Query psy10102
Match_columns 86
No_of_seqs 102 out of 290
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:56:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106|consensus 100.0 9.7E-44 2.1E-48 260.6 5.4 85 2-86 116-200 (212)
2 COG5196 ERD2 ER lumen protein 100.0 6.8E-37 1.5E-41 222.8 5.6 84 3-86 118-202 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 9.8E-31 2.1E-35 183.4 4.9 55 2-56 93-147 (147)
4 PF04193 PQ-loop: PQ loop repe 95.8 0.03 6.4E-07 32.8 4.8 53 3-55 3-55 (61)
5 smart00679 CTNS Repeated motif 84.5 0.82 1.8E-05 23.4 1.7 26 15-40 1-26 (32)
6 TIGR00951 2A43 Lysosomal Cysti 79.8 7.6 0.00017 28.6 6.0 46 10-55 12-64 (220)
7 COG4095 Uncharacterized conser 76.3 11 0.00023 25.0 5.2 43 9-51 12-54 (89)
8 PHA02246 hypothetical protein 63.2 29 0.00063 25.6 5.6 57 15-76 122-178 (192)
9 COG4618 ArpD ABC-type protease 43.4 73 0.0016 27.4 5.6 49 7-55 30-84 (580)
10 PHA00212 putative transcriptio 22.3 44 0.00095 20.5 0.8 14 14-27 38-51 (63)
11 PF03083 MtN3_slv: Sugar efflu 20.2 2.2E+02 0.0047 17.2 4.1 58 15-76 16-78 (87)
No 1
>KOG3106|consensus
Probab=100.00 E-value=9.7e-44 Score=260.63 Aligned_cols=85 Identities=75% Similarity=1.337 Sum_probs=82.8
Q ss_pred ceeehhhHHHHHHhHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhhhhhhhhcCCcchhHhHHHHHHHHHHhcee
Q psy10102 2 VQVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFF 81 (86)
Q Consensus 2 ~ei~WtfSi~LEsvAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~y~~~~~~~~~~~~~g~iqt~l~~dF~ 81 (86)
.|++||||+|||||||||||+|+||+|++|++|+||+|+||+||++|++|||+|+..+++++++++++|++||++|||||
T Consensus 116 ~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~~~~~iai~agiVQT~ly~DFf 195 (212)
T KOG3106|consen 116 LEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTEDFWDPIAIVAGIVQTVLYADFF 195 (212)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeC
Q psy10102 82 YLYIT 86 (86)
Q Consensus 82 y~Y~~ 86 (86)
|+|+|
T Consensus 196 y~Y~~ 200 (212)
T KOG3106|consen 196 YLYVT 200 (212)
T ss_pred HHHHH
Confidence 99974
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.8e-37 Score=222.80 Aligned_cols=84 Identities=57% Similarity=0.987 Sum_probs=80.7
Q ss_pred eeehhhHHHHHHhHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhhhhhhhhc-CCcchhHhHHHHHHHHHHhcee
Q psy10102 3 QVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRYYSE-DYLDLIAIVAGVVQTALYCDFF 81 (86)
Q Consensus 3 ei~WtfSi~LEsvAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~y~~~-~~~~~~~~~~g~iqt~l~~dF~ 81 (86)
+++||||+|||||||||||+|+||.||.|++|+||+++||+||++|++|||+|+..+ +..+.+++.+|++||++|.|||
T Consensus 118 nvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf 197 (214)
T COG5196 118 NVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFF 197 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhH
Confidence 789999999999999999999999999999999999999999999999999998876 7889999999999999999999
Q ss_pred eEeeC
Q psy10102 82 YLYIT 86 (86)
Q Consensus 82 y~Y~~ 86 (86)
+.|+|
T Consensus 198 ~iYyr 202 (214)
T COG5196 198 AIYYR 202 (214)
T ss_pred Hhhhh
Confidence 99875
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=99.96 E-value=9.8e-31 Score=183.43 Aligned_cols=55 Identities=78% Similarity=1.431 Sum_probs=53.8
Q ss_pred ceeehhhHHHHHHhHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhhhhhh
Q psy10102 2 VQVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRY 56 (86)
Q Consensus 2 ~ei~WtfSi~LEsvAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~y 56 (86)
.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++||++||
T Consensus 93 ~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 93 LEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999996
No 4
>PF04193 PQ-loop: PQ loop repeat
Probab=95.84 E-value=0.03 Score=32.78 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=46.5
Q ss_pred eeehhhHHHHHHhHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhhhhh
Q psy10102 3 QVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYR 55 (86)
Q Consensus 3 ei~WtfSi~LEsvAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~ 55 (86)
+++...+.-+.+++-+||+....|++.++.+..-++.......++.+++.+..
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999999988888888877654
No 5
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=84.47 E-value=0.82 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=21.4
Q ss_pred hHhhhHhHhhhhcCCcchhHHHHHHH
Q psy10102 15 VAILPQLFLVSKTGEAESITSHYLFA 40 (86)
Q Consensus 15 vAILPQL~ml~k~~~ve~lts~Yv~~ 40 (86)
++-+||.....|++.++.+-..+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 35789999999999999887766654
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=79.79 E-value=7.6 Score=28.60 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHhHhhhHhHhhhhcCCcchhHHHHHHH-------HHHHHHHHHHhhhhh
Q psy10102 10 IYLESVAILPQLFLVSKTGEAESITSHYLFA-------LGAYRALYLLNWVYR 55 (86)
Q Consensus 10 i~LEsvAILPQL~ml~k~~~ve~lts~Yv~~-------Lg~yR~ly~~~Wi~~ 55 (86)
.-.=+++-+||+....|++.+|.+...++.. .+.|-.+...+|-.+
T Consensus 12 ~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~ 64 (220)
T TIGR00951 12 VAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64 (220)
T ss_pred HHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 3445788999999999999999998888873 444444444445444
No 7
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=76.26 E-value=11 Score=24.99 Aligned_cols=43 Identities=30% Similarity=0.360 Sum_probs=35.7
Q ss_pred HHHHHHhHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHh
Q psy10102 9 SIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLN 51 (86)
Q Consensus 9 Si~LEsvAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~ 51 (86)
+--+-.+|.+||+.-.-|+++..+++--....+..++++.+++
T Consensus 12 a~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliy 54 (89)
T COG4095 12 AGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999999988888888888885443
No 8
>PHA02246 hypothetical protein
Probab=63.16 E-value=29 Score=25.60 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=37.4
Q ss_pred hHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhhhhhhhhcCCcchhHhHHHHHHHHH
Q psy10102 15 VAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTAL 76 (86)
Q Consensus 15 vAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~y~~~~~~~~~~~~~g~iqt~l 76 (86)
.|-.||...+.|++..|....-.-..+|..-++-..+-.. .+....-+++++++.++
T Consensus 122 LaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L-----thv~~hIiiTEf~N~iL 178 (192)
T PHA02246 122 LAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL-----THTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh-----hCCcceeeHHHHHHHHH
Confidence 4778999999999999987766555566554443333222 23444556778777754
No 9
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=43.40 E-value=73 Score=27.42 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=43.9
Q ss_pred hhHHHHHHhHhhhHhHhhhh------cCCcchhHHHHHHHHHHHHHHHHHhhhhh
Q psy10102 7 TFSIYLESVAILPQLFLVSK------TGEAESITSHYLFALGAYRALYLLNWVYR 55 (86)
Q Consensus 7 tfSi~LEsvAILPQL~ml~k------~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~ 55 (86)
.||....-+++.|-|+|+|= ++.++++..--+.++|+|=+.-++-||-+
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~ 84 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRS 84 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888999999999993 68999999999999999999999999865
No 10
>PHA00212 putative transcription regulator
Probab=22.32 E-value=44 Score=20.52 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=10.5
Q ss_pred HhHhhhHhHhhhhc
Q psy10102 14 SVAILPQLFLVSKT 27 (86)
Q Consensus 14 svAILPQL~ml~k~ 27 (86)
-=|++|||+--++.
T Consensus 38 ~~~l~pql~ewsna 51 (63)
T PHA00212 38 KDSLLPQLFEWSNA 51 (63)
T ss_pred HHhHHHHHHHHHHH
Confidence 34889999977654
No 11
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=20.22 E-value=2.2e+02 Score=17.20 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=34.4
Q ss_pred hHhhhHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhhhhh-hhhcCCc----chhHhHHHHHHHHH
Q psy10102 15 VAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYR-YYSEDYL----DLIAIVAGVVQTAL 76 (86)
Q Consensus 15 vAILPQL~ml~k~~~ve~lts~Yv~~Lg~yR~ly~~~Wi~~-y~~~~~~----~~~~~~~g~iqt~l 76 (86)
.+=+||+.-..|+|..|.+...-..+.. +....|+.- +..++.+ +...++.+.+|.++
T Consensus 16 ~spl~~i~~v~k~ks~~~~~~~~~~~~~----~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 16 LSPLPQIRQVIKTKSTGSVSFPPFLAMF----FNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred HHHHHHHHHHHhCCCCCccceehhHHHh----hhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhh
Confidence 4557999999999988888766555443 344558755 4444432 22333444444443
Done!