RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10102
(86 letters)
>gnl|CDD|227523 COG5196, ERD2, ER lumen protein retaining receptor [Intracellular
trafficking and secretion].
Length = 214
Score = 96.4 bits (240), Expect = 1e-26
Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 3 QVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRYYSED-Y 61
VLWTFS++LESVAILPQL ++ + GE ES+TSHY+FA+G YRALY+ W+ R +
Sbjct: 118 NVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKK 177
Query: 62 LDLIAIVAGVVQTALYCDFFYLYIT 86
IAI AG+VQT LY DFF +Y
Sbjct: 178 TGNIAIAAGIVQTLLYLDFFAIYYR 202
>gnl|CDD|144416 pfam00810, ER_lumen_recept, ER lumen protein retaining receptor.
Length = 143
Score = 86.8 bits (216), Expect = 1e-23
Identities = 43/54 (79%), Positives = 51/54 (94%)
Query: 3 QVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRY 56
++LWTFSIYLESVAILPQLF++ KTGE E++TSHYLFALG YRALY+LNW+YRY
Sbjct: 90 EILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYLFALGLYRALYILNWIYRY 143
>gnl|CDD|236806 PRK10957, PRK10957, iron-enterobactin transporter periplasmic
binding protein; Provisional.
Length = 317
Score = 27.2 bits (61), Expect = 0.78
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1 KVQVLWTFSIYLESVAIL-PQLFLVSKTGEAESITSHY 37
V+VL+ E+VA P L ++S TG +S + Y
Sbjct: 95 GVEVLYIGEPDAEAVAAQMPDLIVISATG-GDSALALY 131
>gnl|CDD|200540 cd11279, Sema_RON, The Sema domain, a protein interacting module,
of RON Receptor Tyrosine Kinase. RON receptor tyrosine
kinase is a Macrophage-stimulating protein (MSP)
receptor. Upon binding of MSP, RON is activated via
autophosphorylation within its kinase catalytic domain,
resulting in a wide range of effects, including
proliferation, tubular morphogenesis, angiogenesis,
cellular motility and invasiveness. By interacting with
downstream signaling molecules, it regulates macrophage
migration, phagocytosis, and nitric oxide production.
RON has been implicated in cancers of the breast, colon,
pancreas and ovaries because both splice variants and
receptor overexpression have been identified in these
tumors. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as ligand recognition and
binding model. RON is composed of an alpha-beta
heterodimer. The extracellular alpha chain is disulfide
linked to the beta chain, which contains an
extracellular ligand-binding region with a Sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic tyrosine kinase
domain. The Sema domain of RON may be necessary for
receptor dimerization and activation.
Length = 493
Score = 26.3 bits (58), Expect = 2.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 36 HYLFALGAYRALYLLNWVYRYYSEDYLDLIAI 67
H L L Y Y +++V+ + S D++ + +
Sbjct: 205 HSLTVLPKYLDSYPIHYVHSFTSGDFVYFLTV 236
>gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA,
beta isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. In addition, PI3Kbeta can
also be activated by G-protein-coupled receptors.
Deletion of PI3Kbeta in mice results in early lethality
at around day three of development. PI3Kbeta plays an
important role in regulating sustained integrin
activation and stable platelet agrregation, especially
under conditions of high shear stress.
Length = 362
Score = 26.1 bits (57), Expect = 2.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 33 ITSHYLFALGAYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYC 78
+ S + A A+ LLNW+ Y S D L+ AI + A YC
Sbjct: 160 LNSSNVAAAAAFNKDALLNWLKEYNSGDDLER-AIEEFTLSCAGYC 204
>gnl|CDD|237719 PRK14462, PRK14462, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 356
Score = 25.8 bits (57), Expect = 3.0
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 43 AYRALYLLNWVYRYYSEDYLDL 64
++RA + W+Y Y+ + D+
Sbjct: 20 SFRAKQIYQWLYAKYATSFDDM 41
>gnl|CDD|145936 pfam03052, Adeno_52K, Adenoviral protein L1 52/55-kDa. The
adenoviral protein L1 52/55-kDa is expressed in both the
early and late stages of infection which suggests that
it could play multiple roles in the viral life cycle.
The L1 52/55 kDa protein interacts with the viral IVa2
protein and is required for DNA packaging. L1 53/55-kDa
is required to mediate stable association between the
viral DNA and empty capsid.
Length = 198
Score = 24.7 bits (54), Expect = 5.8
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 5 LWTF-SIYLE---SVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWV---YRYY 57
LW F YLE SVA+ QL L+++ GE L +G + +L + +
Sbjct: 124 LWDFLQAYLEHPNSVALTAQLLLIAQHGEDNGALREALPDIGEKGSEWLRDLIQMLAVIV 183
Query: 58 SEDYLDLIAIVAGV 71
E L + VA +
Sbjct: 184 QERELSVREQVAAI 197
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 24.8 bits (54), Expect = 6.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 46 ALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFF 81
A +LLN +Y ED++ ++A+V V T + D F
Sbjct: 75 ATHLLNGLYDA-KEDHVPVLALVGQVPTTGMNMDTF 109
>gnl|CDD|184693 PRK14467, PRK14467, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 348
Score = 24.7 bits (54), Expect = 6.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 44 YRALYLLNWVYRYYSEDY 61
YRA + WVY+ D+
Sbjct: 24 YRAKQIAKWVYKKKVTDF 41
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 24.9 bits (54), Expect = 7.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 40 ALGAYRALYLLNWVYRYYSEDYLDLIAI 67
++G ++ LLN +Y + L + I
Sbjct: 338 SMGESKSKMLLNKLYEMIQDRSLFTLPI 365
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.436
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,481,724
Number of extensions: 366897
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 20
Length of query: 86
Length of database: 10,937,602
Length adjustment: 54
Effective length of query: 32
Effective length of database: 8,542,486
Effective search space: 273359552
Effective search space used: 273359552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)