Query psy10100
Match_columns 65
No_of_seqs 78 out of 80
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:54:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_J Photosystem II reaction 60.6 11 0.00036 20.5 3.1 20 14-33 13-32 (40)
2 2js5_A Uncharacterized protein 57.1 4.8 0.00016 24.1 1.5 31 31-64 23-53 (71)
3 3kl4_B DPAP B, YSCV, signal pe 54.2 7 0.00024 21.2 1.7 13 12-24 19-31 (42)
4 3arc_L Photosystem II reaction 50.4 14 0.00046 19.8 2.4 17 17-33 18-34 (37)
5 3csx_A Putative uncharacterize 45.5 7.3 0.00025 23.8 1.0 31 31-64 35-65 (81)
6 2fyu_K Ubiquinol-cytochrome C 43.0 41 0.0014 19.0 3.9 46 3-50 5-54 (56)
7 2ls2_A High affinity copper up 37.0 10 0.00036 18.4 0.0 18 8-25 2-19 (26)
8 2yiu_B Cytochrome C1, heme pro 24.2 55 0.0019 23.5 2.8 29 14-42 229-257 (263)
9 1rh1_A Colicin B; FEPA, cytoto 23.9 48 0.0016 26.2 2.6 18 13-30 480-497 (511)
10 4ev6_A Magnesium transport pro 23.0 60 0.0021 22.5 2.8 28 13-44 280-309 (339)
11 2knc_B Integrin beta-3; transm 22.2 1.2E+02 0.0041 17.7 3.6 39 3-41 3-41 (79)
12 1zrt_D Cytochrome C1; cytochro 22.2 64 0.0022 23.0 2.8 27 15-41 227-253 (258)
13 3cx5_D Cytochrome C1, heme pro 21.3 69 0.0023 22.7 2.8 23 15-37 208-230 (248)
14 2qjy_B Cytochrome C1; cytochro 21.3 68 0.0023 23.1 2.8 28 15-42 229-256 (269)
15 1pp9_D Cytochrome C-1, cytochr 20.8 72 0.0025 22.5 2.8 19 15-33 204-222 (241)
No 1
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=60.62 E-value=11 Score=20.54 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy10100 14 IISAWGIVQLALMGVFYHIR 33 (65)
Q Consensus 14 vlSvWGii~L~llGi~F~~~ 33 (65)
|--+=|+.-+.++|+|||-.
T Consensus 13 vgtv~G~~vi~~~giFfyGs 32 (40)
T 3arc_J 13 VATVAGMGVIVIVGLFFYGA 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhhhheeeEEEeec
Confidence 44456888899999999854
No 2
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=57.07 E-value=4.8 Score=24.11 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=21.4
Q ss_pred hhhhhhhhcCCCCCCcccCchhhHHHHHHHhhhc
Q psy10100 31 HIRSVALIEDLPGEETHFASIDDFYQTVERGYTL 64 (65)
Q Consensus 31 ~~~s~~L~edlp~~~~~~~s~~~f~~~~~~~Y~~ 64 (65)
..+-.-|.||||. +|..+.+--++.+++|..
T Consensus 23 kmdLHDLaEdLP~---~w~~i~~vA~~tyda~~~ 53 (71)
T 2js5_A 23 KMDLHDLAEDLPT---GWNRIMEVAEKTYEAYRQ 53 (71)
T ss_dssp HHHHHHHHHSTTT---SGGGHHHHHHHHHHHHHH
T ss_pred HHhHHHHhccchh---hHHHHHHHHHHHHHHHHH
Confidence 3445678999997 677776666777777653
No 3
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=54.16 E-value=7 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q psy10100 12 GVIISAWGIVQLA 24 (65)
Q Consensus 12 c~vlSvWGii~L~ 24 (65)
-+|+-+||.+.|+
T Consensus 19 ilvlliwgtvlll 31 (42)
T 3kl4_B 19 ILVLLIWGTVLLL 31 (42)
T ss_pred ehhHHHHHHHHHh
Confidence 4678899987653
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=50.36 E-value=14 Score=19.81 Aligned_cols=17 Identities=6% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy10100 17 AWGIVQLALMGVFYHIR 33 (65)
Q Consensus 17 vWGii~L~llGi~F~~~ 33 (65)
-||.+...++|++|+..
T Consensus 18 y~GLLlifvlavlFssy 34 (37)
T 3arc_L 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 49999999999999764
No 5
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=45.52 E-value=7.3 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=21.4
Q ss_pred hhhhhhhhcCCCCCCcccCchhhHHHHHHHhhhc
Q psy10100 31 HIRSVALIEDLPGEETHFASIDDFYQTVERGYTL 64 (65)
Q Consensus 31 ~~~s~~L~edlp~~~~~~~s~~~f~~~~~~~Y~~ 64 (65)
..+=.-|.||||. +|..+-+--++.+++|..
T Consensus 35 kmdLHDLaEdLP~---~w~~i~~vA~~tyda~~~ 65 (81)
T 3csx_A 35 KMDLHDLAEGLPT---DYENLVETAEKTYEIFRE 65 (81)
T ss_dssp HHHHHHHHHHTTT---TGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchh---hHHHHHHHHHHHHHHHHH
Confidence 3455678999997 677766655677777653
No 6
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=43.01 E-value=41 Score=18.95 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=32.1
Q ss_pred ccCCcchhH----HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCcccCc
Q psy10100 3 ICGPKLSLC----GVIISAWGIVQLALMGVFYHIRSVALIEDLPGEETHFAS 50 (65)
Q Consensus 3 ~cGpk~s~c----c~vlSvWGii~L~llGi~F~~~s~~L~edlp~~~~~~~s 50 (65)
+.|||.... .--++.||.. +.+|+.|.++......-+|+=+..|..
T Consensus 5 ~~g~~~~~~~~~w~psa~~~Gaa--a~v~~ly~tdwr~IL~~IP~ig~kf~k 54 (56)
T 2fyu_K 5 FLGPRYRQLARNWVPTASLWGAV--GAVGLVWATDWRLILDWVPYINGKFKK 54 (56)
T ss_dssp GCSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTCHHHHTSSSSCCCCCC-
T ss_pred cccHhHHHHHHHHhhhhhhhhhh--hhhheeeeccHHHHHhhcCccCCccCC
Confidence 455554432 3345678875 567899999999999999986666654
No 7
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=36.98 E-value=10 Score=18.42 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy10100 8 LSLCGVIISAWGIVQLAL 25 (65)
Q Consensus 8 ~s~cc~vlSvWGii~L~l 25 (65)
-+.-.+++|+-||+.|++
T Consensus 2 ~s~~~~v~Sci~ifll~~ 19 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAM 19 (26)
Confidence 345567888888876654
No 8
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=24.24 E-value=55 Score=23.46 Aligned_cols=29 Identities=7% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCC
Q psy10100 14 IISAWGIVQLALMGVFYHIRSVALIEDLP 42 (65)
Q Consensus 14 vlSvWGii~L~llGi~F~~~s~~L~edlp 42 (65)
-+.+|.+++|+++.++.+.--...-.|+.
T Consensus 229 ~lG~~vl~fL~il~~l~y~~kr~~W~~vk 257 (263)
T 2yiu_B 229 QVGFVSVIFLIVLAALLYLTNKKLWQPIK 257 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 36889999999999987765555555554
No 9
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=23.91 E-value=48 Score=26.21 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10100 13 VIISAWGIVQLALMGVFY 30 (65)
Q Consensus 13 ~vlSvWGii~L~llGi~F 30 (65)
.++++|||+.+++.|.|.
T Consensus 480 t~lGiiGIii~avVgAlI 497 (511)
T 1rh1_A 480 TVVGFVGVVIAGAIGAFI 497 (511)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 467889987666666543
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.99 E-value=60 Score=22.51 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=21.4
Q ss_pred HHHHHHHHHH--HHHHHHHHhhhhhhhhcCCCCC
Q psy10100 13 VIISAWGIVQ--LALMGVFYHIRSVALIEDLPGE 44 (65)
Q Consensus 13 ~vlSvWGii~--L~llGi~F~~~s~~L~edlp~~ 44 (65)
-+|++|.+|+ +.++..+|.+| ++.+|..
T Consensus 280 k~LTiit~IflP~T~IaGiyGMN----f~~mPel 309 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMN----FSYLPLA 309 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCC----CSCCTTS
T ss_pred HHHHHHHHHHHHHHHHHhhccCc----CCCCCCc
Confidence 3789999987 56778889988 4567753
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.24 E-value=1.2e+02 Score=17.68 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=25.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q psy10100 3 ICGPKLSLCGVIISAWGIVQLALMGVFYHIRSVALIEDL 41 (65)
Q Consensus 3 ~cGpk~s~cc~vlSvWGii~L~llGi~F~~~s~~L~edl 41 (65)
-|.++-..-..++++-|-|.|+-|-++.-.+-..-+.|-
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777888888777766666666666655555553
No 12
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=22.21 E-value=64 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCC
Q psy10100 15 ISAWGIVQLALMGVFYHIRSVALIEDL 41 (65)
Q Consensus 15 lSvWGii~L~llGi~F~~~s~~L~edl 41 (65)
+.+|.+++|+++.++.+.--...-.|+
T Consensus 227 ~G~~vl~fL~il~~l~y~~kr~~W~~v 253 (258)
T 1zrt_D 227 MGLVAMVMLGLLSVMLYLTNKRLWAPY 253 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 678999999999988775444444444
No 13
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=21.33 E-value=69 Score=22.70 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q psy10100 15 ISAWGIVQLALMGVFYHIRSVAL 37 (65)
Q Consensus 15 lSvWGii~L~llGi~F~~~s~~L 37 (65)
+++|.+++|+++.++.+.--...
T Consensus 208 ~G~~vl~fL~il~~l~y~~kr~~ 230 (248)
T 3cx5_D 208 LGLKTVIILSSLYLLSIWVKKFK 230 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999998876543333
No 14
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=21.26 E-value=68 Score=23.07 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCC
Q psy10100 15 ISAWGIVQLALMGVFYHIRSVALIEDLP 42 (65)
Q Consensus 15 lSvWGii~L~llGi~F~~~s~~L~edlp 42 (65)
+.+|.+++|+++.++.+.--...-.|+.
T Consensus 229 lG~~Vl~fL~il~~l~y~~kr~~W~~vk 256 (269)
T 2qjy_B 229 AGFTAVMFLTVLSVLLYLTNKRLWAGVK 256 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6789999999999988765555566664
No 15
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=20.79 E-value=72 Score=22.47 Aligned_cols=19 Identities=5% Similarity=-0.026 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy10100 15 ISAWGIVQLALMGVFYHIR 33 (65)
Q Consensus 15 lSvWGii~L~llGi~F~~~ 33 (65)
+++|.+++|+++.++.+.-
T Consensus 204 ~G~~vl~fL~il~~l~y~~ 222 (241)
T 1pp9_D 204 MGLKMLLMMGLLLPLVYAM 222 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6889999999999887653
Done!