RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10096
(125 letters)
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic
substrate binding proteins. Prokaryotic homologues are
represented by a separate alignment: PBPb.
Length = 133
Score = 106 bits (268), Expect = 4e-31
Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 2 IDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGL 61
Y +MW YM K P VFV +Y EG+ RV NYAF+MES LDY + RNC+L +G
Sbjct: 33 NPEYSRMWPYM--KSPEVFVKSYAEGVQRVRVSNYAFIMESPYLDYELSRNCDLMTVGEE 90
Query: 62 LDSKGYGIATPMGHSGLVGHI 82
KGYGIA P G S L +
Sbjct: 91 FGRKGYGIAFPKG-SPLRDDL 110
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel. This family
includes the four transmembrane regions of the
ionotropic glutamate receptors and NMDA receptors.
Length = 268
Score = 104 bits (261), Expect = 1e-28
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 2 IDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGN--YAFLMESTMLDYIVQRN-CNLTQI 58
TY++MW YM + K V V +Y+EG+ RV +GN YAFLMES L+Y V R+ C LT +
Sbjct: 131 NPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYAFLMESAYLEYEVARDPCKLTTV 190
Query: 59 GGLLDSKGYGIATPMGHSGLVGHI 82
G + +KGYGIA P G S L +
Sbjct: 191 GEVFGTKGYGIAFPKG-SPLRDKL 213
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 29.1 bits (66), Expect = 0.52
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 14 NKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNL 55
+KP VFV +++ G Y ++LD I R ++
Sbjct: 160 VEKPKVFVG------NKINAGIYIL--NPSVLDRIPLRPTSI 193
>gnl|CDD|224892 COG1981, COG1981, Predicted membrane protein [Function unknown].
Length = 149
Score = 28.5 bits (64), Expect = 0.58
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 81 HIACWRWDDYFWSYNNVHSSGHWRDMEEI 109
H C R F NV S+ +R EI
Sbjct: 104 HGYCGRLLKKFARGENVRSARFYRVFNEI 132
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 26.5 bits (59), Expect = 3.9
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 73 MGHSGLVGHIACWR-----WDDYF-WSYNNVHSSGHWRDMEEIQHETQGK 116
G +G+I+ + +DY W NN S W+D+E I+ G
Sbjct: 198 NGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGP 247
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 26.6 bits (59), Expect = 4.0
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 67 YGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWR-DMEEIQHETQGK 116
YG+ + +VG CWR D + S G WR D E+ + +G
Sbjct: 178 YGMMIAGIIAIVVGLFLCWRLRDKP-QAMGLPSVGEWRHDALELAQQQEGA 227
>gnl|CDD|201944 pfam01735, PLA2_B, Lysophospholipase catalytic domain. This
family consists of Lysophospholipase / phospholipase B
EC:3.1.1.5 and cytosolic phospholipase A2 EC:3.1.4
which also has a C2 domain pfam00168. Phospholipase B
enzymes catalyze the release of fatty acids from
lysophsopholipids and are capable in vitro of
hydrolysing all phospholipids extractable form yeast
cells. Cytosolic phospholipase A2 associates with
natural membranes in response to physiological
increases in Ca2+ and selectively hydrolyses
arachidonyl phospholipids, the aligned region
corresponds the the carboxy-terminal Ca2+-independent
catalytic domain of the protein as discussed in.
Length = 490
Score = 26.2 bits (58), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 51 RNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRW 87
R N T +GGLL S Y +A G S LVG +A +
Sbjct: 26 RTDNETGLGGLLQSATY-LAGLSGGSWLVGSLAVNNF 61
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 25.7 bits (57), Expect = 6.6
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 14/52 (26%)
Query: 28 IDRVLEGNYAFLMESTM--LDYIVQRNCNLTQIGGLLDSKGY-----GIATP 72
ID +E Y ++E T+ D ++ L + GY +A P
Sbjct: 83 IDYAIERGYNIILEGTLRSPDVAR-------KLARKLKAAGYEVEVYVVAVP 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.435
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,242,675
Number of extensions: 515578
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 14
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)