Query psy10100
Match_columns 65
No_of_seqs 78 out of 80
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 17:54:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10100.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10100hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 69.3 2.9 0.00021 20.8 3.1 22 13-34 6-27 (34)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 64.3 2.6 0.00019 21.3 2.4 16 17-32 18-33 (37)
3 d1x3ha1 g.39.1.3 (A:8-42) Leup 17.8 15 0.0011 17.5 0.3 10 3-12 6-15 (35)
4 d1rh1a2 f.1.1.1 (A:313-511) Co 16.6 44 0.0032 21.6 2.6 17 13-29 168-184 (199)
5 d1fafa_ a.2.3.1 (A:) Large T a 14.4 33 0.0024 18.5 1.3 15 49-64 47-61 (79)
6 d2oy9a1 a.276.1.1 (A:6-90) Unc 14.0 26 0.0019 20.0 0.7 15 50-64 15-29 (85)
7 d1a1ia3 g.37.1.1 (A:160-187) Z 13.7 23 0.0017 16.6 0.4 9 1-9 6-14 (28)
8 d1my6a2 d.44.1.1 (A:89-198) Fe 11.6 33 0.0024 19.4 0.7 16 45-60 15-30 (110)
9 d1uera2 d.44.1.1 (A:85-191) Ca 11.3 35 0.0025 19.2 0.7 16 45-60 14-29 (107)
10 d2e74g1 f.23.26.1 (G:9-35) Pet 11.1 86 0.0063 14.2 2.3 15 17-31 2-16 (27)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=69.28 E-value=2.9 Score=20.84 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy10100 13 VIISAWGIVQLALMGVFYHIRS 34 (65)
Q Consensus 13 ~vlSvWGii~L~llGi~F~~~s 34 (65)
+|--+=|+.-+.++|+|||-.=
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeeehhhhhhHhheeeeeeeee
Confidence 3444668889999999998643
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=64.33 E-value=2.6 Score=21.33 Aligned_cols=16 Identities=6% Similarity=0.424 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10100 17 AWGIVQLALMGVFYHI 32 (65)
Q Consensus 17 vWGii~L~llGi~F~~ 32 (65)
-||.+...++|++|+.
T Consensus 18 y~GlLlifvl~vLFss 33 (37)
T d2axtl1 18 YLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999999974
No 3
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.76 E-value=15 Score=17.52 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=7.0
Q ss_pred ccCCcchhHH
Q psy10100 3 ICGPKLSLCG 12 (65)
Q Consensus 3 ~cGpk~s~cc 12 (65)
.-||||+.|.
T Consensus 6 ~fapkC~~C~ 15 (35)
T d1x3ha1 6 MFSPKCGGCN 15 (35)
T ss_dssp CCSCBCTTTC
T ss_pred HhChhhhhcC
Confidence 3478888874
No 4
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.65 E-value=44 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10100 13 VIISAWGIVQLALMGVF 29 (65)
Q Consensus 13 ~vlSvWGii~L~llGi~ 29 (65)
+.+++||+++..+.|-+
T Consensus 168 t~vgi~giii~~~v~al 184 (199)
T d1rh1a2 168 TVVGFVGVVIAGAIGAF 184 (199)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45678887777666643
No 5
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=14.36 E-value=33 Score=18.50 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=9.4
Q ss_pred CchhhHHHHHHHhhhc
Q psy10100 49 ASIDDFYQTVERGYTL 64 (65)
Q Consensus 49 ~s~~~f~~~~~~~Y~~ 64 (65)
.+.+.| +++++||+.
T Consensus 47 g~~e~~-~~in~Ay~~ 61 (79)
T d1fafa_ 47 GSHALM-QELNSLWGT 61 (79)
T ss_dssp CCHHHH-HHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHH
Confidence 343444 788888864
No 6
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus halodurans [TaxId: 86665]}
Probab=14.04 E-value=26 Score=20.04 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=10.8
Q ss_pred chhhHHHHHHHhhhc
Q psy10100 50 SIDDFYQTVERGYTL 64 (65)
Q Consensus 50 s~~~f~~~~~~~Y~~ 64 (65)
+.-+|++.++++|..
T Consensus 15 ~V~~F~~~VE~aYE~ 29 (85)
T d2oy9a1 15 DVVHFFQAIEQAYDQ 29 (85)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc
Confidence 445778888888864
No 7
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.72 E-value=23 Score=16.62 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=5.6
Q ss_pred CcccCCcch
Q psy10100 1 MKICGPKLS 9 (65)
Q Consensus 1 ~~~cGpk~s 9 (65)
|.+||.|-|
T Consensus 6 C~~CgrkFA 14 (28)
T d1a1ia3 6 CDICGRKFA 14 (28)
T ss_dssp CTTTCCEES
T ss_pred cchhhhhhh
Confidence 457777654
No 8
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.61 E-value=33 Score=19.36 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=12.3
Q ss_pred CcccCchhhHHHHHHH
Q psy10100 45 ETHFASIDDFYQTVER 60 (65)
Q Consensus 45 ~~~~~s~~~f~~~~~~ 60 (65)
+++|.|.|+|+++..+
T Consensus 15 ~~~FGS~e~fk~~f~~ 30 (110)
T d1my6a2 15 NSAFGSYDEFKAQFKN 30 (110)
T ss_dssp HHHHSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 4689999999877654
No 9
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.26 E-value=35 Score=19.17 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=12.4
Q ss_pred CcccCchhhHHHHHHH
Q psy10100 45 ETHFASIDDFYQTVER 60 (65)
Q Consensus 45 ~~~~~s~~~f~~~~~~ 60 (65)
+++|.|.++|+++..+
T Consensus 14 ~~~FGS~d~fk~~f~~ 29 (107)
T d1uera2 14 DKQFGSFEKFKEEFNT 29 (107)
T ss_dssp HHHHSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4688999999877654
No 10
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.11 E-value=86 Score=14.24 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHh
Q psy10100 17 AWGIVQLALMGVFYH 31 (65)
Q Consensus 17 vWGii~L~llGi~F~ 31 (65)
+-|.|...+-|.||.
T Consensus 2 vlgli~~tl~glf~a 16 (27)
T d2e74g1 2 VLGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 346677666666664
Done!