BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10100
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8MSF5|RNK_DROME Ribonuclease kappa OS=Drosophila melanogaster GN=CG40127 PE=3
SV=1
Length = 95
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 1 MKICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVER 60
MKICGPKLSLCG+IIS WGIVQL LMG+F++I SVALIEDLP EE + S++DFY R
Sbjct: 1 MKICGPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLPLEE-EYHSLEDFYAAANR 59
Query: 61 GYT 63
Y
Sbjct: 60 AYN 62
>sp|Q7Z0Q2|RNKB_CERCA Ribonuclease kappa-B OS=Ceratitis capitata PE=3 SV=1
Length = 95
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 1 MKICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVER 60
MKICGPKLSLCG+IIS WGI+QL LMG+F++I SVALIEDLP +E F S+++FY
Sbjct: 1 MKICGPKLSLCGLIISVWGIIQLVLMGLFFYINSVALIEDLPIDE-EFNSVEEFYTAATS 59
Query: 61 GYT 63
Y
Sbjct: 60 AYN 62
>sp|Q3ZC23|RNK_BOVIN Ribonuclease kappa OS=Bos taurus GN=RNASEK PE=3 SV=1
Length = 98
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHF----ASIDDFYQTVE 59
CGPKL+ CG+++SAWG++ L ++G+F+++ S LIED+P E F +I + Y+ V
Sbjct: 7 CGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVS 66
>sp|Q8K3C0|RNK_MOUSE Ribonuclease kappa OS=Mus musculus GN=Rnasek PE=3 SV=1
Length = 98
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHF----ASIDDFYQTVE 59
CGPKL+ CG+++SAWG++ L ++G+F+++ S LIED+P E F +I + Y+ V
Sbjct: 7 CGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVS 66
>sp|Q6P5S7|RNK_HUMAN Ribonuclease kappa OS=Homo sapiens GN=RNASEK PE=2 SV=1
Length = 98
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHF----ASIDDFYQTVE 59
CGPKL+ CG+++SAWG++ L ++G+F+++ S LIED+P E F +I + Y+ V
Sbjct: 7 CGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVS 66
>sp|Q0P467|RNKA_DANRE Ribonuclease kappa-A OS=Danio rerio GN=rnaseka PE=2 SV=1
Length = 101
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGYT 63
CGPKL+ CG+++S WG++ LAL+G+F+ S LIED+P E S D Q+V + Y
Sbjct: 7 CGPKLAACGLVLSIWGVIMLALLGIFFTTHSAILIEDVPLTEEDLHSQDTPPQSVYKLYN 66
>sp|A2VDC7|RNKA_XENLA Ribonuclease kappa-A OS=Xenopus laevis GN=rnasek-a PE=3 SV=1
Length = 101
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEE 45
CGPKL+ CG++IS WG++ L L+GVF+++ S LIED+P E
Sbjct: 7 CGPKLAACGIVISVWGVIMLILLGVFFNVHSAVLIEDVPFTE 48
>sp|Q566G2|RNKB_XENLA Ribonuclease kappa-B OS=Xenopus laevis GN=rnasek-b PE=3 SV=1
Length = 101
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEET 46
CGPKL+ CG+++S WG++ L L+GVF+++ S LIED+P E
Sbjct: 7 CGPKLAACGIVLSVWGVIMLVLLGVFFNVHSAVLIEDVPFTEA 49
>sp|Q0P442|RNKB_DANRE Ribonuclease kappa-B OS=Danio rerio GN=rnasekb PE=3 SV=1
Length = 101
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 4 CGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTV 58
CGPKL+ CG+++S WG++ L+++G+F+ +S LIED+P E + D Q +
Sbjct: 7 CGPKLAACGIVLSVWGVIMLSMLGIFFSAKSAVLIEDVPFTEEDIRNDKDPPQII 61
>sp|Q9NDV2|RNKA_CERCA Ribonuclease kappa-A OS=Ceratitis capitata PE=2 SV=1
Length = 138
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 16 SAWGIVQLALM-GVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGYT 63
S WGI+QL LM G+F++I SVALIEDLP +E F S+++FY Y
Sbjct: 73 SVWGIIQLVLMMGLFFYINSVALIEDLPIDE-EFNSVEEFYTAATSAYN 120
>sp|Q18BI4|PNP_CLOD6 Polyribonucleotide nucleotidyltransferase OS=Clostridium difficile
(strain 630) GN=pnp PE=3 SV=1
Length = 703
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG LSL + +V MG+ H VA++ D+ G E H +D E G
Sbjct: 445 VCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAVLSDIQGMEDHLGDMDFKVAGTEYGI 504
Query: 63 TLL 65
T +
Sbjct: 505 TAI 507
>sp|C1F8M1|PNP_ACIC5 Polyribonucleotide nucleotidyltransferase OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=pnp PE=3 SV=1
Length = 806
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG L+L I G V MG+ A++ D+ G E H+ +D +G
Sbjct: 445 VCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAILTDIAGAEDHYGDMDFKVAGTRKGI 504
Query: 63 TLL 65
T L
Sbjct: 505 TAL 507
>sp|Q2SMK9|PNP_HAHCH Polyribonucleotide nucleotidyltransferase OS=Hahella chejuensis
(strain KCTC 2396) GN=pnp PE=3 SV=1
Length = 703
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG L+L I V MG+ S A++ D+ G+E H +D E+G
Sbjct: 444 VCGSSLALMDAGIPVKAPVAGIAMGLVKEGDSFAVLTDILGDEDHLGDMDFKVAGTEKGV 503
Query: 63 TLL 65
T L
Sbjct: 504 TAL 506
>sp|Q7VIL0|PNP_HELHP Polyribonucleotide nucleotidyltransferase OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=pnp PE=3 SV=1
Length = 709
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASID 52
+CG L+LC I ++ MG+ A++ D+ G E H +D
Sbjct: 448 VCGGSLALCACGIKVESLIAGVAMGLVTQDEQCAILTDISGLEDHDGDMD 497
>sp|Q0BPK3|PNP_GRABC Polyribonucleotide nucleotidyltransferase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=pnp
PE=3 SV=1
Length = 720
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG L+L + V MG+ R+ A++ D+ G+E H +D E+G
Sbjct: 443 VCGSSLALMDAGVPLKRPVAGIAMGLIKEDRAFAVLSDILGDEDHLGDMDFKVAGTEQGV 502
Query: 63 TLL 65
T L
Sbjct: 503 TSL 505
>sp|Q0A7A1|PNP_ALHEH Polyribonucleotide nucleotidyltransferase OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=pnp PE=3 SV=2
Length = 698
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG LSL + V MG+ A++ D+ G+E H +D E G
Sbjct: 445 VCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDILGDEDHLGDMDFKVAGTESGV 504
Query: 63 TLL 65
T L
Sbjct: 505 TAL 507
>sp|Q3J9C0|PNP_NITOC Polyribonucleotide nucleotidyltransferase OS=Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848) GN=pnp PE=3 SV=1
Length = 695
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG LSL + V MG+ A++ D+ G+E H +D E+G
Sbjct: 443 VCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFAVLSDILGDEDHLGDMDFKVAGTEKGI 502
Query: 63 TLL 65
T L
Sbjct: 503 TAL 505
>sp|Q609C6|PNP_METCA Polyribonucleotide nucleotidyltransferase OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=pnp PE=3 SV=1
Length = 691
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASID 52
+CG L+L + G V MG+ A++ D+ G+E H +D
Sbjct: 441 VCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAVLSDIMGDEDHLGDMD 490
>sp|A6TM05|PNP2_ALKMQ Polyribonucleotide nucleotidyltransferase 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=pnp2 PE=3 SV=1
Length = 702
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG LSL + G+V MG+ +A++ D+ G E +D E G
Sbjct: 440 VCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDIQGMEDALGDMDLKVAGTENGI 499
Query: 63 TLL 65
T L
Sbjct: 500 TAL 502
>sp|A6TM00|PNP1_ALKMQ Polyribonucleotide nucleotidyltransferase 1 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=pnp1 PE=3 SV=1
Length = 702
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG LSL + G+V MG+ +A++ D+ G E +D E G
Sbjct: 440 VCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDIQGMEDALGDMDLKVAGTENGI 499
Query: 63 TLL 65
T L
Sbjct: 500 TAL 502
>sp|A9HF35|PNP_GLUDA Polyribonucleotide nucleotidyltransferase OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=pnp PE=3 SV=1
Length = 712
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG L+L + V MG+ R A++ D+ G+E H +D E G
Sbjct: 442 VCGTSLALMDAGVPLKRPVAGIAMGLIKEDRGFAVLSDILGDEDHLGDMDFKVAGTESGI 501
Query: 63 TLL 65
T L
Sbjct: 502 TAL 504
>sp|A8IGA3|PNP_AZOC5 Polyribonucleotide nucleotidyltransferase OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=pnp PE=3 SV=2
Length = 724
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVERGY 62
+CG LSL + V MG+ A++ D+ G+E H +D E G
Sbjct: 446 VCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAVLSDILGDEDHLGDMDFKVAGTESGV 505
Query: 63 TLL 65
T L
Sbjct: 506 TAL 508
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.144 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,114,896
Number of Sequences: 539616
Number of extensions: 645267
Number of successful extensions: 2486
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2448
Number of HSP's gapped (non-prelim): 41
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)