RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10102
         (86 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.037
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 21/85 (24%)

Query: 8   FSIYLESVAIL-----PQLF-LVSKTGEAESITSHYLFALGAYRALYLLNWVY---RYYS 58
           +  Y   V  L       L  L+  T +AE + +           L +L W+        
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ---------GLNILEWLENPSNTPD 227

Query: 59  EDYLDLIAI---VAGVVQTALYCDF 80
           +DYL  I I   + GV+Q A Y   
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVT 252



 Score = 28.1 bits (62), Expect = 0.28
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 26/91 (28%)

Query: 11  YLESVAILPQ---------LFLVSKTGEAESITSHYLFAL----GAYRALYL--LNWVYR 55
           Y+ +  +  +         LF     G A+      L A+    G     Y   L  +Y+
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQ------LVAIFGGQGNTDD-YFEELRDLYQ 178

Query: 56  YYSEDYLDLIAIVAGV----VQTALYCDFFY 82
            Y     DLI   A      ++T L  +  +
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209



 Score = 26.6 bits (58), Expect = 0.98
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 8/37 (21%)

Query: 19   PQLFLVSKT-----GEAESITSHYLFA---LGAYRAL 47
            P L L+ K           I +   FA   LG Y AL
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 0.51
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 3   QVLWTFSIYLESVAILPQLF---LVSKTGEAESITSH--YLFALGAYRALYLLN--WVYR 55
            ++W   I  + + ++ +L    LV K  +  +I+    YL         Y L+   V  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 56  YYSEDYLDLIAIVAGVVQTALYCD-FFYLYI 85
           Y      D   +         Y D +FY +I
Sbjct: 453 YNIPKTFDSDDL------IPPYLDQYFYSHI 477


>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
           receptor, PAS domain, chromophore, sensory transduction;
           HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
          Length = 520

 Score = 25.8 bits (56), Expect = 1.8
 Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 12/38 (31%)

Query: 28  GE--AESITSHYLFALG----------AYRALYLLNWV 53
           G+  AE         LG            R L++ N +
Sbjct: 184 GDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPI 221


>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
           fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
           radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
           2o9b_A* 1ztu_A*
          Length = 343

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 12/38 (31%)

Query: 28  GE--AESITSHYLFALG----------AYRALYLLNWV 53
           GE  AE+        LG            RALY  + +
Sbjct: 198 GEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLL 235


>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor,
           bacteriopbhytochrome; HET: MSE BLA; 2.90A
           {Rhodopseudomonas palustris tie-1}
          Length = 635

 Score = 24.0 bits (51), Expect = 8.0
 Identities = 8/38 (21%), Positives = 9/38 (23%), Gaps = 12/38 (31%)

Query: 28  GE--AESITSHYLFALG----------AYRALYLLNWV 53
           GE  +E          G            R LY    V
Sbjct: 178 GEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRV 215


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,343,208
Number of extensions: 65508
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)