RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10100
         (65 letters)



>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
           microtubles, motor protein; HET: ADP SPM; 2.81A
           {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score = 29.9 bits (67), Expect = 0.033
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 7   KLSLCGVIISAWGIVQ---LALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTV 58
           +L+    ++  W  VQ   + L G+F    S  + + LP E T F SI+  +  +
Sbjct: 231 RLNKVRSLLDVWIDVQRRWVYLEGIF--SGSGDINQLLPAESTRFKSINSEFIAI 283


>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium
           purpureum} SCOP: c.53.2.1 c.53.2.1
          Length = 496

 Score = 29.5 bits (66), Expect = 0.054
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 22  QLALMGVFYHIRSVALIEDLPGEETHFASIDDFYQTVE 59
           +L + GV Y +     + D+         I   ++T +
Sbjct: 460 ELEVQGVVYGVGD-GKLRDMGVVAKANDDIGQIFRTKQ 496


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.057
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 19/74 (25%)

Query: 10  LCGVIISAW---GIVQLALMGVFYHIRSV---ALIEDLPGEETHFASI------------ 51
           L  + IS     G++QLA   V   +       L   L G   H   +            
Sbjct: 231 LLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289

Query: 52  DDFYQTVERGYTLL 65
           + F+ +V +  T+L
Sbjct: 290 ESFFVSVRKAITVL 303



 Score = 25.0 bits (54), Expect = 2.3
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 26/76 (34%)

Query: 3   ICGPKLSLCGVIIS------AWGIVQ---------LALMGVF------YH----IRSVAL 37
           + GP  SL G+ ++        G+ Q         L     F      +H    + +  L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438

Query: 38  I-EDLPGEETHFASID 52
           I +DL      F + D
Sbjct: 439 INKDLVKNNVSFNAKD 454


>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
           cytoplasmic; motor protein, AAA+ protein, ASCE protein,
           P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
           japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
          Length = 2695

 Score = 28.3 bits (63), Expect = 0.14
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 7   KLSLCGVIISAWGIVQ---LALMGVFYH---IRSVALIEDLPGEETHFASIDDFYQTV 58
           KL+    I   W  VQ   L L G+      I++      LP E + F S+   Y+ +
Sbjct: 290 KLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQN-----FLPLETSKFKSLTSEYKMI 342


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,032,596
Number of extensions: 47788
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 6
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)