RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10095
(680 letters)
>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General
function prediction only].
Length = 126
Score = 99.0 bits (246), Expect = 2e-24
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 6 TKKKKNCTNKRSI-KTKLYKRDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCAR 64
TK+KK +N+ I +T+L+ RDLDQI D + ++K L D + PG Q YC+ CAR
Sbjct: 6 TKRKKRRSNRLRIKRTRLFGRDLDQIKNDLSTKESQKKL--PYDPELPGLGQHYCIECAR 63
Query: 65 HFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGY 104
+FI E AL EH + KVHKRR K L PYT E++E A G
Sbjct: 64 YFITEKALMEHKKGKVHKRRAKELREVPYTQEDAEAAVGL 103
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus,
particularly the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 56 QFYCLHCARHFIDEHALKEHFRTKVHK 82
QFYC+ C ++F E+AL+ H ++K HK
Sbjct: 1 QFYCVACDKYFKSENALENHLKSKKHK 27
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 44.3 bits (105), Expect = 2e-04
Identities = 55/272 (20%), Positives = 105/272 (38%), Gaps = 35/272 (12%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D K + N DL+ LK R + + D ++ E + EL+ K +L +
Sbjct: 3 DRKLLRNNPDLVKESLKARGL-SVDIDLEKLIALDDERKKLLSEIEELQAKRNELSK--Q 59
Query: 215 VNKSKLEP-SQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP---- 269
+ K+K + ++E+ E K+LK E+ + + + + + K+L +PN S P
Sbjct: 60 IGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119
Query: 270 -----------EVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEY-L 317
++ P E K+ + V+ T + + AK E L
Sbjct: 120 EEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERAL 179
Query: 318 IPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYEER 377
I +L K+ + L ++G G L E D+ ++ E+
Sbjct: 180 INFMLD--LLEKNGYQEIYPPYLVNEESLDGTGQ----------LPKFEEDIFKL--EDT 225
Query: 378 RNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYV 409
+L+ +A + + H N + ++LP+KY
Sbjct: 226 DLYLIPTAEVPL-TNLHRNEILEEEELPIKYT 256
>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger. Family of C2H2-type
zinc fingers, present in matrin, U1 small nuclear
ribonucleoprotein C and other RNA-binding proteins.
Length = 35
Score = 34.9 bits (81), Expect = 0.005
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 56 QFYCLHCARHFIDEHALKEHFRTKVHKRRLK 86
FYC C F DE +++ H + K HK+ +K
Sbjct: 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 35.1 bits (81), Expect = 0.056
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 191 EFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSF 245
E +++ +EL+ +L DLE+ + +S+LE E L R+ LK+ ++ +S
Sbjct: 80 ELSELKQQLSELQEELEDLEERIAELESELE-DLKEDLQLLRELLKSLEERLESL 133
>gnl|CDD|206339 pfam14171, SpoIISA_toxin, Toxin SpoIISA, type II toxin-antitoxin
system. SpoIISA is a toxin which causes lysis of
vegetatively growing cells. It forms part of a type II
toxin-antitoxin system, where the SpoIISB protein,
pfam14185, acts as an antitoxin. It is a transmembrane
protein, with a cytoplasmic domain accounting for
approximately two-thirds of the protein. The structure
of the cytoplasmic domain resembles that of the GAF
domains, Pfam: PF01590. SpoIISB binds to the cytoplasmic
domain of SpoIISA with high affinity.
Length = 240
Score = 32.0 bits (73), Expect = 0.88
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 423 ENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDKLNMKYRI 482
TL +R++N ++ E ++++ G+ + ++ LL DK+++ +
Sbjct: 106 NETLHMYL-NRLKNFQYLLKNEPIHVYYGSKE-----AYIEGLKELLALYADKMDISASL 159
Query: 483 CK--APADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIVFFIQEMSWMKKLAEK 540
C D E + V + L+ D K+ + I F IQ+ ++ KL+
Sbjct: 160 CPFNTQGDKDQLLEHIKDRADVQA-KLDRKKVYYDEKGKLVL-IPFSIQDNLYVIKLSSD 217
Query: 541 IIPNIDEN 548
I + E
Sbjct: 218 SI--VTEF 223
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 29.9 bits (68), Expect = 0.98
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 56 QFYCLHCARHFIDEHALKEHFRTKVHKR 83
CL+C + F AL++H R K H +
Sbjct: 50 GNECLYCGKQFKSLEALRQHMRDKGHCK 77
>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms].
Length = 90
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 63 ARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERA 101
ARH + ALK+ +H AL + YT EE +
Sbjct: 57 ARHRLVYSALKDELSGGIH-----ALALHTYTPEEWKGK 90
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 31.4 bits (72), Expect = 1.6
Identities = 8/95 (8%), Positives = 28/95 (29%), Gaps = 17/95 (17%)
Query: 164 DLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPS 223
+ + + + + E+ + + + E + + E
Sbjct: 640 EAVAEEYLLEKSLLEEWIYENLSFQLNEILSNTNFPDKKE-----------------VVQ 682
Query: 224 QLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVL 258
L ++ ++ + K + + R V +K +
Sbjct: 683 FLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKAI 717
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.5 bits (72), Expect = 1.8
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 180 FDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYL--------- 230
DF +++E+ KE E+ ELE +L +++ L K +K
Sbjct: 327 VDFPELKEELKEL---EEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETK 383
Query: 231 -----ERKQLKAEIKKFDSFMLDYQRNVIIKVLK 259
E ++L+ E+K+ + I V K
Sbjct: 384 EKLSEELEELEEELKELKEELESLYSEGKISVNK 417
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a
zinc-finger domain with the CxxCx(12)Hx(6)H motif,
found in multiple copies in a wide range of proteins
from plants to metazoans. Some member proteins,
particularly those from plants, are annotated as being
RNA-binding.
Length = 25
Score = 27.5 bits (62), Expect = 1.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 57 FYCLHCARHFIDEHALKEHFRTKVH 81
FYC C F E LK H R K H
Sbjct: 1 FYCELCNVTFTSESQLKSHLRGKKH 25
>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14.
Length = 100
Score = 29.4 bits (67), Expect = 2.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 224 QLEKKY-LERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269
+L +KY L+R+ LK EIKK S + + K+ LP NS P
Sbjct: 15 KLVQKYHLKRRSLKKEIKKVSSL--SEKWEIHGKLQSLPR---NSAP 56
>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 601
Score = 31.0 bits (70), Expect = 2.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 257 VLKLPNYLDNSTPEVYETIYEYDPDREGKNKI----DMDALSKYVQY 299
V+++P L + PE E I EY P + K +++A + QY
Sbjct: 327 VMEVPVQLLANAPE--EEIVEYTPGEIPEFKRVEFEEVNAREVFEQY 371
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 27.2 bits (60), Expect = 2.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 57 FYCLHCARHFIDEHALKEHFRT 78
F C C + F + ALK H R
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRK 22
>gnl|CDD|236617 PRK09723, PRK09723, putative fimbrial-like adhesin protein;
Provisional.
Length = 421
Score = 30.9 bits (70), Expect = 2.7
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 359 NMVLVNNENDLSEIGYEERRNHL-VGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGF 417
N ++ L G + + L S ++C N S + V SGK Y
Sbjct: 65 NNLVFYKPTQLGPTGVKLYWSQLDTASGGGFLYCNRSGNTSGGPMTIEHAMVDSGKMYNG 124
Query: 418 HNL 420
H L
Sbjct: 125 HKL 127
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 30.4 bits (68), Expect = 3.7
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 179 EFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAE 238
+++ EK KEF+ E + E K+ E ++ L+P + +ER L
Sbjct: 582 DYNALCQNEKAKEFILGELVKMAKEKKMKGFE---IIKAIHLDPVPFD---MERDLLTPT 635
Query: 239 IKKFDSFMLDYQRNVIIKVLKLPN 262
KK +L Y ++VI ++ K N
Sbjct: 636 FKKKRPQLLKYYQSVIDEMYKTTN 659
>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 30.0 bits (69), Expect = 3.7
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 175 IDISEFDFTQMREKYKEFVGVEKITTELE---HKLVDLEQYLLVNKSKLEPSQLEKKYLE 231
+DI D E YK I ELE +L D + L++NK L + E++
Sbjct: 244 VDIEAVDP---VEDYK------TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRA 294
Query: 232 RKQLKAEIKKF 242
+L A
Sbjct: 295 ALELAALGGPV 305
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 29.4 bits (67), Expect = 5.2
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 20/65 (30%)
Query: 527 FIQEMSWMKKLAEKIIPNIDENIG-----------MEYM------SFLKRTADRLCMKWN 569
F++E S MKKL+ PNI +G EYM FL++ ++L +K
Sbjct: 48 FLEEASIMKKLSH---PNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDL 104
Query: 570 RSYAQ 574
A
Sbjct: 105 LQMAL 109
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 30.0 bits (68), Expect = 5.3
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 162 NEDLIVNQLKQ----RRIDISEFDFTQMR------------EKYKEFVGVEKITTELEHK 205
NED+ Q K RR D E ++ K V K +LE +
Sbjct: 16 NEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEE 75
Query: 206 LVDLEQYLL-VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLD 248
++DLE + V ++ LEK+ E ++ + + SF+ +
Sbjct: 76 ILDLEAEIKEVEENL---ESLEKEINELEEWLNVLDEEKSFLDE 116
>gnl|CDD|221900 pfam13024, DUF3884, Protein of unknown function (DUF3884). This
family of proteins is functionally uncharacterized.
However several proteins are annotated as Tagatose
1,6-diphosphate aldolase, but evidence to support this
could not be found. This family of proteins is found in
bacteria. Proteins in this family are typically between
61 and 106 amino acids in length. There are two
completely conserved residues (Y and F) that may be
functionally important.
Length = 77
Score = 27.4 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 218 SKLEPSQLEKKYLERKQLKAEIKKFDSFMLDY 249
SKL + + K+LE L E SF +DY
Sbjct: 42 SKLSLDEFKNKFLELTNLTIEEVHISSFTVDY 73
>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, N5-carboxyaminoimidazole
ribonucleotide synthetase, which hydrolyzes ATP and
converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR.
In the presence of high concentrations of bicarbonate,
PurE is reported able to convert AIR to CAIR directly
and without ATP [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 352
Score = 29.2 bits (66), Expect = 6.8
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 158 HVLE-NEDLIVNQLKQRRIDISEFDFTQMREKYKEFV-GVEKITTELEHKLVDLEQYLLV 215
HVL+ + + Q+ + FD +E + IT E EH V+ + L
Sbjct: 26 HVLDPDANSPAVQVADHVVLAPFFD----PAAIRELAESCDVITFEFEHVDVEALEKLEA 81
Query: 216 NKSKLEPSQ-----LEKKYLERKQLKA 237
KL PS ++ + +++ L+
Sbjct: 82 RGVKLFPSPDALAIIQDRLTQKQFLQK 108
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 7.3
Identities = 29/140 (20%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 111 KIRKLQTQSLDKTAEIQPVREYCSALFITNDKLSQLCSNVSPSYDVKHVLENEDLIVNQL 170
++ L+ EI+ + E AL ++L + + + L+ + + L
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELE------EAERRLDALERELESL 819
Query: 171 KQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQ------ 224
+QRR + + ++ E +E +E+ ELE +L +LE+ L K +LE +
Sbjct: 820 EQRRERLEQ----EIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875
Query: 225 ---LEKKYLERKQLKAEIKK 241
L++ E+++L+ E+++
Sbjct: 876 EDELKELEEEKEELEEELRE 895
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 29.5 bits (66), Expect = 7.4
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 201 ELEHKLVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQR 251
+++ L+ + LL N + L P Q+E+ +R QLK +I++ + + D +R
Sbjct: 295 QMKDMLLAISNELLDNAADLSPDQVEQLRQDRLQLKKQIQQLEIHIRDKER 345
>gnl|CDD|237194 PRK12765, PRK12765, flagellar capping protein; Provisional.
Length = 595
Score = 29.5 bits (66), Expect = 8.0
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 182 FTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKY 229
F+++++ +E G + T+ + L + + L +K + ++ KY
Sbjct: 513 FSKLKDTLQEMTGKDGSLTKYDESLTNEIKSLTTSKESTQEL-IDTKY 559
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.3 bits (66), Expect = 8.6
Identities = 12/76 (15%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 166 IVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQL 225
+ +L++ + + ++RE+ +E ++ E E +L +L + + + + +L
Sbjct: 218 LKAELRELELALLVLRLEELREELEEL---QEELKEAEEELEELT--AELQELEEKLEEL 272
Query: 226 EKKYLERKQLKAEIKK 241
+ E ++ E++K
Sbjct: 273 RLEVSELEEEIEELQK 288
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 29.3 bits (66), Expect = 9.5
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 216 NKSKLEPSQLEKKYLER----KQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEV 271
+ + L++ Y ER K+L+ + + + +L K K L S +
Sbjct: 241 DVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHL---KTNKKSGKLTPSRKKE 297
Query: 272 YETIYEYDPDRE 283
+E + EY PD++
Sbjct: 298 FEILPEYVPDKK 309
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.1 bits (55), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 57 FYCLHCARHFIDEHALKEHFRT 78
+ C C + F + AL+EH RT
Sbjct: 1 YRCPECGKVFKSKSALREHMRT 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,199,122
Number of extensions: 3371179
Number of successful extensions: 3076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 70
Length of query: 680
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 577
Effective length of database: 6,369,140
Effective search space: 3674993780
Effective search space used: 3674993780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)