=4.6e+02 Score=26.56 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITT 200 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~ 200 (680)
-|..+|++|+.+......|-
T Consensus 85 LL~rvrde~~~~l~~y~~l~ 104 (189)
T PF10211_consen 85 LLLRVRDEYRMTLDAYQTLY 104 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36666777766655544443
No 260
>KOG3993|consensus
Probab=23.48 E-value=37 Score=38.60 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=27.3
Q ss_pred CCCCCCcee----------ecccccccccChHHHHHhhccchhhhh
Q psy10095 49 FDKPGEAQF----------YCLHCARHFIDEHALKEHFRTKVHKRR 84 (680)
Q Consensus 49 ~dlpG~gq~----------yC~~C~r~F~~~~~l~~H~k~K~HKrr 84 (680)
+|-=++.|| .|-+|||.|.--.+|..|+|= ||=|
T Consensus 278 eD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRW--HKPR 321 (500)
T KOG3993|consen 278 EDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRW--HKPR 321 (500)
T ss_pred hhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcc--cCCc
Confidence 455577887 578999999999999999874 6655
No 261
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.39 E-value=4.9e+02 Score=28.46 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH-HcCCceEEe
Q psy10095 460 KEFQNIQSLLKSVMD-KLNMKYRIC 483 (680)
Q Consensus 460 ~~~eeml~~~e~il~-~L~LpyRVv 483 (680)
..+.++...+...-. .+.|||+|-
T Consensus 247 ~~~~q~~~~~~~~~~~~~~lPy~i~ 271 (314)
T PF04111_consen 247 DCLQQLAEFVEKRDPQSFELPYKID 271 (314)
T ss_dssp HHHHHHHHHHHHHHH-----SS-EC
T ss_pred HHHHHHHHHHHhcCCcccccceecc
Confidence 345555555555555 799999984
No 262
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.34 E-value=7.9e+02 Score=24.91 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHH
Q psy10095 187 EKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEI 239 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~el 239 (680)
+++..+..++++|+.+..++.+++..+... +++.+++++.+...+++.+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~----Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSEN----DPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888777755321 1334444444444444433
No 263
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.34 E-value=3.4e+02 Score=27.30 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 233 KQLKAEIKKFDSFMLDYQRNVII 255 (680)
Q Consensus 233 k~Lk~elk~Le~~l~~le~~l~~ 255 (680)
+++++.|+.+++.+..+++.+-.
T Consensus 138 ~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777666543
No 264
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=23.05 E-value=28 Score=29.94 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=0.0
Q ss_pred cccccccccChHHHHHhhccchhhhh
Q psy10095 59 CLHCARHFIDEHALKEHFRTKVHKRR 84 (680)
Q Consensus 59 C~~C~r~F~~~~~l~~H~k~K~HKrr 84 (680)
|..|+..|.+...|..|++ +.|.--
T Consensus 2 C~~C~~~f~~~~~l~~H~~-~~H~~~ 26 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMK-KKHGFD 26 (100)
T ss_dssp --------------------------
T ss_pred ccccccccccccccccccc-cccccc
Confidence 9999999999999999994 555443
No 265
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.71 E-value=6.7e+02 Score=23.85 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=9.0
Q ss_pred cchHHhhcCHHHHHHH
Q psy10095 154 YDVKHVLENEDLIVNQ 169 (680)
Q Consensus 154 LD~k~i~~n~e~v~~~ 169 (680)
=++..+.+|++.+..-
T Consensus 7 ~eL~~Ll~d~~~l~~~ 22 (150)
T PF07200_consen 7 EELQELLSDEEKLDAF 22 (150)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHcCHHHHHHH
Confidence 3556666666666554
No 266
>PLN00186 ribosomal protein S26; Provisional
Probab=22.61 E-value=34 Score=31.98 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=13.3
Q ss_pred CCCCC--Cceeeccccccccc
Q psy10095 49 FDKPG--EAQFYCLHCARHFI 67 (680)
Q Consensus 49 ~dlpG--~gq~yC~~C~r~F~ 67 (680)
.-+|= .-++|||.||=|+-
T Consensus 62 y~lPKly~K~~YCVSCAIH~~ 82 (109)
T PLN00186 62 YTLPKLYAKVQYCISCAIHSR 82 (109)
T ss_pred cccchhhhceEEEEeehhccc
Confidence 34554 34699999998764
No 267
>PRK13694 hypothetical protein; Provisional
Probab=22.50 E-value=5.8e+02 Score=23.02 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 185 MREKYKEFVGVEKITTELEHKLVDLEQYLL 214 (680)
Q Consensus 185 l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k 214 (680)
..++.|++...++.|++++..++..|+...
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikdVy 39 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKDVY 39 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999998753
No 268
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=22.29 E-value=2.9e+02 Score=34.80 Aligned_cols=58 Identities=9% Similarity=-0.050 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy10095 187 EKYKEFVGVEKITTE-LEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDS 244 (680)
Q Consensus 187 ~~~r~l~~~~~~L~~-~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~ 244 (680)
+-|.+++.+++.|.. +|-++++.|+.+...|+-.|-.+...-+++-..+...|.+|++
T Consensus 755 eg~~kL~~EL~~L~~v~Rpei~~~I~~Ar~~GDLsENaEY~aAKe~q~~le~RI~eLe~ 813 (906)
T PRK14720 755 RALNKKKKELEHLKDVEMPENSKDIGEAQELGDLRENAEYKAAKEKQQQLQAALKRLEA 813 (906)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 557888889999975 7999999999987666533222333334444444444444443
No 269
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=37 Score=40.04 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=45.2
Q ss_pred eeCcccCCCccccccccccCCCCCcccchhhhccceEEEEE-ecCChhHHHHHHHHHHHHHHHHHHHc
Q psy10095 410 TSGKQYGFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFV-GTNNHENLCKEFQNIQSLLKSVMDKL 476 (680)
Q Consensus 410 a~s~cyr~Ea~~CFR~EaGs~G~dtrGL~RvHQF~KVE~f~-~~~~pe~S~~~~eeml~~~e~il~~L 476 (680)
=+|.|+|.+| -|--.+++|-.|-.+|+|+|+ .| .++..+++.+-+...++.++..=
T Consensus 264 ylS~dlr~Ha----------vg~l~~~v~e~hDRdkfEvfay~~-g~~~~dal~~rI~a~~~~~~~~~ 320 (620)
T COG3914 264 YLSSDLRSHA----------VGFLLRWVFEYHDRDKFEVFAYSL-GPPHTDALQERISAAVEKWYPIG 320 (620)
T ss_pred Eeccccccch----------HHHHHHHHHHHhchhheEEEEEec-CCCCchhHHHHHHHhhhheeccC
Confidence 3578888875 477889999999999999999 55 58888888888888777776433
No 270
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.87 E-value=5.2e+02 Score=22.23 Aligned_cols=24 Identities=4% Similarity=-0.337 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 189 YKEFVGVEKITTELEHKLVDLEQY 212 (680)
Q Consensus 189 ~r~l~~~~~~L~~~rn~lsk~i~~ 212 (680)
..........|+.+|+....+++.
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666555554
No 271
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=21.80 E-value=5.4e+02 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 225 LEKKYLERKQLKAEIKKFDSFMLDYQRNVIIK 256 (680)
Q Consensus 225 ~e~l~~~~k~Lk~elk~Le~~l~~le~~l~~~ 256 (680)
++.++.+....-.+++.|+.+...+..++..+
T Consensus 57 l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 57 LEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666555555544443
No 272
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=21.79 E-value=3.8e+02 Score=32.05 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHH
Q psy10095 164 DLIVNQLKQRRIDIS---EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIK 240 (680)
Q Consensus 164 e~v~~~l~~R~~~~d---ld~l~~l~~~~r~l~~~~~~L~~~rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk 240 (680)
-.+|..|++|.+..+ ++++..+.+..+.+...++.|...-+.+.+.+...+. +...+..++..|+++.+
T Consensus 19 r~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~--------~t~~ll~~~~~L~~~~~ 90 (618)
T PF06419_consen 19 RNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKS--------ETSDLLEEASELREQKE 90 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 356666777766544 4666667777777777777777777777766654321 23557777777777776
Q ss_pred HHHHHHHHH
Q psy10095 241 KFDSFMLDY 249 (680)
Q Consensus 241 ~Le~~l~~l 249 (680)
.++.+..-+
T Consensus 91 ~~~~k~~ll 99 (618)
T PF06419_consen 91 ELELKKKLL 99 (618)
T ss_pred HHHHHHHHH
Confidence 666554443
No 273
>PRK01156 chromosome segregation protein; Provisional
Probab=21.76 E-value=3.4e+02 Score=33.55 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=8.3
Q ss_pred CCCCChHHHHHhhc
Q psy10095 635 RKPYTVEESERAAG 648 (680)
Q Consensus 635 ~~pyt~~~ae~a~g 648 (680)
++|.+..|.++...
T Consensus 832 DEpt~~lD~~~~~~ 845 (895)
T PRK01156 832 DEPTAFLDEDRRTN 845 (895)
T ss_pred eCCCCcCCHHHHHH
Confidence 66776666555443
No 274
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.76 E-value=6e+02 Score=31.17 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=8.8
Q ss_pred ceeeccc-ccccccCh
Q psy10095 55 AQFYCLH-CARHFIDE 69 (680)
Q Consensus 55 gq~yC~~-C~r~F~~~ 69 (680)
..|||.| ++=|.++-
T Consensus 379 ~ryy~~H~~GvH~V~L 394 (717)
T PF10168_consen 379 DRYYCYHNAGVHSVTL 394 (717)
T ss_pred ceEEEEecCccEEEEe
Confidence 6778876 34444443
No 275
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.73 E-value=5.3e+02 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 223 SQLEKKYLERKQLKAEIKKFDSFMLDYQR 251 (680)
Q Consensus 223 ~e~e~l~~~~k~Lk~elk~Le~~l~~le~ 251 (680)
+++.++.+++.+|+.+++.|++++.+++.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666677777777777777666654
No 276
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.03 E-value=7.2e+02 Score=29.84 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCC
Q psy10095 203 EHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVI---IKVLKLPNY 263 (680)
Q Consensus 203 rn~lsk~i~~~k~~~~~~e~~e~e~l~~~~k~Lk~elk~Le~~l~~le~~l~---~~~l~LPN~ 263 (680)
|..+.+.+..++...+.. .++..++..+++.++.+++++..++...++.+. ..+-++|..
T Consensus 421 R~pL~~e~r~lk~~~~~~-~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 421 RAPLIEEYRRLKEKASNR-ESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HhHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444555444322211 134555667888888888888887776666444 444455543
No 277
>KOG0150|consensus
Probab=20.98 E-value=45 Score=36.46 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.7
Q ss_pred CceeecccccccccCh-HHHHHhhccchhhh
Q psy10095 54 EAQFYCLHCARHFIDE-HALKEHFRTKVHKR 83 (680)
Q Consensus 54 ~gq~yC~~C~r~F~~~-~~l~~H~k~K~HKr 83 (680)
.|..||-.|-=||-|. .+...|-++|.||-
T Consensus 8 ~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke 38 (336)
T KOG0150|consen 8 QPKKFCDYCKIWIKDNPASVRFHERGKRHKE 38 (336)
T ss_pred ccchhhhhhhhhhcCChHHHHhHhhhhHHHH
Confidence 4778999999999875 57888999999984
No 278
>KOG0972|consensus
Probab=20.91 E-value=6.2e+02 Score=27.94 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10095 181 DFTQMREKYKEFVGVEKITTELEH 204 (680)
Q Consensus 181 ~l~~l~~~~r~l~~~~~~L~~~rn 204 (680)
+|..+-++||.+..++.+++..-+
T Consensus 274 qL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 274 QLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554433
No 279
>PRK09039 hypothetical protein; Validated
Probab=20.79 E-value=5.5e+02 Score=28.46 Aligned_cols=21 Identities=5% Similarity=-0.273 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10095 191 EFVGVEKITTELEHKLVDLEQ 211 (680)
Q Consensus 191 ~l~~~~~~L~~~rn~lsk~i~ 211 (680)
.+..+++.|+.+...+...|.
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 280
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.78 E-value=8.1e+02 Score=28.96 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=8.2
Q ss_pred EeCchHHHHHHHHHHHH
Q psy10095 307 YLGNAAKFEYLIPIILK 323 (680)
Q Consensus 307 L~G~gA~LE~ALi~y~l 323 (680)
+.+.+.+-|++ |||+-
T Consensus 491 li~~A~L~E~~-iQYaN 506 (560)
T PF06160_consen 491 LIDNATLAEQL-IQYAN 506 (560)
T ss_pred HHHHHHHHHHH-HHHHh
Confidence 44444444444 66665
No 281
>PTZ00448 hypothetical protein; Provisional
Probab=20.64 E-value=1e+02 Score=34.68 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=40.5
Q ss_pred ceeecccccccccChHHHHHhhccchhhhhhhhc--ccCCCCHHHHHHhcC
Q psy10095 55 AQFYCLHCARHFIDEHALKEHFRTKVHKRRLKAL--EVEPYTVEESERAAG 103 (680)
Q Consensus 55 gq~yC~~C~r~F~~~~~l~~H~k~K~HKrr~K~l--~~~pyt~~eae~aag 103 (680)
+.|-|.-|.--|.|......|+||--|+=-||+- .-.|-|.+|=+...|
T Consensus 313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLppvse~eF~~~i~ 363 (373)
T PTZ00448 313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEFLELQQ 363 (373)
T ss_pred CCccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 3578999999999999999999999997666654 257889888776655
No 282
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.59 E-value=1.6e+02 Score=23.90 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=21.9
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHHHHHcCCceEEeecC
Q psy10095 445 KVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRICKAP 486 (680)
Q Consensus 445 KVE~f~~~~~pe~S~~~~eeml~~~e~il~~L~LpyRVv~m~ 486 (680)
||.+|... .... -..+..+|+++|++|..+++.
T Consensus 1 ~i~ly~~~-~Cp~--------C~~ak~~L~~~~i~~~~i~i~ 33 (75)
T cd03418 1 KVEIYTKP-NCPY--------CVRAKALLDKKGVDYEEIDVD 33 (75)
T ss_pred CEEEEeCC-CChH--------HHHHHHHHHHCCCcEEEEECC
Confidence 57777743 2222 234667778899999998874
No 283
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.51 E-value=1.1e+03 Score=27.33 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=5.1
Q ss_pred EeCchHHHH
Q psy10095 307 YLGNAAKFE 315 (680)
Q Consensus 307 L~G~gA~LE 315 (680)
|++..|.+|
T Consensus 236 L~~~Ias~e 244 (420)
T COG4942 236 LKNEIASAE 244 (420)
T ss_pred HHHHHHHHH
Confidence 555555555
No 284
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.02 E-value=8.1e+02 Score=25.36 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10095 189 YKEFVGVEKITTELEHKLVDLE 210 (680)
Q Consensus 189 ~r~l~~~~~~L~~~rn~lsk~i 210 (680)
++.+..+..+++.+.-.+...|
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i 104 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEI 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
Done!