Query psy10096
Match_columns 125
No_of_seqs 110 out of 488
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:46:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 99.5 7.5E-14 2.6E-18 119.7 8.3 95 2-98 655-766 (823)
2 1pb7_A N-methyl-D-aspartate re 99.3 4.8E-12 1.6E-16 97.3 5.7 86 6-97 192-291 (292)
3 3g3k_A Glutamate receptor, ion 99.2 2.2E-11 7.6E-16 90.1 4.5 93 3-97 153-258 (259)
4 1yae_A Glutamate receptor, ion 99.1 9.1E-11 3.1E-15 90.2 6.0 105 3-109 187-304 (312)
5 2rc8_A Glutamate [NMDA] recept 99.1 1.3E-10 4.4E-15 89.0 4.8 75 21-97 201-293 (294)
6 2a5s_A N-methyl-D-aspartate re 99.0 5.3E-10 1.8E-14 85.2 5.8 74 22-97 193-283 (284)
7 2v3u_A Glutamate receptor delt 98.9 3E-09 1E-13 78.3 5.6 93 3-97 155-264 (265)
8 1mqi_A Glutamate receptor 2; G 98.8 9.1E-09 3.1E-13 76.1 7.0 92 4-97 154-262 (263)
9 1ii5_A SLR1257 protein; membra 98.0 7.4E-06 2.5E-10 58.4 5.0 73 19-93 139-226 (233)
10 4f3p_A Glutamine-binding perip 98.0 5.1E-06 1.7E-10 60.7 3.8 73 19-93 155-242 (249)
11 3i6v_A Periplasmic His/Glu/Gln 97.9 1.3E-05 4.5E-10 58.2 4.5 74 19-94 129-218 (232)
12 3k4u_A Binding component of AB 97.9 8.4E-06 2.9E-10 59.2 3.3 74 19-94 140-229 (245)
13 3del_B Arginine binding protei 97.8 2.5E-05 8.5E-10 56.3 5.4 74 19-94 142-233 (242)
14 3kzg_A Arginine 3RD transport 97.8 8.4E-06 2.9E-10 58.9 2.0 74 19-94 135-231 (237)
15 2pyy_A Ionotropic glutamate re 97.8 1.7E-05 5.9E-10 56.1 3.5 72 20-93 136-222 (228)
16 4gvo_A LMO2349 protein; struct 97.7 1.1E-05 3.8E-10 59.2 2.0 71 21-93 150-235 (243)
17 4h5g_A Amino acid ABC superfam 97.7 1.3E-05 4.3E-10 58.9 1.8 74 19-94 148-238 (243)
18 3hv1_A Polar amino acid ABC up 97.6 2.7E-05 9.2E-10 57.4 3.3 74 19-94 159-249 (268)
19 4dz1_A DALS D-alanine transpor 97.6 3.5E-05 1.2E-09 56.8 2.8 60 19-78 168-229 (259)
20 3qax_A Probable ABC transporte 97.6 0.00011 3.7E-09 53.5 5.3 74 20-95 164-255 (268)
21 3h7m_A Sensor protein; histidi 97.5 5.2E-05 1.8E-09 53.9 3.3 73 19-93 142-230 (234)
22 1wdn_A GLNBP, glutamine bindin 97.5 7.7E-05 2.6E-09 52.6 3.7 72 20-93 135-222 (226)
23 2y7i_A STM4351; arginine-bindi 97.4 8.5E-05 2.9E-09 52.8 3.2 57 20-76 138-200 (229)
24 4eq9_A ABC transporter substra 97.4 0.0001 3.5E-09 52.9 3.4 73 22-96 149-238 (246)
25 3kbr_A Cyclohexadienyl dehydra 97.3 5.6E-05 1.9E-09 54.3 1.5 72 20-93 151-237 (239)
26 3tql_A Arginine-binding protei 97.3 7.7E-05 2.6E-09 52.7 2.1 58 19-76 135-200 (227)
27 1lst_A Lysine, arginine, ornit 97.3 0.00014 4.8E-09 52.1 2.9 73 20-94 139-233 (239)
28 2vha_A Periplasmic binding tra 97.3 0.00023 7.9E-09 52.9 4.2 74 19-94 159-249 (287)
29 4i62_A Amino acid ABC transpor 97.2 0.00018 6.1E-09 52.3 3.3 73 19-93 175-264 (269)
30 1xt8_A Putative amino-acid tra 97.2 0.00013 4.3E-09 54.7 2.4 72 20-93 179-265 (292)
31 2yjp_A Putative ABC transporte 97.2 0.0002 6.7E-09 53.9 3.1 72 20-93 190-276 (291)
32 3mpk_A Virulence sensor protei 97.1 0.00088 3E-08 49.5 5.8 59 19-77 164-226 (267)
33 2pvu_A ARTJ; basic amino acid 96.9 0.00097 3.3E-08 49.2 4.4 73 19-93 173-262 (272)
34 2yln_A Putative ABC transporte 96.9 0.00057 2E-08 51.2 3.0 72 20-93 188-277 (283)
35 2iee_A ORF2, probable ABC tran 96.6 0.00072 2.5E-08 50.1 2.1 89 20-111 156-266 (271)
36 2q88_A EHUB, putative ABC tran 95.9 0.0034 1.2E-07 45.4 2.2 70 19-91 150-238 (257)
37 2v25_A Major cell-binding fact 95.7 0.0075 2.6E-07 43.1 3.4 56 19-76 177-233 (259)
38 3n5l_A Binding protein compone 88.3 0.85 2.9E-05 34.9 5.6 56 21-76 154-214 (310)
39 3p7i_A PHND, subunit of alkylp 88.1 1 3.6E-05 34.8 6.0 56 21-76 163-223 (321)
40 2ozz_A Hypothetical protein YH 80.6 1.8 6.3E-05 32.6 4.2 53 20-76 139-200 (231)
41 3ix1_A N-formyl-4-amino-5-amin 69.3 8.2 0.00028 28.3 5.2 56 22-78 42-99 (302)
42 3qsl_A Putative exported prote 65.2 25 0.00086 25.7 7.2 57 22-78 72-131 (346)
43 3ksx_A Nitrate transport prote 64.9 24 0.00083 26.1 7.1 56 22-78 66-124 (324)
44 3v83_A Serotransferrin; iron b 63.2 12 0.0004 32.7 5.6 57 21-78 61-127 (698)
45 3skp_A Serotransferrin; iron b 62.6 19 0.00066 28.6 6.4 56 21-78 34-102 (342)
46 3uif_A Sulfonate ABC transport 61.8 19 0.00063 27.2 6.0 54 24-78 57-112 (348)
47 1h45_A Lactoferrin; metal tran 58.4 18 0.00061 28.5 5.5 57 21-78 40-106 (334)
48 1ryo_A Serotransferrin; iron t 57.6 18 0.00062 28.3 5.4 57 21-78 42-108 (327)
49 3un6_A Hypothetical protein sa 50.2 46 0.0016 24.8 6.5 55 22-78 90-146 (341)
50 3tod_A Lactotransferrin; C-LOB 50.0 31 0.0011 27.3 5.6 36 21-58 33-69 (335)
51 2x26_A Periplasmic aliphatic s 48.7 61 0.0021 23.4 6.8 56 22-78 40-98 (308)
52 3lr1_A Tungstate ABC transport 48.3 31 0.0011 25.6 5.1 57 20-78 39-97 (236)
53 2dvz_A BUGE, putative exported 41.9 64 0.0022 24.6 6.2 31 19-49 173-204 (314)
54 2f5x_A BUGD; periplasmic bindi 41.6 73 0.0025 24.3 6.5 32 19-50 169-201 (312)
55 2d3i_A Ovotransferrin; aluminu 40.8 63 0.0021 28.0 6.5 57 21-78 39-105 (686)
56 3mc2_A Inhibitor of carbonic a 39.6 29 0.001 30.1 4.2 57 21-78 48-114 (687)
57 2qpq_A Protein BUG27; alpha/be 38.8 67 0.0023 24.3 5.8 31 19-49 160-191 (301)
58 1iej_A Ovotransferrin; iron, m 38.4 47 0.0016 26.0 5.0 57 21-78 39-105 (332)
59 1blf_A Lactoferrin; transferri 37.1 56 0.0019 28.3 5.6 57 21-78 39-105 (689)
60 4esw_A Pyrimidine biosynthesis 36.7 84 0.0029 23.5 6.1 56 22-78 46-103 (342)
61 2x7q_A Ca3427, possible thiami 36.2 1.3E+02 0.0043 22.1 7.0 52 26-78 57-113 (321)
62 2d3i_A Ovotransferrin; aluminu 34.5 79 0.0027 27.4 6.1 56 21-78 374-444 (686)
63 1cb6_A Protein (lactoferrin); 34.1 65 0.0022 27.9 5.5 57 21-78 39-105 (691)
64 3l6g_A Betaine ABC transporter 33.4 68 0.0023 23.5 5.0 56 23-78 38-97 (256)
65 3tmg_A Glycine betaine, L-prol 33.2 67 0.0023 23.9 5.0 56 23-78 52-111 (280)
66 3gzg_A Molybdate-binding perip 31.0 62 0.0021 23.6 4.4 56 21-76 56-114 (253)
67 3v83_A Serotransferrin; iron b 30.3 76 0.0026 27.6 5.3 55 22-78 391-459 (698)
68 3muq_A Uncharacterized conserv 29.5 93 0.0032 22.9 5.1 57 20-78 39-97 (237)
69 3ho7_A OXYR; beta-alpha-barrel 28.8 83 0.0028 20.9 4.5 60 19-78 140-200 (232)
70 1snn_A DHBP synthase, 3,4-dihy 28.3 32 0.0011 25.9 2.4 50 22-75 2-51 (227)
71 2qmw_A PDT, prephenate dehydra 28.3 85 0.0029 23.8 4.8 58 19-78 32-99 (267)
72 3r26_A Molybdate-binding perip 28.1 1.6E+02 0.0054 20.8 6.1 55 19-76 151-209 (237)
73 3mc2_A Inhibitor of carbonic a 27.8 82 0.0028 27.4 5.1 40 21-62 371-412 (687)
74 4ab5_A Transcriptional regulat 27.3 1.3E+02 0.0045 19.6 5.8 60 19-78 135-195 (222)
75 1k4i_A 3,4-dihydroxy-2-butanon 26.9 46 0.0016 25.2 3.0 54 21-78 12-65 (233)
76 4ecf_A ABC-type phosphate tran 26.6 1.4E+02 0.0047 21.7 5.7 55 21-78 38-94 (264)
77 1tks_A 3,4-dihydroxy-2-butanon 26.0 49 0.0017 24.5 2.9 54 21-78 5-58 (204)
78 3oxn_A Putative transcriptiona 25.6 93 0.0032 21.1 4.3 59 20-78 146-205 (241)
79 3mio_A DHBP synthase, 3,4-dihy 25.4 51 0.0017 24.4 2.9 23 21-43 4-26 (206)
80 1atg_A MODA, periplasmic molyb 24.9 91 0.0031 20.8 4.1 56 21-78 33-93 (231)
81 2qmx_A Prephenate dehydratase; 23.3 1.6E+02 0.0055 22.5 5.5 58 19-78 30-97 (283)
82 2esn_A Probable transcriptiona 21.8 2E+02 0.0067 20.3 5.6 59 20-78 232-291 (310)
83 1us5_A Putative GLUR0 ligand b 21.7 2.3E+02 0.0077 20.3 6.4 55 23-78 59-124 (314)
84 3mwb_A Prephenate dehydratase; 21.6 1.1E+02 0.0039 23.7 4.4 60 19-78 35-103 (313)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.47 E-value=7.5e-14 Score=119.69 Aligned_cols=95 Identities=48% Similarity=0.832 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHhcCCCccccCHHHHHHHHh--cCCcEEEeehhhhHHHHhcC-CceeEeccccCccceEEEecCCCCCc
Q psy10096 2 IDTYKKMWRYMENKKPSVFVSTYKEGIDRVL--EGNYAFLMESTMLDYIVQRN-CNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 2 ~~~y~~m~~~M~~~~~~~~v~~~~eGv~~vr--~g~~AfI~d~~~l~Y~~~~~-C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+.|++||++|...++.+++++.+||+++++ .|.+||+.|.+.++|+..++ |+|.++|+.|...+|||++|+||||+
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~ 734 (823)
T 3kg2_A 655 IAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLG 734 (823)
T ss_dssp CHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSH
T ss_pred chHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHH
Confidence 4578999999999888889999999999997 45699999999999998776 99999999999999999999999999
Q ss_pred ------------ccccccccccccccc--ccCcC
Q psy10096 79 ------------VGHIACWRWDDYFWS--YNNVH 98 (125)
Q Consensus 79 ------------~g~l~~l~~~~kw~~--~~c~~ 98 (125)
+|.+++|+ ++||. ..|..
T Consensus 735 ~~~~~~il~l~e~G~~~~~~--~~w~~~~~~c~~ 766 (823)
T 3kg2_A 735 TPVNLAVLKLSEQGLLDKLK--NKWWYDKGECGA 766 (823)
T ss_dssp HHHHHHHHHHHHTTHHHHHH--HHHHTTSCSCSS
T ss_pred HHHHHHHHHHHhCCcHHHHH--HhhCcCCCCCCC
Confidence 69999999 99994 57876
No 2
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.26 E-value=4.8e-12 Score=97.25 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc------
Q psy10096 6 KKMWRYMENKKPSVFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL------ 78 (125)
Q Consensus 6 ~~m~~~M~~~~~~~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~------ 78 (125)
..||..|+. ..+++..+++++|++|+ +||+.|.+++.|++++.|+|.++|..|...+||||++++|||+
T Consensus 192 ~~~~~~~~~----~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~a 267 (292)
T 1pb7_A 192 STMYRHMEK----HNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLS 267 (292)
T ss_dssp HHHHHHHTT----TCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEECCEEETTCSSHHHHHHH
T ss_pred HHHHHHHHh----hcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCceEEEEeCCCHHHHHHHHH
Confidence 445655543 34789999999999999 9999999999999988999999999999999999999999988
Q ss_pred ------ccccccccccccccc-ccCc
Q psy10096 79 ------VGHIACWRWDDYFWS-YNNV 97 (125)
Q Consensus 79 ------~g~l~~l~~~~kw~~-~~c~ 97 (125)
+|.++.|. +|||. ..|.
T Consensus 268 l~~l~~~G~~~~l~--~kw~~~~~c~ 291 (292)
T 1pb7_A 268 ILKSHENGFMEDLD--KTWVRYQECD 291 (292)
T ss_dssp HHHHHHSSHHHHHH--HHHTSSSCCC
T ss_pred HHHHHhCCCHHHHH--HhhCCCCCCC
Confidence 58999999 99996 4674
No 3
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.15 E-value=2.2e-11 Score=90.15 Aligned_cols=93 Identities=51% Similarity=0.953 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhcCCCccccCHHHHHHHHhcCCcEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc----
Q psy10096 3 DTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL---- 78 (125)
Q Consensus 3 ~~y~~m~~~M~~~~~~~~v~~~~eGv~~vr~g~~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~---- 78 (125)
+.|..+|..|.....-+.+++..+++++|.+|++|++.|.+++.|+++++|++.+++..+....|+||+++++||.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in 232 (259)
T 3g3k_A 153 STYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKIT 232 (259)
T ss_dssp HHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSSEEEEEEHHHHHHHHHHCTTEEEESSCSSCEEECCEEETTCTHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCCeEEEechHHHHHHhcCCceEEEecccceeeeEEEEECCCCccHHHHH
Confidence 4567778877654444567899999999999999999999999999988999999999999999999999999977
Q ss_pred --------cccccccccccccccc-cCc
Q psy10096 79 --------VGHIACWRWDDYFWSY-NNV 97 (125)
Q Consensus 79 --------~g~l~~l~~~~kw~~~-~c~ 97 (125)
+|.++.|. ++|+.. +|.
T Consensus 233 ~~l~~l~~~G~~~~i~--~kw~~~~~c~ 258 (259)
T 3g3k_A 233 LAILKLQEQGKLHMMK--EKWWRGNGCP 258 (259)
T ss_dssp HHHHHHHHTC-CHHHH--HHHHCC--CC
T ss_pred HHHHHHHhcChHHHHH--HhhcCCCCCC
Confidence 58999999 999974 675
No 4
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.10 E-value=9.1e-11 Score=90.23 Aligned_cols=105 Identities=45% Similarity=0.831 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCCCccccCHHHHHHHHhcCCcEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc----
Q psy10096 3 DTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL---- 78 (125)
Q Consensus 3 ~~y~~m~~~M~~~~~~~~v~~~~eGv~~vr~g~~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~---- 78 (125)
+.|..+|..|.....-..+++..+++++|.+|++|++.+.+++.|++.+.|+|.+++..|...+|+||+++++||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in 266 (312)
T 1yae_A 187 STYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKIT 266 (312)
T ss_dssp HHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHTTCTTEEEESSCSSCEEEEEEEETTCSSHHHHH
T ss_pred chHHHHHHHHHhcCCCcccCCHHHHHHHHHcCCcEEEeccHHHHHHHhcCCCEEEecccccccceEEEEeCCCCcHHHHH
Confidence 3466777776532122347899999999999999999999999999988899999999999999999999999987
Q ss_pred --------cccccccccccccccc-cCcCCCCccccchhh
Q psy10096 79 --------VGHIACWRWDDYFWSY-NNVHSSGHWRDMEEI 109 (125)
Q Consensus 79 --------~g~l~~l~~~~kw~~~-~c~~~~~~~~~~~~~ 109 (125)
+|.++.|. ++|+.. .|..+...-...+..
T Consensus 267 ~~l~~l~~~G~~~~i~--~kw~~~~~c~~~~~~~~~~~~~ 304 (312)
T 1yae_A 267 IAILQLQEEGKLHMMK--EKWWRGNGCPEEESKEASALGV 304 (312)
T ss_dssp HHHHHHHHHTHHHHHH--HHHHCCSCC-------------
T ss_pred HHHHHHHHcCCHHHHH--hhhcCCCCCCCCCCccchhhhh
Confidence 58899999 999974 798755554555554
No 5
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.05 E-value=1.3e-10 Score=89.00 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=65.7
Q ss_pred ccCHHHHHHHHhc--CC-cEEEeehhhhHHHHhc--CCceeEeccccCccceEEEecCCCCCc------------ccccc
Q psy10096 21 VSTYKEGIDRVLE--GN-YAFLMESTMLDYIVQR--NCNLTQIGGLLDSKGYGIATPMGHSGL------------VGHIA 83 (125)
Q Consensus 21 v~~~~eGv~~vr~--g~-~AfI~d~~~l~Y~~~~--~C~L~~vg~~f~~~gYgialp~gSpl~------------~g~l~ 83 (125)
+++..+++++|++ |+ +|||.|.+++.|++++ .|++.+++..|...+|+||+++++||+ +|.++
T Consensus 201 ~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~ 280 (294)
T 2rc8_A 201 VPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMD 280 (294)
T ss_dssp BSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCCHH
Confidence 6899999999999 88 9999999999999965 499999999999999999999999988 58999
Q ss_pred cccccccccc-ccCc
Q psy10096 84 CWRWDDYFWS-YNNV 97 (125)
Q Consensus 84 ~l~~~~kw~~-~~c~ 97 (125)
.|. ++||. .+|.
T Consensus 281 ~l~--~kw~~~~~c~ 293 (294)
T 2rc8_A 281 VLH--DKWYKVVPCG 293 (294)
T ss_dssp HHH--HHHCCC----
T ss_pred HHH--HhhcCCCCCC
Confidence 999 99997 4675
No 6
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=98.98 E-value=5.3e-10 Score=85.17 Aligned_cols=74 Identities=23% Similarity=0.420 Sum_probs=67.2
Q ss_pred cCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEec--cccCccceEEEecCCCCCc------------cccccc
Q psy10096 22 STYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIG--GLLDSKGYGIATPMGHSGL------------VGHIAC 84 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg--~~f~~~gYgialp~gSpl~------------~g~l~~ 84 (125)
++.++++++|.+|+ +|++.|.+++.|++++. |++.++| ..|...+||||++++|||+ +|.++.
T Consensus 193 ~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~ 272 (284)
T 2a5s_A 193 RGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEE 272 (284)
T ss_dssp SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHH
Confidence 78999999999999 89999999999999764 9999986 6888999999999999988 488899
Q ss_pred cccccccccccCc
Q psy10096 85 WRWDDYFWSYNNV 97 (125)
Q Consensus 85 l~~~~kw~~~~c~ 97 (125)
|. ++|+...|.
T Consensus 273 i~--~kw~~~~c~ 283 (284)
T 2a5s_A 273 LE--TLWLTGICH 283 (284)
T ss_dssp HH--HHHTCCCCC
T ss_pred HH--HHhhhccCC
Confidence 99 999998885
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.85 E-value=3e-09 Score=78.34 Aligned_cols=93 Identities=27% Similarity=0.600 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcC-CCccccCHHHHHHHHhcCCcEEEeehhhhHHHHhc--CCceeEeccccCccceEEEecCCCCCc-
Q psy10096 3 DTYKKMWRYMENKK-PSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQR--NCNLTQIGGLLDSKGYGIATPMGHSGL- 78 (125)
Q Consensus 3 ~~y~~m~~~M~~~~-~~~~v~~~~eGv~~vr~g~~AfI~d~~~l~Y~~~~--~C~L~~vg~~f~~~gYgialp~gSpl~- 78 (125)
+.|+.+|..|...+ ....+++..+++++|.+|+.|++.|.+++.|++.+ .|++.+++..+....|+||+++++||.
T Consensus 155 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ 234 (265)
T 2v3u_A 155 SMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRD 234 (265)
T ss_dssp THHHHHHHHHCC-----CCBSSHHHHHHHHHHSSCEEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHH
T ss_pred HHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCEEEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHH
Confidence 34667777775432 22457899999999999998999999999999854 399999999999999999999999977
Q ss_pred -----------ccccccccccccccc--ccCc
Q psy10096 79 -----------VGHIACWRWDDYFWS--YNNV 97 (125)
Q Consensus 79 -----------~g~l~~l~~~~kw~~--~~c~ 97 (125)
+|.++.|. ++|+. ..|.
T Consensus 235 ~in~~l~~l~~~g~~~~i~--~kw~~~~~~c~ 264 (265)
T 2v3u_A 235 VFSQRILELQQSGDMDILK--HKWWPKNGQCD 264 (265)
T ss_dssp HHHHHHHHHHHHTHHHHHH--HHHCCCCCC--
T ss_pred HHHHHHHHHhhCChHHHHH--hhcCCCcCcCC
Confidence 48888888 99985 3563
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.81 E-value=9.1e-09 Score=76.11 Aligned_cols=92 Identities=49% Similarity=0.849 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHH--hcCCcEEEeehhhhHHHHhcC-CceeEeccccCccceEEEecCCCCCc--
Q psy10096 4 TYKKMWRYMENKKPSVFVSTYKEGIDRV--LEGNYAFLMESTMLDYIVQRN-CNLTQIGGLLDSKGYGIATPMGHSGL-- 78 (125)
Q Consensus 4 ~y~~m~~~M~~~~~~~~v~~~~eGv~~v--r~g~~AfI~d~~~l~Y~~~~~-C~L~~vg~~f~~~gYgialp~gSpl~-- 78 (125)
.|+.+|..+.....-+.+.+..+++++| ..|++|++.+.+++.|++.+. |++.+++..+....|+||++++++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 233 (263)
T 1mqi_A 154 VFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNA 233 (263)
T ss_dssp HHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHH
T ss_pred hHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCcEEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHH
Confidence 4666777775544456688999999999 888899999999999998664 89999999999999999999999988
Q ss_pred ----------ccccccccccccccc--ccCc
Q psy10096 79 ----------VGHIACWRWDDYFWS--YNNV 97 (125)
Q Consensus 79 ----------~g~l~~l~~~~kw~~--~~c~ 97 (125)
+|.++.|. ++|+. ..|-
T Consensus 234 in~~l~~l~~~g~~~~i~--~k~~~~~~~C~ 262 (263)
T 1mqi_A 234 VNLAVLKLNEQGLLDKLK--NKWWYDKGECG 262 (263)
T ss_dssp HHHHHHHHHHTTHHHHHH--HHHHTTTCSCC
T ss_pred HHHHHHHHHhcccHHHHH--HHHcCCCCCCC
Confidence 58888888 99985 3563
No 9
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=97.99 E-value=7.4e-06 Score=58.40 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=62.0
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccceEEEecCCCCCc------------ccccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKGYGIATPMGHSGL------------VGHIA 83 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~gYgialp~gSpl~------------~g~l~ 83 (125)
..+.+..++++.|.+|+ +|++.+.+.+.|++.+. ..+.+++..+....|+|++++++||. +|.++
T Consensus 139 ~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~ 218 (233)
T 1ii5_A 139 RETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIA 218 (233)
T ss_dssp EEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHH
T ss_pred EEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcHH
Confidence 34678999999999999 89999999999998665 57888988888899999999999976 46777
Q ss_pred cccccccccc
Q psy10096 84 CWRWDDYFWS 93 (125)
Q Consensus 84 ~l~~~~kw~~ 93 (125)
.+. ++|+.
T Consensus 219 ~i~--~k~~~ 226 (233)
T 1ii5_A 219 EFT--ERWLG 226 (233)
T ss_dssp HHH--HHHHC
T ss_pred HHH--HHHcC
Confidence 777 77764
No 10
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=97.96 E-value=5.1e-06 Score=60.66 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=63.3
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccceEEEecCCCCCc------------ccccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKGYGIATPMGHSGL------------VGHIA 83 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~gYgialp~gSpl~------------~g~l~ 83 (125)
..+++..+++++|.+|+ +|++.+.+.+.|++.+. ..+.+++..+....|+|++++++||. +|.++
T Consensus 155 ~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~ 234 (249)
T 4f3p_A 155 RQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYA 234 (249)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHH
T ss_pred EEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHH
Confidence 34678999999999999 99999999999999764 56889999999999999999999965 47777
Q ss_pred cccccccccc
Q psy10096 84 CWRWDDYFWS 93 (125)
Q Consensus 84 ~l~~~~kw~~ 93 (125)
.+. ++|+.
T Consensus 235 ~i~--~k~~~ 242 (249)
T 4f3p_A 235 KIY--KKWFG 242 (249)
T ss_dssp HHH--HHHHS
T ss_pred HHH--HHHcC
Confidence 787 88875
No 11
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=97.87 E-value=1.3e-05 Score=58.23 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=63.6
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC-CceeEecc-ccCccceEEEecCCCC-Cc------------cccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN-CNLTQIGG-LLDSKGYGIATPMGHS-GL------------VGHI 82 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~-C~L~~vg~-~f~~~gYgialp~gSp-l~------------~g~l 82 (125)
..+++..+++++|.+|+ +|++.+.+.+.|++.+. .++.+++. .+....++|++++++| |. +|.+
T Consensus 129 ~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~ 208 (232)
T 3i6v_A 129 VEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTL 208 (232)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHH
T ss_pred EEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChH
Confidence 34789999999999999 99999999999999775 88888886 4778899999999986 33 5889
Q ss_pred cccccccccccc
Q psy10096 83 ACWRWDDYFWSY 94 (125)
Q Consensus 83 ~~l~~~~kw~~~ 94 (125)
+.+. ++|+..
T Consensus 209 ~~i~--~k~~~~ 218 (232)
T 3i6v_A 209 NTMI--KKWFGE 218 (232)
T ss_dssp HHHH--HHHHCT
T ss_pred HHHH--HHHcCC
Confidence 9999 999974
No 12
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=97.85 E-value=8.4e-06 Score=59.20 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=63.7
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhc--CCceeEeccccCccceEEEecCCCC-Cc------------cccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQR--NCNLTQIGGLLDSKGYGIATPMGHS-GL------------VGHI 82 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~--~C~L~~vg~~f~~~gYgialp~gSp-l~------------~g~l 82 (125)
+.+++..+++++|.+|+ +|++.+.+.+.|++.+ ...+..++..+....++|++++++| |. +|.+
T Consensus 140 ~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~ 219 (245)
T 3k4u_A 140 KTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSY 219 (245)
T ss_dssp EEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHH
T ss_pred EEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHH
Confidence 45678999999999999 8999999999998755 3788889999999999999999998 43 5888
Q ss_pred cccccccccccc
Q psy10096 83 ACWRWDDYFWSY 94 (125)
Q Consensus 83 ~~l~~~~kw~~~ 94 (125)
+.+. ++|+..
T Consensus 220 ~~i~--~k~~~~ 229 (245)
T 3k4u_A 220 DELY--ERWFVD 229 (245)
T ss_dssp HHHH--HHHHTC
T ss_pred HHHH--HHhcCc
Confidence 8888 899864
No 13
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=97.82 E-value=2.5e-05 Score=56.31 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=64.1
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccc----eEEEecCCCCC-c------------cc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKG----YGIATPMGHSG-L------------VG 80 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~g----Ygialp~gSpl-~------------~g 80 (125)
..+++..+++++|.+|+ +|++.+.+.+.|++.+...+.+++..+.... ++|++++++|- . +|
T Consensus 142 ~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g 221 (242)
T 3del_B 142 RSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEG 221 (242)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcC
Confidence 34688999999999999 9999999999999988777999988888888 99999999873 3 58
Q ss_pred cccccccccccccc
Q psy10096 81 HIACWRWDDYFWSY 94 (125)
Q Consensus 81 ~l~~l~~~~kw~~~ 94 (125)
.++.|. +||...
T Consensus 222 ~~~~i~--~k~~~~ 233 (242)
T 3del_B 222 VLAELE--QKWGLN 233 (242)
T ss_dssp HHHHHH--HHTTGG
T ss_pred CHHHHH--HHHCCC
Confidence 888888 888864
No 14
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=97.76 E-value=8.4e-06 Score=58.92 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=62.1
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCC--------ceeEecccc-CccceEEEecCCCCCc----------
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNC--------NLTQIGGLL-DSKGYGIATPMGHSGL---------- 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C--------~L~~vg~~f-~~~gYgialp~gSpl~---------- 78 (125)
..+++..++++.|.+|+ +|++.+.+.+.|++.+.. ++.+++..+ ....++|++++++|-.
T Consensus 135 ~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 135 IFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLE 214 (237)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHHH
Confidence 44678999999999999 999999999999997744 899999888 8999999999996533
Q ss_pred ---cccccccccccccccc
Q psy10096 79 ---VGHIACWRWDDYFWSY 94 (125)
Q Consensus 79 ---~g~l~~l~~~~kw~~~ 94 (125)
+|.++.|. ++|...
T Consensus 215 l~~~G~~~~i~--~k~~~~ 231 (237)
T 3kzg_A 215 MEADGTYLRLY--SEYFEG 231 (237)
T ss_dssp HHHSSHHHHHH--HHHC--
T ss_pred HHHCCcHHHHH--HHHhCc
Confidence 58888888 888754
No 15
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=97.76 E-value=1.7e-05 Score=56.11 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=60.9
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccceEEEecCCCCCc------------cccccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKGYGIATPMGHSGL------------VGHIAC 84 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~gYgialp~gSpl~------------~g~l~~ 84 (125)
.+.+..++++.|.+|+ +|++.+.+.+.|++.+. +.+.+++..+....++|+++++++|. +|.++.
T Consensus 136 ~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~ 215 (228)
T 2pyy_A 136 EVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQS 215 (228)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTTHHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHH
Confidence 4678999999999999 89999999999988654 68888888888889999999999887 467777
Q ss_pred ccccccccc
Q psy10096 85 WRWDDYFWS 93 (125)
Q Consensus 85 l~~~~kw~~ 93 (125)
+. ++|+.
T Consensus 216 i~--~k~~~ 222 (228)
T 2pyy_A 216 LY--DKWFD 222 (228)
T ss_dssp HH--HHHHC
T ss_pred HH--HHHcC
Confidence 77 77764
No 16
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=97.71 E-value=1.1e-05 Score=59.24 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC-CceeEeccccCccceEEEecCCCC-Cc------------ccccccc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN-CNLTQIGGLLDSKGYGIATPMGHS-GL------------VGHIACW 85 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~-C~L~~vg~~f~~~gYgialp~gSp-l~------------~g~l~~l 85 (125)
..+..++++.|..|+ +|++.+.+++.|+.++. ..+.+++..+....++||+++++| |. +|.++.|
T Consensus 150 ~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i 229 (243)
T 4gvo_A 150 GQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKL 229 (243)
T ss_dssp CSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHH
Confidence 357889999999999 99999999999988664 788999999999999999999987 33 5788888
Q ss_pred cccccccc
Q psy10096 86 RWDDYFWS 93 (125)
Q Consensus 86 ~~~~kw~~ 93 (125)
. +||+.
T Consensus 230 ~--~kw~g 235 (243)
T 4gvo_A 230 S--EKWLG 235 (243)
T ss_dssp H--HHHHC
T ss_pred H--HHHCC
Confidence 8 88874
No 17
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=97.68 E-value=1.3e-05 Score=58.95 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=57.8
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCc--eeEe-ccccCccceEEEecCCCC-Cc------------ccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCN--LTQI-GGLLDSKGYGIATPMGHS-GL------------VGH 81 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~--L~~v-g~~f~~~gYgialp~gSp-l~------------~g~ 81 (125)
+.+++..++++.|.+|+ +|++.|.+++.|++.+.-. +..+ ...+....|+||+++++| |. +|.
T Consensus 148 ~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~ 227 (243)
T 4h5g_A 148 TSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEGT 227 (243)
T ss_dssp EEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTH
T ss_pred EEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCH
Confidence 34789999999999999 8999999999888866533 3333 345666789999999997 43 588
Q ss_pred ccccccccccccc
Q psy10096 82 IACWRWDDYFWSY 94 (125)
Q Consensus 82 l~~l~~~~kw~~~ 94 (125)
++.|- +||+..
T Consensus 228 ~~~i~--~Kw~~~ 238 (243)
T 4h5g_A 228 YQSYL--EKAASL 238 (243)
T ss_dssp HHHHH--HHHTTS
T ss_pred HHHHH--HHhcCC
Confidence 88888 888764
No 18
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=97.65 E-value=2.7e-05 Score=57.36 Aligned_cols=74 Identities=9% Similarity=0.214 Sum_probs=64.3
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC---CceeEeccccCccceEEEecCCCC-Cc------------ccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN---CNLTQIGGLLDSKGYGIATPMGHS-GL------------VGH 81 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~---C~L~~vg~~f~~~gYgialp~gSp-l~------------~g~ 81 (125)
+.+++..+++++|.+|+ +|++.+.+.+.|++.+. +.+.+++..+....++|++++++| |. +|.
T Consensus 159 ~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~ 238 (268)
T 3hv1_A 159 VQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGE 238 (268)
T ss_dssp EEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTH
T ss_pred EEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCH
Confidence 34678999999999999 99999999999999653 789999999999999999999986 33 588
Q ss_pred ccccccccccccc
Q psy10096 82 IACWRWDDYFWSY 94 (125)
Q Consensus 82 l~~l~~~~kw~~~ 94 (125)
++.+. ++|+..
T Consensus 239 ~~~i~--~k~~~~ 249 (268)
T 3hv1_A 239 FQKIS--NKWFGE 249 (268)
T ss_dssp HHHHH--HHHHSS
T ss_pred HHHHH--HHhcCC
Confidence 88899 999864
No 19
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=97.56 E-value=3.5e-05 Score=56.83 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=51.5
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhc-CCceeEeccccCccceEEEecCCCCCc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQR-NCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~-~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
..+++..++++.|.+|+ +|++.+.+++.|+..+ ..++...+..+....|+||++++++|.
T Consensus 168 ~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 229 (259)
T 4dz1_A 168 KLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVR 229 (259)
T ss_dssp EEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHH
T ss_pred EecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHH
Confidence 34678999999999999 9999999999888755 477887777777899999999999766
No 20
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=97.55 E-value=0.00011 Score=53.46 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=62.7
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccc----eEEEecCCCCCc-------------ccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKG----YGIATPMGHSGL-------------VGH 81 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~g----Ygialp~gSpl~-------------~g~ 81 (125)
.+++..++++.|.+|+ +|++.+.+.+.|+..+.-++.+++..+.... ++|++++++|-. +|.
T Consensus 164 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~ 243 (268)
T 3qax_A 164 SFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGV 243 (268)
T ss_dssp EESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCc
Confidence 4678999999999999 9999999999999987666888888888888 999999998733 477
Q ss_pred cccccccccccccc
Q psy10096 82 IACWRWDDYFWSYN 95 (125)
Q Consensus 82 l~~l~~~~kw~~~~ 95 (125)
++.+. ++|....
T Consensus 244 ~~~i~--~k~~~~~ 255 (268)
T 3qax_A 244 IQSLT--KKWQLSE 255 (268)
T ss_dssp HHHHH--HHTTCSC
T ss_pred HHHHH--HHHcCCc
Confidence 88888 8887543
No 21
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=97.53 E-value=5.2e-05 Score=53.95 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=60.9
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccceEEEecCCCCCc-------------cccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKGYGIATPMGHSGL-------------VGHI 82 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~gYgialp~gSpl~-------------~g~l 82 (125)
+.+++..++++.|.+|+ +|++.+.+.+.|++.+. .++..++..+....++|++++++|-. +|.+
T Consensus 142 ~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~ 221 (234)
T 3h7m_A 142 VLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQY 221 (234)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHH
T ss_pred EEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcH
Confidence 34678999999999999 99999999999998653 67888888888999999999998733 4677
Q ss_pred ccccccccccc
Q psy10096 83 ACWRWDDYFWS 93 (125)
Q Consensus 83 ~~l~~~~kw~~ 93 (125)
+.+. ++|+.
T Consensus 222 ~~i~--~k~~~ 230 (234)
T 3h7m_A 222 EAIR--AKWLG 230 (234)
T ss_dssp HHHH--HHSTT
T ss_pred HHHH--HHhcc
Confidence 7777 77764
No 22
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=97.49 E-value=7.7e-05 Score=52.63 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=59.3
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccceEEEecCCCC-Cc------------ccccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKGYGIATPMGHS-GL------------VGHIA 83 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~gYgialp~gSp-l~------------~g~l~ 83 (125)
.+++..++++.|.+|+ +|++.+.+.+.|++.+. ..+.+++..+....++|++++++| +. +|.++
T Consensus 135 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~ 214 (226)
T 1wdn_A 135 QFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYN 214 (226)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHH
T ss_pred EeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHH
Confidence 4678999999999999 99999999999988664 678888888888899999999984 33 46666
Q ss_pred cccccccccc
Q psy10096 84 CWRWDDYFWS 93 (125)
Q Consensus 84 ~l~~~~kw~~ 93 (125)
.+. ++|+.
T Consensus 215 ~i~--~k~~~ 222 (226)
T 1wdn_A 215 EIY--KKWFG 222 (226)
T ss_dssp HHH--HHHHS
T ss_pred HHH--HHHcC
Confidence 666 67764
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=97.41 E-value=8.5e-05 Score=52.75 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=48.2
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCc-----cceEEEecCCCC
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDS-----KGYGIATPMGHS 76 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~-----~gYgialp~gSp 76 (125)
.+.+..++++.|.+|+ +|++.+.+.+.|++.+.-++.+++..+.. ..++|++++++|
T Consensus 138 ~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (229)
T 2y7i_A 138 AYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDND 200 (229)
T ss_dssp EESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTCH
T ss_pred ecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCCH
Confidence 4678999999999999 99999999999998765588888866533 488999999987
No 24
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=97.39 E-value=0.0001 Score=52.88 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=60.8
Q ss_pred cCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccc-eEEEecCCCCCc-------------cccccc
Q psy10096 22 STYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKG-YGIATPMGHSGL-------------VGHIAC 84 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~g-Ygialp~gSpl~-------------~g~l~~ 84 (125)
.+..++++.|.+|+ +|++.+.+.+.|++++. .++.+++..+.... ++|++++++|-. +|.++.
T Consensus 149 ~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~ 228 (246)
T 4eq9_A 149 ADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEK 228 (246)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHH
Confidence 38899999999999 99999999999999653 56899888777665 899999999733 588888
Q ss_pred cccccccccccC
Q psy10096 85 WRWDDYFWSYNN 96 (125)
Q Consensus 85 l~~~~kw~~~~c 96 (125)
+. ++|+....
T Consensus 229 i~--~k~~~~~~ 238 (246)
T 4eq9_A 229 LS--KQFFGDTY 238 (246)
T ss_dssp HH--HHHHSSCC
T ss_pred HH--HHhcCCCC
Confidence 88 89986543
No 25
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=97.35 E-value=5.6e-05 Score=54.33 Aligned_cols=72 Identities=7% Similarity=0.038 Sum_probs=55.5
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEec--cccCccceEEEecCCCCCc------------cccccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIG--GLLDSKGYGIATPMGHSGL------------VGHIAC 84 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg--~~f~~~gYgialp~gSpl~------------~g~l~~ 84 (125)
.+++..++++.|.+|+ +|++.+.+.+.|++.+..++.++. .++....++|+++++..|. +|.++.
T Consensus 151 ~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~l~~~g~~~~ 230 (239)
T 3kbr_A 151 VHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQ 230 (239)
T ss_dssp ECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcCCHHHHHHHHHHHHHHHHCCcHHH
Confidence 4678899999999999 999999999999998765666665 5688899999999933343 366666
Q ss_pred ccccccccc
Q psy10096 85 WRWDDYFWS 93 (125)
Q Consensus 85 l~~~~kw~~ 93 (125)
+. ++|+.
T Consensus 231 i~--~k~~~ 237 (239)
T 3kbr_A 231 RM--EHWLE 237 (239)
T ss_dssp HH--HHHC-
T ss_pred HH--HHHhc
Confidence 66 66653
No 26
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=97.33 E-value=7.7e-05 Score=52.66 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=48.1
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccCccc-----eEEEecCCCC
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLDSKG-----YGIATPMGHS 76 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~~~g-----Ygialp~gSp 76 (125)
..+.+..+++++|.+|+ +|++.+.+.+.|++.+. .++.+++..+.... ++|++++++|
T Consensus 135 ~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T 3tql_A 135 QRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQ 200 (227)
T ss_dssp EEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCH
T ss_pred EEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCH
Confidence 45789999999999999 99999999999998665 44888876665544 4999999987
No 27
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=97.27 E-value=0.00014 Score=52.08 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=56.9
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHH-HHhc--CCceeEeccccCcc-----ceEEEecCCCC-Cc-----------
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDY-IVQR--NCNLTQIGGLLDSK-----GYGIATPMGHS-GL----------- 78 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y-~~~~--~C~L~~vg~~f~~~-----gYgialp~gSp-l~----------- 78 (125)
.+++..++++.|.+|+ +|++.+.+.+.+ +..+ ..++.+++..+... .++|++++++| |.
T Consensus 139 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~ 218 (239)
T 1lst_A 139 AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELR 218 (239)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999 999999998864 4433 36788888766543 78999999987 44
Q ss_pred -cccccccccccccccc
Q psy10096 79 -VGHIACWRWDDYFWSY 94 (125)
Q Consensus 79 -~g~l~~l~~~~kw~~~ 94 (125)
+|.++.+. ++|...
T Consensus 219 ~~G~~~~i~--~k~~~~ 233 (239)
T 1lst_A 219 QDGTYDKMA--KKYFDF 233 (239)
T ss_dssp HTTHHHHHH--HTTCSS
T ss_pred HCccHHHHH--HHHcCC
Confidence 47788888 888753
No 28
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=97.26 E-value=0.00023 Score=52.87 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=62.7
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC---CceeEeccccCccceEEEecCCCC-Cc------------ccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN---CNLTQIGGLLDSKGYGIATPMGHS-GL------------VGH 81 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~---C~L~~vg~~f~~~gYgialp~gSp-l~------------~g~ 81 (125)
+.+.+..++++.|.+|+ +|++.+.+.+.|++.+. ..+.+++..+....++|++++++| +. +|.
T Consensus 159 ~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~ 238 (287)
T 2vha_A 159 ISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGE 238 (287)
T ss_dssp EEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTH
T ss_pred EEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCch
Confidence 34678999999999999 99999999999988652 678999988888999999999987 33 588
Q ss_pred ccccccccccccc
Q psy10096 82 IACWRWDDYFWSY 94 (125)
Q Consensus 82 l~~l~~~~kw~~~ 94 (125)
++.+. .+|...
T Consensus 239 ~~~i~--~k~~~~ 249 (287)
T 2vha_A 239 AEKWF--DKWFKN 249 (287)
T ss_dssp HHHHH--HHHHHS
T ss_pred HHHHH--HHHcCC
Confidence 88888 899854
No 29
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=97.24 E-value=0.00018 Score=52.28 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=58.2
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccC---ccceEEEecCCCCCc-------------ccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLD---SKGYGIATPMGHSGL-------------VGH 81 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~---~~gYgialp~gSpl~-------------~g~ 81 (125)
..+++..++++.|.+|+ +|++.+.+.+.|+..+...+..+...+. ...++|++++++|-. +|.
T Consensus 175 ~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~ 254 (269)
T 4i62_A 175 VSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGE 254 (269)
T ss_dssp EEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTH
T ss_pred EecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCCh
Confidence 44678999999999999 9999999999999977667766665544 778999999998733 466
Q ss_pred cccccccccccc
Q psy10096 82 IACWRWDDYFWS 93 (125)
Q Consensus 82 l~~l~~~~kw~~ 93 (125)
++.+. ++|+.
T Consensus 255 ~~~i~--~k~~~ 264 (269)
T 4i62_A 255 LDKLI--EDAFK 264 (269)
T ss_dssp HHHHH--HHHHH
T ss_pred HHHHH--HHHhC
Confidence 77777 77764
No 30
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=97.22 E-value=0.00013 Score=54.68 Aligned_cols=72 Identities=14% Similarity=-0.026 Sum_probs=61.0
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccce-EEEecCCCC-Cc------------cccccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGY-GIATPMGHS-GL------------VGHIAC 84 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gY-gialp~gSp-l~------------~g~l~~ 84 (125)
.+.+..++++.|.+|+ +|++.+.+.+.|+..+.-++.+++..+....| +|++++++| +. +|.++.
T Consensus 179 ~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~ 258 (292)
T 1xt8_A 179 KYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHK 258 (292)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHH
T ss_pred EcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 4678899999999999 99999999999999765568888888888899 999999987 33 477888
Q ss_pred ccccccccc
Q psy10096 85 WRWDDYFWS 93 (125)
Q Consensus 85 l~~~~kw~~ 93 (125)
+. ++|+.
T Consensus 259 i~--~k~~~ 265 (292)
T 1xt8_A 259 AY--DETLK 265 (292)
T ss_dssp HH--HHHTG
T ss_pred HH--HHhcC
Confidence 88 78775
No 31
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=97.19 E-value=0.0002 Score=53.93 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=60.4
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccce-EEEecCCCC-Cc------------cccccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGY-GIATPMGHS-GL------------VGHIAC 84 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gY-gialp~gSp-l~------------~g~l~~ 84 (125)
.+.+..++++.|.+|+ +|++.+.+.+.|+..+.-++.+++..+....| +|++++++| |. +|.++.
T Consensus 190 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~ 269 (291)
T 2yjp_A 190 KFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKA 269 (291)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred EeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 4578999999999999 99999999999998766568888888888999 999999987 33 467777
Q ss_pred ccccccccc
Q psy10096 85 WRWDDYFWS 93 (125)
Q Consensus 85 l~~~~kw~~ 93 (125)
+. ++|+.
T Consensus 270 i~--~k~~~ 276 (291)
T 2yjp_A 270 AY--EKTLL 276 (291)
T ss_dssp HH--HHHTH
T ss_pred HH--HHhcc
Confidence 77 77764
No 32
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=97.09 E-value=0.00088 Score=49.47 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=50.2
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhc--CCceeEecccc-CccceEEEecCCCCC
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQR--NCNLTQIGGLL-DSKGYGIATPMGHSG 77 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~--~C~L~~vg~~f-~~~gYgialp~gSpl 77 (125)
+.+++..+++++|.+|+ +|++.+.+++.|++++ ..++.+++... .+..++|++++++|-
T Consensus 164 ~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~ 226 (267)
T 3mpk_A 164 VTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTE 226 (267)
T ss_dssp EEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHH
T ss_pred EEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHH
Confidence 34688999999999999 9999999999999976 47788887643 578899999999883
No 33
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=96.88 E-value=0.00097 Score=49.18 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccc--cCccceEEEecCCCCCc------------ccc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGL--LDSKGYGIATPMGHSGL------------VGH 81 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~--f~~~gYgialp~gSpl~------------~g~ 81 (125)
..+.+..++++.|.+|+ +|++.+.+.+.|++.+. .++.+++.. |....++|+++++..+. +|.
T Consensus 173 ~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~ 252 (272)
T 2pvu_A 173 KKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGK 252 (272)
T ss_dssp EEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTH
T ss_pred EEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCCh
Confidence 34678999999999999 99999999999988664 358888865 47788999999994454 467
Q ss_pred cccccccccccc
Q psy10096 82 IACWRWDDYFWS 93 (125)
Q Consensus 82 l~~l~~~~kw~~ 93 (125)
++.+. ++|..
T Consensus 253 ~~~i~--~k~~~ 262 (272)
T 2pvu_A 253 YTEIY--KKWFG 262 (272)
T ss_dssp HHHHH--HHHHS
T ss_pred HHHHH--HHHcC
Confidence 77777 77764
No 34
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=96.86 E-value=0.00057 Score=51.23 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=57.9
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEec-cccC-ccceEEEecCCCCC-c------------ccc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIG-GLLD-SKGYGIATPMGHSG-L------------VGH 81 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg-~~f~-~~gYgialp~gSpl-~------------~g~ 81 (125)
.+.+..+.++.|.+|+ +|++.+.+.+.|++.+. .++.+++ ..+. ...|+|++++++|- . +|.
T Consensus 188 ~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~ 267 (283)
T 2yln_A 188 PVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGT 267 (283)
T ss_dssp ECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTH
T ss_pred EeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCc
Confidence 3568899999999999 99999999999988654 3588888 8888 88999999999863 3 366
Q ss_pred cccccccccccc
Q psy10096 82 IACWRWDDYFWS 93 (125)
Q Consensus 82 l~~l~~~~kw~~ 93 (125)
++.+. ++|..
T Consensus 268 ~~~i~--~k~~~ 277 (283)
T 2yln_A 268 LKKLG--EQFFG 277 (283)
T ss_dssp HHHHH--HHHHS
T ss_pred HHHHH--HHHcC
Confidence 66666 66653
No 35
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=96.63 E-value=0.00072 Score=50.05 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=64.5
Q ss_pred cccCHHHH--HHHHhcCC-cEEEeehhhhHHHHh-c--CCceeEe-ccccCccceEEEecCCCC-Cc------------c
Q psy10096 20 FVSTYKEG--IDRVLEGN-YAFLMESTMLDYIVQ-R--NCNLTQI-GGLLDSKGYGIATPMGHS-GL------------V 79 (125)
Q Consensus 20 ~v~~~~eG--v~~vr~g~-~AfI~d~~~l~Y~~~-~--~C~L~~v-g~~f~~~gYgialp~gSp-l~------------~ 79 (125)
.+++..++ ++.|.+|+ + ++.+.+.+.++.. + ...+.++ +..+....++|++++++| |. +
T Consensus 156 ~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~ 234 (271)
T 2iee_A 156 IYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKD 234 (271)
T ss_dssp ECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHC
Confidence 45778899 99999999 8 7777776666554 4 2568887 778888899999999987 33 4
Q ss_pred cccccccccccccc-c-cCcCCCCccccchhhhh
Q psy10096 80 GHIACWRWDDYFWS-Y-NNVHSSGHWRDMEEIQH 111 (125)
Q Consensus 80 g~l~~l~~~~kw~~-~-~c~~~~~~~~~~~~~~~ 111 (125)
|.++.+. ++|.. . ........+..+.++-|
T Consensus 235 G~~~~i~--~k~~~~~~~~~~~d~~y~~~~~~~~ 266 (271)
T 2iee_A 235 GSLTKLS--KQFFNKADVSKKIDADVQDVDLLEH 266 (271)
T ss_dssp THHHHHH--HHHTTTCCTTSCCCCCCBCCC----
T ss_pred CCHHHHH--HHhCCccccccCCCCcchhhhhhhh
Confidence 8888999 99987 3 33346666777777755
No 36
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=95.88 E-value=0.0034 Score=45.38 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=52.9
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEeccccC---ccceEEEecCCCCCc-------------c
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGGLLD---SKGYGIATPMGHSGL-------------V 79 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~~f~---~~gYgialp~gSpl~-------------~ 79 (125)
..+++..++++.|.+|+ +|++.+.+.+.|++.+. -.+..++. +. ...|+|++++++|-. +
T Consensus 150 ~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~ 228 (257)
T 2q88_A 150 IVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAFRKGDEALRDAFDVELAKLKES 228 (257)
T ss_dssp EECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEEcCCCHHHHHHHHHHHHHHHhC
Confidence 45688999999999999 99999999999988653 34555443 32 357888999986533 4
Q ss_pred cccccccccccc
Q psy10096 80 GHIACWRWDDYF 91 (125)
Q Consensus 80 g~l~~l~~~~kw 91 (125)
|.++.+. ++|
T Consensus 229 g~~~~i~--~k~ 238 (257)
T 2q88_A 229 GEFAKII--EPY 238 (257)
T ss_dssp THHHHHH--GGG
T ss_pred CcHHHHH--HHh
Confidence 7777777 777
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=95.71 E-value=0.0075 Score=43.14 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=46.9
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCC
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHS 76 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSp 76 (125)
..+.+..+.++.|..|+ +|++.+.+.+.|+..+.-+ +++..+....++|++++++|
T Consensus 177 ~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~ 233 (259)
T 2v25_A 177 SEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDP 233 (259)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCH
T ss_pred EEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCH
Confidence 35678899999999999 9999999999988865433 56777888889999999974
No 38
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=88.30 E-value=0.85 Score=34.89 Aligned_cols=56 Identities=11% Similarity=-0.102 Sum_probs=44.0
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC----CceeEeccccCccceEEEecCCCC
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN----CNLTQIGGLLDSKGYGIATPMGHS 76 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~----C~L~~vg~~f~~~gYgialp~gSp 76 (125)
..+..+.+..|..|+ +|.+.+.+.+.+++.+. -.+.+++......+++|++|+|-|
T Consensus 154 ~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~ 214 (310)
T 3n5l_A 154 NSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLS 214 (310)
T ss_dssp ECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSC
T ss_pred cCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCC
Confidence 356678999999999 89888999888887653 467777765555678999999954
No 39
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=88.12 E-value=1 Score=34.76 Aligned_cols=56 Identities=14% Similarity=-0.097 Sum_probs=44.7
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC----CceeEeccccCccceEEEecCCCC
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN----CNLTQIGGLLDSKGYGIATPMGHS 76 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~----C~L~~vg~~f~~~gYgialp~gSp 76 (125)
..+..+.+..|.+|+ +|.+.+.+.+.+++.+. -.+.+++......+++|++|+|-|
T Consensus 163 ~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~ 223 (321)
T 3p7i_A 163 NAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLS 223 (321)
T ss_dssp ECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSC
T ss_pred cCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCC
Confidence 456778999999999 89889999888877542 568888866666678999999954
No 40
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=80.62 E-value=1.8 Score=32.60 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=35.6
Q ss_pred cc-cCHHHHHHHHhcCC-cEEEe--ehhhhHHHHhcCCceeEecc-----ccCccceEEEecCCCC
Q psy10096 20 FV-STYKEGIDRVLEGN-YAFLM--ESTMLDYIVQRNCNLTQIGG-----LLDSKGYGIATPMGHS 76 (125)
Q Consensus 20 ~v-~~~~eGv~~vr~g~-~AfI~--d~~~l~Y~~~~~C~L~~vg~-----~f~~~gYgialp~gSp 76 (125)
++ .+..+.++.+++|+ +|.|| |.++.. ..-+|..+.- ......-.|++++|++
T Consensus 139 ~ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~ 200 (231)
T 2ozz_A 139 RVDLSYHESLQRIVKGDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDY 200 (231)
T ss_dssp EEECCHHHHHHHHHHTSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCH
T ss_pred EEECCHHHHHHHHHcCCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCH
Confidence 46 78899999999999 99999 988865 1122222221 2234445599999964
No 41
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=69.31 E-value=8.2 Score=28.35 Aligned_cols=56 Identities=7% Similarity=-0.029 Sum_probs=39.7
Q ss_pred cCHHHHHHHHhcCC-cEEEee-hhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 22 STYKEGIDRVLEGN-YAFLME-STMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~AfI~d-~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+..+.++.+.+|+ ++.+.. .+++. ...+.-++..++..+...+++|.++++|+.+
T Consensus 42 ~~~~~~~~~l~~G~~D~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~ 99 (302)
T 3ix1_A 42 TNPTDPIQLTASGAIPLALSYQPDVIL-ARSKDLPVVSVASVVRSPLNHVMFLAEQDFD 99 (302)
T ss_dssp SSTTHHHHHHHHTSCSEEEECHHHHHH-HHHTTCCEEEEEEEECSCCEEEEEEGGGCCS
T ss_pred CCCchHHHHHHCCCCCEEecCHHHHHH-HHHCCCCEEEEEEEeccCCEEEEEECCCCCC
Confidence 34457889999998 544444 33333 2344567888888777778999999999987
No 42
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=65.23 E-value=25 Score=25.73 Aligned_cols=57 Identities=5% Similarity=-0.101 Sum_probs=39.0
Q ss_pred cCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCC--CCc
Q psy10096 22 STYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGH--SGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gS--pl~ 78 (125)
.+..+.++.+.+|+ ++.+......-....+.-++..++......++++.++++| +.+
T Consensus 72 ~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~ 131 (346)
T 3qsl_A 72 AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYK 131 (346)
T ss_dssp SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCC
T ss_pred CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCC
Confidence 56778899999998 5544443333233344567777776666668899999998 776
No 43
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=64.92 E-value=24 Score=26.09 Aligned_cols=56 Identities=13% Similarity=-0.024 Sum_probs=39.5
Q ss_pred cCHHHHHHHHhcCC-c-EEEeehhhhHHHHhcCCceeEeccccC-ccceEEEecCCCCCc
Q psy10096 22 STYKEGIDRVLEGN-Y-AFLMESTMLDYIVQRNCNLTQIGGLLD-SKGYGIATPMGHSGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~-AfI~d~~~l~Y~~~~~C~L~~vg~~f~-~~gYgialp~gSpl~ 78 (125)
.+..+.++.+..|+ + +++...+.+.. ..+.-++..++.... ..+++|.++++||.+
T Consensus 66 ~~~~~~~~al~~G~~D~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~ 124 (324)
T 3ksx_A 66 PAGPQLLEALNVGSIDLGGAGDIPPLFA-QAAGADLLYVGWVPPTPKAETILVPSKSALR 124 (324)
T ss_dssp SSHHHHHHHHHTTSCSEEEEESHHHHHH-HHTTCCEEEEEEECCCGGGEEEEEETTCSCC
T ss_pred CCHHHHHHHHHCCCCCEEeecCHHHHHH-HhcCCCEEEEEEecCCCCceEEEEeCCCCCC
Confidence 45677889999998 4 46666666543 234467777775443 357899999999987
No 44
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=63.16 E-value=12 Score=32.68 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=40.3
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-cccC------ccceEEEe-cCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLLD------SKGYGIAT-PMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f~------~~gYgial-p~gSpl~ 78 (125)
..+..+-|++++.|. ++...|...+ |.+. .+++|.-|- +... ...|++|+ ++||+++
T Consensus 61 ~~s~~~Ci~~I~~g~AD~~~ld~~~v-y~A~~~~~~L~Pv~~E~y~~~~~~~~~YyaVAVVkk~s~~~ 127 (698)
T 3v83_A 61 KASYLDCIRAIAANEADAVTLDAGLV-YDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQ 127 (698)
T ss_dssp ESSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEESSCCCC
T ss_pred cCCHHHHHHHHHcCCCCEEEEChHHH-HhhccCcCCcEEEEEEeeccCCCCCcceEEEEEEeCCCCCC
Confidence 367899999999999 8877777744 5554 579986554 3221 33568775 8899876
No 45
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=62.60 E-value=19 Score=28.59 Aligned_cols=56 Identities=20% Similarity=0.430 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEe-ccccCc----------cceEEEe-cCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQI-GGLLDS----------KGYGIAT-PMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~v-g~~f~~----------~gYgial-p~gSpl~ 78 (125)
-.+..+-|++++.|. +|...|...+ |.+.+ |+|.-| .+.... ..|++|+ +++|+..
T Consensus 34 a~s~~~Ci~~I~~g~AD~~~ld~~~v-y~Ag~-~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkK~s~~~ 102 (342)
T 3skp_A 34 AETTEDCIAKIMNGEADAMSLDGGFV-YIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDL 102 (342)
T ss_dssp CSSHHHHHHHHHHTSCCBEEECHHHH-HHHHH-TTCEEEEEEECSCCTTGGGSCCCCEEEEEEEETTCSSC
T ss_pred CCCHHHHHHHHHcCCCCEEEECchhe-EEecc-CCcEEEEEEEeecCccccCCCcceEEEEEEEEcCCCCC
Confidence 368899999999999 8888887765 55544 587533 443322 2568776 5556544
No 46
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=61.80 E-value=19 Score=27.18 Aligned_cols=54 Identities=4% Similarity=-0.090 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCC-c-EEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 24 YKEGIDRVLEGN-Y-AFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 24 ~~eGv~~vr~g~-~-AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
..+-++.+.+|+ + ++....+.+.. ..+.-++..++..+...+++|+++++||.+
T Consensus 57 ~~~~~~al~~G~~D~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~ 112 (348)
T 3uif_A 57 GPVINEGFASGKIDFGIYGDLPPIIL-NASKPTVQLVAPWGTTSNSYLVVPKNSTAK 112 (348)
T ss_dssp HHHHHHHHHTTCCCEEEEESHHHHHH-HHHSCCEEEEEECCCCCCCEEEEETTCCCC
T ss_pred cHHHHHHHHcCCCCEEecCcHHHHHH-HhCCCCEEEEEeccCCCceEEEEECCCCCC
Confidence 344568889998 4 45455555443 234467777776677788899999999987
No 47
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=58.44 E-value=18 Score=28.46 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=37.3
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEeccc-cC------ccceEE-EecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIGGL-LD------SKGYGI-ATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg~~-f~------~~gYgi-alp~gSpl~ 78 (125)
..+..+.|+++++|+ ++...|... -|.+. +.|+|..|-.. .. ...|++ +++++|++.
T Consensus 40 ~~~~~~ci~aI~~g~AD~~~ld~~~-~~~A~~~~~~l~pi~~e~~~~~~~~~~~Y~avaVVkk~s~is 106 (334)
T 1h45_A 40 RDSPIQCIQAIAENRADAVTLDGGF-IYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQ 106 (334)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHH-HHHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEETTCCCC
T ss_pred cCCHHHHHHHHHcCCCCEEEeCccc-eEEeecCccCCEEEEEEeecCCCCCCCceEEEEEEeCCCCCC
Confidence 478899999999999 766666553 24444 45887765432 22 234564 567888865
No 48
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=57.60 E-value=18 Score=28.33 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-ccc------CccceEE-EecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLL------DSKGYGI-ATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f------~~~gYgi-alp~gSpl~ 78 (125)
..+..+.|+++++|+ ++...+.... |.+. +.++|..|- +.. ....|++ .++++|+++
T Consensus 42 ~~dy~~ci~ai~~g~aD~~~l~~~~~-~~A~~~~~~l~pi~ae~~~~~~~~~~~Y~sVaVVkkdS~is 108 (327)
T 1ryo_A 42 KASYLDCIRAIAANEADAVTLDAGLV-YDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQ 108 (327)
T ss_dssp ESSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCCC
T ss_pred cCCHHHHHHHHHcCCCcEEEeCccce-eEEecccCCCEEEEEEEecCCCCCCCceEEEEEEeCCCCCC
Confidence 478899999999999 7666665554 6565 567876543 222 1234453 457888875
No 49
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=50.23 E-value=46 Score=24.84 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=36.5
Q ss_pred cCHHHHHHHHhcCC-c-EEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 22 STYKEGIDRVLEGN-Y-AFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~-AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+..+.++.+.+|+ + ++....+.+. ...+.-++..++.. ...+.+|.++++|+.+
T Consensus 90 ~~~~~~~~al~~G~~D~~~~~~~~~~~-~~~~g~~~~~v~~~-~~~~~~ivv~~~s~I~ 146 (341)
T 3un6_A 90 NNWPDLMDALNSGRIDGASTLIELAMK-SKQKGSNIKAVALG-HHEGNVIMGQKGMHLN 146 (341)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHHH-HHHTTCCCEEEEES-CEECEEEEESTTCCGG
T ss_pred CCHHHHHHHHHcCCCCEEecchHHHHH-HHHCCCCeEEEeec-CCCceEEEEcCCCCCC
Confidence 45778889999998 5 4444444332 22444566666653 3567889999999976
No 50
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=49.98 E-value=31 Score=27.28 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=27.5
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEe
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQI 58 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~v 58 (125)
-.+..+-|++++.|. +|...|...+ |.+. .|+|.-|
T Consensus 33 ~~s~~dCi~~I~~g~AD~~~ld~g~v-y~Ag-~~~L~Pv 69 (335)
T 3tod_A 33 ASTTDDCIVLVLKGEADALNLDGGYI-YTAG-KCGLVPV 69 (335)
T ss_dssp ESSHHHHHHHHHHTSCCEEEECHHHH-HHHH-HTTCEEE
T ss_pred cCCHHHHHHHHHcCCCCEEEECchhe-EEec-cCCceeE
Confidence 468899999999999 8888887754 5454 4787644
No 51
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=48.70 E-value=61 Score=23.43 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=35.2
Q ss_pred cCHHHHHHHHhcCC-cE-EEeehhhhHHHHhcCCceeEeccc-cCccceEEEecCCCCCc
Q psy10096 22 STYKEGIDRVLEGN-YA-FLMESTMLDYIVQRNCNLTQIGGL-LDSKGYGIATPMGHSGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~A-fI~d~~~l~Y~~~~~C~L~~vg~~-f~~~gYgialp~gSpl~ 78 (125)
++..+.++.+++|+ ++ +....+.+ +...+..++..++.. ....+++|.++++||++
T Consensus 40 ~~~~~~~~~l~~G~~D~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~ 98 (308)
T 2x26_A 40 PAGPQMLEALNVGSIDLGSTGDIPPI-FAQAAGADLVYVGVEPPKPKAEVILVAENSPIK 98 (308)
T ss_dssp SSHHHHHHHHHHTSCSEEEECSHHHH-HHHHTTCCEEEEEEECCCGGGEEEEEETTCSCC
T ss_pred CCcHHHHHHHHCCCCCEEcccCcHHH-HHHhcCCCeEEEEEecCCCCceEEEEeCCCCCC
Confidence 34467889999998 54 44444332 222334566666543 33457899999999976
No 52
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=48.30 E-value=31 Score=25.64 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=39.3
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhH-HHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLD-YIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~-Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+.+..+.++++++|. +.||...+... .+..+. +...-..|....+-|+.|+++|+.
T Consensus 39 ~~~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g--~~~~~~~~~~n~lVlV~P~~~P~~ 97 (236)
T 3lr1_A 39 IAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADG--FGVNRKDVMYNDFVIVGPKNDPAG 97 (236)
T ss_dssp EEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTT--SEEEEEEEEECCEEEEECTTCTTC
T ss_pred EEcChHHHHHHHhcCCCCEEeecCchhHHHHHhcC--CCcceEEEEcCcEEEEEECCChhh
Confidence 4567889999999998 77776665533 333332 222234567777899999999985
No 53
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=41.86 E-value=64 Score=24.64 Aligned_cols=31 Identities=6% Similarity=-0.083 Sum_probs=23.0
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHH
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIV 49 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~ 49 (125)
+.+....+++..|..|+ ++++...+.+..++
T Consensus 173 Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i 204 (314)
T 2dvz_A 173 VPYKGSGPAVADAVGGQIELIFDNLPSSMPQI 204 (314)
T ss_dssp EECSSHHHHHHHHHHTSSSEEEEEHHHHHHHH
T ss_pred cccCCHHHHHHHHHcCCceEEEEcHHHHHHHH
Confidence 44567789999999999 88777766654444
No 54
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=41.58 E-value=73 Score=24.31 Aligned_cols=32 Identities=6% Similarity=-0.011 Sum_probs=23.5
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHh
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ 50 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~ 50 (125)
+.+....+++..|..|+ ++.+.+.+.+..+++
T Consensus 169 Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~ 201 (312)
T 2f5x_A 169 IPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQIT 201 (312)
T ss_dssp EECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHH
T ss_pred eccCChHHHHHHHHcCCccEEEechHHHHHHHH
Confidence 34567789999999999 787777666554443
No 55
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=40.77 E-value=63 Score=28.01 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=39.0
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-cccC------ccceEEE-ecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLLD------SKGYGIA-TPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f~------~~gYgia-lp~gSpl~ 78 (125)
..+..+-|+++++|. +|...|.-.+ |.+. +.|+|.-|- +... ...|++| ++++|+++
T Consensus 39 ~~s~~~Ci~~I~~g~AD~~~ld~~~~-y~A~~~~~~L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~t 105 (686)
T 2d3i_A 39 KATYLDCIKAIANNEADAISLDGGQV-FEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFT 105 (686)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTCCEEEEEEEBCCTTCCBSEEEEEEEEETTCCCC
T ss_pred CCCHHHHHHHHHcCCCCEEEeCccce-EEeccccCCCEEEEEEeecCCCCCCCceEEEEEEECCCCCC
Confidence 467899999999999 8877776654 4554 579988654 3332 2345654 46788865
No 56
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=39.58 E-value=29 Score=30.15 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-cccC------ccceEEE-ecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLLD------SKGYGIA-TPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f~------~~gYgia-lp~gSpl~ 78 (125)
..+..+-|++++.|. ++...|.-.+ |.+. ++.+|.-|- +... ...|++| ++++|++.
T Consensus 48 ~~d~~~Ci~~I~~g~AD~~~ld~~~v-y~A~~~~~~L~Pi~~E~y~~~~~~~~~YyaVAVVkK~s~i~ 114 (687)
T 3mc2_A 48 KMSHPECIRDISANKVDAVTVDGALV-AEADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGFQ 114 (687)
T ss_dssp CSCHHHHHHHHHTTSCCBEEECTTGG-GSCSSTTCCEEEEEEEEEECSSSEECEEEEEEEEETTTCCC
T ss_pred CCCHHHHHHHHHCCCCCEEEEChHHH-HhhhcccCCceEEEEEeeecCCCCCceeEEEEEEECCCCCC
Confidence 467899999999999 7777776643 4443 567775543 3222 3347877 67788875
No 57
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=38.78 E-value=67 Score=24.26 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=23.0
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHH
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIV 49 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~ 49 (125)
+.+....+++..|..|+ ++++.+.+.+..++
T Consensus 160 Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i 191 (301)
T 2qpq_A 160 VPYKGCGPALNDVLGSQIGLAVVTASSAIPFI 191 (301)
T ss_dssp EECSSHHHHHHHHHTTSSSCEEEEHHHHHHHH
T ss_pred eccCChHHHHHHHHCCCccEEEEcHHHHHHHH
Confidence 44677889999999999 77777666554444
No 58
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=38.36 E-value=47 Score=25.99 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-cccC------ccceE-EEecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLLD------SKGYG-IATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f~------~~gYg-ialp~gSpl~ 78 (125)
..+..+.|+++++|+ ++...|... -|.+. +.++|..|- +... ...|+ ++++++|++.
T Consensus 39 ~~s~~~Ci~aI~~g~aD~~~ld~~~-~~~A~~~~~~l~pi~~e~~~~~~~~~~~Y~aVaVVkkdS~is 105 (332)
T 1iej_A 39 KATYLDCIKAIANNEADAITLDGGQ-VFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFT 105 (332)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHH-HHHHTSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCCC
T ss_pred cCCHHHHHHHHHcCCCcEEEeCccc-eeEecccccCCEEEEEEEecCCCCCCCceEEEEEEeCCCCCC
Confidence 468899999999999 766655544 24444 568876653 2222 23444 5567888875
No 59
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=37.07 E-value=56 Score=28.29 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=39.0
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-cccC------ccceEEE-ecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLLD------SKGYGIA-TPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f~------~~gYgia-lp~gSpl~ 78 (125)
..+..+-|+++++|+ +|...|.-.+ |.+. +.|+|..|- +.+. ...|++| ++++|+++
T Consensus 39 ~~s~~~Ci~~I~~g~AD~~~ld~~~~-y~A~~~~~~l~pv~aE~y~~~~~~~~~Y~aVAVVkk~s~~t 105 (689)
T 1blf_A 39 RAFALECIRAIAEKKADAVTLDGGMV-FEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQ 105 (689)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEESSCCCC
T ss_pred cCCHHHHHHHHHcCCCCEEEEChhHe-EEeccccCCCEEEEEEeecCCCCCCcceEEEEEEeCCCCCC
Confidence 368899999999999 8777776653 4454 568987654 3332 2356755 46788875
No 60
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=36.70 E-value=84 Score=23.46 Aligned_cols=56 Identities=25% Similarity=0.165 Sum_probs=40.7
Q ss_pred cCHHHHHHHHhcCC-c-EEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 22 STYKEGIDRVLEGN-Y-AFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~-AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+..+.++.|..|+ + ++....+++.. ..+.-++..++..+.....++.+.++++-.
T Consensus 46 ~~~~~~~~al~sG~~D~g~~~~~~~~~a-~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~ 103 (342)
T 4esw_A 46 SNPSDVTELVGSGKVDMGLKAMVGTLAA-KARGFPVTSIGSLLDEPFTGICYLEGSGIT 103 (342)
T ss_dssp SSGGGHHHHHHHTSSSEEEEEHHHHHHH-HHTTCCEEEEEEEECSCCEEEEEETTSSCC
T ss_pred CChHHHHHHHHcCCcCEEEecHHHHHHH-HHCCCCeEEEEEeccCCccccccccccccc
Confidence 45667889999998 4 56655555543 455678888888888888888888887654
No 61
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=36.19 E-value=1.3e+02 Score=22.15 Aligned_cols=52 Identities=6% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHhcCC-cE-EEeehhhhHHHHhcCCc-eeEeccccCccc-eEEEecCCC-CCc
Q psy10096 26 EGIDRVLEGN-YA-FLMESTMLDYIVQRNCN-LTQIGGLLDSKG-YGIATPMGH-SGL 78 (125)
Q Consensus 26 eGv~~vr~g~-~A-fI~d~~~l~Y~~~~~C~-L~~vg~~f~~~g-Ygialp~gS-pl~ 78 (125)
..++.+.+|+ +. +....+++.. ..+.-+ +..++..+...+ ++|.++++| +.+
T Consensus 57 ~~~~al~~G~~D~~~~~~~~~~~~-~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i~ 113 (321)
T 2x7q_A 57 RLINLLNSNEVDIAIGLTEAFIAD-IAKGNENIHVLDTYVKSPLLWAVSTGSNRDDVT 113 (321)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHH-HHTTCTTEEEEEEEECSCCEEEEEEESSCTTCS
T ss_pred HHHHHHHcCCccEEecCcHHHHHH-HHCCCCcEEEEEEecCCCcceEEEECCCCCCCC
Confidence 4688999998 54 4433334332 233444 777765443333 589999998 876
No 62
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=34.48 E-value=79 Score=27.39 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEec-cccC-----------c-cceEEE-ecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIG-GLLD-----------S-KGYGIA-TPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg-~~f~-----------~-~gYgia-lp~gSpl~ 78 (125)
..+..+.|+++++|+ ++...|...+ |.+.+ |+|.-|- +.+. + ..|++| ++++|+.+
T Consensus 374 ~~s~~~Ci~~I~~g~AD~~~ld~~~~-y~A~~-~gL~Pv~~E~y~~~~~c~~~~g~~~~Y~aVAVVkk~s~~t 444 (686)
T 2d3i_A 374 VDETKDCIIKIMKGEADAVALDGGLV-YTAGV-CGLVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVN 444 (686)
T ss_dssp ESSHHHHHHHHHHTSCCBEEECHHHH-HHHHH-TTCEEEEEEECSCGGGC------CCCEEEEEEEESSSCCC
T ss_pred CCCHHHHHHHHHcCCCCEEEECchHH-hhhhc-CCceeeEEEeecccccccccCCCCceEEEEEEEecCCCCC
Confidence 367899999999999 8887777664 45555 9987753 3333 1 345655 45777755
No 63
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=34.12 E-value=65 Score=27.92 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=40.0
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHh-cCCceeEec-cccC------ccceEEEe-cCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQ-RNCNLTQIG-GLLD------SKGYGIAT-PMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~-~~C~L~~vg-~~f~------~~gYgial-p~gSpl~ 78 (125)
..+..+.|+++++|. +|...|.-.+ |.+. +.|+|.-|- +... ...|++|+ +++|+++
T Consensus 39 ~~s~~~Ci~~I~~g~AD~~~ld~~~v-y~A~~~~~~L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~~ 105 (691)
T 1cb6_A 39 RDSPIQCIQAIAENRADAVTLDGGFI-YEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQ 105 (691)
T ss_dssp CSSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTCEEEEEEEEEEETTEEESEEEEEEEEETTCCCC
T ss_pred CCCHHHHHHHHhcCCCCEEEEChHHh-heeccccCCCEEEEEEeecCCCCCCCceEEEEEEECCCCCC
Confidence 468899999999999 8877777653 4554 579987764 3332 34667664 5788865
No 64
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=33.35 E-value=68 Score=23.53 Aligned_cols=56 Identities=11% Similarity=-0.004 Sum_probs=37.5
Q ss_pred CHHHHHHHHhcCC-cEEEe-ehhh--hHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 23 TYKEGIDRVLEGN-YAFLM-ESTM--LDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 23 ~~~eGv~~vr~g~-~AfI~-d~~~--l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
+..--++.+.+|+ +++.- -.|. -.|+..-.-++..+|..+....|||++|+.++++
T Consensus 38 ~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~Vp~~~~i~ 97 (256)
T 3l6g_A 38 DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMNVN 97 (256)
T ss_dssp CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETTSCCC
T ss_pred ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCCCceEEEEECCccCCC
Confidence 4555688888998 66532 2233 2344332235788887776678999999999877
No 65
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=33.20 E-value=67 Score=23.90 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=36.8
Q ss_pred CHHHHHHHHhcCC-cEEE-eehhhh--HHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 23 TYKEGIDRVLEGN-YAFL-MESTML--DYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 23 ~~~eGv~~vr~g~-~AfI-~d~~~l--~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
+..-..+.+.+|+ +++. +-.|.+ .|+..-.-++..+|..+....|||++|+.++++
T Consensus 52 ~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~~i~ 111 (280)
T 3tmg_A 52 TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGTIQGFVVPSYVPIS 111 (280)
T ss_dssp CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETTSCCC
T ss_pred CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCceEEEEECCCCCCC
Confidence 3455678888998 6543 223332 233321127888887776677999999999888
No 66
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=31.01 E-value=62 Score=23.64 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=36.3
Q ss_pred ccCHHHHHHHHhcCC--cEEEe-ehhhhHHHHhcCCceeEeccccCccceEEEecCCCC
Q psy10096 21 VSTYKEGIDRVLEGN--YAFLM-ESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHS 76 (125)
Q Consensus 21 v~~~~eGv~~vr~g~--~AfI~-d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSp 76 (125)
..+..+.++++++|. +.|+. +...++.+..+..-..-....|.....+|++++++|
T Consensus 56 ~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~~~~~~~ 114 (253)
T 3gzg_A 56 YAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPASSK 114 (253)
T ss_dssp EECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETTCC
T ss_pred ECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEEEECCCC
Confidence 456778899999886 77877 556666666543210001124555667899999987
No 67
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=30.26 E-value=76 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=38.1
Q ss_pred cCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEec-cccC----------ccceEEEe-cC-CCCCc
Q psy10096 22 STYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIG-GLLD----------SKGYGIAT-PM-GHSGL 78 (125)
Q Consensus 22 ~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg-~~f~----------~~gYgial-p~-gSpl~ 78 (125)
.+..+-|++++.|. +|+..|...+ |.+.+ |+|.-|- +.+. ...|++|+ ++ +|..+
T Consensus 391 ~s~~~Ci~~I~~g~AD~~~ld~~~v-y~Ag~-~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkks~s~~t 459 (698)
T 3v83_A 391 ETTEDCIAKIMNGEADAMSLDGGFV-YIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLT 459 (698)
T ss_dssp SSHHHHHHHHHHTSCCEEEECHHHH-HHHHH-TTCEEEEEEECSCCTTGGGCCCCCEEEEEEEETTSCCCC
T ss_pred CCHHHHHHHHHcCCCCEEEECcHHH-hhhhh-cCceEEEEEeeccccccccCCCCceEEEEEEecCCCCCC
Confidence 57899999999999 8988887764 66666 9987553 3332 23578886 55 34443
No 68
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=29.51 E-value=93 Score=22.93 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=38.3
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhH-HHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLD-YIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~-Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+.+..+.++++++|. +.||...+... .+.... +...-..|..-.+-|+.|+++|+.
T Consensus 39 ~~~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g--~~~~~~~~a~N~lVlV~P~~~P~~ 97 (237)
T 3muq_A 39 IAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKG--YGVLPRKLMYNDFVIVGPKADPAK 97 (237)
T ss_dssp EEECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTT--SEEEEEEEEEEEEEEEECTTCTTC
T ss_pred EEcChHHHHHHHhcCCCCEEEecCchhHHHHHhcC--CccccEEEEeCCEEEEEeCCChhh
Confidence 3567889999999998 77776665433 333322 222234566667889999999975
No 69
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=28.80 E-value=83 Score=20.93 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
..+++....++.|+.|. .+++.+..+-.+.........-+........++++.+++.+..
T Consensus 140 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (232)
T 3ho7_A 140 YSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRR 200 (232)
T ss_dssp EESCCHHHHHHHHHTTCCEEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCH
T ss_pred EEeCCHHHHHHHHHcCCcEEEecHHHhhhhcccCceEEEEccCCCceEEEEEEEeCCCccC
Confidence 34678888899999998 6787666654443333322222333344567889999887655
No 70
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=28.31 E-value=32 Score=25.88 Aligned_cols=50 Identities=8% Similarity=0.173 Sum_probs=29.6
Q ss_pred cCHHHHHHHHhcCCcEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCC
Q psy10096 22 STYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGH 75 (125)
Q Consensus 22 ~~~~eGv~~vr~g~~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gS 75 (125)
++++++|+.+|+|+..+|.|..-- .+.-+|....+...+...+|....++
T Consensus 2 ~~ie~Ai~alr~G~~Viv~DdedR----EnEgDli~aAe~~Tpe~i~fm~~~~~ 51 (227)
T 1snn_A 2 NNVEKAIEALKKGEIILVYDSDER----EGETDMVVASQFITPEHIRIMRKDAG 51 (227)
T ss_dssp CHHHHHHHHHHTTCCEEEECCTTT----TCCEEEEEEGGGCCHHHHHHHHHHTE
T ss_pred chHHHHHHHHHCCCeEEEEeCCCC----CCceeEEEEhhhCCHHHHHHHHHcCC
Confidence 468999999999998888876541 12244444444444333333333333
No 71
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=28.28 E-value=85 Score=23.85 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=43.7
Q ss_pred ccccCHHHHHHHHhcCC--cEEEe-----ehh---hhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 19 VFVSTYKEGIDRVLEGN--YAFLM-----EST---MLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~--~AfI~-----d~~---~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
...+++++.++.|.+|. ++++- +.. .++.+.+ -+|.++|+.+-+..+.+...+|..+.
T Consensus 32 ~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~gE~~l~I~h~Ll~~~g~~l~ 99 (267)
T 2qmw_A 32 QPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--QDVFAHGEIRLDINFALYGNGTDSIS 99 (267)
T ss_dssp EEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--TSSEEEEEEEEECCEEEECCSSCCST
T ss_pred EEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--CCcEEEEEEEEEeeeEEEecCCCCHh
Confidence 46789999999999987 77773 222 3333333 36999999999999999988886554
No 72
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=28.10 E-value=1.6e+02 Score=20.78 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=35.1
Q ss_pred ccccCHHHHHHHHhcCC-c-EEEeehhhhHHHHhcCCcee-Eecc-ccCccceEEEecCCCC
Q psy10096 19 VFVSTYKEGIDRVLEGN-Y-AFLMESTMLDYIVQRNCNLT-QIGG-LLDSKGYGIATPMGHS 76 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~-AfI~d~~~l~Y~~~~~C~L~-~vg~-~f~~~gYgialp~gSp 76 (125)
++..+..+.+..+.+|. + +|++.+..+. ...-.+. .+.. ......|++++.+|++
T Consensus 151 ~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~~~~~~v~~~P~~~~~~~~~~~ai~k~~~ 209 (237)
T 3r26_A 151 APAEDVRGALALVERNEAPLGIVYGSDAVA---SKGVKVVATFPEDSHKKVEYPVAVVEGHN 209 (237)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHHHH---CSSEEEEEECCGGGSCCEEEEEEEBTTCC
T ss_pred EecCCHHHHHHHHHcCCCCEEEEEeccccc---CCCCeEEEECCcccCCeeeeeEEEEcCCC
Confidence 45678889999999997 4 5777665432 1222222 2332 3456678899999886
No 73
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=27.82 E-value=82 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=30.6
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEe-cccc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQI-GGLL 62 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~v-g~~f 62 (125)
-.+..+-|+++++|. +|+..|.-.+ |.+.+ |+|.-| .+.+
T Consensus 371 ~~s~~dCi~~I~~g~ADa~tldgg~v-y~Ag~-~~L~Pv~~E~y 412 (687)
T 3mc2_A 371 EETPEDCIAATMKGEADAMSLDGGFA-YVAGH-CGLVPVLAENY 412 (687)
T ss_dssp ESSHHHHHHHHHHTSSCBEEECHHHH-HHHHH-TTCEEEEECCB
T ss_pred CCCHHHHHHHHhCCCCCEEEECchHh-eehhh-cCcEEEeeecc
Confidence 367899999999999 9999887765 55555 998755 4444
No 74
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=27.30 E-value=1.3e+02 Score=19.62 Aligned_cols=60 Identities=15% Similarity=-0.087 Sum_probs=38.5
Q ss_pred ccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 19 VFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
..+++....++.++.|. .+++.+..+..+.....-...-+........++++.+++++..
T Consensus 135 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (222)
T 4ab5_A 135 RHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDK 195 (222)
T ss_dssp EECSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSCEEEEESTTCCEEEEEEEEEGGGTTC
T ss_pred EecCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcEEEEecCCCccceEEEEEEeCCcccC
Confidence 45677888889999998 7888766655544333332222333334667888888876654
No 75
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=26.95 E-value=46 Score=25.17 Aligned_cols=54 Identities=6% Similarity=0.153 Sum_probs=34.5
Q ss_pred ccCHHHHHHHHhcCCcEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
+++++++|+.+|+|+..++.|..-- .+.-+|...-+...+...+|....++.|.
T Consensus 12 ~~~ie~Ai~alr~G~~Viv~DdedR----EnEgDLi~aAe~~T~e~i~fm~r~~~Gli 65 (233)
T 1k4i_A 12 FDAIPDVIQAFKNGEFVVVLDDPSR----ENEADLIIAAESVTTEQMAFMVRHSSGLI 65 (233)
T ss_dssp CCCHHHHHHHHHTTCCEEEECCTTT----TCCEEEEEEGGGCCHHHHHHHHHHBCSCC
T ss_pred hhHHHHHHHHHHCCCeEEEEeCCCC----CcceeEEEEhhhCCHHHHHHHHHcCCCCE
Confidence 5789999999999998888775431 12244555555555555555555555444
No 76
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=26.59 E-value=1.4e+02 Score=21.70 Aligned_cols=55 Identities=9% Similarity=-0.062 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCc-eeEeccccCccceEEEecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCN-LTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~-L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
..+..+|++++.+|. +..+.+.+.-+- +.|. -...-.+|......++++++.|+.
T Consensus 38 ~~~S~~~~~~l~~g~~Dig~~~~~~~~~---e~~~~~~l~~~~i~~d~lvvvv~~~~p~~ 94 (264)
T 4ecf_A 38 GGGTGTGLSQIQEGAVQIGNSDLFAGEQ---KGINARQLVDHRVAVVGITPIVNKKVGVK 94 (264)
T ss_dssp EECHHHHHHHHHHTSSSEEEESSCGGGS---TTCCGGGEECCEEEEEEEEEEECTTSSCS
T ss_pred eCCCHHHHHHHHcCCCchhhccCCCChh---HHhhccCCEEEEEEEEEEEEEEcCCCccc
Confidence 468899999999998 554456554221 1111 122345677788899999999986
No 77
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=25.98 E-value=49 Score=24.48 Aligned_cols=54 Identities=9% Similarity=0.213 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHhcCCcEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
+++++++|+.+|+|+..++.|..-- .+.-+|....+...+...+|....++.+.
T Consensus 5 ~~~ie~Ai~~lr~G~~Viv~DdedR----EnEgDli~aAe~~T~e~i~fm~~~~~Gli 58 (204)
T 1tks_A 5 FTPIEEALEAYKNGEFLIVMDDEDR----ENEGDLIMAAELITQEKMAFLVRYSSGYV 58 (204)
T ss_dssp SCCHHHHHHHHHTTCCEEEESSSCT----TCBCEEEEEGGGCCHHHHHHHHHTBCSCC
T ss_pred hhhHHHHHHHHHCCCeEEEEeCCCC----CCCEEEEEEhhhCCHHHHHHHHHhCCCcE
Confidence 5789999999999998877775431 11244555554444444455555554443
No 78
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=25.63 E-value=93 Score=21.07 Aligned_cols=59 Identities=3% Similarity=-0.170 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+++....++.|+.|. .+++.+..+..+.........-+........++++.+++++..
T Consensus 146 ~~~~~~~~~~~v~~g~giailp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (241)
T 3oxn_A 146 RAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHS 205 (241)
T ss_dssp ECSSTHHHHHHC--CCCEEEEEHHHHHHHHHHTTEEEECCSSCCCCCCEEEEEEGGGTTC
T ss_pred ECCcHHHHHHHHhCCCeEEEcHHHHHHHhcccCCceEeCCCCCCCcccEEEEEcCcCCCC
Confidence 4678888899999998 7787666655443333322222233344667888888877654
No 79
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=25.42 E-value=51 Score=24.41 Aligned_cols=23 Identities=4% Similarity=0.333 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHhcCCcEEEeehh
Q psy10096 21 VSTYKEGIDRVLEGNYAFLMEST 43 (125)
Q Consensus 21 v~~~~eGv~~vr~g~~AfI~d~~ 43 (125)
+++++++++.+|+|+..++.|..
T Consensus 4 ~~~ie~Ai~~lr~G~~Viv~Dde 26 (206)
T 3mio_A 4 LDSVERAVADIAAGKAVIVIDDE 26 (206)
T ss_dssp CCCHHHHHHHHHTTCCEEEESSS
T ss_pred chhHHHHHHHHHCCCeEEEEeCC
Confidence 57899999999999988777754
No 80
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=24.92 E-value=91 Score=20.77 Aligned_cols=56 Identities=4% Similarity=-0.076 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHhcCC--cEEEe-ehhhhHHHHhcCCceeE--eccccCccceEEEecCCCCCc
Q psy10096 21 VSTYKEGIDRVLEGN--YAFLM-ESTMLDYIVQRNCNLTQ--IGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 21 v~~~~eGv~~vr~g~--~AfI~-d~~~l~Y~~~~~C~L~~--vg~~f~~~gYgialp~gSpl~ 78 (125)
..+..+.++++++|. +.++. +...+..+..+. +.. ....|.....+|++++++|+.
T Consensus 33 ~~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vlv~~~~~~~~ 93 (231)
T 1atg_A 33 SGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQG--FALPGSRFTYAIGKLVLWSAKPGLVD 93 (231)
T ss_dssp EECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTT--CBCTTCCEEEEECCEEEEESSTTTSC
T ss_pred ECCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcC--CCcCCceeEeeeeeEEEEEcCCCCCC
Confidence 356788899999885 56655 333344333332 110 112455667899999999975
No 81
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=23.30 E-value=1.6e+02 Score=22.45 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=43.6
Q ss_pred ccccCHHHHHHHHhcCC--cEEEe-----ehh---hhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 19 VFVSTYKEGIDRVLEGN--YAFLM-----EST---MLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~--~AfI~-----d~~---~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
...+++++.++.|.+|. ||+|- +.. .++.+.+ -+|.++|+.+-+..+.+...+|..+.
T Consensus 30 ~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~gE~~l~I~h~Ll~~~g~~l~ 97 (283)
T 2qmx_A 30 LPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--RPVVILAETFVKVEHCLLGLPGASVE 97 (283)
T ss_dssp EEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--SSEEEEEEEEEECCCEEEECSSCCTT
T ss_pred CcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--CCcEEEEEEEEeeeeeEecCCCCChh
Confidence 45789999999999986 78774 222 3333434 57999999999999998888886654
No 82
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=21.77 E-value=2e+02 Score=20.33 Aligned_cols=59 Identities=7% Similarity=-0.135 Sum_probs=34.7
Q ss_pred cccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 20 FVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 20 ~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
.+++....++.|+.|. .+++.+..+-.+.........-+........+.++.+++.+..
T Consensus 232 ~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (310)
T 2esn_A 232 QLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHVQHVGR 291 (310)
T ss_dssp EESCHHHHHHHHHTSSCEEEEEHHHHHHHHHHHTEEEECCSSCCCCEEEEEEEECC--CC
T ss_pred eCCCHHHHHHHHhcCCeEEEcHHHHHHHHhhcCCceEecCCCCCCCeeEEEEEeCcccCC
Confidence 4678888888899998 7888766554443333322122223334567788888876654
No 83
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=21.73 E-value=2.3e+02 Score=20.30 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCC-cEEEeehhhhHHHHh----------cCCceeEeccccCccceEEEecCCCCCc
Q psy10096 23 TYKEGIDRVLEGN-YAFLMESTMLDYIVQ----------RNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 23 ~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~----------~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
+..++++.+.+|+ +..+........... ..-++..++. +....+.|+++++||++
T Consensus 59 ~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~lvv~~~~~i~ 124 (314)
T 1us5_A 59 GSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAA-LYPEVVHVVARKDAGIR 124 (314)
T ss_dssp CHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEE-EEEEEEEEEEETTSSCS
T ss_pred cHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhh-cCcceEEEEEECCCCCC
Confidence 4678899999998 654443332211111 1134555543 34456789999999986
No 84
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=21.61 E-value=1.1e+02 Score=23.73 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=43.7
Q ss_pred ccccCHHHHHHHHhcCC--cEEEe-----ehhhhH-HHH-hcCCceeEeccccCccceEEEecCCCCCc
Q psy10096 19 VFVSTYKEGIDRVLEGN--YAFLM-----ESTMLD-YIV-QRNCNLTQIGGLLDSKGYGIATPMGHSGL 78 (125)
Q Consensus 19 ~~v~~~~eGv~~vr~g~--~AfI~-----d~~~l~-Y~~-~~~C~L~~vg~~f~~~gYgialp~gSpl~ 78 (125)
....++.+.++.|.+|. ||+|- +..+.. |-. .+.-+|.++|+.+-+..+.+...+|..+.
T Consensus 35 ~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE~~l~I~h~Ll~~~g~~l~ 103 (313)
T 3mwb_A 35 IPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVELS 103 (313)
T ss_dssp EEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEEEEEECCCEEEECTTCCGG
T ss_pred EecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEEEEEeeeEEEEcCCCCCcc
Confidence 45789999999999996 78873 333332 222 22257999999999999998888776654
Done!