Query psy10102
Match_columns 86
No_of_seqs 102 out of 290
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:57:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g3o_A E3 ubiquitin-protein li 24.6 23 0.00078 20.8 0.7 23 16-38 26-54 (58)
2 2fm8_C Cell invasion protein S 24.6 28 0.00095 25.5 1.3 12 11-22 221-232 (240)
3 2fm9_A Cell invasion protein S 23.5 24 0.00082 25.5 0.8 11 12-22 196-206 (215)
4 2k37_A Chlorosome protein A; b 10.0 83 0.0029 18.4 0.6 11 6-16 27-37 (59)
5 2hzd_A Transcriptional enhance 7.8 2E+02 0.0067 17.7 1.7 12 10-21 16-27 (82)
6 1ekr_A Molybdenum cofactor bio 6.9 1.8E+02 0.0062 20.0 1.4 22 26-47 108-130 (161)
7 2iih_A Molybdenum cofactor bio 6.7 1.9E+02 0.0064 19.8 1.4 20 26-45 106-126 (157)
8 2eey_A Molybdopterin biosynthe 6.6 1.9E+02 0.0066 19.9 1.4 22 26-47 110-132 (162)
9 1ssz_A Pulmonary surfactant-as 6.6 1.2E+02 0.004 15.7 0.2 6 17-22 21-26 (34)
10 2lx0_A Membrane fusion protein 6.3 3.4E+02 0.012 13.7 2.7 15 44-58 16-30 (32)
No 1
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=24.61 E-value=23 Score=20.76 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.5
Q ss_pred HhhhHhHh------hhhcCCcchhHHHHH
Q psy10102 16 AILPQLFL------VSKTGEAESITSHYL 38 (86)
Q Consensus 16 AILPQL~m------l~k~~~ve~lts~Yv 38 (86)
.+.||+.. ++|+|.+|.-+.+++
T Consensus 26 ~mFPqv~~~~I~~DL~rTgSVe~TienIL 54 (58)
T 4g3o_A 26 EMFPQVPYHLVLQDLQLTRSVEITTDNIL 54 (58)
T ss_dssp HHCTTSCHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 57788764 568899998887764
No 2
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=24.55 E-value=28 Score=25.52 Aligned_cols=12 Identities=33% Similarity=0.575 Sum_probs=10.5
Q ss_pred HHHHhHhhhHhH
Q psy10102 11 YLESVAILPQLF 22 (86)
Q Consensus 11 ~LEsvAILPQL~ 22 (86)
=||.+|++|||.
T Consensus 221 ~Le~~AviP~LL 232 (240)
T 2fm8_C 221 HLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 489999999985
No 3
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=23.47 E-value=24 Score=25.51 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=9.8
Q ss_pred HHHhHhhhHhH
Q psy10102 12 LESVAILPQLF 22 (86)
Q Consensus 12 LEsvAILPQL~ 22 (86)
||.+|++|||.
T Consensus 196 L~~~av~P~LL 206 (215)
T 2fm9_A 196 LEMQTLIPLLL 206 (215)
T ss_dssp CHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 78999999985
No 4
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=9.95 E-value=83 Score=18.45 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=9.0
Q ss_pred hhhHHHHHHhH
Q psy10102 6 WTFSIYLESVA 16 (86)
Q Consensus 6 WtfSi~LEsvA 16 (86)
|++|-+||+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 78888888876
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=7.81 E-value=2e+02 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.9
Q ss_pred HHHHHhHhhhHh
Q psy10102 10 IYLESVAILPQL 21 (86)
Q Consensus 10 i~LEsvAILPQL 21 (86)
-++|++++.|+.
T Consensus 16 aF~eaL~~yp~~ 27 (82)
T 2hzd_A 16 SFQEALSIYPPC 27 (82)
T ss_dssp HHHHHHHHSCSS
T ss_pred HHHHHHHHcCCC
Confidence 478999999965
No 6
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=6.92 E-value=1.8e+02 Score=19.99 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=18.2
Q ss_pred hcC-CcchhHHHHHHHHHHHHHH
Q psy10102 26 KTG-EAESITSHYLFALGAYRAL 47 (86)
Q Consensus 26 k~~-~ve~lts~Yv~~Lg~yR~l 47 (86)
||| |-|.+|+--+++|.+|=-+
T Consensus 108 kTGVEMEALtavsvA~LTiYDM~ 130 (161)
T 1ekr_A 108 KTGVEMEALTAASVAALTIYDMC 130 (161)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 566 8899999999999988543
No 7
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=6.74 E-value=1.9e+02 Score=19.80 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=17.7
Q ss_pred hcC-CcchhHHHHHHHHHHHH
Q psy10102 26 KTG-EAESITSHYLFALGAYR 45 (86)
Q Consensus 26 k~~-~ve~lts~Yv~~Lg~yR 45 (86)
||| |-|.+|+--+++|.+|-
T Consensus 106 ~TGVEMEALtavsvA~LTiyD 126 (157)
T 2iih_A 106 ETGVEMEAMTACAVAALTVYD 126 (157)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 677 89999999999999884
No 8
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=6.61 E-value=1.9e+02 Score=19.85 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.4
Q ss_pred hcC-CcchhHHHHHHHHHHHHHH
Q psy10102 26 KTG-EAESITSHYLFALGAYRAL 47 (86)
Q Consensus 26 k~~-~ve~lts~Yv~~Lg~yR~l 47 (86)
||| |-|.+|+--+++|.+|=-+
T Consensus 110 kTGVEMEALtavsvA~LTiyDM~ 132 (162)
T 2eey_A 110 STGVEMEALTAASVCALTVYDMC 132 (162)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 567 8999999999999988543
No 9
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=6.57 E-value=1.2e+02 Score=15.70 Aligned_cols=6 Identities=67% Similarity=1.160 Sum_probs=4.3
Q ss_pred hhhHhH
Q psy10102 17 ILPQLF 22 (86)
Q Consensus 17 ILPQL~ 22 (86)
+||||.
T Consensus 21 mlpqlv 26 (34)
T 1ssz_A 21 MLPQLV 26 (34)
T ss_dssp CCHHHH
T ss_pred hhHHHH
Confidence 578875
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.34 E-value=3.4e+02 Score=13.65 Aligned_cols=15 Identities=20% Similarity=0.569 Sum_probs=10.7
Q ss_pred HHHHHHHhhhhhhhh
Q psy10102 44 YRALYLLNWVYRYYS 58 (86)
Q Consensus 44 yR~ly~~~Wi~~y~~ 58 (86)
-.++-+-+|..+|..
T Consensus 16 ltflafgfwlfkylq 30 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 345667789988865
Done!