RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10096
         (125 letters)



>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 186

 Score = 25.2 bits (55), Expect = 2.4
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 88  DDYFWSYNNVHSSGHWRDMEEIQHETQGKKEVQTSQ 123
           DD+ ++Y  + S G  +D+         +K  Q  Q
Sbjct: 35  DDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQ 70


>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
           Sulfolobus shibatae [TaxId: 2286]}
          Length = 164

 Score = 24.7 bits (54), Expect = 3.3
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 50  QRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIA 83
           +++  + ++   LD K YGI +      ++ H+ 
Sbjct: 77  EKSDVIWKVVEELDWKRYGIESDQYQMVVMVHLC 110


>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli
          [TaxId: 562]}
          Length = 196

 Score = 24.4 bits (52), Expect = 4.3
 Identities = 5/43 (11%), Positives = 14/43 (32%)

Query: 56 TQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVH 98
            +G  + + G+ +         +GH     +    +  N+  
Sbjct: 12 HNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.435 

Gapped
Lambda     K      H
   0.267   0.0344    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,844
Number of extensions: 21144
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 7
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)