RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10095
(680 letters)
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 134 bits (339), Expect = 2e-37
Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 14 NKRSIKTKLYKRDLDQIDGDCKEENAEKLL---HQEIDFDKPGEAQFYCLHCARHFIDEH 70
+ K K + DLD+I + + + + + + E D D PG CL CAR+FID
Sbjct: 5 HHHLEKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDST 64
Query: 71 ALKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQSLDKTAEIQ 127
LK HFR+K HK+RLK L VEPY+ EE+ERAAG GSY P+ + T+ + E+
Sbjct: 65 NLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVPTEVSTEVPEMD 121
Score = 39.7 bits (92), Expect = 5e-04
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 635 RKPYTVEESERAAGYGSYQTPKIRKLQTQSLDKTAE 670
+PY+ EE+ERAAG GSY P+ + T+ + E
Sbjct: 84 VEPYSQEEAERAAGMGSYVPPRRLAVPTEVSTEVPE 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 3e-09
Identities = 59/420 (14%), Positives = 120/420 (28%), Gaps = 130/420 (30%)
Query: 15 KRSIKTKLYKRDL---DQI---------DGDCKEENAEKLL----HQEIDFDKPGEAQFY 58
+R +K+K Y+ L + + CK LL Q DF
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-----ILLTTRFKQVTDFLSAATTTHI 289
Query: 59 CLHCARHFIDEHALKEHFRTKVHKR----RLKALEVEPYTV--------EESERAAGYGS 106
L + +K + R + L P + + +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 107 YQTPKIRKLQTQSLD--KTAEIQPVREYCSALF-----ITNDKLSQLCSNVSPSYDVKHV 159
K+ + SL+ + AE + + + ++F I LS + +V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIK------- 401
Query: 160 LENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSK 219
+ ++VN+L + + VEK E + + YL +
Sbjct: 402 -SDVMVVVNKLHKYSL-------------------VEKQPKESTISIPSI--YLELKVKL 439
Query: 220 LEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYETIYEY- 278
L + ++ + K FDS L +P YLD Y Y +
Sbjct: 440 ENEYALHRSIVDHYNIP---KTFDSDDL------------IPPYLDQ-----Y--FYSHI 477
Query: 279 -----DPDREGKNKIDMDALSK-YVQYTNRLDIHYLGNAAKFE--------YLIPIIL-- 322
+ + + M + LD +L + + ++ +
Sbjct: 478 GHHLKNIEHPER----MTLFRMVF------LDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 323 ---KDYFTVKHNFMPFTNTDLCKGVI--VEGYGDH-YLSPHDNMVLVNNENDLSEIGYEE 376
K Y L ++ + ++ S + +++ + + I +EE
Sbjct: 528 KFYKPYICDNDP----KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI-FEE 582
Score = 56.8 bits (136), Expect = 2e-08
Identities = 58/420 (13%), Positives = 125/420 (29%), Gaps = 104/420 (24%)
Query: 32 GDCKE-----ENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDE--HALKEHFRTKVHKRR 84
+C E +KLL+Q D ++ + I L+ ++K ++
Sbjct: 190 KNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 85 LKALEVEPYTVEESE--RAAGYGSYQTPKI----RKLQ-TQSLDKTAEIQPVREYCSALF 137
L L V+ ++ A KI R Q T L ++ S
Sbjct: 247 LLVLL----NVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 138 ITNDKLSQLCSNV-------SPSYDVKH----------VLENEDLIVNQLKQRRID---- 176
T D++ L P + + + + K D
Sbjct: 299 -TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 177 -----ISEFDFTQMREKYKEFV----GVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEK 227
++ + + R+ + I T L L + + K + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL------LSL-IWFDVIKSDVMVVVN 409
Query: 228 KYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPEVYETIYEYDPDREGKNK 287
K + ++ + K+ + + +K+ L S + Y +D D
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 288 IDMDALSKYVQYTNRLDIHYLG-------NAAKFEYLIPIILKDY-F---TVKHNFMPFT 336
+D Y Y ++G + + L ++ D+ F ++H+ +
Sbjct: 469 LDQ-----YF-Y------SHIGHHLKNIEHPERMT-LFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 337 NTDLCKGVI--VEGYGDHYLSPHDNMVLVNNENDLSEI-----GYEERRNHLVGSAHMSM 389
+ + ++ Y Y+ +D E ++ I EE +L+ S + +
Sbjct: 516 ASGSILNTLQQLKFYKP-YICDNDP----KYERLVNAILDFLPKIEE---NLICSKYTDL 567
Score = 49.5 bits (117), Expect = 3e-06
Identities = 84/607 (13%), Positives = 183/607 (30%), Gaps = 162/607 (26%)
Query: 23 YKRDLDQIDGDCKE-ENAEK--LLHQEID--FDKPGEAQ-----FYCL-----HCARHFI 67
+ + D CK+ ++ K L +EID F+ L + F+
Sbjct: 29 FVDNFD-----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 68 DEHALKEHFR---TKVHKR-RLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQSLDKT 123
+E L+ +++ + + R ++ Y +R Y K L
Sbjct: 84 EE-VLRINYKFLMSPIKTEQRQPSMMTRMY---IEQRDRLYND--NQVFAKYNVSRLQPY 137
Query: 124 AEIQP-VREYCSALFITND------KLSQLCSNVSPSYDVKHVLENE------------D 164
+++ + E A + D K + + +V SY V+ ++ + +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 165 LIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQY---LLV-----N 216
++ L++ I ++ + + I EL L+ + Y LLV N
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVLLNVQN 255
Query: 217 KSKLEPSQLEKKYL---------------ERKQLKAEIKKFDSFMLDYQRNVIIKVL--- 258
L K L + + + D +++++K L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCR 314
Query: 259 --KLPNYLDNSTPEVYETIYEYDPDREGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEY 316
LP + + P I ++ D A ++ N + + +
Sbjct: 315 PQDLPREVLTTNPRRLSII--------AESIRDGLATWDNWKHVNCDKLTTI-IESSLNV 365
Query: 317 LIPIILKDYFTVKHNFMPF-TNTDLCKGVIVEGYGDHYLSPHDNMVLVNNENDLSEIGYE 375
L P + F F + + ++ + D + D MV+VN + S +
Sbjct: 366 LEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLV--- 417
Query: 376 ERRNHLVGSAHMSMFCAYHTNHSVNVKDLPVKYVTSGKQYGFHNLLCENTLK----TSKH 431
E++ K+ ++ E +K + H
Sbjct: 418 EKQP----------------------KES---------TISIPSIYLELKVKLENEYALH 446
Query: 432 SRVENLYNSIQREKVNLFVGTNN----------HENLCKEFQNIQSLLKSVMD------K 475
+ + YN + + + H + + + +D K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 476 LNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVYIQIVFFIQEMSWMK 535
+ A +L+T + + Y+ Y + N Y ++V I + ++
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKF-YKPY----------ICDNDPKYERLVNAI--LDFLP 553
Query: 536 KLAEKII 542
K+ E +I
Sbjct: 554 KIEENLI 560
Score = 45.6 bits (107), Expect = 5e-05
Identities = 86/602 (14%), Positives = 170/602 (28%), Gaps = 152/602 (25%)
Query: 164 DLIVNQLKQRRIDI---------SEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D + + + DI FD +++ K + E+I + K L
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 215 VNKSKLEPSQLEKKYLER----------KQLKAEIKKFDSFMLDY--QRNVII------- 255
+ ++ +K++E +K E ++ Y QR+ +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 256 --------KVLKLPNYLDNSTPEVYETIYEYDPDRE-----GKNKIDMDALSKY-VQYTN 301
LKL L P I GK + +D Y VQ
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 302 RLDIHYL--GNAAKFEYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDN 359
I +L N E ++ ++ K + + N+ DH +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--------------RSDHSSNIKLR 226
Query: 360 MVLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSV----NVKDLPVKYVTSGKQY 415
+ E R L + + + NV++ K +
Sbjct: 227 I----------HSIQAELRRLLKSKPY---------ENCLLVLLNVQN--AKAWNA---- 261
Query: 416 GFHNLLCENTLKTSKHSRVENLYNSIQREKVNLFVGTNNHENLCKEFQNIQSLLKSVMDK 475
F NL C+ L T++ +V + ++ ++L ++H + LLK
Sbjct: 262 -F-NLSCK-ILLTTRFKQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLLLK----Y 310
Query: 476 LNMKY-----RICK-AP------ADVLHTSESHRLEY--QVYSYSLNSWVTCMDLNA--- 518
L+ + + P A+ + + V L + + LN
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIE-SSLNVLEP 368
Query: 519 ----KVYIQIVFFIQEMSWMKKLAEKIIPNIDENIGMEYMSFLKRTADRLCMKWNRSYAQ 574
K++ ++ F L I ++ ++ M ++ L + L K +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTI 426
Query: 575 VL--GWLRTKCQISIIRTISMRIRGTRKRARGLGCEDGAELNMKDSLD----------AN 622
+ +L K ++ + I + +D LD
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI----PPYLDQYFYSHIGHHLK 482
Query: 623 LVQMSTNYCLVLRKPYT----VEESERAAGYGSYQTPKIRKLQTQSLDKTAEYVPPQYPM 678
++ L R + +E+ R + I Q L Y+ P
Sbjct: 483 NIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPK 540
Query: 679 EE 680
E
Sbjct: 541 YE 542
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 4e-05
Identities = 86/501 (17%), Positives = 149/501 (29%), Gaps = 177/501 (35%)
Query: 4 PQTKKKKNCTNKRSIKTKLYKRDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCA 63
Q K IK + R + + D K +A L + G AQ +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--LFRAVGE----GNAQLVAI--- 159
Query: 64 RHF---------IDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRK 114
F +E L++ ++T + + L ++ S T K
Sbjct: 160 --FGGQGNTDDYFEE--LRDLYQT--YHVLVGDL------IKFSAETLSELIRTTLDAEK 207
Query: 115 LQTQSLD-----KTAEIQPVREY-CSALF----ITNDKLSQLC--------SNVSPSYDV 156
+ TQ L+ + P ++Y S I + QL +P ++
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAHYVVTAKLLGFTPG-EL 263
Query: 157 KHVLE-----NEDLIVNQLKQRRIDISEFD----FTQMREKYKE---FVGVE--KIT--T 200
+ L+ ++ L+ I+E D F K F+GV + T
Sbjct: 264 RSYLKGATGHSQGLVTAVA------IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 201 ELEHKLVDLEQYLLVNKSKLEPS-QLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLK 259
L ++ E L N+ PS L L ++Q++ + K +S L + V I
Sbjct: 318 SLPPSIL--EDSLENNEG--VPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEI---- 368
Query: 260 LPNYLDNSTPEVY------ETIYEYDPD-REGKNKIDMDALSKYVQYTNRLDIHYLGNAA 312
L N + +++Y + R+ K +D S+ + ++ R
Sbjct: 369 ---SLVNG-AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SR-IPFSER--------KL 414
Query: 313 KF--EYLIPIILKDYFTVKHNFMPFTNTDLCKGVIVEGYGDH--YLSPHDNMVLVNNEND 368
KF +L P+ PF H L P +++ D
Sbjct: 415 KFSNRFL-PV------AS-----PF----------------HSHLLVPASDLIN----KD 442
Query: 369 LSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNVKDL--PVKYVTSGKQYGFHNLLCENTL 426
L + N KD+ PV G L
Sbjct: 443 LVKNNVS-----------------------FNAKDIQIPVYDTFDGS-----------DL 468
Query: 427 KTSKHSRVENLYNSIQREKVN 447
+ S E + + I R V
Sbjct: 469 RVLSGSISERIVDCIIRLPVK 489
Score = 37.3 bits (86), Expect = 0.021
Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 42/155 (27%)
Query: 53 GEAQFYC-LHCARHFID-EHALKEHFRTKVHKR-RLKALEVEPYTVEESERAAGYGSYQT 109
GE Y L + E ++ V R + V G +Y
Sbjct: 1765 GE---YAALASLADVMSIESLVE-----VVFYRGMTMQVAVP-------RDELGRSNYGM 1809
Query: 110 PKIRKLQTQSLDKTAEIQPVREYCSA-----LFITNDKLSQLCSNVSPS-YDVKHVL--E 161
I + + +Q V E + I N NV Y V +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-------NVENQQY----VAAGD 1858
Query: 162 NEDL-----IVNQLKQRRIDISEFDFTQMREKYKE 191
L ++N +K ++IDI E + E+ +
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.006
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 16/42 (38%)
Query: 236 KAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP--EVYETI 275
K +KK + LKL Y D+S P + T+
Sbjct: 19 KQALKKLQA------------SLKL--YADDSAPALAIKATM 46
Score = 31.1 bits (69), Expect = 0.71
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 653 QTPKIRKLQTQSLDKTAEYVPPQYP 677
+ ++KLQ SL Y P
Sbjct: 18 EKQALKKLQA-SLKL---YADDSAP 38
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 33.0 bits (74), Expect = 0.086
Identities = 12/65 (18%), Positives = 20/65 (30%)
Query: 25 RDLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKRR 84
R I+ A+K + + C C F + H+ K H +
Sbjct: 62 RRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
Query: 85 LKALE 89
L+ E
Sbjct: 122 LRLRE 126
Score = 31.1 bits (69), Expect = 0.43
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 58 YCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESE 99
C C+ I E H++++ H +++ +
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVP 75
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 33.4 bits (77), Expect = 0.27
Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D+K + EN +L+ N L +R ++ + E+ K L H+ +
Sbjct: 3 DIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAV--E 60
Query: 215 VNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
+ K + + +++ + +++ I + ++ + + ++ + + +LPN S P
Sbjct: 61 IGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPV 116
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 32.7 bits (75), Expect = 0.45
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 5/104 (4%)
Query: 167 VNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLE 226
K+ S+ + K KE G + + +L QL+
Sbjct: 53 TEASKKLINICSK-AVGAKK-KAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLK 110
Query: 227 KKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
+ K L ++ + +L + N L S P
Sbjct: 111 Q---LSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPI 151
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 29.4 bits (67), Expect = 0.48
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRTKVH 81
GE + C C+R + H+ T
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHK 35
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.2 bits (74), Expect = 0.53
Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 155 DVKHVLE----NEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLE 210
D+ L + ++I K+R + D ++ +YKE+V + E KL ++
Sbjct: 3 DINAFLVEKGGDPEIIKASQKKRGDSVELVD--EIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 211 QYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
+ + K + E+++L E K+ + +N+ K+ ++ N + S +
Sbjct: 61 K--EIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVD 118
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 28.9 bits (65), Expect = 1.0
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 44 HQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRT 78
HQ + +F C C + F ++ H
Sbjct: 26 HQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.9 bits (71), Expect = 1.3
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEF--DFTQMREKYKEFVGVEKITTELEHKLVDLEQY 212
D+ + E D + +L R ++ ++ ++ +E + K L + L +
Sbjct: 3 DINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRRE---IIKRLEALRSERNKLSK- 58
Query: 213 LLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
+ K K E + K+LK EI + + + + + +L +PN S P
Sbjct: 59 -EIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPV 115
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 31.0 bits (71), Expect = 1.5
Identities = 16/125 (12%), Positives = 42/125 (33%), Gaps = 25/125 (20%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEH---------K 205
D+K + + ++ ++++ + + + + +E + L+ K
Sbjct: 3 DLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQE------LKKRLQEVQTERNQVAK 56
Query: 206 LVDLEQYLLVNKSKLEPSQLEKKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLD 265
V K P + E K L E K+ + + + + + +L++P
Sbjct: 57 RV----------PKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106
Query: 266 NSTPE 270
P
Sbjct: 107 PGAPV 111
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 32 GDCKEENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRT 78
G + ++L + ID + C R F H L H
Sbjct: 4 GSSGQPIKQELSCKWID---EAQLSRPKKSCDRTFSTMHELVTHVTM 47
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 28.6 bits (63), Expect = 2.4
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 10/93 (10%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGYGSYQTPKI 112
G ++F C C+ + L H H R + P+
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDD----------NHETDNNNPKRWSKPRK 65
Query: 113 RKLQTQSLDKTAEIQPVREYCSALFITNDKLSQ 145
R L + A+ YC F + LS
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV 98
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 30.1 bits (68), Expect = 2.6
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 267 STPEVYETIYEYDPDR--EGKNKIDMDALSKYVQYTNRLDIHYLGNAAKFEYLIPIILKD 324
+ + ++ R ++ M R + ++ K + IP K+
Sbjct: 259 GNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE 318
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 30.0 bits (68), Expect = 2.7
Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 22/147 (14%)
Query: 143 LSQLCSNVSPSYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTEL 202
L ++ S +P VK LE+ L L + D + MRE + +
Sbjct: 77 LVEVRSMANPPAAVKLALESIAL---LLGESTTDWKQIRSIIMRENFIPTIVNFSAEEIS 133
Query: 203 EHKLVDLEQYLLVNKSKLEP-----SQLEKKYLERK--------------QLKAEIKKFD 243
+ +++ + N S S ++ L+ E++K +
Sbjct: 134 DAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLE 193
Query: 244 SFMLDYQRNVIIKVLKLPNYLDNSTPE 270
D Q+ + +L++P P
Sbjct: 194 DDAKDNQQKLEALLLQVPLPPWPGAPV 220
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 30.1 bits (67), Expect = 3.4
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 166 IVNQLKQRRIDISEFDFTQ-MREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQ 224
+ ++ I D + M+ + ++F+ + K L KL + +L
Sbjct: 731 LREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKY 790
Query: 225 LEKKYLER--KQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNS 267
K L KQLK +I + + + +VL+ + +
Sbjct: 791 SRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPN 835
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation,
ligase, metal-binding; NMR {Homo sapiens}
Length = 101
Score = 27.6 bits (61), Expect = 4.2
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 50 DKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKR 83
D +A C+ C + DE H K
Sbjct: 12 DPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTG 45
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.4 bits (65), Expect = 4.6
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 26 DLDQIDGDCKEENAEKLLHQEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKRRL 85
D ++ K + + + G YC C+R F + H K+HK+
Sbjct: 265 DAAAVENLIKSDFEHSYCRGSLRSEAKG---IYCPFCSRWFKTSSVFESHLVGKIHKKNE 321
Query: 86 K 86
Sbjct: 322 S 322
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.3 bits (66), Expect = 4.8
Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 167 VNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLE 226
+ L + + S+ + EK K+ ++ + E ++ + + L ++
Sbjct: 50 ADNLNKLKNLCSK----TIGEKMKK----KEPVGDDESVPENVLSFDDLTADALANLKVS 101
Query: 227 KKYLERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTPE 270
+ R + I K D+ + + + ++ N L S P
Sbjct: 102 QIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPI 145
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.0 bits (65), Expect = 5.8
Identities = 24/165 (14%), Positives = 65/165 (39%), Gaps = 18/165 (10%)
Query: 79 KVHKRRLKALEVEPYTVEESERAAGYGSYQTPKIRKLQTQSLDKTAEIQPVREYCSALFI 138
++K +E + +E+ T + + L+ + D T + E L
Sbjct: 979 VTADGKIKKMEDDILIMEDQNNKL------TKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 139 TNDKLSQLCSNVSPSYDVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKI 198
+K + S +++ L+ E+ +L++ + + + + +++ ++
Sbjct: 1033 LKNKHESMIS------ELEVRLKKEEKSRQELEKIKRKLEG----ESSDLHEQIAELQAQ 1082
Query: 199 TTELEHKLVDLEQYLLVNKSKLEPSQLEKKYL--ERKQLKAEIKK 241
EL+ +L E+ L ++LE +K + ++L++ I
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 27.1 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 224 QLEKKYLE-RKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269
LE+KY R+ K EI+K S L + + K+ P NS P
Sbjct: 15 NLEQKYHLIRRSSKQEIRKVTS--LSDKWEIHGKLQSPPR---NSAP 56
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 28.0 bits (61), Expect = 6.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRTKVHKR 83
+QF C C F +LK+H R H +
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTK 101
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.4 bits (56), Expect = 6.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 56 QFYCLHCARHFIDEHALKEHFRT 78
F C C R F + LK H+R+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRS 24
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 26.5 bits (59), Expect = 6.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRT 78
G+ F C C R+F L H RT
Sbjct: 46 GQKPFQCRICMRNFSRSDHLTTHIRT 71
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 28.7 bits (63), Expect = 9.4
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 185 MREKYKEFVGVEKITTELEHKLVDLEQYLLVNKSKLEPSQLEKKYLER--KQLKAEIKKF 242
M+ + ++F+ + K L KL + +L K L KQLK +I +
Sbjct: 849 MKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISES 908
Query: 243 DSFMLDYQRNVIIKVLKLPNYLDNS 267
+ + +VL+ + +
Sbjct: 909 QAVIQLDDLRRRKRVLRRLGFCTPN 933
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,206,740
Number of extensions: 612291
Number of successful extensions: 1348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1328
Number of HSP's successfully gapped: 52
Length of query: 680
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 580
Effective length of database: 3,909,693
Effective search space: 2267621940
Effective search space used: 2267621940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)