RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10095
(680 letters)
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 110 bits (277), Expect = 4e-30
Identities = 39/63 (61%), Positives = 44/63 (69%)
Query: 45 QEIDFDKPGEAQFYCLHCARHFIDEHALKEHFRTKVHKRRLKALEVEPYTVEESERAAGY 104
E D D PG CL CAR+FID LK HFR+K HK+RLK L VEPY+ EE+ERAAG
Sbjct: 4 AEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGM 63
Query: 105 GSY 107
GSY
Sbjct: 64 GSY 66
Score = 32.4 bits (74), Expect = 0.016
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 635 RKPYTVEESERAAGYGSY 652
+PY+ EE+ERAAG GSY
Sbjct: 49 VEPYSQEEAERAAGMGSY 66
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 35.7 bits (82), Expect = 0.003
Identities = 16/117 (13%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 155 DVKHVLENEDLIVNQLKQRRIDISEFDFTQMREKYKEFVGVEKITTELEHKLVDLEQYLL 214
D+K + + ++ ++++ + + + + +E + L+ +
Sbjct: 3 DLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQE------LKKRLQEVQ---TERNQ 53
Query: 215 VNKSKLEPSQLEKKYL--ERKQLKAEIKKFDSFMLDYQRNVIIKVLKLPNYLDNSTP 269
V K + EK+ L K L E K+ + + + + + +L++P P
Sbjct: 54 VAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 30.2 bits (67), Expect = 0.76
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 462 FQNIQSLLKSVMDKLNMKYRICKAPADVLHTSESHRLEYQVYSYSLNSWVTCMDLNAKVY 521
F N + V +L ++ K ++ + L +++ S +L+ T M +
Sbjct: 235 FVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSP 294
Query: 522 IQIVFFIQEMSWMKKLAEKIIPNIDENIGMEYMSFLK 558
++ +SW K + ID I Y S LK
Sbjct: 295 LK-----GSVSWTGKPVSYYLHTIDRTILENYFSSLK 326
>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 237
Score = 29.6 bits (65), Expect = 0.92
Identities = 16/148 (10%), Positives = 37/148 (25%), Gaps = 11/148 (7%)
Query: 306 HYLGNAAKFEYLIPII-----LKDYFTVKHNFMPFTNTDLCKGVIVEGYGDHYLSPHDNM 360
+ A F + ++ VK +P + G+G
Sbjct: 85 QTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSIT-PTRWQK 143
Query: 361 VLVNNENDLSEIGYEERRNHLVGSAHMSMFCAYHTNHSVNV--KDLPVKYVTSGKQYG-- 416
++ + E + M CA + D + G G
Sbjct: 144 PDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDGILQGTT 203
Query: 417 -FHNLLCENTLKTSKHSRVENLYNSIQR 443
+ + C + ++ + + I+
Sbjct: 204 SYGPVPCGKPGVPAIYTNLIKFNSWIKD 231
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 25.1 bits (55), Expect = 2.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRT 78
G+ F C C F + H +
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKV 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 25.3 bits (56), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRT 78
GE + C+ C + F L +H R
Sbjct: 4 GEKPYGCVECGKAFSRSSILVQHQRV 29
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRT 78
GE + C HC + F + L HF+
Sbjct: 5 GEKPYACSHCDKTFRQKQLLDMHFKR 30
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 25.4 bits (56), Expect = 5.1
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 456 ENLCKEFQNIQSLLKSVMDKLNMKYRICKAPADV 489
K + + +L + KL KAP +V
Sbjct: 7 RRQEKRLKELLALAERSQRKLASPGFREKAPKEV 40
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (52), Expect = 6.1
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 57 FYCLHCARHFIDEHALKEHFRTKVHKRR 84
++C +C F + L +H ++K H ++
Sbjct: 2 YHCTYCNFSFKTKGNLTKHMKSKAHSKK 29
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.2 bits (53), Expect = 6.6
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 53 GEAQFYCLHCARHFIDEHALKEHFRTKVHKRRL 85
GE + C C F +K H + H +
Sbjct: 5 GEKPYECYICHARFTQSGTMKMHIL-QKHTENV 36
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 27.3 bits (59), Expect = 6.7
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 5/133 (3%)
Query: 510 WVTCMDLNAKVYIQIVFFIQEMSWMKKLAEKIIPNIDENIGMEYMSFLKRTADRLCMKWN 569
+ + + Y +V F + + + N +IG F+ A+ + +K
Sbjct: 157 FTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYV-NSVNSIGN--GLFIDPEAESVVIKPK 213
Query: 570 RSYAQVLGWLRTKCQISIIRTISMRIRGTRKRARGLGCEDGAELNMKDSLDANLVQMSTN 629
+ + G ++ +R R++ + G E G + A ++Q+ T
Sbjct: 214 DGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT- 272
Query: 630 YCLVLRKPYTVEE 642
L P +
Sbjct: 273 -ALHKEGPAIFDR 284
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,532,739
Number of extensions: 123741
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 19
Length of query: 680
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 589
Effective length of database: 1,158,166
Effective search space: 682159774
Effective search space used: 682159774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)